Citrus Sinensis ID: 009059
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.994 | 0.582 | 0.617 | 0.0 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.515 | 0.184 | 0.340 | 3e-32 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.561 | 0.225 | 0.303 | 1e-30 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.491 | 0.213 | 0.302 | 4e-25 | |
| P0CS42 | 433 | Nuclear distribution prot | yes | no | 0.495 | 0.623 | 0.269 | 8e-24 | |
| P0CS43 | 433 | Nuclear distribution prot | N/A | no | 0.495 | 0.623 | 0.269 | 8e-24 | |
| C4Q0P6 | 417 | Lissencephaly-1 homolog O | N/A | no | 0.491 | 0.642 | 0.281 | 6e-23 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.497 | 0.365 | 0.303 | 8e-22 | |
| O22212 | 554 | U4/U6 small nuclear ribon | no | no | 0.495 | 0.487 | 0.284 | 4e-21 | |
| C3XVT5 | 406 | Lissencephaly-1 homolog O | yes | no | 0.438 | 0.588 | 0.264 | 6e-21 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
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Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/560 (61%), Positives = 435/560 (77%), Gaps = 18/560 (3%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNL S S ++ E+R+L+ML N+R+M L +DG +SVGD++ VGS++Q LP
Sbjct: 375 LMLAQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVGSSLQPGGSLLP 433
Query: 61 RGDNDLLIKLTTTQIQQQQQQLQHYSHH--------------PLSSQQSQNSNPLLQQQD 106
RGD D+L+KL +QQQQQ Q + L++ Q Q+SN + QQ+
Sbjct: 434 RGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNPQPQSSNHSIHQQE 493
Query: 107 KILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPS 166
K+ GGS+TMDGS+SN+F+GN+Q KNQ GRKRKQ VSSSGPANSSGTANT GP+PSS
Sbjct: 494 KLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSGTANTAGPSPSSAP 553
Query: 167 SPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDN 225
S + HTPGDVIS P L H+G SSKS++MFG++G G+LTS NQL DMDRFV+DGSLDDN
Sbjct: 554 STPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLADMDRFVEDGSLDDN 613
Query: 226 VESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 285
VESFLS +D D RD V R +V KGFTFTE + AST+KV CHFS DGK+LA+ GHDK
Sbjct: 614 VESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDK 673
Query: 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345
KAVLW T++ K+TLEEHT ITD+RFSPS RLATSS D+TVRVWD +N YSLRTF
Sbjct: 674 KAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSLRTFM 733
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405
GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC V+K G+TQ+RFQPR+G+
Sbjct: 734 GHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GGSTQIRFQPRVGKY 791
Query: 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465
LAA+ N +++LDVETQ R LQGH N ++SVCW+ SG++LASVS+++V+VW++G+GS+
Sbjct: 792 LAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSE 851
Query: 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 525
GEC+HELSC GNKF SCVFHP +PSLLVIGCY++LELWNM+ENKT+TL AH+ L++SLA
Sbjct: 852 GECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLPAHEGLITSLAV 911
Query: 526 STVNGMVASASHDKCVKIWK 545
ST G+VASASHDK VK+WK
Sbjct: 912 STATGLVASASHDKLVKLWK 931
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
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Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 151/291 (51%), Gaps = 10/291 (3%)
Query: 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317
++ TS V S F+PDG LA+G D+ LW S T + HT W+ V F+P
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254
Query: 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
S LA+ S+D+TVR+WD + L TF GH+ V S+ F+P +L S + +R W
Sbjct: 1255 SMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDGS-MLASGSGDQTVRLWE 1312
Query: 378 INNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 436
I++ C F+ S + + F P + + + + + + + + C GH N V
Sbjct: 1313 ISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVG 1372
Query: 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495
SV ++ G LAS S D+ VR+WSI S G+C++ L N S VF P +LL G
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASG 1428
Query: 496 C-YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T+ LWN++ + L TL H V S+A S+ ++AS S D+ +K+W
Sbjct: 1429 SDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
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Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 17/323 (5%)
Query: 230 LSPDDADPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 284
SPD R+RV ++ ++ + T Q + +V+S FSPDG+ +A+G D
Sbjct: 891 FSPD----RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946
Query: 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344
+W S T TLE H + V FSP R+A+ S D+T+++WDT + + +T
Sbjct: 947 HTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT-QTL 1005
Query: 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLG 403
GH +V S+ F P + + D+ + I+ W +G+C + G Q + F P
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKT-IKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462
R+ + + ++ I I D + C L+GH + V SV ++ G+ +AS S D +++W S
Sbjct: 1065 RVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAAS 1124
Query: 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVS 521
G+ C L G HS F P + T+++W+ T TL H V
Sbjct: 1125 GT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181
Query: 522 SLAASTVNGMVASASHDKCVKIW 544
S+A S VAS S DK +KIW
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIW 1204
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 10/278 (3%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
FSPD ++LA+G +DK LW ++ S+LE HT +I + FSP LA++S D +VR
Sbjct: 944 FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVR 1003
Query: 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390
+W+ + H+ V ++ FHP + ++ + + ++ W+I+ G C
Sbjct: 1004 LWNISTGQ-CFQILLEHTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEH 1061
Query: 391 SGATQ-MRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 448
S M + P G++LA A+ + + + D T C L+GH N+V+S ++ +GE +A
Sbjct: 1062 SDKILGMAWSPD-GQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIA 1120
Query: 449 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507
+ S D+ V++W +G+C+ L+ N F P L +T+ +W++
Sbjct: 1121 TCSTDQTVKIW---DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177
Query: 508 NKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 544
K + H LVSS+A S +VAS S D+ V+IW
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
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Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 391 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 440
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 441 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 484 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 530
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 531 ---------MVASASHDKCVKIW 544
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
F P LLA+ D LW E+ ++ TL+ HT+ + DV F P +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172
Query: 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390
+WDT N +++T GH +V S+ F P E L+ S + IR W +++G C F
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231
Query: 391 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 440
+ + GR L +A + S I D T +++L+GH++ V +
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291
Query: 441 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483
+ G Y A+ S D+ +++W S G+C+ L N + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348
Query: 484 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 530
FHP+ LL +T+++W++ + T T+ AH V+S+ VNG
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408
Query: 531 ---------MVASASHDKCVKIW 544
++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 23/291 (7%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
F P + + D +W E+ + TL+ HT + DV F PS LA+ SAD V+
Sbjct: 130 FHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVK 189
Query: 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390
+WD ++T TGH V S+ F PS D L S + I+ W ++ G C F
Sbjct: 190 LWDFTIYQ-CIKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGH 247
Query: 391 SGATQ-MRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 448
+ + +R P G +LA+ ++ I I VE++ C++ L+GH++ V + W + + L
Sbjct: 248 TEWIRSVRPSPE-GNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLN 306
Query: 449 SV--------------SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494
S+ D +R W + G C+ L N VFHP LL
Sbjct: 307 SLPSSMNSSLLLVSGSRDRTIRFWDVNIGI---CLFVLIGHDNWVRQLVFHPHGRLLLSA 363
Query: 495 GCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+T+ +W++ + TL+AH V+SL + + + S D+ + IW
Sbjct: 364 SDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIW 414
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Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Schistosoma mansoni (taxid: 6183) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 9/280 (3%)
Query: 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327
+ FSP G LLA G DK +W S TLE HT W+ V FSP + LA+ S D
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
TVR+WD + F GH+ V+ + F P ++ S + R W++ G+ V
Sbjct: 524 TVRLWDVAAAE-ERAVFEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVL 581
Query: 388 KCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 446
K + + F P + + + + I + DV T R LQ V S+ ++ G
Sbjct: 582 KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSM 641
Query: 447 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 505
L SD V +W + S GE +H + + F P +LL G + T+ LW++
Sbjct: 642 LVHGSDSTVHLWDVAS---GEALHTFEGHTDWVRAVAFSPDG-ALLASGSDDRTIRLWDV 697
Query: 506 -TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ + TL H + V S+A +ASAS D ++IW
Sbjct: 698 AAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737
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May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 11/281 (3%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 327
C FS DGK+LAT LW T + L++H + TDV FSP LAT+SADR
Sbjct: 261 CSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
T ++W T+ L+TF GH + + FHPS + L + + R W IN G+ +
Sbjct: 321 TAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGAELLLQ 377
Query: 388 KCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 446
+ S + + FQ + +++ + D+ T L QGH V SV ++ +G +
Sbjct: 378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYH 437
Query: 447 LAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWN 504
LAS D R+W + + ++ + N + P L Y+ + +W+
Sbjct: 438 LASGGEDNQCRIWDL---RMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS 494
Query: 505 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ + +L+ H+ V+SL + + +A+ SHD+ +K+W
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 29/268 (10%)
Query: 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318
+ T V+ F GKLLA+ D LW ++F T+ H ++ V F P+
Sbjct: 144 LKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGD 203
Query: 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
L ++S D+T+++W+ Y ++TFTGH V ++ + LL SC N+ +R W +
Sbjct: 204 FLISASRDKTIKMWELAT-GYCVKTFTGHREWVRTVRVNQDG-SLLASCSNDQTVRVWVV 261
Query: 379 NNGSCAGVFK---------------CQSGATQMRFQPRLGR----ILAAAIENYISILDV 419
N C + C +++ + GR +L+ + + I + D+
Sbjct: 262 ANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDI 321
Query: 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--HELSCTG 476
T VC + L GH N V V W+ G+Y+ S SD+ +RVW + + + H+ CT
Sbjct: 322 STGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCT- 380
Query: 477 NKFHSCVFHPTFPSLLVIGCYETLELWN 504
S FH + P ++ +T+++W
Sbjct: 381 ----SIDFHRSAPYVITGSVDQTVKVWE 404
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Branchiostoma floridae (taxid: 7739) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | ||||||
| 280967728 | 905 | LisH-SSDP-WD40 [Malus x domestica] | 0.977 | 0.588 | 0.743 | 0.0 | |
| 297738887 | 871 | unnamed protein product [Vitis vinifera] | 0.976 | 0.610 | 0.727 | 0.0 | |
| 225445366 | 878 | PREDICTED: transcriptional corepressor L | 0.976 | 0.605 | 0.719 | 0.0 | |
| 255546617 | 547 | WD-repeat protein, putative [Ricinus com | 0.959 | 0.956 | 0.724 | 0.0 | |
| 359484630 | 883 | PREDICTED: transcriptional corepressor L | 0.976 | 0.602 | 0.707 | 0.0 | |
| 356552537 | 893 | PREDICTED: transcriptional corepressor L | 0.992 | 0.605 | 0.675 | 0.0 | |
| 356552535 | 902 | PREDICTED: transcriptional corepressor L | 0.992 | 0.599 | 0.664 | 0.0 | |
| 356563834 | 903 | PREDICTED: transcriptional corepressor L | 0.992 | 0.599 | 0.669 | 0.0 | |
| 356507764 | 903 | PREDICTED: transcriptional corepressor L | 0.994 | 0.600 | 0.674 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.994 | 0.607 | 0.668 | 0.0 |
| >gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/541 (74%), Positives = 459/541 (84%), Gaps = 8/541 (1%)
Query: 9 ASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLI 68
ASPS+NDL++R+++ML N+RNM L +DG +SV V VGS Q+ P LPRGD D+L+
Sbjct: 321 ASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPNVGSPAQVGCPVLPRGDADMLM 378
Query: 69 KLTTTQIQQQQQQLQH----YSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTF 124
K T QQQ Q YS HPLS Q SQNS+ LQQ +KI+ GSM DGSM NT
Sbjct: 379 KPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQQHEKIMGSGSMAPDGSMPNTL 438
Query: 125 QGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQH 184
QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PSSPS+PSTHT GDV+S PTL H
Sbjct: 439 QGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPSSPSTPSTHTAGDVMSMPTLPH 498
Query: 185 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 244
NG SSKSLLMFGSDG+GS SAPN+LTD+DRFVDDGSL+DNVESFLS DDADPR RV R
Sbjct: 499 NGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLEDNVESFLSHDDADPRGRVVRC 558
Query: 245 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 304
++V KGF+F E QLIPAST+KVE CH S DGK LATGGHD+KAVLWCTE+++VKSTL+EH
Sbjct: 559 SDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGHDRKAVLWCTETYSVKSTLDEH 618
Query: 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 364
+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRTFTGHS+TVMS+DFHPSKED L
Sbjct: 619 SQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRTFTGHSSTVMSVDFHPSKEDFL 678
Query: 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424
CSCDNNSEIRYWSI NGSCAGVFK GA+Q+RFQP GR LAAA +N++SILDVETQVC
Sbjct: 679 CSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFGRNLAAAADNFVSILDVETQVC 736
Query: 425 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484
RLKLQGHK+ VHSVCW+ SG+YLASVSD+LVRVW+IGS KGE IHELSC+GNKF++CVF
Sbjct: 737 RLKLQGHKSAVHSVCWDPSGDYLASVSDDLVRVWTIGSSCKGEFIHELSCSGNKFNTCVF 796
Query: 485 HPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
HPT+P+LLVIGCYETLELWNMTENKT+TL AHDKLVSSLA S+ G+VASASHDKCVK+W
Sbjct: 797 HPTYPALLVIGCYETLELWNMTENKTMTLHAHDKLVSSLAVSSATGLVASASHDKCVKLW 856
Query: 545 K 545
K
Sbjct: 857 K 857
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/539 (72%), Positives = 442/539 (82%), Gaps = 7/539 (1%)
Query: 10 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 69
SPSA+DLE RKLRML NSRN L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK
Sbjct: 337 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 395
Query: 70 LTTTQIQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGND 128
L Q+Q QQ Q Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GND
Sbjct: 396 LQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGND 455
Query: 129 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 187
Q SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG
Sbjct: 456 QTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGG 515
Query: 188 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 247
SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +
Sbjct: 516 SSKSLLMYGSDGMGTHTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDG 575
Query: 248 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 307
KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q
Sbjct: 576 SKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQM 635
Query: 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 367
ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSC
Sbjct: 636 ITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSC 695
Query: 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427
D N EIRYWSI NGSC VFK G MRFQPR GR LAAA E +SILDVETQ CR K
Sbjct: 696 DGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQK 753
Query: 428 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHP 486
LQGHKN V SVCW++SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+SC FHP
Sbjct: 754 LQGHKNHV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHP 812
Query: 487 TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
T+ SLLVIGCY++LELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 813 TYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 871
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/545 (71%), Positives = 442/545 (81%), Gaps = 13/545 (2%)
Query: 10 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 69
SPSA+DLE RKLRML NSRN L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK
Sbjct: 338 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 396
Query: 70 ------LTTTQIQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 122
L Q+Q QQ Q Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSN
Sbjct: 397 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 456
Query: 123 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 181
TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PT
Sbjct: 457 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 516
Query: 182 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRV 241
L HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD V
Sbjct: 517 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTV 576
Query: 242 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 301
GRS + KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS L
Sbjct: 577 GRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRL 636
Query: 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361
EEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+
Sbjct: 637 EEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKD 696
Query: 362 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 421
DL+CSCD N EIRYWSI NGSC VFK G MRFQPR GR LAAA E +SILDVET
Sbjct: 697 DLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEGVVSILDVET 754
Query: 422 QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFH 480
Q CR KLQGHKN V SVCW++SG YLA+VS++LV+VW++GSG K ECIHEL +GNKF+
Sbjct: 755 QACRQKLQGHKNHV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFN 813
Query: 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540
SC FHPT+ SLLVIGCY++LELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD C
Sbjct: 814 SCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNC 873
Query: 541 VKIWK 545
VK+WK
Sbjct: 874 VKLWK 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546617|ref|XP_002514368.1| WD-repeat protein, putative [Ricinus communis] gi|223546824|gb|EEF48322.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/537 (72%), Positives = 438/537 (81%), Gaps = 14/537 (2%)
Query: 9 ASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLI 68
AS S NDLE RKLRML ++++M L +DG +S GD++ GS MQ+ +
Sbjct: 25 ASQSVNDLERRKLRMLLSNQSMALGKDGPLHS-GDVLGNFGSGMQL-----------HVT 72
Query: 69 KLTTTQIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 128
+L Q+Q QQ Q Y+ HPL SQQSQNSN LQ QDKI+ SMT DGSMSNTFQGND
Sbjct: 73 QLQQQQLQSNNQQQQQYAQHPLVSQQSQNSNQHLQPQDKIVGSSSMTGDGSMSNTFQGND 132
Query: 129 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGAS 188
QASK+QIGRKRKQ SSSGPANSSGTANT GP+PSSPS+PST TPGD IS P L H+G S
Sbjct: 133 QASKSQIGRKRKQPGSSSGPANSSGTANTTGPSPSSPSTPSTRTPGDAISMPMLPHSGGS 192
Query: 189 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 248
SK LL+FGSDG+GSL SA N L D+DRFVDD +LDDNV+SF S D AD RDRVGRSA+V
Sbjct: 193 SKPLLIFGSDGLGSLASASNDLADIDRFVDDRTLDDNVDSFFSHDPADLRDRVGRSADVS 252
Query: 249 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 308
KGF +E L+P+ST K+E CHFS DGKLLATGGHDKKA LWCTES T KS L+EH+QWI
Sbjct: 253 KGFELSEVGLLPSSTGKIECCHFSSDGKLLATGGHDKKATLWCTESLTAKSILDEHSQWI 312
Query: 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 368
TDVRFSPS+ RLATSSADRTVRVWD +N Y+LRTFTGHSTTVMS+DFHPSKEDL+CSCD
Sbjct: 313 TDVRFSPSIPRLATSSADRTVRVWDADNSGYTLRTFTGHSTTVMSVDFHPSKEDLICSCD 372
Query: 369 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 428
NNSEIRYWSI NGSC GVFK GATQ RFQP GRILAAA EN ISILDVETQ CRLKL
Sbjct: 373 NNSEIRYWSIKNGSCVGVFK--GGATQTRFQPHHGRILAAAAENVISILDVETQQCRLKL 430
Query: 429 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488
QGH+N +HSVCW+ SGEYLASVSD+LVRVW++GSGSKGEC+HELSCTGNKFH+CVFHPTF
Sbjct: 431 QGHRNPIHSVCWDPSGEYLASVSDDLVRVWTVGSGSKGECMHELSCTGNKFHTCVFHPTF 490
Query: 489 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
SLL+IGCYETLELWNM E KT+TL AHDKLVS+LA S V G+VASASHDK +K+WK
Sbjct: 491 SSLLIIGCYETLELWNMAEKKTMTLPAHDKLVSALAVSNVTGLVASASHDKLIKLWK 547
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/554 (70%), Positives = 442/554 (79%), Gaps = 22/554 (3%)
Query: 10 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 69
SPSA+DLE RKLRML NSRN L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK
Sbjct: 334 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 392
Query: 70 ------LTTTQIQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 122
L Q+Q QQ Q Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSN
Sbjct: 393 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 452
Query: 123 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 181
TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PT
Sbjct: 453 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 512
Query: 182 LQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSP 232
L HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVESFL+
Sbjct: 513 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAH 572
Query: 233 DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 292
DD DPRD VGRS + KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCT
Sbjct: 573 DDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCT 632
Query: 293 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352
ESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V
Sbjct: 633 ESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVT 692
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 412
SLDFHP+K+DL+CSCD N EIRYWSI NGSC VFK G MRFQPR GR LAAA E
Sbjct: 693 SLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAAEG 750
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHE 471
+SILDVETQ CR KLQGHKN V SVCW++SG YLA+VS++LV+VW++GSG K ECIHE
Sbjct: 751 VVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHE 809
Query: 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 531
L +GNKF+SC FHPT+ SLLVIGCY++LELWNMTENKT+TL AHDKL+SSLA S V G+
Sbjct: 810 LHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGL 869
Query: 532 VASASHDKCVKIWK 545
VASASHD CVK+WK
Sbjct: 870 VASASHDNCVKLWK 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/551 (67%), Positives = 443/551 (80%), Gaps = 10/551 (1%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNLASPSA+D ++R+LRML N+RN+G+ +DG SN VGD+VS +GS +Q P P
Sbjct: 347 LMLAQQNLASPSASD-DNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFP 405
Query: 61 RGDNDLLIKLTTTQIQQQQQQLQHYSHHP----LSSQQSQNSNPLLQQQDKILAGG-SMT 115
R D D+L+KL Q+Q QQQ LS+QQSQ SN + QQDK+ GG S+
Sbjct: 406 RSDTDMLMKLKLAQLQHQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSVN 465
Query: 116 MDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPG 174
+DGSMSN+F+GNDQ SKNQ GRKRKQ +SSGPANSSGTANT GP+PSS S + HTPG
Sbjct: 466 VDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTHTPG 524
Query: 175 DVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD 234
DV+S P L H+G+SSK L+MF +DG G+LTS NQL D+DRFV+DGSLDDNVESFLS DD
Sbjct: 525 DVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDD 584
Query: 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 294
DPRD VGR +V KGFTF+E + AST+KV CHFS DGKLLA+GGHDKKAVLW T+S
Sbjct: 585 TDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDS 644
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354
K+TLEEH ITDVRFSPS+ RLATSS D+TVRVWD ENP YSLRTFTGHS++VMSL
Sbjct: 645 LKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSSSVMSL 704
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 414
DFHP+K+DL+CSCD + EIRYWSINNGSCA V K G QMRFQPRLGR LAAA EN +
Sbjct: 705 DFHPNKDDLICSCDVDGEIRYWSINNGSCARVSK--GGTAQMRFQPRLGRYLAAAAENVV 762
Query: 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 474
SILDVETQ CR L+GH +HSVCW+ SGE+LASVS++ VRVW++GSGS+GEC+HELSC
Sbjct: 763 SILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSC 822
Query: 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 534
GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+++LA STVNG+VAS
Sbjct: 823 NGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVAS 882
Query: 535 ASHDKCVKIWK 545
ASHDK VK+WK
Sbjct: 883 ASHDKFVKLWK 893
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552535|ref|XP_003544622.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/560 (66%), Positives = 443/560 (79%), Gaps = 19/560 (3%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNLASPSA+D ++R+LRML N+RN+G+ +DG SN VGD+VS +GS +Q P P
Sbjct: 347 LMLAQQNLASPSASD-DNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAGGPAFP 405
Query: 61 RGDNDLLIKLTTTQIQQQQQQLQHYSHHP----LSSQQSQNSNPLLQQQDKILAGG-SMT 115
R D D+L+KL Q+Q QQQ LS+QQSQ SN + QQDK+ GG S+
Sbjct: 406 RSDTDMLMKLKLAQLQHQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSVN 465
Query: 116 MDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPG 174
+DGSMSN+F+GNDQ SKNQ GRKRKQ +SSGPANSSGTANT GP+PSS S + HTPG
Sbjct: 466 VDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTHTPG 524
Query: 175 DVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDN 225
DV+S P L H+G+SSK L+MF +DG G+LTS NQL D+DRFV+DGSLDDN
Sbjct: 525 DVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDN 584
Query: 226 VESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 285
VESFLS DD DPRD VGR +V KGFTF+E + AST+KV CHFS DGKLLA+GGHDK
Sbjct: 585 VESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDK 644
Query: 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345
KAVLW T+S K+TLEEH ITDVRFSPS+ RLATSS D+TVRVWD ENP YSLRTFT
Sbjct: 645 KAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFT 704
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405
GHS++VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K G QMRFQPRLGR
Sbjct: 705 GHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSK--GGTAQMRFQPRLGRY 762
Query: 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465
LAAA EN +SILDVETQ CR L+GH +HSVCW+ SGE+LASVS++ VRVW++GSGS+
Sbjct: 763 LAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSE 822
Query: 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 525
GEC+HELSC GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+++LA
Sbjct: 823 GECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAV 882
Query: 526 STVNGMVASASHDKCVKIWK 545
STVNG+VASASHDK VK+WK
Sbjct: 883 STVNGLVASASHDKFVKLWK 902
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/553 (66%), Positives = 438/553 (79%), Gaps = 12/553 (2%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNLASPSA+D +SR++RML N+RNMG+ +DG SN VGD+VS VGS +Q P P
Sbjct: 355 LMLAQQNLASPSASD-DSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAGGPAFP 413
Query: 61 RGDNDLLIKL-----TTTQIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGS-- 113
R D D+L+KL Q Q Q H LS+QQSQ SN + QQDK+ GG
Sbjct: 414 RSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSS 473
Query: 114 MTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HT 172
+ +DGSMSN+F+GNDQ SKNQ GRKRKQ +SSGPANSSGTANT GP+PSS S + HT
Sbjct: 474 VNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPSTHT 532
Query: 173 PGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSP 232
PGDV+S P L H+G+SSK L+MF +DG G+LTS NQL D+DRFV+DGSLDDNVESFLSP
Sbjct: 533 PGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSP 592
Query: 233 DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 292
DD D RD VGR +V KGFTF+E + AST+KV CHFS DGKLLA+GGHDKKAVLW T
Sbjct: 593 DDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLASGGHDKKAVLWFT 652
Query: 293 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352
+S K+TLEEH ITDVRFSPS+ RLATSS D+TVRVWD ENP YSLRTFTGHS+ VM
Sbjct: 653 DSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGYSLRTFTGHSSPVM 712
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 412
SLDFHP+K+DL+CSCD + EIRYWSINNG+CA V K GA QMRFQPRLGR LAAA EN
Sbjct: 713 SLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSK--GGAVQMRFQPRLGRYLAAAAEN 770
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 472
+SILDVETQ R L+GH + SVCW+ SGE+LASVS++ VRVW++GSGS+GEC+HEL
Sbjct: 771 VVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHEL 830
Query: 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 532
SC GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+++LA STVNG+V
Sbjct: 831 SCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLV 890
Query: 533 ASASHDKCVKIWK 545
ASASHDK VK+WK
Sbjct: 891 ASASHDKFVKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/553 (67%), Positives = 439/553 (79%), Gaps = 11/553 (1%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNLASPSA++ ESR+LRML N+RN+GL +D SN VGD+VS VGS +Q P P
Sbjct: 354 LMLAQQNLASPSASE-ESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGGPPFP 412
Query: 61 RGDNDLLIKL------TTTQIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG-S 113
RGD D+L+KL Q Q Q H LS+QQSQ SN + QQDK+ GG S
Sbjct: 413 RGDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGGGGGS 472
Query: 114 MTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HT 172
+T+DGSMSN+F+GNDQ SKNQI RKRKQ SSSGPANSSGTANT GP+PSS S + HT
Sbjct: 473 VTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHT 532
Query: 173 PGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSP 232
PGDVIS P L H+G+SSK L+MF +DG G+LTS NQL D+DRFV+DGSLD+NVESFLS
Sbjct: 533 PGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSH 592
Query: 233 DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 292
DD DPRD VGR +V KGFTF++ + ASTSKV CHFS DGKLLA+GGHDK+ VLW T
Sbjct: 593 DDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKRVVLWYT 652
Query: 293 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352
+S K+TLEEH+ ITDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VM
Sbjct: 653 DSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVM 712
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 412
SLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K G TQMRFQPRLGR LAAA EN
Sbjct: 713 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAAAAEN 770
Query: 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL 472
+SI DVETQ CR L+GH V VCW+ SGE LASVS++ VRVW++GSGS+GEC+HEL
Sbjct: 771 IVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHEL 830
Query: 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 532
SC GNKFH+ VFHPT+PSLLVIGCY++LELWNM+ENKT+TLSAHD L++SLA STVNG+V
Sbjct: 831 SCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLV 890
Query: 533 ASASHDKCVKIWK 545
ASASHDK +K+WK
Sbjct: 891 ASASHDKFLKLWK 903
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/564 (66%), Positives = 440/564 (78%), Gaps = 22/564 (3%)
Query: 1 MLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLP 60
++ AQQNLASPSA++ ESR+LRML N+RN+GL +DG SN VGD+VS VGS +Q P P
Sbjct: 332 LMLAQQNLASPSASE-ESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFP 390
Query: 61 RGDNDLLIKL-------TTTQIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG- 112
RGD D+L+KL Q Q Q H LS+QQSQ SN + QQDK+ GG
Sbjct: 391 RGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGG 450
Query: 113 -SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST- 170
S+T+DGSMSN+F+GNDQ SKNQIGRKRKQ SSSGPANSSGTANT GP+PSS S +
Sbjct: 451 GSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPST 510
Query: 171 HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGS 221
HTPGDVIS P L H+G+SSK L+MF +DG G+LTS NQL D+DRFV+DGS
Sbjct: 511 HTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGS 570
Query: 222 LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 281
LD+NVESFLS DD DPRD VGR +V KGFTF++ + ASTSKV CHFS DGKLLA+G
Sbjct: 571 LDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASG 630
Query: 282 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341
GHDKK VLW T+S K+TLEEH+ ITDVRFSPS+ RLATSS D+TVRVWD +NP YSL
Sbjct: 631 GHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSL 690
Query: 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 401
RTFTGHST+VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K G TQMRFQPR
Sbjct: 691 RTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK--GGTTQMRFQPR 748
Query: 402 LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461
LGR LAAA EN +SI DVETQVCR L+GH V VCW+ SGE LASVS++ VRVW++G
Sbjct: 749 LGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRVWTLG 808
Query: 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVS 521
SGS GEC+HELSC GNKFH VFHPT+PSLLVIGCY++LELWNM+ENKT+TLSAHD L++
Sbjct: 809 SGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLIT 868
Query: 522 SLAASTVNGMVASASHDKCVKIWK 545
SLA STVNG+VASASHDK +K+WK
Sbjct: 869 SLAVSTVNGLVASASHDKFLKLWK 892
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | ||||||
| UNIPROTKB|Q5M786 | 334 | wdr5 "WD repeat-containing pro | 0.541 | 0.883 | 0.277 | 1.1e-26 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.502 | 0.817 | 0.274 | 2.3e-26 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.493 | 0.619 | 0.326 | 2.8e-26 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.521 | 0.208 | 0.285 | 1.9e-25 | |
| UNIPROTKB|G3N3E5 | 308 | WDR5 "WD repeat-containing pro | 0.506 | 0.896 | 0.282 | 2.4e-25 | |
| UNIPROTKB|Q2KIG2 | 334 | WDR5 "WD repeat-containing pro | 0.506 | 0.826 | 0.282 | 2.4e-25 | |
| UNIPROTKB|P61964 | 334 | WDR5 "WD repeat-containing pro | 0.506 | 0.826 | 0.282 | 2.4e-25 | |
| UNIPROTKB|F1S034 | 334 | WDR5 "Uncharacterized protein" | 0.506 | 0.826 | 0.282 | 2.4e-25 | |
| MGI|MGI:2155884 | 334 | Wdr5 "WD repeat domain 5" [Mus | 0.506 | 0.826 | 0.282 | 2.4e-25 | |
| RGD|1305159 | 334 | Wdr5 "WD repeat domain 5" [Rat | 0.506 | 0.826 | 0.282 | 2.4e-25 |
| UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 87/313 (27%), Positives = 149/313 (47%)
Query: 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 302
+ A V +T +F L T V S FSP+G+ LA+ DK +W + T+
Sbjct: 27 KPAPVKPNYTL-KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84
Query: 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362
H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P + +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSN 142
Query: 363 LLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET 421
L+ S + +R W + G C S + + F I++++ + I D +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 422 QVCRLKLQGHKNQ-VHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKF 479
C L N V V ++ +G+Y LA+ D +++W SKG+C+ +C N+
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEK 259
Query: 480 HSCVF---HPTFPSLLVIGCYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVAS 534
+ C+F T +V G + L +WN+ T+ L H +V S A ++AS
Sbjct: 260 Y-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIAS 318
Query: 535 AS--HDKCVKIWK 545
A+ +DK +K+WK
Sbjct: 319 AALENDKTIKLWK 331
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 80/291 (27%), Positives = 142/291 (48%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
+ S FSPDGK LA+ DK +W + TLE H + I+D+ +S + ++S
Sbjct: 49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108
Query: 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385
D+T+++WD E+ ++T GH V + F+P + +L+ S + +R W +N G C
Sbjct: 109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166
Query: 386 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS 443
+ S T + F +++ + + + I D T Q+ +V V ++ +
Sbjct: 167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPN 226
Query: 444 GEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHP---TFPSLLVIGCYE 498
G++ LA D +R+WS + K C+ + TG+K C+F T +V G +
Sbjct: 227 GKFVLAGTLDNTLRLWSYNNNKK--CLK--TYTGHKNEKYCIFSTFSVTCGKWIVTGSED 282
Query: 499 TL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
L ++N+ T TL+ H+ +V ++A ++AS + D+ VKIWK
Sbjct: 283 NLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 97/297 (32%), Positives = 145/297 (48%)
Query: 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
E Q + + +E+ FSPDG+LLA+G +D LW S +K TLE H+ + V FS
Sbjct: 33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P+ LA+ S+D T+++W++ + D T GHS V S+ F P N ++
Sbjct: 93 PNGQLLASGSSDTTIKLWNSAS-DSLKHTMEGHSDRVESVAFSP-----------NGQL- 139
Query: 375 YWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILDVETQVCRLK--LQG 430
W+ GS + S + F P G++LA+ + E I + D T C LK L G
Sbjct: 140 -WNPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSAT--CGLKHTLGG 195
Query: 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489
H N V + ++ G LAS S D +++W SGS H L NK S F P
Sbjct: 196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLK---HTLEGHSNKIESLAFSPN-G 251
Query: 490 SLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
LL G + T++LW+ T + TL H +V S+ S + ++ S S D +K+W
Sbjct: 252 QLLASGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 84/294 (28%), Positives = 142/294 (48%)
Query: 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
E Q + VES FSPDGK L +G +D +W + + TL+ H+ + + FS
Sbjct: 742 EQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS 801
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374
P LA+ S D T+ +WD+ + L+TF GH ++ S+ F P ++L S ++S I+
Sbjct: 802 PDGKLLASGSYDNTIDLWDSATGEL-LQTFEGHPHSIWSVAFAPDGKEL-ASASDDSTIK 859
Query: 375 YWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK 432
W + G S + + + F P G++LA++ +++ I + + T + L+G
Sbjct: 860 IWDLATGELQQTLDSHSQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRS 918
Query: 433 NQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491
V SV ++ G+ LAS S++ V++W+ +G E + L S F P L
Sbjct: 919 GWVKSVAFSPDGKKLASGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQL 975
Query: 492 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T++LWN T + T HD + ++A S + S S D +K+W
Sbjct: 976 ASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029
|
|
| UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
|
|
| UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
| RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 83/294 (28%), Positives = 141/294 (47%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 383 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 440
C S + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 441 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 495
+ +G+Y LA+ D +++W SKG+C+ + TG+K C+F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 496 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 545 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-61 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-38 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-26 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 9e-61
Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 12/292 (4%)
Query: 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318
+ T V FSPDGKLLATG D +W E+ + TL+ HT + DV S +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
LA+ S+D+T+R+WD E + +RT TGH++ V S+ F P +L S + I+ W +
Sbjct: 65 YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122
Query: 379 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437
G C + + F P + +++ + I + D+ T C L GH +V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 438 VCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496
V ++ GE L+S SD +++W + S G+C+ L N +S F P L+
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237
Query: 497 YE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
E T+ +W++ + + TLS H V+SLA S +AS S D ++IW
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 4e-38
Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357
+ TL+ HT +T V FSP LAT S D T++VWD E + LRT GH+ V +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60
Query: 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-IS 415
L + + IR W + G C S + + F P GRIL+++ + I
Sbjct: 61 ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118
Query: 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474
+ DVET C L+GH + V+SV ++ G ++AS S D +++W + +G C+ L
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-- 173
Query: 475 TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 531
TG+ +S F P LL T++LW+++ K L TL H+ V+S+A S +
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233
Query: 532 VASASHDKCVKIW 544
+AS S D +++W
Sbjct: 234 LASGSEDGTIRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (280), Expect = 1e-26
Identities = 90/354 (25%), Positives = 142/354 (40%), Gaps = 22/354 (6%)
Query: 205 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 264
S + +++ ++ SL S S
Sbjct: 13 SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66
Query: 265 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 321
+ S FSPDG+LL +G D LW +KS H ++ + SP + +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 322 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
SS D TV++WD P +RT GHS +V SL F P + L + I+ W +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 380 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQGHKNQVH 436
G + + + F P G ++A+ I + D+ T ++ R L GH + V
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495
S ++ G LAS S D +R+W + S S + LS + S F P L
Sbjct: 247 S-SFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 496 CYETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 545
T+ LW++ K +LTL H+ VSSL+ S ++ S S D +++W
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 9/209 (4%)
Query: 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 398
RT GH+ V + F P LL + + I+ W + G K +G +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 457
+ + + + I + D+ET C L GH + V SV ++ G L+S S D+ ++V
Sbjct: 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA 515
W + G+C+ L + +S F P + + + T++LW++ K + TL+
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Query: 516 HDKLVSSLAASTVNGMVASASHDKCVKIW 544
H V+S+A S + S+S D +K+W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-24
Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 329
FSPDG LLA+G D LW S + TL H+ + V FSP LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 330 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388
R+WD E S T GH V SL F P L+ ++ IR W + G +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 448
S + F P + + + + + + D+ T L GH ++V S+ ++ G+ LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 449 SVS-DELVRVWSI 460
S S D +R+W +
Sbjct: 429 SGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 2e-18
Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 50/299 (16%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 309
T + T V S FSPDG L+A+G D LW + ++STL H+ +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 369
FSP S LA+ S+D T+R+WD + LRT +GHS++V+S+ F P LL S +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304
Query: 370 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429
+ +R W + G + L L+
Sbjct: 305 DGTVRLWDLETGKL---------------------------------------LSSLTLK 325
Query: 430 GHKNQVHSVCWNTSGEYLAS--VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487
GH+ V S+ ++ G L S D +R+W + +G + + + S F P
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSPD 381
Query: 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
+ T+ LW+++ L L H V+SL S +AS S D +++W
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
T + + V S FSPDG LLA+G D +W + TL HT +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 312 RFSPSLSRLATSSADRTVRVWD 333
+SP RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333
S + TL+ HT +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-08
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333
+ TL+ HT +T V FSP + LA+ S D TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (124), Expect = 4e-07
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 323
S V S FSPDG+++++G D LW + ++ L+ HT +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 324 SADRTVRVWDTENPDYSL 341
S+D T+R+WD + S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 301 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 352
L+ HT I D++F+P S LA+ S D T+RVW+ + D S++ GH +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSINN 380
+D++P ++CS +S + W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 27/223 (12%)
Query: 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 307
S++ V + F DG+ AT G +KK ++ ES +K + H W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540
Query: 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 367
+ ++ S++A+S+ + V+VWD + H V S+D+ + LL S
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594
Query: 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV 423
++ ++ WSIN G G K ++ ++F GR LA + Y + + + +
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654
Query: 424 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 466
C + GH V V + S ++S +D +++W + G
Sbjct: 655 C--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 308 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 360
I DV F+P +L T+S D T+ W T+N + GH+ V + FHPS
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391
++L S + + W + G V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-05
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 421 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
+ L+GH V SV ++ G+YLAS S D +++W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-05
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459
L+GH V SV ++ G LAS S D VRVW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 3e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 290
+ + + T V S FSPDGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 3e-04
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 507 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
TL H V+S+A S ++AS S D V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 290
+ T V S FSPDG LLA+G D +W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 6e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 506 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
+ TL H V+S+A S +AS S D +K+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.003
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
LRT GH+ V S+ F P +LL S ++ +R W
Sbjct: 4 LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 512 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
TL H V+ +A S ++A+ S D +K+W
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.84 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.83 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.82 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.8 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.74 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.73 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.72 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.71 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.71 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.65 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.64 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.62 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.61 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.6 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.6 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.58 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.54 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.51 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.5 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.49 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.48 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.46 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.45 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.35 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.33 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.29 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.27 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.27 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.24 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.24 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.24 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.23 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.19 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.17 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.1 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.08 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.01 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.9 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.89 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.86 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.84 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.83 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.81 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.76 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.74 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.72 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.7 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.69 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.69 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.68 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.68 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.67 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.66 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.58 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.58 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.55 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.54 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.53 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.51 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.51 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.5 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.49 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.45 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.45 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.44 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.42 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.39 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.37 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.35 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.35 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.33 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.26 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.26 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.17 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.15 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.12 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.12 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.12 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.11 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.11 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.08 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.04 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.99 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.97 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.93 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.91 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.87 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.83 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.77 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.69 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.65 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.61 | |
| PRK10115 | 686 | protease 2; Provisional | 97.61 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.55 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.5 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.5 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.46 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.45 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.43 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.42 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.42 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.41 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.37 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.36 | |
| PRK10115 | 686 | protease 2; Provisional | 97.33 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.3 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.23 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.21 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.19 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.16 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.11 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.08 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.06 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.03 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.02 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.99 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.96 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.96 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.89 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.76 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.74 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.7 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.56 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.53 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.52 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.49 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.48 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.36 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.35 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.25 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.24 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.2 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.16 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.14 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.04 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.02 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.88 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.87 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.67 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.6 | |
| PLN02153 | 341 | epithiospecifier protein | 95.56 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.53 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.51 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.34 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.34 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.27 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.18 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.06 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.03 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.82 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.76 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.59 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.58 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.44 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 94.32 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.22 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.06 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.01 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.9 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.77 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 93.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.62 | |
| PLN02193 | 470 | nitrile-specifier protein | 93.6 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.56 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.53 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.41 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.34 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.28 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.27 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.26 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.23 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.21 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.18 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.15 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.08 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.06 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.95 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.79 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 92.75 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.62 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.58 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.55 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 91.96 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.84 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.45 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 91.44 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.94 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.86 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.5 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 90.47 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.46 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.32 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 89.57 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.56 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.55 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.48 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.48 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.25 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 89.23 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.0 | |
| PLN02153 | 341 | epithiospecifier protein | 88.86 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.46 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.46 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 88.43 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 87.92 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.91 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 87.62 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.29 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.21 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.93 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 86.72 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 86.46 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 86.04 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 85.61 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 85.23 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 85.16 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 84.88 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 84.71 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=362.41 Aligned_cols=302 Identities=24% Similarity=0.395 Sum_probs=273.1
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~ 313 (545)
.++.|.++|+||..+.. +..+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|
T Consensus 132 tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 132 TGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW 208 (480)
T ss_pred ecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence 45568899999998764 46788999999999999999999999999999999999988776 788999999999999
Q ss_pred cC-----CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 314 SP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 314 sp-----~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
.| ..++||+++.||.|+|||+..+. ++..+.+|+.+|+|+.|-- ..++++++.|++|++|+...|.+.+.++
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhc
Confidence 76 56799999999999999999766 4899999999999999974 5689999999999999999999998887
Q ss_pred ccCC-eeEEEEe-----------CCCC-------------------------EEEEEECCCeEEEEECCC-CEEEEEecC
Q 009059 389 CQSG-ATQMRFQ-----------PRLG-------------------------RILAAAIENYISILDVET-QVCRLKLQG 430 (545)
Q Consensus 389 ~~~~-v~~l~~s-----------p~~~-------------------------~l~~~~~dg~I~i~d~~~-~~~~~~~~~ 430 (545)
.+.. |+.++++ |.+. .+++++.|.++.+|+... .+++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 5543 6665544 3333 489999999999999865 458888999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
|..-|+.+.|+||++|+|+++ |..|++||-+++ +.+..+.+|-..|+.++|+.|.+.|++++.|.++++||+++.+
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999 999999999998 7788999999999999999999999999999999999999999
Q ss_pred EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. .+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 88 7889999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=352.45 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=265.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCC----CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEE
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~ 408 (545)
..+++...+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999763 234788999999999999999999988764 457999999877 899999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 451 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-----------p~g~-------------------------~l~s~s- 451 (545)
+.|++|++|+...|.+...+++|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 2233 499999
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~ 530 (545)
|.++.+|+..... +++..+.+|...|+.+.|+||++++++++.|..|++||.++++.+ .+.+|-+.|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 6699999976442 577788899999999999999999999999999999999999999 8889999999999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 009059 531 MVASASHDKCVKIWK 545 (545)
Q Consensus 531 ~las~s~Dg~I~iWd 545 (545)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=345.94 Aligned_cols=282 Identities=27% Similarity=0.434 Sum_probs=264.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~ 336 (545)
-.+-+.+|..|.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||||+.||++++|++.+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 3467789999999999999999999999999999999999999999999999999996 66899999999999999997
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.. ++..+.+|...|..++|+|+|.+| .+++.|.+-++||++++..+...+ |..+|.+++|.++|..+++|+.|..-+
T Consensus 251 e~-~l~~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 251 ET-PLQDLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred Cc-chhhhhcchhhheeeeecCCCcee-eecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 65 589999999999999999998655 599999999999999987766555 456799999999999999999999999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLV 493 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~ 493 (545)
|||++++.++..+.+|..+|.+++|+|+|..||+|+ |++++|||++.. ..++++..|.+-|+.+.|+| .|.+|++
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeEEEE
Confidence 999999999999999999999999999999999999 999999999887 66899999999999999998 7889999
Q ss_pred EEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.|++++||...+..++ .+.+|++.|.++++++|+.+++|++.|.+||+|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999998 8889999999999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=311.93 Aligned_cols=291 Identities=18% Similarity=0.331 Sum_probs=263.4
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++..++|++|.++|.++.|++|.++|++++.||++.|||.-+...+..+.-....|..++|+|.++++|+|+-|+.+.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 44556899999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred EECCCC--C---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeC-CCCE
Q 009059 332 WDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP-RLGR 404 (545)
Q Consensus 332 wd~~~~--~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp-~~~~ 404 (545)
|++.+. . ...+.+.+|++.+.|+.|.+++ .++ +++.|.++.+||+++++.+..|..+ +.|.++.+.| +++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 999854 2 2346789999999999999863 455 8999999999999999999998754 5699999999 8999
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
+++|+.|+..++||++.+.++..|.+|...|++++|.|+|.-+++|+ |++.++||++.... ..++.-.....+|++++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVA 280 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEE
Confidence 99999999999999999999999999999999999999999999999 88999999998743 22233333456799999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|.+|..+|||.-|+||+.|.++|||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999888877 8889999999999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=299.24 Aligned_cols=288 Identities=23% Similarity=0.434 Sum_probs=264.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++..+.+|++.|+.+.|+|+|.+||+|+.|..|.||++ ...+-...+++|.++|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 35667899999999999999999999999999999995 44556678899999999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++++. ++.+++|..-|+.+.-..-|..++++++.|+++++||+++.++++++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999886 8999999999999997777888999999999999999999999999988889999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc-ceEEEEeeCC----CceEEEEEcCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 487 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~-~~i~~~~~~~----~~v~~~~~sp~ 487 (545)
|++||++.....+.+.+|.+.|+.+..+++|.++.+-+ |.++++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999999 999999999875432 4576666553 33567899999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+.++-+|+.|..+++||......+ .+.+|.+.|++++|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987766 89999999999999999999999999999976
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=314.12 Aligned_cols=261 Identities=25% Similarity=0.359 Sum_probs=243.6
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+++...++|...++ ..+.+|++|...|.++.|+|. +.-||+|+.||+|++|++++-.++..+.+|...|..++|
T Consensus 193 ~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf 269 (459)
T KOG0272|consen 193 GSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAF 269 (459)
T ss_pred eecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeee
Confidence 445678888988777 467899999999999999996 668999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~ 392 (545)
+|+|++|+|++.|.+-++||++++.. +....||...|.+++|+++| .++++|+.|..-+|||+++++++..+..+ ..
T Consensus 270 HPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 270 HPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred cCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccc
Confidence 99999999999999999999998775 77788999999999999997 57889999999999999999999988754 56
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
|..+.|+|+|-.+++|+.|++++|||++....+..+.+|..-|+.++|+| .|.+|++++ |++++||..++. .++.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~k 424 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLK 424 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccch
Confidence 99999999999999999999999999999999999999999999999998 789999999 999999999887 7889
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 425 sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=285.12 Aligned_cols=284 Identities=21% Similarity=0.363 Sum_probs=245.1
Q ss_pred EEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC-----CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 254 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~-----~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
....++++|++.|+.++..+. ...|++++.|.++.+|++. .|..++.+.+|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345789999999999999986 5688999999999999874 5778899999999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCC--C
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR--L 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~--~ 402 (545)
++++||+.+++ ..+.|.+|...|.+++|+++...++ +|+.|.+|++|++... +..++.. ..-|.|++|+|+ .
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNRQIV-SGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCceee-cCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence 99999999885 5899999999999999999976555 9999999999999854 4444432 234999999998 6
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
..|+.++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+ ||.+.+||++.+ ++++.+. +...|.+
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~s 238 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNS 238 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEee
Confidence 7888999999999999999999999999999999999999999999999 999999999887 5566554 6789999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec----cC-----CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS----AH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~----~h-----~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+|+...|+.+ .+..|+|||+.++.++ .+. +. .....+++|++||..|.+|-.|+.|++|.
T Consensus 239 l~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 239 LCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999998755554 4456999999998876 221 22 23456789999999999999999999994
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=280.01 Aligned_cols=268 Identities=19% Similarity=0.386 Sum_probs=243.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l 354 (545)
-+||++++|.+|++|...+|.+..++......|+.+...|+++.||+++. -.||+||+++... ++.+|.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999988899999999999999999865 5799999998765 789999999999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-CCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~ 433 (545)
.|..+|.. +++|++||+++|||++...+.+.+.+..+|+++..+|+...|+++..+|.|++||+.+..+...+.. ...
T Consensus 90 gF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeE-EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999764 5599999999999999999999999999999999999999999999999999999998877665543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC---CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~---~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.|.++...|||.+|+.+. .|..++|++-... ....+..+..|...+..|.++|++++|++++.|.+++||+.++.-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 345677788999999999999999999999999999999999872
Q ss_pred EE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.. .+.+|...++.++||.|+.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 7789999999999999999999999999999997
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=300.77 Aligned_cols=292 Identities=26% Similarity=0.462 Sum_probs=271.8
Q ss_pred ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeE
Q 009059 250 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 329 (545)
Q Consensus 250 ~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I 329 (545)
..++.+...+.+|..+|+.+-|.|+-..+++++.|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|-.+
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEE
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA 408 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~ 408 (545)
++||..+...+++...+|...|.+++|-|.|.+++ +|+.|.+|+.|++.++.++.++..+.. +.-+..+.||..++++
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hheeHHHHHHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 99999976667888999999999999999986555 999999999999999999999986655 7888999999889999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC---------------CCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~---------------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+.|.+|++|-+.++.+...+..|.-+|-|++|.|. +.++++++ |++|++||+.++ .|+.++
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL 330 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTL 330 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEE
Confidence 99999999999999999999999999999999762 35899999 999999999998 999999
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.+.|..++|+|.|+||+++..|+++++||+++++++ .+.+|+..|++++|+.+..+++||+-|.++++|.
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999999999998 7889999999999999999999999999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=319.09 Aligned_cols=286 Identities=30% Similarity=0.533 Sum_probs=256.5
Q ss_pred EEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 256 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 256 ~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
...+.. |...|.|+.|+++|++|++++.|+.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444544 48899999999999999999999999999998877 777888999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~d 411 (545)
|+......++++.+|...|++++|+|++ .++++|+.|++|++||+++++++..+..+. .++.++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966656789999999999999999998 788899999999999999999999998654 79999999999999999999
Q ss_pred CeEEEEECCCCE--EEEEecCCCCC--EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEEEE
Q 009059 412 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 483 (545)
Q Consensus 412 g~I~i~d~~~~~--~~~~~~~h~~~--I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~~ 483 (545)
+.|++||+.++. +...+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776655 99999999999999999 779999999887 667777777664 44455
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s--~Dg~I~iWd 545 (545)
.++.+.++++++.|+.|++||+.++..+ .+.+| ...+..+.++|..+++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987776 78889 89999999999999999998 789999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=292.44 Aligned_cols=288 Identities=21% Similarity=0.390 Sum_probs=263.8
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
||++..+. ++.+.+|-..|+|++.+|.- .++++|+.|.++++||+++...+..+. +...|..+.+.|-...+++++.
T Consensus 220 wDLe~nkv-IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKV-IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred Eechhhhh-HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99998876 99999999999999999985 566699999999999999999999988 5567999999998899999999
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|++|++||++.++....+..|...|.+++.+|....+++++-+.|+-|++..+ ..+..+.+|...|.++....|+-
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~v- 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDGV- 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCce-
Confidence 99999999999999999999999999999999999999999778999999887 66777889999999999988874
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEec---------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTLTLS---------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~---------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++|+.+|.|.+||.+++-..... ..+..|.+.+|...+..|++|..|.+|++|+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 888999999999999988655211 2356799999999999999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=273.32 Aligned_cols=283 Identities=23% Similarity=0.339 Sum_probs=246.1
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~ 312 (545)
..+.|.++|+|+..+|.. .++++...+.|+.+.+.||+++||+++. -.|++||+.++. ++.++++|...|+.+.
T Consensus 15 sA~YDhTIRfWqa~tG~C---~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 15 SAGYDHTIRFWQALTGIC---SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred eccCcceeeeeehhcCeE---EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 345678999999999975 5556667778999999999999999875 689999998765 5789999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--c
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~ 390 (545)
|..+|+++++|++||+++|||++.... .+.+. |..+|+++..+|+...|| +|+.+|.|++||+.+..+...+.. .
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~-qR~~~-~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSC-QRNYQ-HNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCccc-chhcc-CCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence 999999999999999999999998543 44444 789999999999977666 999999999999998877665543 3
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
..+.++.+.|+|..++++...|..++|++-+. +++.+++.|.+.+..+.+||++++|++++ |.+++||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 45899999999999999999999999998753 45677889999999999999999999999 999999999876
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
.+.-..+.+|...++.|+|+.++.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 248 --~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 --FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 3455567889999999999999999999999999999999999887 777888887777754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=292.27 Aligned_cols=284 Identities=32% Similarity=0.538 Sum_probs=254.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46779999999999999999999999999999999999888888899999999999999999999999999999999997
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... +..+..|...+.++.|++++ .++++++.++.|++||+.+++....+. +...+.++.|+|++..+++++.++.|+
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 654 67778899999999999984 577677789999999999888887776 445799999999977777777799999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+||+++++.+..+..|...|.+++|+|+++.+++++ ++.|++||+..+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999876 5666666788899999999998877777
Q ss_pred EcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 495 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.++.|++||+.+++.. .+..|...|.+++|++++++|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987776 6668999999999999999999999999999997
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=300.68 Aligned_cols=277 Identities=21% Similarity=0.433 Sum_probs=247.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+..|..+.|.|+|+.|++|+..|.+.||+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999997777777889999999999999999999999999999999987443 44
Q ss_pred EeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+..| ...|.+++|+|+. ..|++|+.||+|+|||....+....+..+ -.|.++.|+|..+.+++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 44544 4899999999975 55669999999999999988877777644 459999999999999999999999999999
Q ss_pred CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCC
Q 009059 421 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 498 (545)
Q Consensus 421 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg 498 (545)
++.++.++.+|+..|..+.|++++.+|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999865 6677888999999999999965 4677888999
Q ss_pred eEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|-
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999866655 4458999999999999999999999999999993
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=272.43 Aligned_cols=267 Identities=15% Similarity=0.260 Sum_probs=229.1
Q ss_pred CCcccceeeeeecCCc--eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
...+|+.+-+|+.... ..-..++.|.||...|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++
T Consensus 33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA 112 (315)
T ss_pred EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence 4567788888876543 22345788999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-cCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
|++|.+.+++|+.|.+|++|++..... ..... .+.+.|.|+.|+|+. +.++++++.|++|++||+++.+....+..+
T Consensus 113 ~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 113 FSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred ecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 999999999999999999999985332 33222 237899999999985 567779999999999999998888777644
Q ss_pred -CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceE
Q 009059 391 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 469 (545)
Q Consensus 391 -~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i 469 (545)
+.++.++++|||..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+.+..|+|||+.+. .++
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v 267 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV 267 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence 458999999999999999999999999999999988776 789999999999999998888888999999887 444
Q ss_pred EEEee---------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 470 HELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 470 ~~~~~---------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.+++. ......+++|+++|..|+++..|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 43331 13345788999999999999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.35 Aligned_cols=300 Identities=20% Similarity=0.322 Sum_probs=251.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec---cCCccEEEEEEcC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSP 315 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~---~h~~~V~~l~~sp 315 (545)
|..+..+ .|.+|+.-.+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.+|+|+|
T Consensus 169 Dn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 169 DNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred CCeEEEe---eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 3444444 377888889999999999999999999999999999999999999999999997 8999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe------------------------------------------eeeEeccCcccEEE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMS 353 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~------------------------------------------~~~~~~~h~~~V~~ 353 (545)
|+..|+|++.|.+++|||+.+.+. .+..+.+|...|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 999999999999999999985432 12345679999999
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCCceee-------------------------------EEe--------------
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------------------------------VFK-------------- 388 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-------------------------------~~~-------------- 388 (545)
+..++++.+ +++|+.||.|.-|++.++..-+ .+.
T Consensus 326 Ltv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 326 LTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred EEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 999999854 5599999999999987543110 000
Q ss_pred -------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEec
Q 009059 389 -------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ 429 (545)
Q Consensus 389 -------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~ 429 (545)
..-...+++++|++..+++|+.|+.|+||.+.... ....+.
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 00012368899999999999999999999998754 344566
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.|.++|++++++||+.||+++. .+.+.+||+.+... ......-|...|.+++|+|+..++++|+-|-.|.||+++..
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 7999999999999999999999 89999999988643 44455668999999999999999999999999999999765
Q ss_pred eEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 KTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
... ...+|...|+.+.|- |...|++.+.|..||+|.
T Consensus 563 ~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 563 AKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred hhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 433 455899999999996 566899999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=291.86 Aligned_cols=282 Identities=25% Similarity=0.456 Sum_probs=250.4
Q ss_pred EEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--C--eEEEEec----------cCCccEEEEEEcCCCCEE
Q 009059 256 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--F--TVKSTLE----------EHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~--~--~~~~~l~----------~h~~~V~~l~~sp~~~~l 320 (545)
++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. . .....++ .....|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 899999999999999864 1 1111111 123579999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe-eEEEEe
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 399 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v-~~l~~s 399 (545)
|+|+.||.+++|+.... .+.++..|+++|.++.|+..|.+++ +++.|+++.+||..+++....+..+... ..+.|.
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999998743 3788999999999999999987666 9999999999999999999988877766 779998
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+ ..+++.+.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|++++ |++++||+.... .+.+.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 77 7899999999999999999999999999999999999999999999999 889999998766 788889999999
Q ss_pred eEEEEEcCCCC---------EEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~---------~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..+.|+|.+. .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+|||+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999764 5899999999999999999999 7889999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=285.50 Aligned_cols=304 Identities=21% Similarity=0.379 Sum_probs=263.0
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.++++++++++-+++|... ..+.||...|++|+|-|... .++||+.|+.|.+|+-..++...++..|..-|.|++|
T Consensus 122 GEGrerfg~~F~~DSG~Sv---Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSV---GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred ecCccceeEEEEecCCCcc---ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 4566778888888888754 45779999999999999766 5999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
+|||.+|++++.||+|.+||-.+++. +..+. +|.+.|+++.|+||+..++ +++.|.++++||+.+.++++++...
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence 99999999999999999999998875 66666 8999999999999987766 8999999999999999999999876
Q ss_pred CCe----eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 391 SGA----TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 391 ~~v----~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..+ ..+.|. +..|++.+.+|.|.+++......+..+.+|...|+++..++++++|++|+ ||.|.-|+..++..
T Consensus 277 ~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred CchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 653 234444 57899999999999999999999999999999999999999999999999 99999999865422
Q ss_pred cce--------EE-------------------------------------------------------------------
Q 009059 466 GEC--------IH------------------------------------------------------------------- 470 (545)
Q Consensus 466 ~~~--------i~------------------------------------------------------------------- 470 (545)
... +.
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 110 00
Q ss_pred -----------------------------------------------EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 471 -----------------------------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 471 -----------------------------------------------~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
....|..+|++++++|++.+|+++...+.+.+|
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 112345678888888999888888888888899
Q ss_pred eCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 504 NMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 504 d~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.+.+.. .+.-|.+.|.+++|+|+..+||||+-|-.|.||+
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 98888776 4456999999999999999999999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=286.22 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=252.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+..|++++|+.+|.+||+|+.||.++||+. +|.++.++..|.++|.+|.|+.+|.||++++.|+++.+||..++.. ..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EE
Confidence 367999999999999999999999999995 5788899999999999999999999999999999999999988775 67
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
.+..|..+-..+.|-.+ .-|++++.|+.|+++.+....++.++. |++.|.++.|+|.+..|++++.|++++||....
T Consensus 313 ~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 78888888788999765 346689999999999999988888776 556799999999999999999999999999999
Q ss_pred CEEEEEecCCCCCEEEEEEcCCC---------CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSG---------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g---------~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
......+.+|...|+.+.|+|.| ..+++++ |++|++||+..+ .+++.+..|..+|++++|+|+++++
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEE
Confidence 99999999999999999999965 3566666 999999999888 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+.||.|.+|++.+++.+.-....+.|..++|+.+|.+|..+-.||.+++-|
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 999999999999999999997777788899999999999999999999988754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=296.47 Aligned_cols=290 Identities=20% Similarity=0.338 Sum_probs=253.7
Q ss_pred EEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 254 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35788999999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEEC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~ 410 (545)
||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+..+ +.+..+.|-+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999886 55554 34578999999999888889999999999999999998887644 56999999999999999999
Q ss_pred CCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC--CceEEEEEcC
Q 009059 411 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 486 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~--~~v~~~~~sp 486 (545)
|+.++||+.+....+.... .+.-...|+..+|++.++++-+ |+.|.+|.+...-....-..+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999999887665433 2344677899999999999988 9999999976543333334455554 3456678999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
||.+|++|..+|.+.+||.++-+++ .+.+|...+..+.|+|.. ..|||++.||.|++||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999988 888999999999999976 5899999999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=260.43 Aligned_cols=283 Identities=24% Similarity=0.445 Sum_probs=239.7
Q ss_pred eEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC---CeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 253 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~---~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
+..++.+.+|.++|..++|+|- |..||+|+.|+.|++|+... ..++..+ .+|+..|..++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3457889999999999999997 88999999999999999884 4555555 57999999999999999999999999
Q ss_pred eEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEEe-ccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~~-~~~~v~~l~~sp~~ 402 (545)
++.||.-..+. .++.++.||..+|.+++|+++| .+||+|+.|+.|.+|.+..+ ++...+. |...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876544 3577899999999999999997 56779999999999999754 3455554 34568999999999
Q ss_pred CEEEEEECCCeEEEEECC---CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 403 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
..|++++.|++|++|+-. ...+..++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3478999999999999999999999999999 889999986543 11236678
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCC------eEE--EeccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTEN------KTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~------~~~--~~~~h~~~V~~l~~spd-~~~las~s~Dg~I~iWd 545 (545)
++.+.|. + ..|++++.|+.|++|..... +.+ ....|...|+++.|.|. .++|++|+.||.|++|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999998 4 45999999999999976542 111 23479999999999995 67999999999999994
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=283.00 Aligned_cols=289 Identities=20% Similarity=0.332 Sum_probs=243.6
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+.+++..|++.|+-+.||++|+|||+++.|.+..+|++.. .+...++.+|..+|..+.|+||.++|++|+.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 45667889999999999999999999999999999999998753 456789999999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeEEEEeCCCCEE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRI 405 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~l~~sp~~~~l 405 (545)
.+.+||+.++......-.+|...+.+++|.||+..++ +|+.|++|..||+.... ....+. ...+.++++.++|.++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 9999999998753333344568899999999987765 99999999999998433 333332 2358899999999999
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHS 481 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~ 481 (545)
++.+.|..|++|+.++...+..+. ...+|++++.+.+++++.+.- +..|.+||+... ..+..+.+|... |.+
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred EEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEEe
Confidence 999999999999999876665444 457899999999999988877 889999999854 556666666543 333
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
|---.+..++++|+.|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+||+||+|+||.
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 333445589999999999999999999999 889999999999999976 5899999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=290.49 Aligned_cols=287 Identities=22% Similarity=0.342 Sum_probs=249.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~d-g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+..-+...++|...+++++++|||.++|||+.||.|+||
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 3445555556789999999999999998754 799999999888888889999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~ 410 (545)
|..++- |+.+|..|+..|+.+.|+..+..++ +.+.||+|+.||+...++.+++..+.+ ..|++..|.|..+++|+.
T Consensus 378 n~~Sgf-C~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 378 NTQSGF-CFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred eccCce-EEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 999765 5999999999999999999976555 889999999999999999999988776 467888888888888887
Q ss_pred CC-eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 411 EN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 411 dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|. .|++|++++|+.+-.+.||.++|.+++|+|.+..|++++ |.+|++||+-... ..+.++ .+...+..+.|+|+|
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPDG 532 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCCC
Confidence 76 799999999999999999999999999999999999999 9999999987642 222333 356789999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eec--------------------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLS--------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~--------------------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|++++.||.|.+||++.+..+ .+. ......+.|++++||.+|++||....|+||+
T Consensus 533 ~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 99999999999999999876544 111 1235789999999999999999999999985
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=316.85 Aligned_cols=303 Identities=17% Similarity=0.255 Sum_probs=249.2
Q ss_pred ceeeeeecCCceeeEE--EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----e----EEEEeccCCccEE
Q 009059 240 RVGRSAEVGKGFTFTE--FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWIT 309 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~--~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~----~~~~l~~h~~~V~ 309 (545)
...++|+..+-..... ...+..|.+.|++++|+|+|++||+|+.|+.|+||+.... . ....+. +...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 3455555443322111 1234569999999999999999999999999999997532 1 122333 346799
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 310 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+++|++ ++.+|++++.||+|++||+.++.. +..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 999987 478999999999999999997664 788899999999999998556678899999999999999999998888
Q ss_pred ccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCE-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-
Q 009059 389 CQSGATQMRFQP-RLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 464 (545)
Q Consensus 389 ~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~- 464 (545)
....+.++.|.+ ++..+++++.||.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|++||+....
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 777899999964 67889999999999999998765 567788999999999997 677888888 9999999997532
Q ss_pred --CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--------------EeccCCCCeeEEEEeCC
Q 009059 465 --KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 465 --~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spd 528 (545)
...++..+.+|...+..+.|++++.+|++|+.|+.|++|+....... ....|...|.+++|+++
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 23567788899999999999999999999999999999998655332 11235567999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
+.+|++|+.||.|+||+
T Consensus 775 ~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 775 SSTLVAANSTGNIKILE 791 (793)
T ss_pred CCeEEEecCCCcEEEEe
Confidence 99999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.99 Aligned_cols=300 Identities=15% Similarity=0.205 Sum_probs=262.0
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
++.|-..-+|+..+|. ....+.+|++.|+|+.|+.||.+||||+-+|.|+||+..++.....+...-..|.-+.|+|
T Consensus 82 GGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred cCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence 4456678899999987 5667889999999999999999999999999999999999999988877777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCe
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGA 393 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v 393 (545)
.+..|+.|+.||.+-+|.+.+... .+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++.++..+.. +...
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCcC
Confidence 999999999999999999998654 789999999999999999987666 899999999999999999888763 3347
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--------CCCCCEEEEE---EcCCCCEEEEEe-CCcEEEEEcC
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVC---WNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~h~~~I~~l~---~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
.++.++..+..++.+..++.+++....+++.+.... .+...+.|+. |+..-.+.|+|+ ||+|.|||+.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 788899888889999999999999999998887766 2444445554 444557788888 9999999997
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.. .++..-.|...|..+.|-+ ..+|++++.+|.|+.||.+++.++ .+.+|...|.+++++|+.++++|+|.|++
T Consensus 317 ~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 317 AS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred cc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 74 2334445788899999999 788999999999999999999998 88899999999999999999999999999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
.+||+
T Consensus 392 a~VF~ 396 (399)
T KOG0296|consen 392 ALVFE 396 (399)
T ss_pred EEEEe
Confidence 99985
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=296.12 Aligned_cols=269 Identities=23% Similarity=0.396 Sum_probs=235.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-------------------------------eEEEEeccCCccEEE
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQWITD 310 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~-------------------------------~~~~~l~~h~~~V~~ 310 (545)
-...++|+.|++|+.+||.|-.|..|++|.+... ....++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3456999999999999999999999999987521 122346789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-
Q 009059 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 389 (545)
Q Consensus 311 l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~- 389 (545)
+.|+|+.++|++++.|++||+|.+.+... +..+.+|..+|+.+.|+|.| +++++++.|++-++|......+++.+..
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhccc
Confidence 99999999999999999999999998765 88899999999999999996 6777999999999999999888888764
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
.+.+.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|+ |+.|.+||+.++ ..
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~ 611 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SL 611 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cc
Confidence 46699999999999999999999999999999999999999999999999999999999999 999999999988 77
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-------------------------EeccCCCCeeEE
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------------------TLSAHDKLVSSL 523 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------------------------~~~~h~~~V~~l 523 (545)
+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-... .+.....+|..+
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l 691 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGL 691 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEE
Confidence 8888899999999999999999999999999999998542211 233344578888
Q ss_pred EEeCCCCEEEEE
Q 009059 524 AASTVNGMVASA 535 (545)
Q Consensus 524 ~~spd~~~las~ 535 (545)
.|...+-.|++|
T Consensus 692 ~FtrrNl~L~~g 703 (707)
T KOG0263|consen 692 HFTRRNLLLAVG 703 (707)
T ss_pred EEeccceeEEec
Confidence 887666445444
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=289.01 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=258.7
Q ss_pred EEEEeecCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~s-pdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+.++.+-|..+.|..++|- |+..+||+++..+.+++|+..+..+. .+.+|++.|.++....+|-+|+||+.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 3445566888899999874 57789999999999999998876666 889999999999966677899999999999999
Q ss_pred ECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEE-------eccCCeeEEEEe
Q 009059 333 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 399 (545)
Q Consensus 333 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~-------~~~~~v~~l~~s 399 (545)
.++++. .++....+|...|.+++++..+..+|++++.|+++++|++...+.. ..+ .|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 985433 2455678999999999999988999999999999999999762211 111 256679999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
|+...+++|+.|.+.+||+++......++.+|...|.|+.|+|..+.+++++ |.+|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999887 999999999999
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..+.|-.++..|++++.||-|++|+++++++. ++.+|...|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999 8999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=255.19 Aligned_cols=262 Identities=24% Similarity=0.361 Sum_probs=232.9
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------eEEEEeccCCccE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWI 308 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V 308 (545)
..+.|..+-+||..+... +..++-....|..|+|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+
T Consensus 72 SaSqDGklIvWDs~TtnK---~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl 148 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNK---VHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYL 148 (343)
T ss_pred eeccCCeEEEEEcccccc---eeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcccee
Confidence 345567788898777653 4556677889999999999999999999999999999854 4457789999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
.|+.|.+ ...|+|++.|.++.+||++++.. +..|.+|.+.|.++++.|...+.+++|+-|+..++||++.+.++..|.
T Consensus 149 ScC~f~d-D~~ilT~SGD~TCalWDie~g~~-~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 149 SCCRFLD-DNHILTGSGDMTCALWDIETGQQ-TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred EEEEEcC-CCceEecCCCceEEEEEcccceE-EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence 9999987 46799999999999999999876 899999999999999999555677799999999999999999999987
Q ss_pred c-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 389 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 389 ~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
. ...|+.++|.|+|.-|++|+.|++.++||++....+..+.. ...+|++++|+..|++|++|. |..+.+||.-.+
T Consensus 227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~- 305 (343)
T KOG0286|consen 227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG- 305 (343)
T ss_pred ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-
Confidence 4 45699999999999999999999999999999888877763 335899999999999999998 889999998776
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+.+..+.+|++.|.++..+|||.-+++|+.|..++||.
T Consensus 306 --e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 306 --ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 77888999999999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=289.15 Aligned_cols=303 Identities=20% Similarity=0.313 Sum_probs=249.0
Q ss_pred CcccceeeeeecCCceeeEEEEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
..+....++|.+.+|. .++.+++ |+++|.-++|+|.+.+|++|+.|+.|+|||+..+.+...|++|.+.|..+.|+
T Consensus 80 a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~ 156 (775)
T KOG0319|consen 80 ASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFH 156 (775)
T ss_pred eeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeC
Confidence 4456788999999984 5667777 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC
Q 009059 315 PSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 315 p~~~--~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
|+-. .|++|..|+++++||+.+...++.....|...|++++|.+++..++ +++.|..+.+||+.+.++.++......
T Consensus 157 ~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye~ 235 (775)
T KOG0319|consen 157 PHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYES 235 (775)
T ss_pred CccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhhh
Confidence 9654 5899999999999999976667888999999999999999977666 888999999999865443322211100
Q ss_pred ee------------------------------------------------------------------------------
Q 009059 393 AT------------------------------------------------------------------------------ 394 (545)
Q Consensus 393 v~------------------------------------------------------------------------------ 394 (545)
+.
T Consensus 236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i 315 (775)
T KOG0319|consen 236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI 315 (775)
T ss_pred eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence 00
Q ss_pred ------------------------------------------------------EEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 395 ------------------------------------------------------QMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 395 ------------------------------------------------------~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
++.....|..|++++.|..+++|.++
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 11111222244555555566666442
Q ss_pred CCE----------------------------------------------------EEE----EecCCCCCEEEEEEcCCC
Q 009059 421 TQV----------------------------------------------------CRL----KLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 421 ~~~----------------------------------------------------~~~----~~~~h~~~I~~l~~sp~g 444 (545)
++. ... ....|...|+|++++|+.
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence 110 000 112477889999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeE
Q 009059 445 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 522 (545)
Q Consensus 445 ~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 522 (545)
+++|+|+ |.+.+||++... ....++.+|...|+++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..
T Consensus 476 kLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred ceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 9999999 999999999854 788999999999999999999999999999999999999999999 88999999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|-.++..|++++.||.||||+
T Consensus 553 a~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEe
Confidence 99999999999999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=272.94 Aligned_cols=280 Identities=21% Similarity=0.327 Sum_probs=254.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g~I~vwd~~~~~~ 339 (545)
.....|+|++|++.-+.||+|-..|...+|.+....+++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+..+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 344789999999999999999999999999999999999998888899999999999999998764 8999999998776
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
+....+|...+++++++||| .++++|+.||.|++||...+-|..+|. +...++.+.|+..++.+++.+.||+|+.||
T Consensus 343 -VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 -VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred -eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 67778999999999999997 466799999999999999999999986 556799999999999999999999999999
Q ss_pred CCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 419 VETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 419 ~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
+...+..+++... .-...|++..|.|.++++|+ |. .|.||++.++ ..+..+.+|.++|.+++|+|.+..|++++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9999999988763 34678999999999999999 76 8999999998 78889999999999999999999999999
Q ss_pred cCCeEEEEeCCCC-eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 CYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 ~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|.+|++||+-.. ..+....+...+.+++|+|||+-||+++.||.|.+||
T Consensus 498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 9999999999655 3334456788899999999999999999999999997
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=289.68 Aligned_cols=243 Identities=25% Similarity=0.423 Sum_probs=221.7
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------------eeeeEeccCc
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------YSLRTFTGHS 348 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~------------------------------~~~~~~~~h~ 348 (545)
.++......++|..|++|+++||.|-.|..|++|.+...+ ...+++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 3444445679999999999999999999999999987311 1234678999
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
++|+...|+|+.+. |++|+.|+++|+|.+.+..++-.++.+ .+|..+.|+|.|-++++++.|++-++|......+.+.
T Consensus 452 GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred Cceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 99999999999654 559999999999999999998888744 5689999999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.+|-+.|.|+.|+|+..|+++|+ |.+|++||+.++ ..+..+.+|..+|.+++|+|+|++|++|+.|+.|.+||+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 999999999999999999999999 999999999998 7899999999999999999999999999999999999999
Q ss_pred CCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.+ .+.+|.+.|.+|.|+.||..||+|+.|.+|++||
T Consensus 608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99888 8889999999999999999999999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=244.32 Aligned_cols=280 Identities=18% Similarity=0.350 Sum_probs=241.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+..|.++|.++.|+-||+|.++++.|++|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC--ceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.+++. ++.+.+|.+.|+.+.|+.+. .++++|+.|..+++||.+.. +++..+. ....|.++.+.. ..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccC
Confidence 99986 99999999999999999874 67779999999999999864 4454443 335677777764 578999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce--EEEEEcCCC
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTF 488 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v--~~~~~sp~~ 488 (545)
|+++.||++.|.....+-+ .+|+|++|+++++.+.+++ |+++++.|-.++ +.+..+++|.+.- ..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4899999999999999988 999999999888 6677777777654 456777788
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC-eeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+++|+.||.|++||+.+...+ .+..|... |.+++++|.-.-|+++... .+.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 88999999999999999998888 66666666 7899999988777777543 35555
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=276.53 Aligned_cols=282 Identities=22% Similarity=0.409 Sum_probs=256.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
+.+..|+.+|.|+.|+|...+++++-..|.|.|||.++...++.+.-..-+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCC-eeEEEEeCC-CCEEEEEECCCe
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQPR-LGRILAAAIENY 413 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~-v~~l~~sp~-~~~l~~~~~dg~ 413 (545)
... +..|..|.+.|.+++.||...+++ +++.|-.|++||.+. ..|..+|..+.. |.+++|+|. .+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 876 999999999999999999977666 999999999999985 467778876554 999999994 567889999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g--~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|+||.+....+..++++|...|+|+++-+.| .||++|+ |.+|+|||..+. .|+.++.+|...|..+.|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998755 6999999 779999999876 999999999999999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 491 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+++|+.||+++||+..+-+.. ++.-.-..|++++-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 55566788999999999999999998887754
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=278.07 Aligned_cols=281 Identities=20% Similarity=0.390 Sum_probs=256.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888875 57999999999999999964 3899999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----Cce--------eeEEeccCCeeEEEEeCCCC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-----~~~--------~~~~~~~~~v~~l~~sp~~~ 403 (545)
... +.+...|.+.|+.++..|++..++ +|+.|.+|++||..- +.. .+++.....+.|+.++|++.
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 765 778889999999999999987776 999999999999741 111 13556678899999999999
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
+++++--|++|+||-+.+.+....+.||.-+|.|+..+||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999776 8888999999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|++++.+|+|.++++++.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999888877 8899999999999999999999999999999994
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=264.22 Aligned_cols=268 Identities=22% Similarity=0.396 Sum_probs=233.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
-......|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 193 ~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 193 RSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 33456789999985 457999999999999999999999999999999999999 45699999999999999999987
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEE-eccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
. +.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +.+ .+...|+.+.|+. +++++++.|.+|
T Consensus 269 ~-l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 P-LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTI 342 (499)
T ss_pred h-hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceE
Confidence 4 99999999999999998 346779999999999999865422 222 2345678888875 589999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++|+..+++.+.++.+|...|.|+.+ .|+++++|+ |.+|++||+..+ .|+..+.+|..-|.++.|. .+.|++
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeee
Confidence 99999999999999999999999986 689999999 999999999988 8999999999999999995 455999
Q ss_pred EEcCCeEEEEeCCCCeE---------E-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKT---------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~---------~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.||+|+|||+..+.- + .+..|.+.|..+.|. ...+++++.|.+|.|||
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 99999999999976542 1 456799999999994 66899999999999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=241.00 Aligned_cols=281 Identities=19% Similarity=0.257 Sum_probs=239.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
.+.||..+++.+.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|+....+.++|+||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc----CCCcEEEEECCC-------CceeeEEe-ccCCeeEEEEeCCCCEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFK-CQSGATQMRFQPRLGRI 405 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s----~dg~I~lwd~~~-------~~~~~~~~-~~~~v~~l~~sp~~~~l 405 (545)
+. +..+. ...+|..+.|+++++.++++.. ..+.|.++|++. .++...+. ....++.+-|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 86 55555 5678999999999887776543 346899999983 44444443 45679999999999999
Q ss_pred EEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 406 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
++|..+|.|.+||++++ +.+.....|...|+.+.++++..++++++ |.+-++||+.+. .++.++. ...+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999997 45556677999999999999999999999 999999999886 6677766 467899999
Q ss_pred EcCCCCEEEEEEcCCeEEE--EeCCCCe------------EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 484 FHPTFPSLLVIGCYETLEL--WNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~i--wd~~~~~------------~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++|...+++.|+......| -+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999988888876553222 2223332 22 567899999999999999999999999999973
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=257.55 Aligned_cols=262 Identities=25% Similarity=0.455 Sum_probs=238.3
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~s 314 (545)
...|..+++||..+|.. ...++||++.|..++|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-
T Consensus 126 as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 126 ASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL 202 (406)
T ss_pred ecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence 34578899999998875 688999999999999999999999999999999999987 67778889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v 393 (545)
|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.+++|...+.. ...+
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 999999999999999999999876 599999999999999999986 6888999999999999999987776653 3457
Q ss_pred eEEEEeCC---------------CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 394 TQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 394 ~~l~~sp~---------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
.+++|.|. +..+.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++. |+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 77777653 13678888999999999999999999999999999999999999999999 889999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
||+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|.-
T Consensus 361 wdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999887 899999999999999999999999999999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=252.98 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=245.6
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+.+|..|++.|++|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.++.. ...+...-..+.=+.|||.+ .+|+.|+.||.|.+|.+.+....+.+. +..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98876 45554556678889999975 566699999999999999876666665 4557899999999999999999999
Q ss_pred EEEEECCCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe--------eCCC---ceE
Q 009059 414 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGN---KFH 480 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~--------~~~~---~v~ 480 (545)
|++|++.++.++..+.. ......++.++..+..++.|+ ++.+++-+..+++ .+.... .+.. .|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK---Vv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK---VVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce---EEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 334678889988999999988 8888888887773 333333 2233 344
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+.++..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45556666788999999999999999999988889999999999998 78999999999999997
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=247.09 Aligned_cols=280 Identities=21% Similarity=0.268 Sum_probs=249.6
Q ss_pred eecCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 258 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp---dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+-++.+|.+.|+...+..+...-++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3468999999999987 8999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeE-EeccCCeeEEEEeCCCCEEEEEECCC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV-FKCQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
-++.. +..|. |..-|.+++|+.|.++++ +|+.+.-+|+||++..+. ... -.+.+.|..+.|......|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98875 66665 888999999999987776 999999999999986542 223 34567799999999889999999999
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
+|++||.+++..+..+. ...+|+++.++++|++|.++..+.|.+||..+. ..+..+. ....|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999987 578999999999999999988889999999776 4455444 356789999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|+.|..++.||..+++.+ . ..+|.++|.|+.|+|+|...|+|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988 3 379999999999999999999999999999994
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=258.03 Aligned_cols=279 Identities=24% Similarity=0.387 Sum_probs=245.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--------cCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+....+.|..|||||.||++|+.||.|.|||..+|+....++ -+..+|.|+.|+.|..+||+|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445668899999999999999999999999999998776553 478899999999999999999999999999
Q ss_pred ECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEEC
Q 009059 333 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 333 d~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~ 410 (545)
.+.++.+ ++.|. .|+..|+|+.|+.|+..++ +++.|.++++.-++.|++++.++.+. -|+...|.++|..+++++.
T Consensus 291 ri~tG~C-lRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQC-LRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEecchH-HHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999886 66655 8999999999999988777 99999999999999999999998654 4899999999999999999
Q ss_pred CCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEee---CCCceEEEE
Q 009059 411 ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCV 483 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~---~~~~v~~~~ 483 (545)
||+|++|+.++.+++.+++. ...+|+++..-|.+ ..++++. .++|+|.++.. ..+..+.. .++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988875 45578888887765 5666666 88999999753 44555542 356788999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.|.++++.+.|+.++.|.+.+++.- ++.-|+..|..++-+|..++||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999998877 7788999999999999999999999999999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=240.74 Aligned_cols=282 Identities=17% Similarity=0.253 Sum_probs=249.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE--EeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd 333 (545)
+.+++|..+|.+++|+-+|..||+|+.|+++.+|+++..+... ...+|.+.|-.++|+| ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5577899999999999999999999999999999998876554 3478999999999988 466899999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
++.++. ...... .+.-.-+.|+|+|++++ .++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.
T Consensus 94 ~r~~k~-~~~i~~-~~eni~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKC-TARIET-KGENINITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcE-EEEeec-cCcceEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998886 443332 33445688999987665 788899999999999999988888888999999987777777777899
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|.|......+++..++.|.....||.|+|+|+|||+|+ |-.+.+||+... .|+..+..+.-+|+.+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999655 88999999999999999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC---------CcEEEc
Q 009059 493 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 544 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D---------g~I~iW 544 (545)
+++.|..|-|=++++|..+....+.++...++|+|...+||-+++| |.||||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999777899999999999999999988865 566665
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=267.89 Aligned_cols=258 Identities=23% Similarity=0.396 Sum_probs=222.2
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~ 318 (545)
....+|+. ..|..-.++.+|..+|.++.|+++|.++++|+.+|.|++|+..- ..+..+.. |...|.+++|+|+..
T Consensus 118 GEFtLWNg---~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 118 GEFTLWNG---TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ccEEEecC---ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCc
Confidence 34566753 44555567889999999999999999999999999999999654 44455554 459999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
.|++|+.||+|+|||....+. .+.+.+|.-.|.+++|+|.. .++++++.|..|++||.+++.|+.++.. ...|..+.
T Consensus 194 kF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred eeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 999999999999999987765 67789999999999999984 6788999999999999999999988764 45699999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
|++++++|++++.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|++|+ ||.|..|.+.... .....-..|
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AH 349 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAH 349 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCccc
Confidence 99999999999999999999999989999999999999999999954 5666666 9999999987432 222233468
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
...|++++|+|-|..|++|+.|.++++|.-
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeecc
Confidence 899999999999999999999999999965
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=270.03 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=254.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|+.+++|+...+ ....++.||...|+++.|...|..||+|+.|+.|.|||+-.-.-+..+.+|.+.|+..-|..+.
T Consensus 85 aDGsVqif~~~s~---~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~ 161 (888)
T KOG0306|consen 85 ADGSVQIFSLESE---EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD 161 (888)
T ss_pred cCceEEeeccCCC---ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC
Confidence 4678899988866 4567899999999999999999999999999999999998777788888888888888888777
Q ss_pred CEEEEEeCCCeEEEEECCCCCe----------------------------------------------------------
Q 009059 318 SRLATSSADRTVRVWDTENPDY---------------------------------------------------------- 339 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~---------------------------------------------------------- 339 (545)
++|++.+.|+.|++||+++..+
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 7888888888888888761000
Q ss_pred --------------------------------------------------------------------------------
Q 009059 340 -------------------------------------------------------------------------------- 339 (545)
Q Consensus 340 -------------------------------------------------------------------------------- 339 (545)
T Consensus 242 qsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ 321 (888)
T KOG0306|consen 242 QSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSA 321 (888)
T ss_pred ccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechh
Confidence
Q ss_pred -------------e------------------------------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 340 -------------S------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 340 -------------~------------------------------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
. -..+.+|...|.+++++.+. .++++|+ .+.|++|
T Consensus 322 kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiW 399 (888)
T KOG0306|consen 322 KIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIW 399 (888)
T ss_pred heeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecC-CCcEEEE
Confidence 0 01223577788888888763 4554554 7789999
Q ss_pred ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 377 d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
+..+.+|++++... .+.+..|-|.+.++++|...|.+.+||+.+...+.++..|.+.|.+++.+||++.+++++ |.+|
T Consensus 400 n~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV 478 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV 478 (888)
T ss_pred EccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence 99999999999875 788999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCCCCC--cc--eEE-----EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE
Q 009059 456 RVWSIGSGSK--GE--CIH-----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 456 ~vwd~~~~~~--~~--~i~-----~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 525 (545)
++||+.-... .. .+. ..-.-...|.++.+|||+++|+++--|.+++||-+++.+.. .+.+|.-+|.+|.+
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 9999753211 01 111 11123577999999999999999999999999999999887 89999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEc
Q 009059 526 STVNGMVASASHDKCVKIW 544 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iW 544 (545)
+||+++++|||.|..|+||
T Consensus 559 S~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cCCcCeEEeccCCCceEEe
Confidence 9999999999999999999
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=276.14 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=250.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
+...+..|..++|+|...+++++-..|.|.+||.+-+.++..|.+|.++|..++|+|.+.+|++|+.|-.|+||++.+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEEECCCeEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~~~dg~I~i~ 417 (545)
++.++.+|-+.|..+.|++.-..++ ++++|-+|+||+..+++|+..+..+.. |.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 4899999999999999999877666 999999999999999999999986654 9999999988999999999999999
Q ss_pred ECCCC-----------------------------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 418 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 418 d~~~~-----------------------------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
|+... ...+.+++|...|+-++|+|.-.+|++|+ |..|++|.....+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 97521 12346789999999999999999999999 77999999876433 4
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+.....+ ++....+..+.++.+|..+++|.|-+.| +.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence 56678899999999999999999999999999999999998888 6666678899999999999888776555 4444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=260.41 Aligned_cols=256 Identities=21% Similarity=0.276 Sum_probs=227.9
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~ 319 (545)
..+.+|+..+.. .++.+.-..-+|.++.|-+..+++++|+.|..|+||+..+++.+..++.|.+.|.|++.+|...+
T Consensus 35 G~V~IWnyetqt---mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~ 111 (794)
T KOG0276|consen 35 GDVQIWNYETQT---MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY 111 (794)
T ss_pred CeeEEEecccce---eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence 456677766653 35556666778999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEE
Q 009059 320 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 398 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~ 398 (545)
+++++.|-+|++||.+..-.+.++|.+|+..|++++|+|....-+++++-|++|++|.+....+..++.. ..+|+++.+
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY 191 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence 9999999999999999887788999999999999999999999999999999999999999988888874 467999999
Q ss_pred eCCC--CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 399 QPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 399 sp~~--~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.++++|+ ||+++||+..+- ....++.-.
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~g 268 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYG 268 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcC
Confidence 8854 5899999999999999999999999999999999999999999999999 999999998776 444555666
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
...+++++-.+....+++|..+|.|.
T Consensus 269 leRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 269 LERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CceEEEEeecCCCCeEEEeccCCcEE
Confidence 78899999888888777777776543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=274.92 Aligned_cols=265 Identities=27% Similarity=0.435 Sum_probs=231.7
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...+..+++|....+.. ...+.+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++++|...|++++|+
T Consensus 177 ~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~ 255 (456)
T KOG0266|consen 177 ASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS 255 (456)
T ss_pred ccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence 44677889998855543 456667999999999999999999999999999999999 5668999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccC-
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQS- 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~- 391 (545)
|+++++++|+.|++|+|||+++++ ++..+.+|...|++++|++++..++ +++.|+.|++||+.++. +...+....
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLV-SASYDGTIRVWDLETGSKLCLKLLSGAEN 333 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEE-EcCCCccEEEEECCCCceeeeecccCCCC
Confidence 999999999999999999999865 5999999999999999999976555 77889999999999999 455554322
Q ss_pred --CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC---EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 392 --GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ---VHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 392 --~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~---I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
.+..+.|+|++.++++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++|+ |+.|++||+.++
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-- 411 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-- 411 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--
Confidence 4799999999999999999999999999999999999998875 34445578899999999 999999999886
Q ss_pred cceEEEEeeC-CCceEEEEEcCCCCEEEEEE--cCCeEEEEeCC
Q 009059 466 GECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 506 (545)
Q Consensus 466 ~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 506 (545)
..+..+.+| ...+..+.+++..+++++++ .|+.+++|...
T Consensus 412 -~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 -GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred -chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 667778888 88899999999999999998 67789999754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=256.69 Aligned_cols=282 Identities=20% Similarity=0.341 Sum_probs=247.3
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35577899999999999998999999999999999987665 6788888899999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+..... ..++.+|++.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+... ...++++..|+.
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998765 8899999999999999876544 669999999999999999999988877778888876 356788888999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC----CCceEEEEEcCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 488 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~----~~~v~~~~~sp~~ 488 (545)
|++||.++..+......+. .|+++..++++..|.+++ |+++.++|+++. ...+.+... ....+.+.|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999888665 999999999999988888 999999999987 445544432 2347889999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eecc-CC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999987 3332 32 3699999999999999999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=233.07 Aligned_cols=264 Identities=22% Similarity=0.378 Sum_probs=218.8
Q ss_pred CcccceeeeeecCCceeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~ 312 (545)
.+.|+.+|+|+...+..+....++. +|+..|.+++|+|.|++||+|+.|.++.||.-. .++++.++++|...|.|++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va 112 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA 112 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence 4557889999988777777776664 799999999999999999999999999999765 4678899999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEE
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVF 387 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~ 387 (545)
|+++|.+||+++.|+.|-||.+.... .+...+.+|...|..+.|+|.. .||++++.|.+|++|+-. .-+++.++
T Consensus 113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl 191 (312)
T KOG0645|consen 113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTL 191 (312)
T ss_pred EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence 99999999999999999999998433 3567889999999999999984 577799999999999876 33566777
Q ss_pred ecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 388 KCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 388 ~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..+ ..+.+++|++.|.++++++.|++|+||-..+.-. .-|...++.+.|. ...|++++ |+.|++|.-.....
T Consensus 192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d 265 (312)
T KOG0645|consen 192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD 265 (312)
T ss_pred cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence 644 4799999999999999999999999998663311 1278899999998 45677776 99999998764311
Q ss_pred ---cc-eEEEEeeCCCceEEEEEcCC-CCEEEEEEcCCeEEEEeCC
Q 009059 466 ---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 466 ---~~-~i~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~I~iwd~~ 506 (545)
.. ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus 266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 12234568889999999995 6779999999999999864
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=245.64 Aligned_cols=278 Identities=21% Similarity=0.327 Sum_probs=236.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~~ 337 (545)
.|.+.|.++... +++|++|++||.+++||. .|+....+.+|.++|.+++|.-. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488899999887 779999999999999996 57899999999999999988543 336999999999999999876
Q ss_pred Ceee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-------------------------ceeeEEe-
Q 009059 338 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 388 (545)
Q Consensus 338 ~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-------------------------~~~~~~~- 388 (545)
...+ ....||...|-++...+++. .+++|+.|..|++|+..+. .++-.+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5422 33459999999999999975 5569999999999993211 0111222
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
|...|.++.|++ ...+++++.|.+|+.||++++..+..+.+ ...++|+.++|..++|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 345688999998 58899999999999999999998888874 67899999999999999999 9999999999987777
Q ss_pred eEEEEeeCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCe-EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~-~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
....+.+|.+.|.++.|+|...+ |++++.|+++++||++..+ .+ .+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999998765 6778889999999999877 54 888999999999996 56799999999999997
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=255.65 Aligned_cols=261 Identities=20% Similarity=0.388 Sum_probs=224.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.+.+|.++++||..+-+ ..+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+|...|..+.|+
T Consensus 212 SGlrDnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ 286 (499)
T KOG0281|consen 212 SGLRDNTIKIWDKNSLE---CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS 286 (499)
T ss_pred cccccCceEEeccccHH---HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence 56789999999987654 567889999999999996 5699999999999999999999999999999999999997
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-C
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~ 391 (545)
. .++++++.|.+|.|||+..+.. +.+.+.||...|+.+.|+. .++++++.|.+|++|++.++++++++..+ .
T Consensus 287 n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 4 5999999999999999987653 2357789999999999983 47779999999999999999999998744 4
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc----
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---- 466 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~---- 466 (545)
+|.|+.+ .+..+++|++|.+|++||++.|.++..+++|+.-|.|+.| +.+.+++|. ||+|+|||+..+...
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~ 437 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA 437 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccc
Confidence 5666655 4477888889999999999999999999999999999999 456788888 999999999876432
Q ss_pred --ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 467 --ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 467 --~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.|+..+..|.+.|..+.|.. ..|++++.|.+|.|||..++..-
T Consensus 438 ~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 438 STLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence 36666777889999999954 45899999999999999776544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-29 Score=232.46 Aligned_cols=283 Identities=22% Similarity=0.297 Sum_probs=236.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC--CCeEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 331 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~--dg~I~v 331 (545)
+..+.++.-.+.|+++.|+++|.+|++++.|..++|||..+++.+.++..+...|..++|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334555666788999999999999999999999999999999999999988889999999887777777766 889999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.++.+.++ ++.|.||...|..|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|.|.|-.++++...
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence 99999887 999999999999999999875 455999999999999998888877764 344568999997777777777
Q ss_pred CeEEEEECCCC--EEEEEec---CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc---eEEE
Q 009059 412 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC 482 (545)
Q Consensus 412 g~I~i~d~~~~--~~~~~~~---~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~ 482 (545)
+.|++||++.- .+..++. +.....+.+.|+|+|++|+.+. .+.+++.|.-+| ....++..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeE
Confidence 79999999863 2333332 3467889999999999999888 779999999888 455555554433 3678
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.|+++++++|+.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++|+++. .+-+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 99999999999999999999999999888 6666 7899999999998877777754 56666
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-31 Score=242.84 Aligned_cols=291 Identities=19% Similarity=0.300 Sum_probs=246.9
Q ss_pred CCccccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 009059 207 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 286 (545)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~ 286 (545)
+..+.++..++.+-.+|+--+.|. ..+.|+++++||+.+|.. ..++.||...|..+++|+--.||++++.|+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~----tgs~DrtikIwDlatg~L---kltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFA----TGSADRTIKIWDLATGQL---KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEE----ecCCCceeEEEEcccCeE---EEeecchhheeeeeeecccCceEEEecCCCe
Confidence 344566777777777777644343 234689999999999963 5678899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++.. .+..+.+|..+|..+.+.|....++ +
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t 294 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-T 294 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-E
Confidence 9999999999999999999999999999999999999999999999999866 4899999999999999998876666 9
Q ss_pred EcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
|+.|++|++||++.++...++.++ ..+.+++.+|... +++.+....|+-|++..+..+..+.+|..-|++++...||-
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCce
Confidence 999999999999999988877654 4589999999854 44555556799999999999999999999999999988876
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+++.+..|.+.+||.+++.......++. .....|++.+|...+..|+++..|.+|++|.-.+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 6555558899999999986655443332 2346789999999999999999999999997544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-31 Score=233.25 Aligned_cols=277 Identities=21% Similarity=0.346 Sum_probs=228.0
Q ss_pred EEEEEcC-CCCEEEEEe-------CCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 009059 267 ESCHFSP-DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 267 ~~l~~sp-dg~~latg~-------~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~ 335 (545)
.++.||| -..+||++. ..|++.|-++...+-+..+ ..-.+.+.+++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4688999 223444332 3688999998644444333 235678999999995 5688999999999999998
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCC-CCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR-LGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~-~~~l~~~~~dg~ 413 (545)
....++..++.|..+|.++.|++..+..+++++.|++|++|+......+.++..+. .|....|+|. .+.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 88888999999999999999999888888899999999999999999999887554 4889999995 566777888999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS 490 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~ 490 (545)
+++||++..-....+..|...|.|+.|+... ..|++|+ |+.|++||++.-. ..+.++.+|.-.|+.+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 9999998754445588899999999999854 5677777 9999999999765 5688889999999999999976 45
Q ss_pred EEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd-~~~las~s~Dg~I~iWd 545 (545)
|++++.|-+++|||.....-. +...|...|..+.|++- ..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 777788889999999855443 56678999999999874 56999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-29 Score=245.24 Aligned_cols=258 Identities=31% Similarity=0.537 Sum_probs=229.9
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+++|+...+. ....+..|...|.++.|++++++|++++.|+.|++|++.+++.+..+..|...|.++.|++++.
T Consensus 30 ~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 30 DGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred CcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 5678888887664 3556778999999999999999999999999999999999888888999999999999999988
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~ 397 (545)
++++++.|+.|++||+.+.+. ...+..|...|.+++|+|++ .++++++.++.|++||+++++.+..+..+. .+.++.
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184 (289)
T ss_pred EEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEE
Confidence 999988899999999986654 67777899999999999984 566677779999999999888887776544 799999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
|+|++..+++++.++.|++||++.++.+..+..|...+.+++|++++.++++++ |+.|++||+.++ ..+..+..+.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~ 261 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHT 261 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccC
Confidence 999988999999999999999999998888888999999999999999999999 999999999876 5666777888
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+.++.|++++.+|++++.|+.|++|+
T Consensus 262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999999999999999999999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=232.81 Aligned_cols=286 Identities=20% Similarity=0.306 Sum_probs=236.3
Q ss_pred CccccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 009059 208 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 287 (545)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I 287 (545)
-.+.++...+.+.-|.++-.+|. ..+.|..+-+|++... .+.+-.+++|++.|..+.|.+|+..|++++.|++|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~a----SgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFA----SGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEe----ecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 33444555555555555444444 3445777778875432 23456678999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 288 VLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 288 ~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
+.||.++|+.++.+++|...|+.+.-+.-| .++.+++.||+++|||++.... ++++. ....++++.|...+...+ +
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-s 191 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-S 191 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-e
Confidence 999999999999999999999999854434 4677889999999999997653 66654 456899999999887766 9
Q ss_pred EcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCC----CEEEEEecCCC----CCEEE
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHK----NQVHS 437 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~----~~I~~ 437 (545)
|+-|+.|++||++......++..+ ..|+.+..+++|.++++-+.|.++++||++- ..++..+.+|. .....
T Consensus 192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 999999999999999999988754 5699999999999999999999999999984 35577777653 24567
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++|+|++.++.+|+ |..+++||.... .++..+.+|.+.|.++.|+|...+|++++.|.+|++=++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 89999999999999 999999998776 789999999999999999999999999999999987543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=237.21 Aligned_cols=286 Identities=25% Similarity=0.411 Sum_probs=238.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------------CeEEEEeccCCccEEEEEEcCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------------------~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+-..+..|+.++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3466788999999999999999999999999999999861 1356788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----cc
Q 009059 317 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQ 390 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~ 390 (545)
..+|++++.|++|++||+..... ..+.+. ...+|.++.|+|.|+.++ .|.....+++||+++.+|..... +.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999975432 122232 456899999999987666 78888899999999988765443 44
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-CC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
+.|+++.+++.++.+++++.||.|++||--+++++.++.. |. ..|.+..|..+|+||++.+ |..+++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5699999999999999999999999999999999888754 54 4789999999999999988 999999999998 7
Q ss_pred eEEEEeeCCCc-----eEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 468 CIHELSCTGNK-----FHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 468 ~i~~~~~~~~~-----v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
++.++.+.+.. -+...|.....+++.-... +.+.-||.++...+ --.+|.+.+..+.-+|.+.-+++|+.|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 77777755211 2344566666666665543 48999999988777 3348999999999999999999999999
Q ss_pred cEEEcC
Q 009059 540 CVKIWK 545 (545)
Q Consensus 540 ~I~iWd 545 (545)
.+++|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=264.14 Aligned_cols=247 Identities=21% Similarity=0.321 Sum_probs=206.7
Q ss_pred EEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------------------------------------
Q 009059 254 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 294 (545)
Q Consensus 254 ~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-------------------------------------- 294 (545)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999997543
Q ss_pred ----------------------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE
Q 009059 295 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352 (545)
Q Consensus 295 ----------------------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~ 352 (545)
-+++..+.+|.+.|.+|.|+.+ .+|++++.|.+||+|++.... ++..|. |.+.|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 0112235689999999999965 589999999999999999655 588887 999999
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 430 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-- 430 (545)
|++|+|..+.+|++|+-||.|+||+|...+.+.-.....-|++++|.|+|+..++|+.+|.+++|+....+....+.-
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999888999999999999999999999988888888899999999999999999999999999998776554321
Q ss_pred C------CCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC--CceEEEEEcCCCCEEEEEEcCCeE
Q 009059 431 H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 431 h------~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
| ...|+.+.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.+|++|++++.|..|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 2279999998754 3777777999999999766 4455555433 334567899999999999999999
Q ss_pred EEEeCC
Q 009059 501 ELWNMT 506 (545)
Q Consensus 501 ~iwd~~ 506 (545)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=256.17 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=203.7
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe-------eeeEeccCcccEE
Q 009059 281 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 352 (545)
Q Consensus 281 g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~-------~~~~~~~h~~~V~ 352 (545)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998888888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 432 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 432 (545)
+++|+|++..++++++.|+.|++||+++++.+..+.+...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777789999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 433 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 433 ~~I~~l-----~~sp~g~~l~s~s-dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+...+......+++.++++|..|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 3458888888876 54 7999999864322222233333344444555667888999999999999
Q ss_pred EeCCCCeEEEe--ccCCCCeeEEEEeCCC
Q 009059 503 WNMTENKTLTL--SAHDKLVSSLAASTVN 529 (545)
Q Consensus 503 wd~~~~~~~~~--~~h~~~V~~l~~spd~ 529 (545)
|++..+....+ ..+..++.+++|.|..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 2466788899999965
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=247.71 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=231.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE----EEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~----~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
-..+++|+..|.++++.|.|-.|++|+.|..|++||+..... .+.+ ......|.++.|++.+..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 356889999999999999999999999999999999864322 1222 22345699999999999999999999999
Q ss_pred EEECCCCCee-----------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEecc------CC
Q 009059 331 VWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ------SG 392 (545)
Q Consensus 331 vwd~~~~~~~-----------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~------~~ 392 (545)
|+|-...... +..-++|...++|.+|+|.....|++|+.||++++||+.+.+ .+..++.. -.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997643220 123458999999999999988888899999999999998654 33444422 24
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEE---EEEecCCCC--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
++.++|++++..|++|+.||.|.+|+...... ...-..|.. .|+||.|+++|++|++-+ |+++++||++..+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-- 397 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-- 397 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc--
Confidence 78999999999999999999999999865422 233455777 999999999999999988 9999999999765
Q ss_pred ceEEEEee--CCCceEEEEEcCCCCEEEEEEc------CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 467 ECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 467 ~~i~~~~~--~~~~v~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
+++....+ ...+-+.|+|+|+.+.|++|.+ .+.+.+||..+...+ .+.-....|..+.|+|.-+.|..|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 44444333 3445688999999999998865 358999999988877 55556788999999999999999999
Q ss_pred CCcEEEc
Q 009059 538 DKCVKIW 544 (545)
Q Consensus 538 Dg~I~iW 544 (545)
||+++||
T Consensus 478 dG~~~vy 484 (641)
T KOG0772|consen 478 DGTAHVY 484 (641)
T ss_pred CCceEEE
Confidence 9999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=256.17 Aligned_cols=248 Identities=18% Similarity=0.299 Sum_probs=220.0
Q ss_pred CeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 295 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
.+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.....++++|.+|..+|.+++|+++|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 356678899999999999999 8999999999999999999886777999999999999999999998777 99999999
Q ss_pred EEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 374 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
++||+++|+++..+.....++++.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+.+++.+
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 7888999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----EeccCC--CCeeEEEE
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 525 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~~ 525 (545)
|+.++||+.+.+.....+.. .......+|..+|+++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 88999999987743333322 23445678999999999999999999999987554333 566775 55677899
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 009059 526 STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iWd 545 (545)
||||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=260.67 Aligned_cols=270 Identities=24% Similarity=0.429 Sum_probs=241.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 467788999998 45899999999999999999999988 999999999999987788999999999999999988774
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.++ +..+++|+.|+.|.+||
T Consensus 284 -~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 284 -THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred -EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 999999999999999874 466688999999999999999999999 77889999998 68999999999999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.++++++.+.+|...|.++.+... .++++|+ |+.|++||+++.. .|+..+..|..-+..+.+ .+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 8888888 9999999998764 788899999888865554 56679999999
Q ss_pred CeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 498 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 498 g~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|++||..+++++ .+.+ |...|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999998 5666 66889888876 56789999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=223.30 Aligned_cols=258 Identities=23% Similarity=0.310 Sum_probs=225.4
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
..+.|+++|+|+...|. .++++.+|...|..++.+.|...+++|+.|+.|.+||+++|+.++.+.+|.+.|+.++|+
T Consensus 34 tcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EcCCCceEEeecccccc---eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 45668999999998886 578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
.+...+++|+.|.++++||.++.. .+++.+......|.++... +..+++|+.||+++.||++.|.....+- ..+|
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pi 186 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPI 186 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc-CCcc
Confidence 999999999999999999998654 3677888888999999987 4567799999999999999988765543 3689
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEE--EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~--~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
++++|+++++..++++.|+.|++.|-++|+.+..+++|...-. ..+++.....+++|+ ||.|++||+... ..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~s 263 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQIS 263 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeee
Confidence 9999999999999999999999999999999999999987544 456777788999999 999999999877 6677
Q ss_pred EEeeCCCc-eEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 471 ELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 471 ~~~~~~~~-v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
.+..+... +..+.++|....|+++...+ +.+|
T Consensus 264 k~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 264 KLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred eeccCCceeEEeeecccCccceeEecCCc-eece
Confidence 77766666 89999999988777776554 4444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=238.61 Aligned_cols=277 Identities=25% Similarity=0.367 Sum_probs=244.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
...|+++...+....+++|+.|..+.++|....+.+..++||...|+.+.|+++...+++++.|..|+||....... ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence 35688888888878999999999999999999999999999999999999999999999999999999999987664 67
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc---CCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
....|..+|+.+..+|.|++++ +++.|++..+.|++++.++...... -.+++..|+|||..|.+|..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999998777 8899999999999999988877654 24899999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.++..+..|.+|.++|..|.|+.+|.||++++ |+.|++||++.... +.++.. ....+.++.|.+.|.+|++++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999999999999 77899999998743 333332 23479999999999999999887
Q ss_pred CeEEEEeCCCCe--EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 498 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 498 g~I~iwd~~~~~--~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
=.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 788888755443 33 566788899999999999999999999998886
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=244.04 Aligned_cols=279 Identities=17% Similarity=0.318 Sum_probs=234.9
Q ss_pred EEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 256 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..+++.|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 56679999999999999976 6899999999999999999999999999999999999976 67899999999999998
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEE-ECCC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAA-AIEN 412 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~-~~dg 412 (545)
+.+ +++++.+ ...+..|.-+.. ...+++|+. .|.|||.....++..+.... .+.++.|+|....++++ +.|+
T Consensus 137 ~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 137 DGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred cCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 863 4666664 446777776654 456778864 59999999888888887544 48999999976665554 4899
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
.|.+||+++..++..+. -.-.-+.|+|+|.+..+++++ |..++.||++... ..+....+|...|..+.|+|.|..+
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence 99999999998877654 234557899999777777777 8899999998654 6677888999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+.|.+|+||..+.+....+. .--..|.++.||.|.+|+++||+|+.|++|+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 99999999999999888765332 2235699999999999999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=231.40 Aligned_cols=251 Identities=20% Similarity=0.264 Sum_probs=227.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.-+.++.+|.+.|+.+.+..+....|+++.|-+.+|||.-+|..+..+. |..-|..++|+.|.++|++|+.+..+||||
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3578899999999999999999999999999999999999999998885 889999999999999999999999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
++..+.+...+.+|.+.|..+.|......+| +...|++||+||.+++..+..+....+++++.++++ +.+++.+..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCce
Confidence 9999888999999999999999988766666 778899999999999999999999999999999999 56777778899
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l 491 (545)
|.+||..+...++.++ -...|.+...+|+..++++|+ |..++.||+.++ ..+..+ ++|.++|.|+.|+|+|...
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCcee
Confidence 9999999988888776 467899999999998888888 889999999998 445454 7899999999999999999
Q ss_pred EEEEcCCeEEEEeCCCCeEE
Q 009059 492 LVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~ 511 (545)
++|+.||+|++|.+.-++..
T Consensus 283 AsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCCceEEEEEecCCCch
Confidence 99999999999998766543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=242.00 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=239.3
Q ss_pred CCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
.+.|.+++|+|...+ +|+.+ .-.+.||+..+......+.-....|.++.|..||++|++|...|.|+|||+.+ ...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 357999999995443 44443 35899999998888888877889999999999999999999999999999665 4458
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-EEEEEECCCeEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 419 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~ 419 (545)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.+.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999888643443 455699999999755 5778888999999999
Q ss_pred CCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 420 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 420 ~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+.. ..+.++. |..+|..+.+-|.|..+++++...|+|||+.++. ..+..+..|...|+|+.+..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999998764 34445555999999999999999999999999
Q ss_pred eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 499 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+++||+.+.+.+.-....++|.+|+.+|++..++.|-.||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999888866678899999999999999999999998754
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=226.75 Aligned_cols=274 Identities=18% Similarity=0.298 Sum_probs=226.3
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CeEE-EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 260 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 260 ~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~-~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..-.+.|.+|+||| ...+|+.++.|++||+|+++. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 555677899999999999976 3333 45567999999999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
+. +..+..|.++|.++.|-+... .+|++|+.|.+|++||++....+.++..++.+.++..-. ..++++..+..|.
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIA 179 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEE
Confidence 85 677888999999999987543 478899999999999999999999999988888877654 5688888999999
Q ss_pred EEECCCCEEEEE-e-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC---------CceEEEE
Q 009059 416 ILDVETQVCRLK-L-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCV 483 (545)
Q Consensus 416 i~d~~~~~~~~~-~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~---------~~v~~~~ 483 (545)
+|+++++..... . ..-+-.+.||+..++....+.|+ +|.+.|..+..+.. ..-.++++|. ..|++++
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceE
Confidence 999987643321 1 12334688999988888888898 99999999987643 3444566665 2478899
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE-eCC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA-SHD 538 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~-s~D 538 (545)
|+|....|+++|+||++.+||-.....+ ....|..+|++.+|+.+|.++|-+ ++|
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 9999999999999999999999877666 667899999999999999988754 444
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=249.56 Aligned_cols=267 Identities=22% Similarity=0.389 Sum_probs=231.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc-C
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-H 347 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~-h 347 (545)
+.|+. ...||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+ |
T Consensus 183 ldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred hhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 67773 45777775 45899999999887766666689999999999999999999999999999998765 777777 9
Q ss_pred cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Ee-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE
Q 009059 348 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 425 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~ 425 (545)
...|.+++|. ..++.+|+.|+.|..+|++..+.... +. |...|..+.|++++.++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 45777999999999999998765544 43 4566999999999999999999999999999888999
Q ss_pred EEecCCCCCEEEEEEcCC-CCEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc--CCe
Q 009059 426 LKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YET 499 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~-g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~ 499 (545)
..+..|...|..++|+|- ..+||+|+ |++|++||..++ ..+..+. ....|.++.|++..+.|+++-. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 999999999999999995 46788776 889999999987 4555444 4678999999999988887654 448
Q ss_pred EEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.||+..+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999998777 7889999999999999999999999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=250.83 Aligned_cols=264 Identities=15% Similarity=0.215 Sum_probs=209.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-------------EEeccCCccEEEEEEcC-CCCEEEEEeCCCeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 329 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-------------~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I 329 (545)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44556667777666677777777777775443322 13678999999999999 88899999999999
Q ss_pred EEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCC
Q 009059 330 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 330 ~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~ 402 (545)
++||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++.+..+. +...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24667889999999999999877788899999999999999998888776 45679999999999
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCC-EEEEEEcCCCCEEEEEe-----CCcEEEEEcCCCCCcceEEEEee-C
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 475 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~sp~g~~l~s~s-----dg~I~vwd~~~~~~~~~i~~~~~-~ 475 (545)
..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45778998877776643 67999999987542 3333322 2
Q ss_pred CCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeCCC
Q 009059 476 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 529 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd~ 529 (545)
...+....|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999888 499999999999887732 2455677888888743
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=251.39 Aligned_cols=259 Identities=23% Similarity=0.413 Sum_probs=221.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...+++||-.-+- .+..|..|.++|..++|+|...++++||.|.+|+||+..+.+++.++.+|-+.|..+.|++.-.
T Consensus 30 sG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP 106 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP 106 (1202)
T ss_pred Cceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc
Confidence 3567888866554 3556789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc----------------
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------------- 382 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---------------- 382 (545)
+|+++|.|.+|+||++.+.++ +..+.||...|+|..|+|.. .++++++-|-+||+||+..-+
T Consensus 107 WIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 107 WILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred eEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 999999999999999998775 99999999999999999984 577799999999999985311
Q ss_pred -----------ee--eEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCCCCE
Q 009059 383 -----------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 383 -----------~~--~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
++ ..+. |..+|+.++|+|.-..+++|+.|..|++|.....+ .+-+..+|...|.++-|+|...+
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 01 1111 34568999999998999999999999999987543 35567899999999999999999
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+++.+ |+.|+|||+... ..+.++.......+.++.+|..+ |++++.|+.+.+|.++
T Consensus 265 IlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lN-LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELN-LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcc-eeeeecCCceEEEEEc
Confidence 99999 999999999776 77888888889999999999998 4555555555566554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=255.84 Aligned_cols=246 Identities=19% Similarity=0.334 Sum_probs=203.1
Q ss_pred eEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------------------------------CC----
Q 009059 296 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD---- 338 (545)
Q Consensus 296 ~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~--------------------------------~~---- 338 (545)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344555 8999999999999999999999999999998764 00
Q ss_pred -----------------------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 339 -----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 339 -----------------------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
.++..|.||.+.|..|.|+.+ ++|++++.|.+|++|++...+|+..|.|..-|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 123456789999999999976 4666999999999999999999999999999999
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 396 MRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 396 l~~sp-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++|+| |.++|++|+-|+.|+||++...+.+.-... ..-|++++|.|+|++.++|+ +|.+++|+....+.....+ +.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~-I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH-IR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee-Ee
Confidence 99999 668899999999999999998887765553 48899999999999999999 9999999987653211111 11
Q ss_pred eC------CCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEE-EeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 474 CT------GNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 474 ~~------~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+ ...|+.+.|.|... .+++.+.|..|+|||.++..++ .+.++.. .-....|+.||++|+++++|..|+|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 11 33799999997654 5999999999999999888777 5555432 3345678899999999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
|+
T Consensus 573 W~ 574 (712)
T KOG0283|consen 573 WK 574 (712)
T ss_pred Ee
Confidence 96
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=267.61 Aligned_cols=266 Identities=14% Similarity=0.204 Sum_probs=213.8
Q ss_pred CcccceeeeeecCCc----eeeE-EEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEE
Q 009059 236 DPRDRVGRSAEVGKG----FTFT-EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~----~~~~-~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~ 309 (545)
.+.|..+++|+.... .... .+..+. +...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|+
T Consensus 501 gg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~ 579 (793)
T PLN00181 501 AGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579 (793)
T ss_pred EeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence 345778888886432 1111 122233 356899999987 578999999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE
Q 009059 310 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF 387 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~ 387 (545)
+++|+| ++.+|++|+.||+|++||+.++.. +..+..+ ..|.++.|++....++++|+.||.|++||+++.. .+..+
T Consensus 580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 580 SIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred EEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 999997 788999999999999999987664 6666644 6799999976656778899999999999998765 34444
Q ss_pred e-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 388 K-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 388 ~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
. +...|.++.|. ++..+++++.|+.|++||++. ...+..+.+|...+.+++|++++.+|++|+ |+.|++|+
T Consensus 658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 3 45679999997 568999999999999999974 356788999999999999999999999999 99999999
Q ss_pred cCCCCCcce--------E--EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 460 IGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 460 ~~~~~~~~~--------i--~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
......... + .....+...|.+++|++++..|++++.+|.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 765421100 0 011234567999999999999999999999999996
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=257.08 Aligned_cols=280 Identities=20% Similarity=0.295 Sum_probs=234.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCC------------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~--~dg~I~lwd~~~------------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456699999999999999999 999999998642 23445667899999999999999999999999
Q ss_pred CeEEEEECCC----CC-------------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 327 RTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 327 g~I~vwd~~~----~~-------------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
+.|.||+... .. ..+..+.+|...|..++|+|++ .++++++.|++|.+||..+.+++..+..
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 00 1356788999999999999985 6777999999999999999998888874
Q ss_pred -cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC------CCCEEEEEEcCCCCEEEEEe--CC---cEEE
Q 009059 390 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVS--DE---LVRV 457 (545)
Q Consensus 390 -~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~I~~l~~sp~g~~l~s~s--dg---~I~v 457 (545)
.+.|..+.|.|-|++|++-+.|++|+||.+.+....+.+.++ ...+..+.|+|||++|++.. .+ ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 456999999999999999999999999998877666666543 23678999999999999976 33 7888
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCC-------------C----CEEEEEEcCCeEEEEeCCCCeEEE--eccCCC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPT-------------F----PSLLVIGCYETLELWNMTENKTLT--LSAHDK 518 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~-------------~----~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~ 518 (545)
.+-.+- ..-..+-+|..++.++.|+|. . ..+++|+.|++|-||.....+++. ..-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 876443 566788899999999999872 1 157888999999999997777762 233467
Q ss_pred CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 519 LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 519 ~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|..++|+|||-.|..+|.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=228.10 Aligned_cols=261 Identities=21% Similarity=0.342 Sum_probs=223.3
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCeEE----EEeccCCccE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFTVK----STLEEHTQWI 308 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~---~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V 308 (545)
...|...|+|+..-. ....+.||.++|.+++|.-... .|++++.|.++++|..+.++.. ....+|...|
T Consensus 121 gsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 121 GSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred eecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 345788999986543 4678899999999888855333 5999999999999998876544 3345999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------CeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
-+|+..+++.++++|+.|.+|.||+.... +.++.++.+|..+|.++.|.+ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 99999999999999999999999993210 124567889999999999998 3567
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEc
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~s 441 (545)
++++.|.+|+.||+.++.+...+.......++.++|....|++|+.|..|++||.+++ .....+.+|...|.++.|+
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 7999999999999999999999999999999999999999999999999999999975 4567899999999999999
Q ss_pred CCCCE-EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 442 TSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 442 p~g~~-l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
|...+ |++++ |+++++||+++.. ..++.+..|...|.++.|... ..|++|+.|.+|+|+.-
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG 417 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence 97754 56667 9999999999873 478899999999999999854 46999999999999864
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=234.22 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=231.3
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRF 313 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~ 313 (545)
..+.|.+.-+|++.....++..+++.+|..+|.-+.||||.++|++|+.|..+.+||+.+|.....+. +|...+.+++|
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 45567888889887777789999999999999999999999999999999999999999999887774 45688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
.|||..+++|+.|++|..||++... +..+.+-. ..|.+++..+||+.+++++ .|..|++|+.++......+..+.+
T Consensus 321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~ 397 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQP 397 (519)
T ss_pred ccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCc
Confidence 9999999999999999999998543 34444332 4699999999999888555 699999999998888888888899
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
+++++++.++.++++.-.+..+++||++..+.+..+.||+. .|..-||.- +..++++|+ |+.|+||+..++ ..
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kl 474 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KL 474 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ce
Confidence 99999999999999999999999999999888899999875 344556654 458999999 999999999888 88
Q ss_pred EEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCC
Q 009059 469 IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 507 (545)
+.++.+|...|++++|.|..+ .+++++.||+|+||-...
T Consensus 475 l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 475 LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999775 578888899999997654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=220.56 Aligned_cols=267 Identities=19% Similarity=0.312 Sum_probs=223.4
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC--EEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~t~s~dg~ 328 (545)
..+..+..+.+|.++|+|++.+ +.|+|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 4566677889999999999996 88999999999999999999999999999999999999998765 8999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
|.+|+..... .+..+++|.+.|+.++++|.++ |..+.+.|+.+++||+-+|+...........+.+.|+|.|.+++++
T Consensus 109 i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 109 IIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred EEEEEcCCeE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 9999999774 5899999999999999999975 5558888999999999999988888887888889999998887776
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE--cC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HP 486 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~--sp 486 (545)
.. ..|-+|.+++......+. ....+.|+.|...+.+++.+.|+.|.+||..+. .+...+..|.+.|-.+.+ .|
T Consensus 187 ~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~ 261 (362)
T KOG0294|consen 187 GR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP 261 (362)
T ss_pred ec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC
Confidence 65 568899988876655554 336688888875554444444889999999875 788899999999999984 56
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC-----eEEEeccCCCCeeEEEEe
Q 009059 487 TFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~-----~~~~~~~h~~~V~~l~~s 526 (545)
++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred CceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 7889999999999999999876 333333345667776643
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=223.20 Aligned_cols=289 Identities=19% Similarity=0.323 Sum_probs=245.5
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.++.++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++-+|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56678889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EECC------C---------------------------------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 332 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 332 wd~~------~---------------------------------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
|... . -..++..+.+|.+.|.+..|...+..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 9621 0 0124567889999999999998877666 9999999
Q ss_pred EEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
-.+||+++++.+..+..+ ...+.++-+|....+++.+.|.+.++||.+.. ..+..|++|...|+++.|..+.+ +++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 999999999999988754 45788888998888888899999999999854 55778999999999999987655 5566
Q ss_pred e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe-----ccCCCCeeEEE
Q 009059 451 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL-----SAHDKLVSSLA 524 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~-----~~h~~~V~~l~ 524 (545)
+ |.+|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||++..++..+ .+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 7899999998764 3455554 467889999999998787777778999999998877633 47999999999
Q ss_pred EeCCCC--EEEEEeCCCcEEEcC
Q 009059 525 ASTVNG--MVASASHDKCVKIWK 545 (545)
Q Consensus 525 ~spd~~--~las~s~Dg~I~iWd 545 (545)
|..+.. -|.+++.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 986543 578999999988884
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=218.39 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=216.4
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -..+.+|.+.|-.++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999866431 1356789999999999999999999999999999999
Q ss_pred CCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEE
Q 009059 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 456 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~ 456 (545)
++.++++..+....+-..+.|+|++++++++..|..|.++|.++.+.+...+ ....++.++|+.++.+++... -|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988777665 566788899987777666655 79999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~ 535 (545)
|.....- +.+..++.|.....|+.|+|+|+++++|+.|-.+-+||+.+.-+. .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998755 788999999999999999999999999999999999999998877 777899999999999999999999
Q ss_pred eCCCcEEE
Q 009059 536 SHDKCVKI 543 (545)
Q Consensus 536 s~Dg~I~i 543 (545)
++|-.|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=246.23 Aligned_cols=274 Identities=23% Similarity=0.408 Sum_probs=234.5
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEcCCCe------EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-ee
Q 009059 269 CHFSP-DGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YS 340 (545)
Q Consensus 269 l~~sp-dg~~latg~~dg~I~lwd~~~~~------~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~ 340 (545)
+..+. .+++|++||.||.|++|++.... ....++.|.++|.++....+++.|++++.|-+|++|+..... .+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 44443 67789999999999999876422 356788999999999999999999999999999999998764 56
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEe----------ccCCeeEEEEeCCCCEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~----------~~~~v~~l~~sp~~~~l~~~ 408 (545)
..++..|.+.|.|+++-.....++++|+.|+.|.+||++++. .+..+. ....+.+++.++.+..++.|
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 888999999999999944446889999999999999999873 232221 23458899999998888899
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+.++.|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+... .|+.++..|...|+++..+|+
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCC
Confidence 9999999999999999999999999999999999999999988 999999999766 899999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCC-eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
-.++++|+.|+.|+.=|+.+. +...+...+.+|..+..+.+.+-+-+++.|+.|+-|.
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999999999884 3445556677788888776555557778899999884
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=247.12 Aligned_cols=259 Identities=22% Similarity=0.423 Sum_probs=228.2
Q ss_pred CcccceeeeeecCCceeeEEEEe-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~-l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...+.++++|+...++. +.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++++..++.+|...|.++...
T Consensus 224 ~s~~~tl~~~~~~~~~~---i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYL---ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEeecccceE---EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc
Confidence 44567779999888763 444 99999999999999878899999999999999999999999999999999999885
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGA 393 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v 393 (545)
+ .++++|+.|.+|++|+++++.. +..+.+|.++|.++..+ ..++++|+.|+.|++||+.+++++..+..+ ..|
T Consensus 301 ~--~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 301 P--FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred C--ceEeeccCCceEEEEeccCcce-EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 4 4888899999999999998775 88888899999999998 356779999999999999999999998754 458
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+..+.+ .+++|++++ |+.|++||..++ .++..
T Consensus 375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~ 448 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRT 448 (537)
T ss_pred EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeee
Confidence 88888776 88999999999999999999 999999999998876664 678899888 999999999887 78888
Q ss_pred Eee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+.. +...|..+++. ...+++++.++.+++||+++++..
T Consensus 449 ~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 887 56788888876 566999999999999999999887
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=216.16 Aligned_cols=253 Identities=19% Similarity=0.288 Sum_probs=208.1
Q ss_pred CceeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCccEEEEEEcC-CCCEEEEEeC
Q 009059 249 KGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSA 325 (545)
Q Consensus 249 ~~~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~ 325 (545)
.+..+.+.+.+.- .+.+..++|+++ ...+++++.||.++|||+. ...++..+++|...|.++.|++ +...+++++.
T Consensus 47 ~~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 47 DPKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred CCCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 3444445554443 356889999995 4578888999999999964 3467888999999999999998 5667888999
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeC-CCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQP-RLG 403 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp-~~~ 403 (545)
|++|++|+...+.. +.++.+|...|+...|+|....++++++.|+++++||++.. +.+....+...+.++.|+. +..
T Consensus 126 D~TiKLW~~~r~~S-v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNS-VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred CCceEeecCCCCcc-eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence 99999999987765 89999999999999999999999999999999999999864 4444333445899999987 445
Q ss_pred EEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 404 RILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
.+++++.|+.|++||++.- .++..+.+|.-.|..+.|+|.. .+|++++ |-+++|||..... .++.+...|..-+.
T Consensus 205 vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 205 VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVC 282 (311)
T ss_pred EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEe
Confidence 6777888999999999974 5688899999999999999975 6788888 8899999997543 45566667888888
Q ss_pred EEEEcCC-CCEEEEEEcCCeEEEEeC
Q 009059 481 SCVFHPT-FPSLLVIGCYETLELWNM 505 (545)
Q Consensus 481 ~~~~sp~-~~~l~~~~~dg~I~iwd~ 505 (545)
.+.|++- ..+++.++.|+.++||+-
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 8888874 567999999999999984
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=233.25 Aligned_cols=260 Identities=22% Similarity=0.348 Sum_probs=224.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|+.+++|++.-+. ...+.+|.|..+.|+.+.|.++++.+++++.|+.+++|++...+...++.+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 34567778888776544 66788899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
.....+++|+.|.+|++||+....+ .+++. ....+..|... ...+++|-.|+.|++||++...+.......+.|+
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred ccccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence 8777799999999999999997554 55444 23456667665 3467799999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC----CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
++..++++..+++++.|..+.++|+++......+... ....+.+.|||++.|+++|+ ||.|+||++.++ ++.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence 9999999999999999999999999999888776542 23588999999999999999 999999999988 444
Q ss_pred EEEeeCC--CceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 470 HELSCTG--NKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 470 ~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
..+.... ..|+++.|+|.|..|++++.++.+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 4444333 359999999999999999999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=197.37 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=235.7
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------C---------eEEEEeccCCccEEEEEEcC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------~---------~~~~~l~~h~~~V~~l~~sp 315 (545)
..|..+.++.. +..|.+++|+|.|.+.|+|+..++++|--... + ...+.-+.|.+.|+|.+|+|
T Consensus 21 ~~f~~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 44556666554 45699999999999999999999998874321 1 11123357899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEEEEEEeCC---CCcEEEEEc-CCCcEEEEECCCCceeeEE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~~p~---~~~ll~s~s-~dg~I~lwd~~~~~~~~~~ 387 (545)
+|.+|++|+.|++|++.-++..... -..+..|.+.|..++|..+ +..++++++ .|..|++-|...+.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 9999999999999999877644321 2367789999999999653 445666654 5778888899899888888
Q ss_pred eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--C-----CCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-----~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
..+.+-.-.-++-++-.+++++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7655533334555667788888999999999999888877643 2 35799999999999999999 88999999
Q ss_pred cCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe-----EEEeccCCCCeeEEEEeCCCCEEEE
Q 009059 460 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spd~~~las 534 (545)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+.... .+....|...+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9988 8899999999999999999999999999999999999996542 2255679999999999999988999
Q ss_pred EeCCCcEEEc
Q 009059 535 ASHDKCVKIW 544 (545)
Q Consensus 535 ~s~Dg~I~iW 544 (545)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-27 Score=213.74 Aligned_cols=270 Identities=19% Similarity=0.265 Sum_probs=220.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
.-.+.|..+.|+|.+..|+++++||.+++|++....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 345679999999998899999999999999999876665554 899999999986 5679999999999999999876
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
...+-.|...|.||.+.+... .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||++
T Consensus 87 ~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred ceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcc
Confidence 456667999999999998754 5559999999999999987777777777777777665 4789999999999999999
Q ss_pred CCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCcceEEEEeeCC---------CceEEEEEcCC
Q 009059 421 TQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSCTG---------NKFHSCVFHPT 487 (545)
Q Consensus 421 ~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-~~~~~i~~~~~~~---------~~v~~~~~sp~ 487 (545)
+........ .-+-.+.|+++.|++.-+++++ ||.|.+=.+... .....-..+++|. .+|++++|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 876544322 2345789999999888777788 998777665543 1112334455553 46899999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
...|++|+.||.|.+||+...+.+ .+......|..++|+.+|..||+|+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999998887 66666788999999999999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=230.65 Aligned_cols=243 Identities=19% Similarity=0.251 Sum_probs=211.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~ 336 (545)
++.-..+.|.+++|..||++||+|+..|.|+|||+.+...++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 3444567799999999999999999999999999777667788999999999999999 466788999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... ...+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+.+..+|..+.+.|.|..+++ +..+.|+
T Consensus 143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ias-AgGn~vk 220 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIAS-AGGNSVK 220 (487)
T ss_pred cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEE-cCCCeEE
Confidence 764 66899999999999999998899999999999999999987 78889999999999999999665554 4567899
Q ss_pred EEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 416 ILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 416 i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+||+-+| +.+..+..|...|+|+++..++..|++++ |+.|++||+.+- +.++.+. -.++|.+++.+|++..+++
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEE
Confidence 9999965 55555556999999999999999999999 999999997655 5666665 4689999999999999999
Q ss_pred EEcCCeEEEEeCC
Q 009059 494 IGCYETLELWNMT 506 (545)
Q Consensus 494 ~~~dg~I~iwd~~ 506 (545)
|..+|.+.+-+..
T Consensus 297 GmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 297 GMSNGLVSIRRRE 309 (487)
T ss_pred ecccceeeeehhh
Confidence 9999977666443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-26 Score=232.22 Aligned_cols=304 Identities=16% Similarity=0.263 Sum_probs=245.0
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.......+|++.++. .+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++...+.|+.++|..|
T Consensus 179 s~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD 255 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD 255 (910)
T ss_pred ecCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence 345667899998886 56778899999999999998889999999999999999999999999866799999999999
Q ss_pred CCE-EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-------------
Q 009059 317 LSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------- 382 (545)
Q Consensus 317 ~~~-l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~------------- 382 (545)
|.. +++|+..|.+.+||++..+........|.+.|..+.|.|.. .++++.+.|..+++|=.+++.
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 875 56667779999999997665444555666667777766653 344466666655555222100
Q ss_pred --------------------------------------------------------------------------------
Q 009059 383 -------------------------------------------------------------------------------- 382 (545)
Q Consensus 383 -------------------------------------------------------------------------------- 382 (545)
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence
Q ss_pred -------------------e-eeEEecc------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe---cCCCC
Q 009059 383 -------------------C-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKN 433 (545)
Q Consensus 383 -------------------~-~~~~~~~------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~ 433 (545)
. ...+... ..+++++.++.|++.+.|...|.|-+|++.+|.....+ ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 0 0001111 23668899999999999999999999999999888888 47999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc--------------------------------------eEEEEee
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--------------------------------------CIHELSC 474 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~--------------------------------------~i~~~~~ 474 (545)
+|+.++...-++.+++++ +|.+++||+....... .+..+.+
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 999999998889899888 9999999987643100 1113557
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-CcEEEc
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 544 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D-g~I~iW 544 (545)
|.+.|+.++|||+|++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 8999999999999999999999999999999999999666778899999999999999999998 569998
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=223.84 Aligned_cols=263 Identities=20% Similarity=0.303 Sum_probs=225.9
Q ss_pred CcccceeeeeecCCceeeEE-----EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEE
Q 009059 236 DPRDRVGRSAEVGKGFTFTE-----FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~-----~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~ 309 (545)
.+.|.++.+|+.-+|..-+. -..+.-|..+|.|++||.|...||+|+.||.|+||.+++|.+++.+. .|+..|+
T Consensus 231 gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt 310 (508)
T KOG0275|consen 231 GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVT 310 (508)
T ss_pred ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCee
Confidence 44567788888777643322 23355688999999999999999999999999999999999999996 8999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|+.|+.|+..+++++.|.+++|.-+.+++. ++.+.+|...|+...|.++|..++ +++.||+|++|+.++.+|+.+|+.
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccC
Confidence 999999999999999999999999999885 999999999999999999987766 999999999999999999999875
Q ss_pred cC---CeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 390 QS---GATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 390 ~~---~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
.+ .|..+...|.+ ..++++...++|+|.++.. ..++.+.. ..+...+.+.+|.|.++.+.+ |+.++.|.+.
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEee
Confidence 43 47777777754 4677788899999999864 45555542 345677788999999999988 9999999998
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
++ ..-.++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 468 sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 468 SG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 88 56677888999999999999999999999999999994
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=235.35 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=190.4
Q ss_pred EeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCccEEEEEEcCCC-CEEEEEeCCC
Q 009059 257 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 327 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg 327 (545)
..+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567889999999999999975 6999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 405 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l 405 (545)
+|+|||+.++.. +..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. ...+.|.++++.+
T Consensus 149 tVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGKA-VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCeE-EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999998764 778889999999999999975 666999999999999999998887765543 4567888888888
Q ss_pred EEEE----CCCeEEEEECCCCE-EEEEecCC-CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee-CC
Q 009059 406 LAAA----IENYISILDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 476 (545)
Q Consensus 406 ~~~~----~dg~I~i~d~~~~~-~~~~~~~h-~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~-~~ 476 (545)
++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 37899999998754 33333323 34566678999999888775 8899999998873 3333322 34
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.++..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888887532 11112223455655443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=212.12 Aligned_cols=258 Identities=19% Similarity=0.320 Sum_probs=208.8
Q ss_pred EEEEeCCCcEEEEEcC------------CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 278 LATGGHDKKAVLWCTE------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 278 latg~~dg~I~lwd~~------------~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
|++|+++..|.=+++. +..++..+..|.+.|++++. ++.++|+|+.|-+|+|||+..... +..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-lg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-LGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-hccee
Confidence 5566666655555442 22345667899999999999 588999999999999999998665 77888
Q ss_pred cCcccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 346 GHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.|.+.|+++.|.+.-. .|+ +|+.||.|.+|+....+++..++.+ ..|+.++++|.++.-++.+.|+.++.|++-+|
T Consensus 81 ~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999988643 555 9999999999999999999988754 45999999999999999999999999999988
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.-+.+.- ....+.+.|+|.|.+++.+..+.|-+|.+.+... ..++. ....+.++.|. ++..|++|+.++.|.+
T Consensus 160 r~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v---~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV---FREIE-NPKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhH---hhhhh-ccccceeeeec-CCceEEEecCCceEEE
Confidence 76665542 2333459999999999999988899999877532 22222 22446666665 4556999999999999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~--spd~~~las~s~Dg~I~iWd 545 (545)
||.+...+. .+.+|...|-++.+ .|++.||+|++.||.|+|||
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 999987777 77899999999985 46678999999999999997
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=231.19 Aligned_cols=260 Identities=20% Similarity=0.283 Sum_probs=223.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSL 317 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~ 317 (545)
...+-+|+..++..... ...+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +
T Consensus 196 g~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 196 GQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred cceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 44678888888763222 223388999999999999999999999999999999999999998 99999999997 6
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l 396 (545)
..+.+|+.|+.|..+|++........+.+|...|..+.|++++ ..+++|+.|+.+.|||....+....+ .+...|..+
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 6899999999999999998776555688999999999999997 46669999999999999766666555 466779999
Q ss_pred EEeCC-CCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEE
Q 009059 397 RFQPR-LGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 397 ~~sp~-~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~ 470 (545)
+|+|- .+.|++|+ .|+.|++||..++..+..+. ....|..|.|++..+-|+++. ++.|.||++.+. ..+.
T Consensus 350 awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~ 425 (484)
T KOG0305|consen 350 AWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVA 425 (484)
T ss_pred eeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceee
Confidence 99995 45556554 39999999999999888776 578999999999986666544 779999999875 7788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.+.+|...|..++++|++..+++++.|.++++|++-..
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=220.40 Aligned_cols=273 Identities=20% Similarity=0.300 Sum_probs=223.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE----E-------------e-ccCCccEEEEEEcCCC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----T-------------L-EEHTQWITDVRFSPSL 317 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~----~-------------l-~~h~~~V~~l~~sp~~ 317 (545)
+..+..|.-+|+||+++||++++++++.+++|.=|++.+++... . - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 67788999999999999999999999999999999988776331 1 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-EeccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~~~~v~~l 396 (545)
+|||+|+.|..|.||+.++... +..+.+|.+.|.+++|-.....+ ++++.|+.|++|++.....+.+ +.++..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~l-ys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSEL-YSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCccce-eeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998775 88899999999999998765444 4889999999999998777665 4567789999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-e
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 474 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~ 474 (545)
.....+..+-+++.|+++++|++... ....+.+|.+.+-|++|-.+.. +++|+ +|.|.+|++.+.+ ++.+.. .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC---ceeEeecc
Confidence 88888666667779999999999543 3455778899999999986655 55566 9999999997753 333222 1
Q ss_pred C-----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe----EEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 475 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 475 ~-----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
| ..+|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 1 1379999999999999999999999999998882 22223467889999999999966655
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=209.54 Aligned_cols=285 Identities=18% Similarity=0.277 Sum_probs=212.4
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEe--ccCCccEEEEEEcCCCCEEE-EEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLA-TSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l--~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~ 330 (545)
+..|++|.+.|+|++|+.||++||+++.|+.|+||+++.+... +.+ .-.-+..+.++|.||-+-++ .+-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999999875332 111 11123467899999977554 444556899
Q ss_pred EEECCCC---Ceeee--------EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEE
Q 009059 331 VWDTENP---DYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF 398 (545)
Q Consensus 331 vwd~~~~---~~~~~--------~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~ 398 (545)
+|.+... ..... .-..|.-.+..+-.-.+ ..++++++.|..|.+|+++ |+.+..+... ..-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987532 21111 12235555666665544 4677799999999999999 8877776543 34567889
Q ss_pred eCCCCEEEEEECCCeEEEEECC---CC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC----CC
Q 009059 399 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 465 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~---~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~----~~ 465 (545)
+|+|.++++++---.|++|++- .| ..+..+++|...|..++|+++...+++.+ ||.++|||+.-. +.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34678899999999999999999999999 999999997532 11
Q ss_pred cceEEEE----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 466 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 466 ~~~i~~~----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
...+.+. ...+.....+..+|++..|+ .+....|++|..++++.. . ...|...|.+|+|+++|++++|++ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA-~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLA-VSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEE-eecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 2222222 12234445899999999554 455567999999998877 3 347999999999999999999997 45
Q ss_pred cEEEc
Q 009059 540 CVKIW 544 (545)
Q Consensus 540 ~I~iW 544 (545)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=229.42 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=231.8
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEeccCCccEEE-EEEcC-CCCEEEEEeCCCeE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 329 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~h~~~V~~-l~~sp-~~~~l~t~s~dg~I 329 (545)
+.-+.+.+|...|..|++.+.. .+++++.||++++|+-...+.+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456789999999999987654 8899999999999997654443 457788888887 88876 45569999999999
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEE
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~ 408 (545)
.+|...... ++.++.+|...|.++....++. +++|+.|.++++|.+. ++...+. |...|..+.+.|++ .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999998765 6999999999999999877754 5599999999999764 4444444 55678999999985 89999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
+.|..|++|.- ++.+.+|.+|.+.|..+++-+++.+|.++.||.|++|++ ++ +++.++.+|.+-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999976 677889999999999999999888887777999999999 44 7899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEeccCCC-CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+++++.|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 889999999999999987 5554444554 899999887775 7788899999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=232.12 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=245.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCCCeEEEE-------
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKST------- 300 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd-----------g~~latg~~dg~I~lwd~~~~~~~~~------- 300 (545)
|..+.+||+..-........+-.|...|+.+.--|- ..-++|++.|++|+||+++.+..-.+
T Consensus 345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils 424 (1080)
T KOG1408|consen 345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS 424 (1080)
T ss_pred CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence 556789999888877778888889999998876651 12488999999999999875211100
Q ss_pred ------------------------------eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc
Q 009059 301 ------------------------------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 350 (545)
Q Consensus 301 ------------------------------l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~ 350 (545)
..+....|.+++.+|++++||+|..-|+++||++.+-.+ ......|..+
T Consensus 425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesE 503 (1080)
T KOG1408|consen 425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESE 503 (1080)
T ss_pred hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccce
Confidence 012344699999999999999999999999999997665 6778899999
Q ss_pred EEEEEEeCC--CCcEEEEEcCCCcEEEEECCC-CceeeEEe-ccCCeeEEEEeCCC--CEEEEEECCCeEEEEECCCCEE
Q 009059 351 VMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFK-CQSGATQMRFQPRL--GRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 351 V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~-~~~~v~~l~~sp~~--~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
|.|+.|+.. +..||++++.|.-|.+||+.. ..++.++. +...|+++.|...| ..+++++.|..|++--.+....
T Consensus 504 ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 504 ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence 999999752 457899999999999999964 34455554 35679999998876 5688888888776544332111
Q ss_pred EEEecC-----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 425 RLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 425 ~~~~~~-----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
...+.. ....++.++..|..+++++++ |..|+||++.+++..+....-..|.+....+...|.|.||++.+.|.
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 112221 235789999999999999999 99999999999854444444445667888999999999999999999
Q ss_pred eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+||..+++++ ...+|...|+.+.|.+|-+.|++.+.||+|.||+
T Consensus 664 tl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 9999999999999 8889999999999999999999999999999995
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=217.73 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=207.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccEE
Confidence 5788999999999999999998888876544 6789999999876 5667889999999987764 44454443 35678
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~ 433 (545)
+|+|+++.+++++..++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++....+. ...
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 9999988787777778999999999988888777666678999999999988888765 57788999887766544 234
Q ss_pred CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeC-------CCceEEEEEcCCCCEEEEE-EcCCeEEEE
Q 009059 434 QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLELW 503 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~-------~~~v~~~~~sp~~~~l~~~-~~dg~I~iw 503 (545)
.+.+++|+|++++|++++ ++.|++||+.++ ..+..+..+ ......++|+|++++++++ +.++.|.+|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 567899999999886554 889999999887 344433321 1123568899999986665 456689999
Q ss_pred eCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE-eCCCcEEEcC
Q 009059 504 NMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 545 (545)
Q Consensus 504 d~~~~~~~~~~~h~~~V~~l~~spd~~~las~-s~Dg~I~iWd 545 (545)
|+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 99988877544556689999999999999876 4689999997
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=203.31 Aligned_cols=234 Identities=19% Similarity=0.295 Sum_probs=211.3
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
.+.+|..+++.|.|+.+|.+|++|+.|.++.||-..+++. +-++.+|.+.|+|++...+...++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999999887775 899999999999999998866555 99999999999999
Q ss_pred CCceeeEEeccCCeeEEEEeCCCCEEEEEEC-----CCeEEEEECC-------CCEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-----ENYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-----dg~I~i~d~~-------~~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
+|+++..++....|..+.|+.+++++++... .+.|.+||++ ..++...+..+...++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999999999999999999999988888775 3579999998 456678888889999999999999999
Q ss_pred EEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 448 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
++|. ||.|.+||++++. ..+.....|...|+.+.++++..++++++.|.+-++||+.+..++.......+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999874 456666778899999999999999999999999999999999999777788999999999
Q ss_pred CCCCEEEEEeC
Q 009059 527 TVNGMVASASH 537 (545)
Q Consensus 527 pd~~~las~s~ 537 (545)
|....++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887776653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=230.42 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=187.6
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCe--------EEEEeccCCc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQ 306 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~--------~~~~l~~h~~ 306 (545)
++.+..+++|+..+. ..+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 445677888887664 356788999999999999996 7899999999999999997532 3456789999
Q ss_pred cEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~~-l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
.|.+++|+|++.. |++++.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 9999999998875 57899999999999998764 44454 567899999999976 55577789999999999999888
Q ss_pred EEeccCC-ee-----EEEEeCCCCEEEEEECCC----eEEEEECCC-CEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-
Q 009059 386 VFKCQSG-AT-----QMRFQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 386 ~~~~~~~-v~-----~l~~sp~~~~l~~~~~dg----~I~i~d~~~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
.+..+.. +. ...|+++++++++++.++ .|+|||++. ..++..+. .+.+.+......++|.++++|.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8775543 22 223458888999988764 799999995 45555443 2333444444455688888887
Q ss_pred CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|+.|++|++..+. ...+..+. +..++..++|.|..
T Consensus 284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 9999999997652 23333333 56778889999965
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=240.18 Aligned_cols=252 Identities=22% Similarity=0.343 Sum_probs=214.0
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------------CeEEEEeccCCccEEEEEEcC
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------------------~~~~~~l~~h~~~V~~l~~sp 315 (545)
+.+.....|.+.|+|+.|+|||++||+|+.|+.|.||.... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34677889999999999999999999999999999998662 246678899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----- 390 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----- 390 (545)
++.+|++++.|++|.||+..+. ..+..+.+|.+.|..+.|.|-|. ++|+-+.|++|++|++.+..+.+.+..+
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999998 45999999999999999999985 5669999999999998876666665432
Q ss_pred --CCeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC-----CC------------EE
Q 009059 391 --SGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GE------------YL 447 (545)
Q Consensus 391 --~~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~-----g~------------~l 447 (545)
.....+.|+|+|.+|++... ...+.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 23678999999999988764 347999999999989999999999999999982 11 56
Q ss_pred EEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 448 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
|+|+ |++|.||..........++. .....|..+.|+|||..|++++.||+|.++.+++.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 7777 99999999866543333333 346789999999999999999999999999987643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-26 Score=207.63 Aligned_cols=276 Identities=20% Similarity=0.318 Sum_probs=220.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
-.||.|++.|.+||+|..||.|.|||+.+...-+.+.+|..+|++++|+++|+.|+|++.|..|.+||+..+.. ++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998884 66655
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec------cCCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
...+|+.+.|+|...+.++++-.+..-.+-++..+.. ..+.. .....+..|.+.|+++++|...|.+.+||.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 5789999999998777666665555555555554221 11111 112344568999999999999999999999
Q ss_pred CCCEEEEEecCCC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC------CcceEEEEe--eCCCceEEEEEcCCCC
Q 009059 420 ETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFP 489 (545)
Q Consensus 420 ~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~------~~~~i~~~~--~~~~~v~~~~~sp~~~ 489 (545)
++.+++..++-.. ..|..+.++..|++|+.-+ |..||.|++..-. ..+..+.+. .....-.+|+|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999998887665 7899999999999999988 9999999986321 111111111 1123456889999999
Q ss_pred EEEEEEcCC-eEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYE-TLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+++++... .++||....|.++ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 988887554 8999999999988 555555 567889999999888888 678999993
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=217.31 Aligned_cols=233 Identities=21% Similarity=0.309 Sum_probs=200.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
++|...|.+++.|+||+|||+|+.|..|.||+..+++.+..+.+|.+.|.+++|-.....|++++.|+.|++|+++...+
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999998776
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEEC
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
+.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+....+.+.+.|++|-.+ ..+++|+.+|.|.+|++
T Consensus 279 -vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 279 -VETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred -HHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 8899999999999998765 46777888999999999965444444444557889999877 88999999999999999
Q ss_pred CCCEEEEEecC-C-----------CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-CcceEEEEeeCCCceEEEEEc
Q 009059 420 ETQVCRLKLQG-H-----------KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 420 ~~~~~~~~~~~-h-----------~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~s 485 (545)
-..+++++... | ..+|++++..|...++++|+ +|.|++|-+..+- ....+..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99888776532 2 23899999999999999999 9999999998763 234555555 56789999999
Q ss_pred CCCCEEEEEEc
Q 009059 486 PTFPSLLVIGC 496 (545)
Q Consensus 486 p~~~~l~~~~~ 496 (545)
++|++|++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99997777744
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=215.10 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=235.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~ 338 (545)
..+.|+++.|+|...+|++++.|+.++||.++. ...+..+.--..+|.+.+|.|+|. .+++++....+..||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 457899999999999999999999999998753 445666666778999999999999 89999999999999998876
Q ss_pred ee-eeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~-~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.. +....++. ..+.....++++. +++..+..|.|.+....+++.+..++..+.+..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22333343 3566778889976 555888899999999999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC---CCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 417 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~---~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ....++..+......|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999988874322 336778889999999999 889999996542 3346666777777889999999999988
Q ss_pred EEEEcC--CeEEEEeCCCCeEE-Eec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCY--ETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~d--g~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.++.. ..+++-.+.+.... .+. ..-+.|+||+|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 887764 48888888776666 222 2346799999999999999999999999995
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=226.97 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=248.8
Q ss_pred CCcccceeeeeecCCceee---EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTF---TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~---~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~ 309 (545)
.+++|..+++|+...-... ..+..++.|.+.|..++...+++.|++++.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 4567888888887655432 236788999999999999999999999999999999999876 56788899999999
Q ss_pred EEEE-cCCCCEEEEEeCCCeEEEEECCCCCe---------eeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC
Q 009059 310 DVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 310 ~l~~-sp~~~~l~t~s~dg~I~vwd~~~~~~---------~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
|+++ .++...+|+|+.|+.|.+||++++.. ....+. ++...|++++.++.+ .++++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 77888999999999999999996522 122333 888999999999987 67779999999999999
Q ss_pred CCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEE
Q 009059 379 NNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 456 (545)
Q Consensus 379 ~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~ 456 (545)
++++.+..+. |...|..+..+.+|..++++++||+|++||+...+++.++..|...|+++..+|+-.++++|+ |+.|.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 9988777666 445699999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe-----------------------
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----------------------- 513 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~----------------------- 513 (545)
.-|+++......+ -....+|..+..+....-+.+++.|+.|+-|-..-...+..
T Consensus 281 ~Tdl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheEe---ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 9999986322222 22456677777776555568888888999886532211100
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 --~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
......|...++-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 00112233445556788999999999999997
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=185.48 Aligned_cols=248 Identities=18% Similarity=0.300 Sum_probs=206.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeE---EEEeccCCccEEEEEEcCC----CCEEEEEe-C
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-A 325 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~---~~~l~~h~~~V~~l~~sp~----~~~l~t~s-~ 325 (545)
.+.-+.|.+.|+|.+|+|+|++||+|+.|++|++.-.. +... ...+.-|.+.|.+++|-.+ +.+|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 45567899999999999999999999999999987543 3222 2456679999999999653 55677664 3
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--------CCeeEEE
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMR 397 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--------~~v~~l~ 397 (545)
|..|.+-|...+.. +..+.+|++.|.++- +-+ ..++++|+.|.+|++||++-..++.++... ..|..++
T Consensus 162 dc~iy~tdc~~g~~-~~a~sghtghilaly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 162 DCKIYITDCGRGQG-FHALSGHTGHILALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred cceEEEeecCCCCc-ceeecCCcccEEEEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence 67778888887764 889999999999874 222 468889999999999999988888876421 3488999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-CcceEEEEeeC
Q 009059 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCT 475 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~-~~~~i~~~~~~ 475 (545)
..|.|..|+++..|....+||++.++.+..+..|...|.|+.|+|...|+.+++ |..|++-|+...- ....+.....|
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999 9999999987532 12344556678
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999889999999999999764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=199.63 Aligned_cols=252 Identities=17% Similarity=0.237 Sum_probs=200.9
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
.++|..+|+|++.....+.. +....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+
T Consensus 46 ~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred cccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEec
Confidence 45578889998887433333 6677899999999999999999999999999999999984 456678999999999987
Q ss_pred CCC--EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE--ecc
Q 009059 316 SLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF--KCQ 390 (545)
Q Consensus 316 ~~~--~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~--~~~ 390 (545)
... .|+||+.|++|+.||++.... +.++. ..+.|+++..- ..+++.+..+..|.+|+++++.... .. ...
T Consensus 124 ~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk 198 (347)
T KOG0647|consen 124 GMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLK 198 (347)
T ss_pred CCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCccc
Confidence 655 899999999999999997654 55554 45678888775 3456677779999999997654332 12 123
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCC---------CEEEEEEcCCCCEEEEEe-CCcEEEE
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVW 458 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~---------~I~~l~~sp~g~~l~s~s-dg~I~vw 458 (545)
-.+.++++..+...++.|+-+|.+.|..+..+ +.-..|+.|.. .|++|+|+|....|++++ ||++.+|
T Consensus 199 ~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 199 WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred ceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEe
Confidence 45889999998888899999999999988876 44556666652 578899999877777766 9999999
Q ss_pred EcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 459 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
|-... ..+.+...+..+|+++.|+.+|.+++.+...
T Consensus 279 Dkdar---~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY 314 (347)
T KOG0647|consen 279 DKDAR---TKLKTSETHPQPITCCSFNRNGSIFAYALGY 314 (347)
T ss_pred cchhh---hhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence 98665 5677777899999999999999988776553
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=217.90 Aligned_cols=277 Identities=18% Similarity=0.265 Sum_probs=232.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.|..-|.++.+|...+.+.||+ .|.|+|||+..- .++..+. .....|.++.+.|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5888899999999999999998 489999998642 2333332 346779999999999999999999999999998
Q ss_pred CCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.....++ .+....-.+++++.+||.+ +.++|..||.|.|||+.+...++.|.. ..++.|+.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7664333 2333334678899999965 555777899999999999999998874 567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|+.||+++++.+.... ....|.++.++|.+.+|++|- .+.+.|....... .+.+..|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc----ceeecccccEEEEEEecccCceee
Confidence 9999999987666544 567899999999999999999 7788888876542 345566889999999999999999
Q ss_pred EEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 493 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.+.|+-+..|.+.-+..+.-......|.++.++.|.+||+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988877666677899999999999999999999877776
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-23 Score=205.51 Aligned_cols=278 Identities=14% Similarity=0.121 Sum_probs=208.5
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+..++.. +..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus 9 ~d~~v~~~d~~t~~~---~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (300)
T TIGR03866 9 KDNTISVIDTATLEV---TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN 83 (300)
T ss_pred CCCEEEEEECCCCce---EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence 456788899877754 344555543 6789999999976 5667889999999999888877765544 567899999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-CcEEEEECCCCceeeEEeccCCee
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-g~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
++.++++ ..|+.|++||+.+... +..+. +...+.+++|+|++..++ ++..+ ..+.+||..+++..........+.
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 9977655 5689999999987553 44444 234578899999987665 44444 457788999888776665556678
Q ss_pred EEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC-------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC
Q 009059 395 QMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 464 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~ 464 (545)
.+.|++++..+++++ .++.|++||+++++.+..+..+. .....++|+|++++++++. ++.|.+||+.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~- 239 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY- 239 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 899999998887665 58999999999988766554221 1235688999999865543 668999999876
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 527 (545)
+.+..+ .+...+.+++|+|++.+|+++. .++.|.+||+.+++++.........+.++++|
T Consensus 240 --~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 --EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred --cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 333333 2455789999999999998874 58899999999999873334556678888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=199.46 Aligned_cols=248 Identities=21% Similarity=0.288 Sum_probs=203.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd 333 (545)
-..|.+.|..+...--|+.|||++.|++|+|+..+.. +++.+|.+|.++|+.++|.. -|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4578999999998889999999999999999998753 57789999999999999965 699999999999999999
Q ss_pred CCCCCee-eeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCC-c-ee--eEEeccCCeeEEEEeCC---C--
Q 009059 334 TENPDYS-LRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNG-S-CA--GVFKCQSGATQMRFQPR---L-- 402 (545)
Q Consensus 334 ~~~~~~~-~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~-~-~~--~~~~~~~~v~~l~~sp~---~-- 402 (545)
-+++... ...+..|...|++++|-|.+- .+|++++.||.|.+.+.+.. . .. ....+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 345678999999999998753 45678889999999998764 1 11 12335567999999886 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEEEEEcCCCCCc
Q 009059 403 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 403 ---------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
.+|++++.|+.|+||+...+ .....+.+|.+.|..++|.|.- .+|++++ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 46999999999999999875 3345688999999999999964 5799999 999999998743222
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
-....+......+..+.|+..|+.|++++.|+.|.+|.-+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-24 Score=195.59 Aligned_cols=248 Identities=19% Similarity=0.275 Sum_probs=203.4
Q ss_pred CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCCc
Q 009059 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSE 372 (545)
Q Consensus 294 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg~ 372 (545)
..++.+.+......|+++.|+++|.+|++++.|.+++|||..+++. ++++..++-.|..++|......++.+.. .|.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3455566767788999999999999999999999999999999886 7888777778888888766555553332 4789
Q ss_pred EEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|+..++.+.+.++.|..+. .|..++.+|.+..+++++.|++|++||++..++.-.+... .-..++|+|.|-++|++.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALAN 159 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEec
Confidence 9999999999999998654 5999999999999999999999999999987776655433 334578999999999999
Q ss_pred -CCcEEEEEcCCCCCcceEEEEe---eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC---eeEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSL 523 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~---~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l 523 (545)
.+.|++||++.-.+ .+..++. ......+.+.|+|+|++|+.+...+.+++.|.-+|... .+..+... ....
T Consensus 160 ~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 44999999998644 2223333 34677899999999999999999999999999999877 45444322 2567
Q ss_pred EEeCCCCEEEEEeCCCcEEEcC
Q 009059 524 AASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 524 ~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+||++++++|+.||+|.+|+
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEE
Confidence 8999999999999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-23 Score=200.46 Aligned_cols=257 Identities=17% Similarity=0.266 Sum_probs=210.8
Q ss_pred eeeeeecCCceeeEEEEeecCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 319 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~ 319 (545)
-...|++..+..++...+++.+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 45678888888888888888765 4699999999985 678999999999999888887777799999999999999875
Q ss_pred EEEEeCCCeEEEEECCCCCe----------e-----------------------------eeEeccCcccEEEEEEeCCC
Q 009059 320 LATSSADRTVRVWDTENPDY----------S-----------------------------LRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~----------~-----------------------------~~~~~~h~~~V~~l~~~p~~ 360 (545)
|- |+.|..|..||-.-.+. . .....+|....+.++.+|+.
T Consensus 302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 55 99999999998321000 0 01234688899999999996
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEE
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~ 440 (545)
+. +++|+.|+.+++|+ ..+.+.......++.++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|
T Consensus 381 ~q-~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~y 455 (626)
T KOG2106|consen 381 NQ-LLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRY 455 (626)
T ss_pred hh-eeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEE
Confidence 55 45999999999999 66777777777899999999997 999999999999999999766655554 889999999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+|+|.+||.|+ |+.|+||.+..... .....-..+..+|+.+.|++|+++|.+-+.|-.|..|..
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999999999 99999999976543 222233345589999999999999998888888888843
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=199.36 Aligned_cols=243 Identities=23% Similarity=0.405 Sum_probs=200.4
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEE-eCCCCcEEEEEcCCCcEEEEEC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~-~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
..|.+.|.++...--|++||||+.|++|+|+..++.. ..+..+.+|.++|+.++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688999998888889999999999999999998765 467899999999999999 5666789999999999999999
Q ss_pred CCCceeeEEe---ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCC---C---
Q 009059 379 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 444 (545)
Q Consensus 379 ~~~~~~~~~~---~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~---g--- 444 (545)
.+++-.+... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8885544333 4567999999986 445788889999999988754 233445679999999999986 4
Q ss_pred --------CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC----CEEEEEEcCCeEEEEeCCCC---
Q 009059 445 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 508 (545)
Q Consensus 445 --------~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~--- 508 (545)
+.|++|+ |..|+||+...+ ....-.++..|...|+.++|.|.- .+|++++.||++.||-.+..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 5688888 999999999886 333444588999999999999965 46999999999999976522
Q ss_pred -eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 -~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+...+......++.+.||..|++|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 2223445678899999999999999999999999995
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=219.55 Aligned_cols=256 Identities=18% Similarity=0.302 Sum_probs=221.6
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~-l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
..++|+..++|+-. +..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|..|.+|......+..++++|...|.|+.
T Consensus 30 s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 56778899999764 3445566778899999888 88886 555699999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-C
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S 391 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~ 391 (545)
...++. +++|+.|.+++||.... +...+.+|...|+++++.|++ .+++|+.|.+|++|.- ++++++|..+ .
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 887777 99999999999998864 355689999999999999986 4559999999999975 7778888754 4
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
.|..+++.++ ..|++++.||.|+.|++ +++++..+.+|...|+++....++..+++++ |++++||+.. .|..
T Consensus 181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q 253 (745)
T KOG0301|consen 181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ 253 (745)
T ss_pred heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence 5889999987 67999999999999999 8889999999999999999777788888877 9999999875 6778
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.+......|+++.+-++|. |++|++||.|+||....
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 8877777899999999988 99999999999998764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=210.75 Aligned_cols=263 Identities=14% Similarity=0.220 Sum_probs=222.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|+.+++|+..... ++.++++|.+.|..|++.. ..+++++.|++|+.|.++. .++.++.+ ...+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence 45668889999988764 5678899999999999987 6788899999999999875 46666643 3457777777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.+||++++.++..+...-..+
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 778889998765 9999998654 5788877778899999999999999999999999999999999999888888899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++|+|..-.++++..|..++.||++.. .++..+.+|...|.++.|+|.|+-+++|+ |.+|+||.+..+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999997777888888999999999975 56778889999999999999999999999 999999999877443322221
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.-..|.++.|+.|.+++++|+.|+.|++|.....+
T Consensus 314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 23568999999999999999999999999876544
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=215.72 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=229.7
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC--EEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~--~l~t~s~dg~ 328 (545)
+...+-..++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++.++. ..+.|.||+|+|.+. .||++-.+ .
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~ 465 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-C 465 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-c
Confidence 4555667899999999999999999999999999999999999999998886 445899999999654 44444333 2
Q ss_pred EEEEEC---------------------------------CC---CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--
Q 009059 329 VRVWDT---------------------------------EN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-- 370 (545)
Q Consensus 329 I~vwd~---------------------------------~~---~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-- 370 (545)
+.|-+. .. ...-++....|...|..+.||..|.++..++..+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 333322 10 0111234445888999999999998877655433
Q ss_pred CcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 371 SEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
..|.|+++........| +..+.+.++.|+|...++++++ ...|+|||+.....++.+......|..++.+|.|..|+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 46889999877766666 3456799999999977666655 578999999988877777777889999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe------CCCCe-EE---EeccCCC
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN------MTENK-TL---TLSAHDK 518 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd------~~~~~-~~---~~~~h~~ 518 (545)
++ |+.+..||+.-.. ....++..|...+++++||+..+.+++|+.|+++.||- +-.+- ++ .+.+|..
T Consensus 625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 98 9999999997654 45667888999999999999999999999999888873 32222 22 5667865
Q ss_pred C----eeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 519 L----VSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 519 ~----V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
. |..+.|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 8899999999999999999999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-25 Score=225.49 Aligned_cols=275 Identities=19% Similarity=0.362 Sum_probs=216.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccC---CccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEH---TQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h---~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~ 336 (545)
...+|...++-..|+.++. ..+.||.+... ++...++.. ...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556777788888888875 47788876532 122222111 12355677865 567999999999999999986
Q ss_pred --CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCC-CCEEEEEECCC
Q 009059 337 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN 412 (545)
Q Consensus 337 --~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~-~~~l~~~~~dg 412 (545)
....+..|..|+..+.+++|++...++|++|+.||.|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 233366888999999999999999999999999999999999988877777654 35899999995 45677777789
Q ss_pred eEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 413 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 413 ~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.|.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||..+... ..+.++. ...++.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 56778889999999999999999999999 99999999987543 3334443 3678999999999876
Q ss_pred EEEEEc---CCeEEEEeCCCCeEE--EeccCCCCeeEEEEeC-CCCEEEEEeCCCcEE
Q 009059 491 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 542 (545)
Q Consensus 491 l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-d~~~las~s~Dg~I~ 542 (545)
.++.+. |-.|+|||++..-+- ++..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 555443 449999999876544 7788999999999964 445888999999864
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=205.25 Aligned_cols=264 Identities=17% Similarity=0.206 Sum_probs=223.1
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
++.|+..-++|...+. .+.+|+||...|+.+.|+|+...+++++.|..|+||.............|..+|+.+..+|
T Consensus 237 GG~d~~av~~d~~s~q---~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~ 313 (506)
T KOG0289|consen 237 GGEDKTAVLFDKPSNQ---ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP 313 (506)
T ss_pred cCCCCceEEEecchhh---hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc
Confidence 4456666677665554 4678999999999999999999999999999999999988888888899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEecc--CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCC
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 392 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~ 392 (545)
.|.||++++.||+..+.|++++.. +..... ..-.+++++||||| .+|.+|..||.|++||+.....+..|.. .++
T Consensus 314 tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 314 TGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred CCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 999999999999999999998875 333322 33459999999996 6788999999999999999888777764 456
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
|..+.|+.+|-++++++.|+.|++||++..+...++... ...+.+++|...|.+|+.++ |=.|++++-.+ +.+.++.
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~ 470 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIK 470 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeee
Confidence 999999999999999999999999999988877766543 34799999999999999986 44666666443 3457788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.+..|.+..+.+.|.....++++++.|..++++-+
T Consensus 471 ~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 471 ELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88888889999999999999999999999888754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=219.18 Aligned_cols=243 Identities=21% Similarity=0.351 Sum_probs=211.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp---~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
....|.|++.+|+|++||+|..-|+++||++...+....++.|...|.|+.|+. ..++||+++.|..|+|||+....
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 345699999999999999999999999999999999999999999999999986 36799999999999999999877
Q ss_pred eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe------ccCCeeEEEEeCCCCEEEEEECC
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~------~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
..+.++.+|...|+++.|--.| +.-+++|+.|..|.+--.........+. ....+..++..|..+++++++.|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD 617 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD 617 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence 7788999999999999998765 3345589989887653332211111111 22457899999999999999999
Q ss_pred CeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
..|+|||+++++..+.|++ |.+....+...|.|.||++.. |.++.++|+.++ +|+..+.+|...|+.+.|.+|
T Consensus 618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeeccc
Confidence 9999999999999999986 667888899999999999988 999999999988 999999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCC
Q 009059 488 FPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~ 507 (545)
.++|++++.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=208.85 Aligned_cols=253 Identities=19% Similarity=0.328 Sum_probs=204.5
Q ss_pred EEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC----------eEEEEeccCCccEEEEEEcCC-CCEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLATS 323 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~----------~~~~~l~~h~~~V~~l~~sp~-~~~l~t~ 323 (545)
+...--|.+.|+.+.+-|. ...+|+++..+.|.|||.... .+-.++.+|...-+.|+|++. .-+|+++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3444569999999999994 556778888999999998642 222478899998889999984 4589999
Q ss_pred eCCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC--CceeeEEe-ccCCee
Q 009059 324 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGAT 394 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~--~~~~~~~~-~~~~v~ 394 (545)
+.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +...+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 9999999999975432 34578899999999999999999999999999999999994 44444443 467799
Q ss_pred EEEEeCCCCE-EEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCC------
Q 009059 395 QMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS------ 464 (545)
Q Consensus 395 ~l~~sp~~~~-l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~------ 464 (545)
|++|+|.+.. |++++.|++|.+||+++. .++.++.+|...|.++.|+|.. ..|++++ |+.+.|||+..-.
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999997665 455666999999999975 5788999999999999999976 4566666 9999999997532
Q ss_pred -----CcceEEEEeeCCCceEEEEEcCCCCEE-EEEEcCCeEEEEeCCCC
Q 009059 465 -----KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTEN 508 (545)
Q Consensus 465 -----~~~~i~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~I~iwd~~~~ 508 (545)
..+.+....+|...|..+.|+|+.+++ ++++.|+.+.||.+...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 234566777899999999999999875 55667779999998643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=202.40 Aligned_cols=289 Identities=13% Similarity=0.220 Sum_probs=224.1
Q ss_pred CceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 009059 214 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 293 (545)
Q Consensus 214 ~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~ 293 (545)
..++++|+.|..++.+.-..--. ......+..-.+...--.+++|-.|.+.|+++.|+|....|++|+.|++|++||+.
T Consensus 124 G~lvATGsaD~SIKildvermla-ks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 124 GSLVATGSADASIKILDVERMLA-KSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CcEEEccCCcceEEEeehhhhhh-hcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 35778888887777663221000 00111111111222234688999999999999999999999999999999999987
Q ss_pred CCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee--EeccCcccEEEEEEeCCCCcEEEEEcC
Q 009059 294 SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDN 369 (545)
Q Consensus 294 ~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~--~~~~h~~~V~~l~~~p~~~~ll~s~s~ 369 (545)
.-...+.++ ....+|.++.|+|.|.+|+.|..-.++++||+++-++-+. .-..|++.|+++.+++.+. +.++++.
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSk 281 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASK 281 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEecc
Confidence 543333322 3457899999999999999999999999999998664222 2346899999999999975 6669999
Q ss_pred CCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEc
Q 009059 370 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWN 441 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~s 441 (545)
||.|++||=-.++|+.++.. ...|.+..|..+++++++.+.|..+++|++.+++.+..+.+-. ..-+...|+
T Consensus 282 DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN 361 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN 361 (430)
T ss_pred CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc
Confidence 99999999999999988863 3458899999999999999999999999999999999887642 123445677
Q ss_pred CCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 442 TSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 442 p~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
....|++.-. .+.+.-||.++..... .--.+|.+.+..+.-+|.+.-+++++.|-.+++|--+
T Consensus 362 htEdyVl~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 362 HTEDYVLFPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CccceEEccccccCceeeccccchhhhh--hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 8888888877 5689999999874322 2234789999999999999999999999999999643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=209.82 Aligned_cols=247 Identities=22% Similarity=0.265 Sum_probs=210.4
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l 320 (545)
.+.+|.+.+...+..... -.++|.|++-+|+|.||+.|+..|.|++|.+.+|.++..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 667787777655442222 24679999999999999999899999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCC--------CCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEeccC
Q 009059 321 ATSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~--------~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~ 391 (545)
+||+.||.|.+|.+.. .-.++..+..|+-+|+++...+.+ ...+++++.|.++++||+..+..+..+..+.
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998642 123578899999999999987753 3466799999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCC----------------EEEEEecCCCC--CEEEEEEcCCCCEEEEEe-C
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----------------~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-d 452 (545)
.+.+++.+|.+..+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ |
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 9999999999999999999999999887532 23556778888 999999999999999999 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
|.|+|||+.+. .+++++....++|+.+.+.|-.+.++.
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceec
Confidence 99999999877 677777667788999988665543443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=195.50 Aligned_cols=294 Identities=15% Similarity=0.185 Sum_probs=228.7
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEE---eccC-CccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~---l~~h-~~~V~ 309 (545)
..+.+....+|+|.++....++++ .+..|..+.|+| |.+++++++ .+.+.+|+.+.+.+... ++.+ ...|.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl 250 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVL 250 (626)
T ss_pred cCCCccccchhhchhhhccCccee---ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEE
Confidence 345667889999999987766654 456799999999 455666665 68999999988766543 3333 36799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-----
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----- 384 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~----- 384 (545)
|++|.++|. ++||..+|.|.||+...... .+....|.+.|.+++...+| .++ +|+.|..|..||-. -+.+
T Consensus 251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~-y~k~r~~el 325 (626)
T KOG2106|consen 251 CVTFLENGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDN-YRKLRETEL 325 (626)
T ss_pred EEEEcCCCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCc-cEe-ecCccceEEecccc-ccccccccC
Confidence 999999876 78999999999999987665 44444999999999999886 455 79999999999832 1111
Q ss_pred -------eE------------------------------EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 385 -------GV------------------------------FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 385 -------~~------------------------------~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
++ +.+......++.+|..+.+++++.|+.+++|+ ..+.+.+
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 00 11122345678889889999999999999999 4444444
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.. -..++.|+.|+|.| .++.|. .|...+.|.++. ..+.... ...++.++.|+|+|.+|++|+.|+.|+||.+.
T Consensus 404 ~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 43 46789999999999 888888 999999999874 3343333 38899999999999999999999999999886
Q ss_pred CCeEE--Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL--TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~--~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+... ... -|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 65433 222 3448999999999999999999999999884
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=191.27 Aligned_cols=283 Identities=21% Similarity=0.340 Sum_probs=220.5
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCe----------EEE-----EeccCCccEEEEEEcC-CCCEE
Q 009059 258 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKS-----TLEEHTQWITDVRFSP-SLSRL 320 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~----------~~~-----~l~~h~~~V~~l~~sp-~~~~l 320 (545)
..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++... .+. .-.+|...|..+.|-| |..+|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457999999999998 79999999999999999997532 111 1136888999999999 66789
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
.+++.|.+++|||..+-+. ...|. -.+.|++-+++|- ...|+++|..+-.|++.|+..|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 9999999999999998664 44454 4678998888884 356888999999999999999999998874 46799999
Q ss_pred EeCCCCEEE-EEECCCeEEEEECCCC-EEEEEe--------------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 398 FQPRLGRIL-AAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 398 ~sp~~~~l~-~~~~dg~I~i~d~~~~-~~~~~~--------------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
|+|...+++ +++.||.|++||++.. -+...+ ..|.+.|+.++|..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999877755 5667999999999864 333322 24677899999999999999988 999999999
Q ss_pred CCCCCcceEEEEeeCCC----ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 461 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~~~----~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.++.....-.....|.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|-..|.+.++-|+-..+.++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88754221111111111 111 22 334444555556689999999888888 677898899999999999999999
Q ss_pred eCCCcEEEc
Q 009059 536 SHDKCVKIW 544 (545)
Q Consensus 536 s~Dg~I~iW 544 (545)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=206.91 Aligned_cols=242 Identities=20% Similarity=0.322 Sum_probs=197.0
Q ss_pred ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe---------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 302 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~---------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
-.|.+.|+.+++-|. ..++++.+..+.|.|||...... +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 358999999999995 45677788899999999864321 12278899998999999998888888999999
Q ss_pred cEEEEECCCCce-------eeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECC--CCEEEEEecCCCCCEEEEEE
Q 009059 372 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 372 ~I~lwd~~~~~~-------~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~ 440 (545)
.|++||+..... ...+. +...|..++|++-. ..|.+++.|+.+.|||++ +.++.....+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 12233 34558899999954 456677789999999999 56667778889999999999
Q ss_pred cCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC---------
Q 009059 441 NTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN--------- 508 (545)
Q Consensus 441 sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~--------- 508 (545)
+|-+ .+||+|+ |++|++||+++.. .+++.+.+|...|..+.|+|.. ..|++++.|+.+.|||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9965 5677788 9999999999765 5899999999999999999976 46777888999999999531
Q ss_pred -----eE-EEeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 509 -----KT-LTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 509 -----~~-~~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
++ ..-.+|...|..+.|+|... .|++++.|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 11 24558999999999999887 677899999999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=210.48 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=226.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE----E---EeccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----S---TLEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~----~---~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.+.||.+.|+++.|+|.+..|++++.|+++.+|...+..-+ . ...+.........|+|++..+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45599999999999999999999999999999987653211 1 2233455688999999999999999999999
Q ss_pred EEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-----eeEEeccCCeeEEEEeCCCC
Q 009059 331 VWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 331 vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~v~~l~~sp~~~ 403 (545)
+|...+... ......||.+.|..++|+|.|++++ +.+.|-+-|+|-.-..+. .+...|....+|++|-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 999443322 2345679999999999999998666 888899999987652211 11222445688999988657
Q ss_pred EEEEEECCCeEEEEECCC----------C---------------------------------E-----------------
Q 009059 404 RILAAAIENYISILDVET----------Q---------------------------------V----------------- 423 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~----------~---------------------------------~----------------- 423 (545)
.++.|+.+..+++|+... + .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 788888888999986421 0 0
Q ss_pred ----------------EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 424 ----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 424 ----------------~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
.+.++.+|...|++++.+|+++++|+++ .. .|++|+..+- ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 0112347888999999999999999987 21 7999998765 556688899999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-----EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|+||+++|++++.|.++.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999988554433 3668999999999999999999999999999994
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=214.41 Aligned_cols=276 Identities=14% Similarity=0.227 Sum_probs=218.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
.+|+..-+.|+|.|+|++|++++.||.|++|+...- +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378888999999999999999999999999997765 4445555588888888874 5599999999999999998876
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~ 417 (545)
. -..+...+-++.+++|+-+|+ +++.|+.|-.|++.++.+......++ +..+|.++.|+|+++.|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 344555667899999999875 55588889999999999887777665 56779999999999999999999999999
Q ss_pred ECCCCEEEEEecCC--------CCCEEEEEEcCCCC-EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 418 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 418 d~~~~~~~~~~~~h--------~~~I~~l~~sp~g~-~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
|+.++.+..++.+- ...+..++|+|+|. +++.+.|+.|++|+.........+ ..+.+...+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCC
Confidence 99998877766541 34567889999954 555555999999998876432222 222344559999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.||++++.+|.|.|||.++... ......|.+++|.|+.+-|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 233467999999999886655555554443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=206.48 Aligned_cols=265 Identities=14% Similarity=0.216 Sum_probs=203.0
Q ss_pred CcccceeeeeecCCc-eeeEEEEe-ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe------------
Q 009059 236 DPRDRVGRSAEVGKG-FTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------ 301 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~-~~~~~~~~-l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l------------ 301 (545)
++.|..+++||...- ..++.++. .......|.++.|++.|..|++.+....++|+|-...+.....
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 445667777775431 11122222 2344557999999999999888888889999997655544332
Q ss_pred ccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEec-----cCcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 302 EEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
++|...++|.+|+|.. ..|+|++.||++||||+.+.+..+..+. +..-+++.++|++++.. ||+|..||.|.+
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQI 343 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceee
Confidence 5799999999999964 5799999999999999987665444333 33457899999999865 668888999999
Q ss_pred EECCCCcee--eEEe--cc--CCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecC--CCCCEEEEEEcCCCCE
Q 009059 376 WSINNGSCA--GVFK--CQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQG--HKNQVHSVCWNTSGEY 446 (545)
Q Consensus 376 wd~~~~~~~--~~~~--~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~--h~~~I~~l~~sp~g~~ 446 (545)
|+....... ..++ |. ..|+++.|+++|++|++-+.|+.+++||++.. +++....+ ...+-+.++|+|+.++
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl 423 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL 423 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceE
Confidence 998543222 1121 22 36999999999999999999999999999975 45554444 2345678999999999
Q ss_pred EEEEe-------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 447 LASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 447 l~s~s-------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
|++|. .+.+.+||..+. ..++.+......|..|.|+|.-+.|++++.||.++||-
T Consensus 424 i~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 424 ILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 99986 237999998776 67778877889999999999999999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=206.39 Aligned_cols=303 Identities=17% Similarity=0.261 Sum_probs=234.8
Q ss_pred ccceeeeeecCCc-ee-eEEEEeecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKG-FT-FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~-~~-~~~~~~l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+..+.+|+...+ .. ......++...+.|+++. +|.. +.++.|+.+|.+.||++++++.+.++.++...|+++.=
T Consensus 132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc
Confidence 3456677776663 11 112333333334477764 5532 35788999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS 391 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~ 391 (545)
+|--..++.|..+|+|.+++++.++. +..|+...+.|+.+.|.-||..+++++...|.+.+||++..+...... +.+
T Consensus 211 sPaLDVVaiG~~~G~ViifNlK~dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~ 289 (910)
T KOG1539|consen 211 SPALDVVAIGLENGTVIIFNLKFDKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG 289 (910)
T ss_pred CCcceEEEEeccCceEEEEEcccCcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC
Confidence 99888999999999999999998775 778874459999999999999999999999999999999887766554 335
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEE--ECCCC-----------------------------------------------
Q 009059 392 GATQMRFQPRLGRILAAAIENYISIL--DVETQ----------------------------------------------- 422 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~--d~~~~----------------------------------------------- 422 (545)
.+....|.+....+++++.|+.+++| |...+
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~ 369 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ 369 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence 56667777766666666666655444 31111
Q ss_pred ---------------------------------------------------------------EE-EEEec-----CCCC
Q 009059 423 ---------------------------------------------------------------VC-RLKLQ-----GHKN 433 (545)
Q Consensus 423 ---------------------------------------------------------------~~-~~~~~-----~h~~ 433 (545)
.. .+.+. ....
T Consensus 370 ~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~ 449 (910)
T KOG1539|consen 370 SQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDI 449 (910)
T ss_pred hHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCc
Confidence 00 00000 0114
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.+++++.++.|++.+.|. .|.|.+|++.++ .....+ ..|..+|+.++...-++.+++++.+|-+++||.++..
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 678889999999999998 889999999888 444445 5789999999999999999999999999999987654
Q ss_pred EE------------------------------------------EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TL------------------------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~------------------------------------------~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 11 2457999999999999999999999999999998
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=188.24 Aligned_cols=257 Identities=19% Similarity=0.315 Sum_probs=198.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC----CCeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 333 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~----~~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd 333 (545)
.+|.+-|.|+.|.+.|+.+|+|+.|.+|+|||.. +..+....+.|.+.|..|.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 3456677789999999999965 489999999999999997
Q ss_pred CCCCC--------eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 334 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 334 ~~~~~--------~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
-.... ....++......|+.+.|.|.. ...+++++.||.||||+.-.--.+........+..+.-
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~------ 163 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID------ 163 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC------
Confidence 63211 1234566778899999999863 34577899999999998764333332222111111100
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCC------cEEEEEcCCCC-CcceEEEEee
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 474 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~---g~~l~s~sdg------~I~vwd~~~~~-~~~~i~~~~~ 474 (545)
....+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 164 ----------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 164 ----------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ----------------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 11235567788999874 4688888855 89999887654 5567778889
Q ss_pred CCCceEEEEEcCC----CCEEEEEEcCCeEEEEeCCCCe--------------------EE-EeccCCCCeeEEEEeCCC
Q 009059 475 TGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 475 ~~~~v~~~~~sp~----~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spd~ 529 (545)
|..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999996 35688999999 9999987311 11 466899999999999999
Q ss_pred CEEEEEeCCCcEEEcC
Q 009059 530 GMVASASHDKCVKIWK 545 (545)
Q Consensus 530 ~~las~s~Dg~I~iWd 545 (545)
..|++.|.||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.7e-24 Score=210.50 Aligned_cols=276 Identities=22% Similarity=0.330 Sum_probs=209.3
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEEcCCCeEE------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 268 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 268 ~l~~sp---dg~~latg~~dg~I~lwd~~~~~~~------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
++.|++ ....||.+..||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+....
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366766 3457999999999999998754333 4456799999999999977899999999999999999876
Q ss_pred eeee--EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce--------------------eeEE-------e-
Q 009059 339 YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------------AGVF-------K- 388 (545)
Q Consensus 339 ~~~~--~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~--------------------~~~~-------~- 388 (545)
. .. .+.+|.+.|.+++|.|....+|++|+.||.|.|||++.... .... .
T Consensus 134 l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 134 L-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred e-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 4 43 48899999999999999999999999999999999874320 0000 0
Q ss_pred ccCCeeE---EEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEe--------cCC---CCCEEEEEEcCCCCEEEEEe-C
Q 009059 389 CQSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 389 ~~~~v~~---l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~--------~~h---~~~I~~l~~sp~g~~l~s~s-d 452 (545)
....+.. +.+..|...|++++. |+.|+|||++........ ..| .-.+.++..+..|.+|++.+ |
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 0111333 445556688888777 999999999976543322 223 23678888888888777666 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCc--eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~--v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 528 (545)
+.|++|++.+... ..+..+.++... ...-..+|++.++++|+.|...++|.+...+.- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999999987543 333344433222 223357899999999999999999999887654 67799999999999875
Q ss_pred C-CEEEEEeCCCcEEEcC
Q 009059 529 N-GMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~-~~las~s~Dg~I~iWd 545 (545)
. .-+|++++|-+++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 4 3577779999999996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=192.82 Aligned_cols=257 Identities=19% Similarity=0.298 Sum_probs=215.1
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
|++.-.++++. .++++.+.+|.+.|+.++......++.+++.|.+.+||.++++.+ +..|.+|.+.|++|.|+
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKFH 199 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEec
Confidence 44444555532 356678899999999999988788999999999999999999875 99999999999999999
Q ss_pred CCCCcEEEEEcCCCcEEEEEC------CC--------Cc--------------------------eeeEEe-ccCCeeEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQM 396 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~------~~--------~~--------------------------~~~~~~-~~~~v~~l 396 (545)
+.+ .|+++++.|++-.||.. .. ++ ++..+. +...+.+.
T Consensus 200 ~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred ccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 985 57779999999999961 11 00 111122 22346677
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
.|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+ |-+.++||++. ....+..|.+|
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGH 356 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGH 356 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeeccc
Confidence 7888899999999999999999999999999999999999999999999999999 88999999983 34678889999
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...|++..|..+.+ +++++.|.+|+|||+++.+.. .......+++.++.+..+.+||.--++..|++||
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999998887 899999999999999886544 4456778899999998888888888888899987
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=223.05 Aligned_cols=238 Identities=26% Similarity=0.403 Sum_probs=214.6
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+.+..|...|.|+..-..++.+++|+.|..+-||.+.....+..+.+|..+|.+|.|++...+|++|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 45567899999999997788999999999999999998888888899999999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeE
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
..+. ++++.+|...+..+.|+|-+.+ +++|+.|+.+++||++...|.+.+..+ ..+..+.|+|+|.+++.++.|..+
T Consensus 101 eAk~-vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAKI-VRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred hhhh-hhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 8775 8999999999999999999754 479999999999999988888888754 347888999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+|||+..|+....|..|.+.+.++.|+|..-+++.|+ |++|++||+++. +.+.........|.+..|.|++..+++
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred eeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeec
Confidence 9999999999999999999999999999999999999 999999999876 666666667888999999999997777
Q ss_pred EEcCC
Q 009059 494 IGCYE 498 (545)
Q Consensus 494 ~~~dg 498 (545)
|....
T Consensus 256 G~q~s 260 (825)
T KOG0267|consen 256 GEQIS 260 (825)
T ss_pred Cchhh
Confidence 65543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=205.08 Aligned_cols=261 Identities=17% Similarity=0.304 Sum_probs=217.6
Q ss_pred ccceeeeeecCCceeeEEEEeecC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~ 313 (545)
..+-+++||+.....-..+..|.. ..+-|.+|.+.|||+.|++|+.-.++.|||+..-.+ ...+....-...+++.
T Consensus 438 GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~ 517 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 517 (705)
T ss_pred CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc
Confidence 345678999876533333333332 345699999999999999999999999999975433 3344444456788999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
+||.+..+++..||.|.|||+.+.. .++.|.+|.+.+.||.++++|..|. +|+-|.+||.||+++++.+........|
T Consensus 518 spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 518 SPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred CCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 9999999999999999999999765 4999999999999999999987665 9999999999999999988888888899
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++.+.|.+.++++|-..+.+.|......+ .+.+.-|...|.++.|.+-|+++++.+ |+.+..|....+ ..+...
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqs 671 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS 671 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeec
Confidence 999999999999999999999998876543 445666999999999999999999988 999999998777 444443
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+ ....|.+|.++.+.++|++|+.|....||.+
T Consensus 672 k-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 672 K-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3 3578999999999999999999988888765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-25 Score=221.28 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=222.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+.+++....+-.+++|+... +-.|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34555566667788888653 446888889988877888999999999999999987664 66789999999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
.|++. +.++++|+.+|+|++||++..+.++++.+ ...+..+.|+|-+.+++.++.|..+.+||.+..-+.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 57888999999999999999988887754 45689999999999998899999999999998889999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~- 511 (545)
.|.++.|+|+|++++.++ |..++|||+..+ ..+.+|..|...+..+.|+|..-.++.|+.|+++++||+++.+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 689999999887 778899999999999999999999999999999999999998888
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 512 TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 512 ~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
........|.+++|+|++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 555567889999999999998888654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=208.30 Aligned_cols=238 Identities=17% Similarity=0.257 Sum_probs=200.5
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~ 381 (545)
..|....+.|+|.|+|..|++++.||.|++|+.........++..+...|.+++.... .|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 4688889999999999999999999999999987663334444447888998887643 5669999999999999887
Q ss_pred ceeeE-EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 382 SCAGV-FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 382 ~~~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
+.-.. .+..-++.+++|+.+|.++++|+.|-.|++.++.+......+.+|.++|.++.|+|++.+||+.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 65422 23346799999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCcceEEEEee-------C-CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCC
Q 009059 460 IGSGSKGECIHELSC-------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS--AHDKLVSSLAASTV 528 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~-------~-~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd 528 (545)
+.++. +..++.. . ...+..++|+|++..+++.+.|+.|++|+..+++.. .+. .+...+..+.|+|.
T Consensus 167 ~~~~~---~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 167 LQDGI---LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred cccch---hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 98873 3322221 1 344677899999999999999999999999998877 333 45555999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
|+|||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 99999999999999997
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=184.31 Aligned_cols=234 Identities=18% Similarity=0.271 Sum_probs=190.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..+.|..|.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++ .-+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence 36789999999999999999999999999998764 3444458999999999975 3455999999999999999998
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
...-.+..++.++.+.+..+.+++|+.|+.|++||.+.......+.. ...|.++.. .|..|++|. |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 88888999999999999999999999999999999998666655553 447888776 466677766 99999999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-----eEEEeccCC---------CCeeEEEEeCC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHD---------KLVSSLAASTV 528 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-----~~~~~~~h~---------~~V~~l~~spd 528 (545)
...... ..-......++++++-|++.-+++++-+|.|.+=.++.. +...+..|. -+|++|+|+|-
T Consensus 165 ~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 654321 122234567899999998888999999997776555443 222555554 36999999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
.+.||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=194.93 Aligned_cols=278 Identities=17% Similarity=0.229 Sum_probs=226.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccC-CccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+.+.--...|+|+||+.+.+.||.+-.||.|.||++...- +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444456789999999999999999999999999998643 33455555 4679999999 4567888889999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.+.+. ...+....+.|++++.+|.+. .++.|+.||.++.+++..++....... .+.+.++.|++++..++.|+.|
T Consensus 98 ~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred ccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98775 777777889999999999975 455777899999999888877654432 3679999999999999999999
Q ss_pred CeEEEEECCCCEEEEEec----C----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 412 NYISILDVETQVCRLKLQ----G----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~----~----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
|.|++||+..+..++... + ...-|+++.|..++. |++|. .|+|.+||...+ ..+..+..|...|.++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL 251 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence 999999999987666211 1 223467777776654 55555 999999999887 7788888999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeE--E---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+++.++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|..+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999998888877643 1 45578999999999866 8999999998765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=194.16 Aligned_cols=258 Identities=14% Similarity=0.188 Sum_probs=204.2
Q ss_pred EeCC-CcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 281 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 281 g~~d-g~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
++.| .++.+||+.+|.....+++. ...-..+..- ++.+++++.. ...|.+|.+..... ...+.-..++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-VVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-hhhhcccccceeeeecC
Confidence 3444 45999999999999888765 2222222221 2356666654 45799999986554 33344467889999999
Q ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC---------CCEEEEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 427 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~---------~~~~~~~ 427 (545)
|+|.+++ .|...|.|++|.+.+|..+..+. |-..|+++.|+.++.+|++++.||.|.+|++- +-++++.
T Consensus 91 n~G~~l~-ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGYFLL-AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCceEEE-eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9975444 66688999999999999988775 44569999999999999999999999999863 3467888
Q ss_pred ecCCCCCEEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 428 LQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g--~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+..|.-+|+.+...+.| .+|++++ |.++++||+..+ ..+.++. ....+.+++.+|-++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 99999999999887653 5788888 999999999888 4454443 467899999999999999999999999887
Q ss_pred CCCCe-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 505 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~~~-----------------~~~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 115668888 999999999999999999999999997
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=189.10 Aligned_cols=220 Identities=13% Similarity=0.199 Sum_probs=178.3
Q ss_pred cceeeeeecCCceeeEEEEeecC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
+..+.+|+...+.... ..+.+ -.+.|.+++|++. ..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+
T Consensus 46 ~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~ 122 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN 122 (691)
T ss_pred CCcEEEEccCCCceee--EEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence 4566777777654433 33444 4568999999954 477788889999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----ccC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS 391 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-----~~~ 391 (545)
..++.|+.||.+..++...+..... .+...++.|.++.|+|++..++ +|+.||.|++||...+..+.... ...
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSK 201 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeeccccccc
Confidence 9999999999888888876654333 3445568999999999975555 99999999999999988777332 112
Q ss_pred ----CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 392 ----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 392 ----~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
-|.++.|..+ +.|++|.+-|.|.+||...+..+..+..|.+.|.+++..+++.++++++ |+.|.-|...+.
T Consensus 202 ~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 202 REPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 1567777755 8899999999999999999999999999999999999999988888888 997777765443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=190.49 Aligned_cols=291 Identities=17% Similarity=0.263 Sum_probs=212.6
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCC----CeEEEEeccCCccEEEEEEcC-CCCEEEEEe
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSS 324 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~~----~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s 324 (545)
.+.....++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.+|.|+| +...+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 344566778899999999999943 5889999999999999952 223456778999999999999 456899999
Q ss_pred CCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEEEEeCC
Q 009059 325 ADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPR 401 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l~~sp~ 401 (545)
.||+|++-|++..... +.........+..+.|+.+...++ .++.=|...+||+++... ...+. +...|..++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 9999999999865431 222323445677888888766666 555566999999997654 33232 3457999999997
Q ss_pred CCE-EEEEECCCeEEEEECCCCE----EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCcceEEEEee
Q 009059 402 LGR-ILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSC 474 (545)
Q Consensus 402 ~~~-l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-~~~~~i~~~~~ 474 (545)
..+ +++++.|++++|||++.-. ++.....|...|.+..|+|.+-.|++.+ |..|+|||..-. .......++.
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~- 412 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP- 412 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-
Confidence 555 6677789999999998632 2344456999999999999876677776 999999998411 1112222222
Q ss_pred CC----C--ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeE-EEEeCCCC-EEEEEeCCCcEEEc
Q 009059 475 TG----N--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSS-LAASTVNG-MVASASHDKCVKIW 544 (545)
Q Consensus 475 ~~----~--~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~-l~~spd~~-~las~s~Dg~I~iW 544 (545)
|. . ......|.|+..+|+++-.-..|.|||-+.++.+ .+..- ...|.+ ..|+|-+. +++-++..|.|+||
T Consensus 413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 22 1 2345689999999999999999999999998866 43322 224444 47999888 44455567888888
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=180.76 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=174.2
Q ss_pred ccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe-----------e---eeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 302 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-----------S---LRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 302 ~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~-----------~---~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
..|.+.|+.+...+ .|+|+++|+.||.|.|||+++... + ...-.+|.-.|..+.|.|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35778899999977 689999999999999999985430 0 11234688899999999988889999
Q ss_pred EcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCC---CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
++.|.++++||..+.+....|+.++.|..-+++|-. -.+++|..+-.|++.|+.+|..-+.+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999999999999998842 34666677889999999999999999999999999999998
Q ss_pred CCEE-EEEe-CCcEEEEEcCCCC------------CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 444 GEYL-ASVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 444 g~~l-~s~s-dg~I~vwd~~~~~------------~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
..++ ++|+ ||.|++||++... ....+..-..|.+.|..++|..++.++++++.|..+++|+...++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8765 5566 9999999998642 111222234567889999999999999999999999999998765
Q ss_pred E
Q 009059 510 T 510 (545)
Q Consensus 510 ~ 510 (545)
.
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=186.42 Aligned_cols=244 Identities=18% Similarity=0.366 Sum_probs=189.3
Q ss_pred ecCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcC----------------CCeEEEEeccCCccEEEEEEcC-CCCE
Q 009059 259 IPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSP-SLSR 319 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg--~~latg~~dg~I~lwd~~----------------~~~~~~~l~~h~~~V~~l~~sp-~~~~ 319 (545)
..+|.+.|+.+..++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34678888888877754 456666778999999974 2466788899999999999999 3346
Q ss_pred EEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEEeccCCee
Q 009059 320 LATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGAT 394 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~~~~~~v~ 394 (545)
|++|..-+.|++|...++...+ ..+.+|+..|-.++|+|....+|++|+.||+|+|||++.+ .++.+-.+.+.|+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 8899888999999998876533 4677899999999999999999999999999999999988 5666666778899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCC-EEEE-EeCCcEEEEEcCCCCCcc--
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLAS-VSDELVRVWSIGSGSKGE-- 467 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~-~l~s-~sdg~I~vwd~~~~~~~~-- 467 (545)
.+.|+.+...|++|+.||+++|||++. +.++..++-|..+|++|.|+|... .|++ |.|..|.+||+......+
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999988899999999999999985 577889999999999999999643 3444 449999999986542211
Q ss_pred -------------eEEEEeeCCCceEEEEEcCCCCE-EEEEEcCCeEEEE
Q 009059 468 -------------CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELW 503 (545)
Q Consensus 468 -------------~i~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iw 503 (545)
.+..+......+..+.|++.-+- |++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 01111112345677888887654 44455555 4444
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=198.89 Aligned_cols=305 Identities=17% Similarity=0.245 Sum_probs=230.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCe-------------------
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFT------------------- 296 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~---~latg~~dg~I~lwd~~~~~------------------- 296 (545)
+..+.++.-. ...|..+..+.||.+.|.+++|..-+. +||+++.|..|+||.+.-+.
T Consensus 168 ~~~v~~~s~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 168 KFVVDLYSSS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred ceEEEEeccC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCce
Confidence 3444555444 337888999999999999999988544 89999999999999763211
Q ss_pred --EE----------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee------eeEeccCcccEEEEEEeC
Q 009059 297 --VK----------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP 358 (545)
Q Consensus 297 --~~----------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~------~~~~~~h~~~V~~l~~~p 358 (545)
.. ..+.+|++.|+++.|+|.+..|++++.|.++.+|...+..-. +-...+.....+...|+|
T Consensus 247 f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~ 326 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP 326 (764)
T ss_pred eeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC
Confidence 01 112489999999999999999999999999999988765321 112234456688999999
Q ss_pred CCCcEEEEEcCCCcEEEEECCC-Cceee--EE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC----CEEEEEecC
Q 009059 359 SKEDLLCSCDNNSEIRYWSINN-GSCAG--VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQG 430 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~-~~~~~--~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~ 430 (545)
++..++ +-+..|..++|.... ..... .+ .+-..|..+.|.|.|.+|++++.|-+-++|-.-. ...+..-+-
T Consensus 327 n~~~ii-~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi 405 (764)
T KOG1063|consen 327 NSNVII-AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI 405 (764)
T ss_pred CCCEEE-EecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccc
Confidence 985555 667788999998332 22221 12 2446799999999999999999999999986641 233444456
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-------------------------------------------CC-
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------------------------------------------SK- 465 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-------------------------------------------~~- 465 (545)
|...++|++|-+....+++|. +..+|+|+.... ..
T Consensus 406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 888999999988655666666 668999975310 00
Q ss_pred -----------------------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 009059 466 -----------------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 511 (545)
Q Consensus 466 -----------------------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~ 511 (545)
...++.+-+|+..|++++.+|+++++++++... .|++|+..+....
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 000112446889999999999999999887654 7999999988777
Q ss_pred -EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 -TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 -~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+.+|.-.|+.|+||||+++|++++.|.++.+|+
T Consensus 566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred heecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 6899999999999999999999999999999984
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=181.86 Aligned_cols=285 Identities=19% Similarity=0.335 Sum_probs=220.0
Q ss_pred EeecCCCCCeEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCC---eEEEEe--ccCCccEEEEEEcCC----CCEEEE
Q 009059 257 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESF---TVKSTL--EEHTQWITDVRFSPS----LSRLAT 322 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-----dg~~latg~~dg~I~lwd~~~~---~~~~~l--~~h~~~V~~l~~sp~----~~~l~t 322 (545)
+....|+.+|..++|.+ +...+|++|. ..+.+|..... ..+..+ ..|......++|+-+ ..+||.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567899999999985 3346777764 58889987543 233333 247788888999764 458999
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEEEE
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRF 398 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l~~ 398 (545)
++.-|.|+|.|+.++.. ...+.+|...|+.|.++|+...|+++++.|..|++|++++..|+..+. |...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998775 888999999999999999999999999999999999999999999885 4556999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEE----------------------------EecCCCCCEEEEEEcCCCCEEEEE
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRL----------------------------KLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~----------------------------~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
+.++.++++++.|..|++|++...+... +-.-|...|-|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998432110 112255566666664 5788887
Q ss_pred e-CCcEEEEEcCC-C----------CCcceEEEEeeCCCceEEE--EEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Ee
Q 009059 451 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 513 (545)
Q Consensus 451 s-dg~I~vwd~~~-~----------~~~~~i~~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~ 513 (545)
+ ++.|..|.... . .....+.++......++-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 99999998721 1 1112333444444445444 56777899999999999999999887763 22
Q ss_pred c--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
. .....|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2 2346789999999999999999999999886
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=195.24 Aligned_cols=270 Identities=19% Similarity=0.302 Sum_probs=213.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+++++|+.|+.|.+|.-.-.. +..+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--ILKY 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--eeee
Confidence 799999999999888875 5689999999999999999999999999999999999999999999999876433 2333
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.|.+.|.|+.|+|-.. .+++|+- ...-+|...... +...+....+.+++|..+|.+++.|-.+|+|.+-+......
T Consensus 91 -SH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred -ccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 4899999999999854 5558774 346788876433 33344446788999999999999999999999986544332
Q ss_pred EE--EecCCCCCEEEEEEcCCC-----CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc
Q 009059 425 RL--KLQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 425 ~~--~~~~h~~~I~~l~~sp~g-----~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
+. .-.+...+|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-...+-...|+.+.++|.+++.|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 22 223467899999999963 4666666 66777777653 223322333445678899999999999999
Q ss_pred CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+.+.+|-.+.-..-++...+..|+.++..|++.+++.|+.||+|-.|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999765544447767888999999999999999999999997663
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=190.30 Aligned_cols=265 Identities=15% Similarity=0.196 Sum_probs=211.2
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEE--EEeccCC-ccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~--~~l~~h~-~~V~~l~~ 313 (545)
.|+.++++.++. ..-..++.+.-..-+|.+++|.|+|. .+++++....++.||+++.+.. ..+.++. ..+.....
T Consensus 233 ~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 233 LDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred CCCcEEEEEecC-ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 355566665542 23335666777788999999999999 8999999999999999987654 3334444 35677788
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
++++++|+..+..|.|.+....++.. +..++ -.+.|..++|+.+++.++++| .+|.|++||++...+++.+...+.+
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCcc
Confidence 99999999999999999999988765 55555 567899999999987777554 5889999999999999999877765
Q ss_pred --eEEEEeCCCCEEEEEECCCeEEEEECCC------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCC
Q 009059 394 --TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGS 462 (545)
Q Consensus 394 --~~l~~sp~~~~l~~~~~dg~I~i~d~~~------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~ 462 (545)
+.++.++++.++++|+..|.|.|||.++ .+++..+..-...|+++.|+++..+||.++ ++.+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 5677789999999999999999999764 456666766778999999999999999988 56899998876
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.....-.-.....-+.|+|++|+|.+.+|++|...|.+.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 52211111222334668999999999999999999999999874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=189.75 Aligned_cols=282 Identities=18% Similarity=0.218 Sum_probs=211.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+++||...-....++....... .|.+++|.....+ +|+.+.|+.|++|.-... +....-+.....-.|++.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 45677766544333333222222 3899999986532 334457889999974322 1221111122244555555556
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~ 395 (545)
.|+++|+..+.|+|||++. +.+.+.+++|...|+++.++... .++|+++..|.|.+..+.++.....|.+..+ +.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 8999999999999999994 55688999999999999999875 4666999999999999999988888887633 668
Q ss_pred EEEeCCCCEEE-EEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
+.|++....++ +++.+|.|.+||+....+++.+ +.|..+...|||+|... +|++.+ |..|.+||++......++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-- 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence 99999866655 5667899999999988777654 45999999999999764 555666 999999999875332222
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~ 529 (545)
....+...++|.++|.+|++|...|.|+.||++..+.- .+.+|...|++++|-|..
T Consensus 248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 24678899999999999999999999999999876543 777999999999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=205.23 Aligned_cols=237 Identities=16% Similarity=0.269 Sum_probs=194.3
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCee
Q 009059 266 VESCHFSP-DGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 266 V~~l~~sp-dg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
+..+.|.. +.++|||++..|.|.+||+.. .+.+..|..|+..|+++.|++ ...+|++|+.||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S- 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS- 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-
Confidence 44566765 567999999999999999986 566678899999999999988 466899999999999999998765
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
..++.+....|..+.|+|...+.|+++.+.|.+.+||++... +...+ .|.+.+.++.|+|++.+|++|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 777888889999999999988999999999999999998643 44433 4667899999999999999999999999999
Q ss_pred CCCCEE--EEEecCCCCCEEEEEEcCCCC-EEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEE
Q 009059 419 VETQVC--RLKLQGHKNQVHSVCWNTSGE-YLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 491 (545)
Q Consensus 419 ~~~~~~--~~~~~~h~~~I~~l~~sp~g~-~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l 491 (545)
..+.+. +.++. ...+|.++.|-|... .|++++ |-.|+|||++.. ..+..++..|...++.++|.. +...+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCceee
Confidence 986543 33343 457899999999875 466665 669999999865 356778889999999999966 44567
Q ss_pred EEEEcCCeEEEEeCC
Q 009059 492 LVIGCYETLELWNMT 506 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~ 506 (545)
.+++.|+.|..-.++
T Consensus 326 ~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFK 340 (839)
T ss_pred EeecCccHHHHhhhh
Confidence 888888876554443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=177.86 Aligned_cols=243 Identities=18% Similarity=0.265 Sum_probs=184.0
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
..+++|.+.|++++|+.||++|+|++.|++|+||++++... +++.-. .-+..+.+.|.||...+++++-....++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999986321 111111 1235788999999999999998888999
Q ss_pred EEECCCC---ceeeEE----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc
Q 009059 375 YWSINNG---SCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 375 lwd~~~~---~~~~~~----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s 441 (545)
+|.+... .....+ ++.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 211111 122235566666777889999999999999999 88888777766677888999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCC-----CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe------
Q 009059 442 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK------ 509 (545)
Q Consensus 442 p~g~~l~s~s-dg~I~vwd~~~~~-----~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------ 509 (545)
|+|++|++++ .-.|+||.+--.+ ....+..+++|...|..++|+++...+++.+.||+++|||++-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999974322 234566789999999999999999999999999999999985321
Q ss_pred -EE-----EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 510 -TL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 510 -~~-----~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+ .+.+-.+....++++|.|..||.+.. ..++++
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 11 11222344458999999998876542 335443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=214.53 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=216.1
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEEcCC--C----eEEEEeccCCccEEEEEEcCCCCE----EEEEeCC
Q 009059 268 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 326 (545)
Q Consensus 268 ~l~~spdg~-~latg~----------~dg~I~lwd~~~--~----~~~~~l~~h~~~V~~l~~sp~~~~----l~t~s~d 326 (545)
.++|+|++. +||+|. .+.++.||.+.. . +.+..+. -....+.++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 666653 345666765532 1 2233332 3456889999987665 8899999
Q ss_pred CeEEEEECCCC-----CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---eccCCeeEEEE
Q 009059 327 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRF 398 (545)
Q Consensus 327 g~I~vwd~~~~-----~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~~~~~v~~l~~ 398 (545)
|.|.+||...- ...+.++..|.+.|..++|++...+++++|+.||.|.|||+.+-+.-... ...+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998652 12356778899999999999999999999999999999999875544433 23467999999
Q ss_pred eCCCCEEE-EEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcCCC-CEEEEEe--CC--cEEEEEcCCCCCcceEE
Q 009059 399 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSG-EYLASVS--DE--LVRVWSIGSGSKGECIH 470 (545)
Q Consensus 399 sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g-~~l~s~s--dg--~I~vwd~~~~~~~~~i~ 470 (545)
+..-..++ +++.+|.+.|||++..+.+..+..+.. .+..+.|+|++ ..|++++ |+ .|.+||++... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98755555 555678999999999988887776554 47789999987 3444444 44 89999998654 4566
Q ss_pred EEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEc
Q 009059 471 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 544 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iW 544 (545)
++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+......+..+.|+|... .++.++.||.|.|+
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88999999999999999999999 7777788999999999876 88899999999987
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=185.18 Aligned_cols=243 Identities=19% Similarity=0.355 Sum_probs=189.6
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEEcCCCe---EEE------------------EeccCCccEEEEEEcCC-C
Q 009059 267 ESCHFSP-------DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-L 317 (545)
Q Consensus 267 ~~l~~sp-------dg~~latg~~dg~I~lwd~~~~~---~~~------------------~l~~h~~~V~~l~~sp~-~ 317 (545)
.|++|.. -|+|+|.|+.|..|.|||+.-.. +.. ...+|+..|.+++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36799999999999999975211 111 12369999999999875 4
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~v~~l 396 (545)
..||+|+.|.+|++||+.+++. ..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 5899999999999999999875 8888889999999999999999999999999999999994 3344566777899999
Q ss_pred EEeCCCC-EEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 397 RFQPRLG-RILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 397 ~~sp~~~-~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+|.|... .+++++.||.|+-+|++.. +++.+++.|.+.|.+|+++..- .++++++ |+.|++|++..... ..+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence 9999654 4667778999999999975 9999999999999999998865 4566666 99999999976432 222222
Q ss_pred eeCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCeEE
Q 009059 473 SCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.-.-+...|.++.|+-.+ +++|+..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222233667778887765 555566668999999877654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-21 Score=175.09 Aligned_cols=268 Identities=18% Similarity=0.291 Sum_probs=205.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------------eEEEEec-cCCccEEEEEEc-------CCCCEEEEEeC
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 325 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------p~~~~l~t~s~ 325 (545)
...+.|+|||..|++-+.|..+.+|++..- +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446999999999999999999999987520 0111111 123557777775 56779999999
Q ss_pred CCeEEEEECCCCCeeeeEec--cCcc---cEEEEEEeCCCCcEEEEEcCCCcEEEEEC-CCCceeeE---Ee-----ccC
Q 009059 326 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV---FK-----CQS 391 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~--~h~~---~V~~l~~~p~~~~ll~s~s~dg~I~lwd~-~~~~~~~~---~~-----~~~ 391 (545)
+.-|++||.-+++. ...+. .|.. ...+++|+|||..++ +| ....|++||+ +.|+.... +. ..+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf-aG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe-ec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998874 33333 2333 345899999998877 44 4789999999 55543221 11 134
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcce
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~ 468 (545)
-+.+++|+|... .+++++....+-||.-....++..+-+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 478999999655 677788888999999999999999999999999999999999999999 7799999998653 44
Q ss_pred EEEEeeCCC-ceEEE--EEcCCCCEEEEEEcCCeEEEEeCCC-CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 469 IHELSCTGN-KFHSC--VFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 469 i~~~~~~~~-~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~-~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
+..+..|.. .-..+ ...|++++|++|+.+|.|++||+++ +..+ .+..|...++.++++|--.++|+++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 455554443 33333 4578999999999999999999988 5534 777899999999999998888887754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-21 Score=178.32 Aligned_cols=241 Identities=22% Similarity=0.338 Sum_probs=189.5
Q ss_pred ccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC---------------CCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 302 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~---------------~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
-.|.+.++.++..+- ..+.++-+..|.|.||++.. ...++.++.+|...=++++|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457777888877764 44666667889999999862 1235678889999999999999655556
Q ss_pred EEEcCCCcEEEEECCCCceee----EEeccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 436 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~----~~~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~ 436 (545)
++|..-+.|++|...++.... ...+...|..++|+|. .+.|++++.||.|+|||++.+ .++.. +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 688888899999998865432 2235567899999995 456777888999999999987 34443 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeE----
Q 009059 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 510 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~---- 510 (545)
.|.|+..-.+|++|+ ||+++|||++..+....+..++.|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 8899999999988888999999999999999999965 5678888899999999843211
Q ss_pred -------------EEeccC--CCCeeEEEEeCCC-CEEEEEeCCCcEEEc
Q 009059 511 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 544 (545)
Q Consensus 511 -------------~~~~~h--~~~V~~l~~spd~-~~las~s~Dg~I~iW 544 (545)
.-+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 012234 3568889999864 5899999998 4444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=183.50 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=201.2
Q ss_pred EEcCCCeEEEEeccCCccEEEEEEcCCC--CEEEEEeCCCeEEEEECC---CCCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 290 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 290 wd~~~~~~~~~l~~h~~~V~~l~~sp~~--~~l~t~s~dg~I~vwd~~---~~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
+|+.+......++-+.++|++++|+|.. +++|+|..-|.|-+||+. .....+..+..|..+|.+|.|+|.....+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4555555666777789999999999953 588999999999999994 22233667889999999999999988888
Q ss_pred EEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-EEEecCCCCCEEEEEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 440 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~ 440 (545)
++.+.||+|++-|+++......+.. ......+.|+.+...++++..=|.+.+||+++... ...+.-|...|.++++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999987654433332 22356778888888888998888999999998644 6667778999999999
Q ss_pred cCCC-CEEEEEe-CCcEEEEEcCCCCCcc-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC----CCeEEEe
Q 009059 441 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 513 (545)
Q Consensus 441 sp~g-~~l~s~s-dg~I~vwd~~~~~~~~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~----~~~~~~~ 513 (545)
+|-. .+|++++ |++++|||++.-.... .+.....|...|.+..|+|.+-.|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9976 5677788 9999999998754433 234445688999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~h~~------~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33432 234568999999999999888888775
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=181.43 Aligned_cols=247 Identities=17% Similarity=0.237 Sum_probs=197.4
Q ss_pred CcccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
...|+.+++|.-.... .+..+..+.+. .-+|++......|+++||..+.|+|||+....+.+.+++|...|+++.++
T Consensus 53 ~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN 130 (673)
T KOG4378|consen 53 MAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN 130 (673)
T ss_pred cCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec
Confidence 4557788888654431 12222223332 44555555555899999999999999999767778889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS 391 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~ 391 (545)
....|||+++..|.|.|..+.++.. ...|... ...|.-+.|+|..+.+|.+++.+|.|.+||+....++..+. |..
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA 209 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA 209 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence 9999999999999999999998764 4444433 34566999999999999999999999999999877766543 556
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
+...++|+|... .|++.+.|..|++||.+..+....+. ...+...++|.++|.+|++|. .|.|..||++..+ ..+
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv 286 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APV 286 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCc
Confidence 788999999654 46678889999999999877666655 466889999999999999999 9999999999754 677
Q ss_pred EEEeeCCCceEEEEEcCCC
Q 009059 470 HELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~ 488 (545)
..+..|...|++++|-+.-
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 8888899999999998764
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-20 Score=181.32 Aligned_cols=135 Identities=22% Similarity=0.354 Sum_probs=108.3
Q ss_pred CCCeEEEEECCCC-EE----EEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCc
Q 009059 410 IENYISILDVETQ-VC----RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNK 478 (545)
Q Consensus 410 ~dg~I~i~d~~~~-~~----~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~ 478 (545)
..|.|-||+++.. +. +-.+. ....|+.+.|.| |...|++++ ||.|++|.+..+.. ...-..+..|...
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 4567777777642 11 11111 456799999999 556777777 89999999987533 2344567789999
Q ss_pred eEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|+++.|+|-. ..|++++.|.+|++||+.+.+.. .+.+|.+.|..++|||+|+.+|+.+.||+|++|+
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999964 56788889999999999998877 8999999999999999999999999999999985
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=187.44 Aligned_cols=250 Identities=16% Similarity=0.234 Sum_probs=187.1
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--eccCCccEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 332 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vw 332 (545)
+....+|.+.|..+.|-|....|++++.|.++++||++..+++.. +.+|...|.+++|.+. ...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 355678999999999999666899999999999999999888866 8899999999999995 5588999999999999
Q ss_pred ECCCCCe--------------------------eeeEeccCcccEEE---EEEeCCCCcEEEEEcC-CCcEEEEECCCCc
Q 009059 333 DTENPDY--------------------------SLRTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGS 382 (545)
Q Consensus 333 d~~~~~~--------------------------~~~~~~~h~~~V~~---l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~ 382 (545)
|++-... .+.....+...|.+ +.+..|.. .|++++. |+.|+|||++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccc
Confidence 9873320 01112233334444 33444544 4556655 9999999998755
Q ss_pred eeeEEe--------c----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCC--CEEEEEEcCCCCE
Q 009059 383 CAGVFK--------C----QSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKN--QVHSVCWNTSGEY 446 (545)
Q Consensus 383 ~~~~~~--------~----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~--~I~~l~~sp~g~~ 446 (545)
+..... . .-++.++.....|.+|++.+.|+.|+.|++.+. .++..+.++.. .-..-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 433221 1 124778888888999999999999999999864 33444444322 2223356899999
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~ 508 (545)
|++|+ |...++|.+.+.. .....+.+|.-.|++++|.|.. .-+++++.|..++||++..+
T Consensus 332 l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999 9999999998764 4455677899999999998753 23777788889999999654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=185.58 Aligned_cols=242 Identities=19% Similarity=0.266 Sum_probs=198.7
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
-..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.|++|+|.....++..+.+..+.+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345689999999999999999999999999999999999875 76665 4568999999998766554444444444444
Q ss_pred CCCC--------------------------------------ceeeEEeccCCeeEEEEeCCCCEEEEEECC---CeEEE
Q 009059 378 INNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISI 416 (545)
Q Consensus 378 ~~~~--------------------------------------~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~I~i 416 (545)
..-| .....+.+...|..+.|+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 3211 012344566778999999999999988764 47999
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
+++.......-|....+.|.++.|+|...+|++++...|+|||+... ..+..+......|..++++|.|..|++++.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99987766666766778999999999999999999999999999765 555566666778999999999999999999
Q ss_pred CCeEEEEeCCCCeE-E-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 497 YETLELWNMTENKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 497 dg~I~iwd~~~~~~-~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
|+.+..||+.-... . ++..|...|++++|++.-.++++|+.||++.||
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 99999999976533 3 788899999999999999999999999999886
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=174.37 Aligned_cols=279 Identities=17% Similarity=0.262 Sum_probs=207.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC---------eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 262 STSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 262 H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~---------~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
...+|..+.|.++.. .||||+.|..|+||-++.. +....+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 345799999999776 9999999999999977532 233567789999999999999999999999999999
Q ss_pred EECC--------C-----C--CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeE
Q 009059 332 WDTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQ 395 (545)
Q Consensus 332 wd~~--------~-----~--~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~ 395 (545)
|... + . -...+.+.+|...|+.++|+|++. ++++++.|..+++||+..|.....+..+ ..+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 9766 2 1 112356778999999999999975 5559999999999999999998877644 45889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--------C-----------CC----CCEEEEEEcCCCCEEEEEe-
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------G-----------HK----NQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~-----------h~----~~I~~l~~sp~g~~l~s~s- 451 (545)
++|.|-+.++++-+.|...+++.+.....+.... . |. .....++|+|+|.+|++..
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 9999998999988888877777765443322111 0 11 1345678999999988753
Q ss_pred ----CC-----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-----------------CCCEEEEEEcCCeEEEEeC
Q 009059 452 ----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 452 ----dg-----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-----------------~~~~l~~~~~dg~I~iwd~ 505 (545)
.+ ..++|+-.. ....+..+.+.......+.|+| -++.+++....+.|+|||.
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred eeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 22 234554332 1233344444444444444443 2345677777789999999
Q ss_pred CCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 506 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 506 ~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+-.++ .-.-|-..|+.++|++||.+|+..+.||...+
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 998777 33458899999999999999999999997543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=175.00 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=213.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~------~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
..+-+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....+.|++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999999999999999999999999863 34444443 4668999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc----eeeEEeccCCeeEEEEeCC
Q 009059 328 TVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~----~~~~~~~~~~v~~l~~sp~ 401 (545)
+|.+.|+++... +..+. ...+.|+.+..+|. .+++++.+.++.|.+||++... ++..-........+.|+|.
T Consensus 128 ~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999998654 44443 22358999999999 5667788899999999998654 2222233455788999997
Q ss_pred CCEEE-EEECCCeEEEEECCCCEE-EEEe------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 402 LGRIL-AAAIENYISILDVETQVC-RLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 402 ~~~l~-~~~~dg~I~i~d~~~~~~-~~~~------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
...|+ +....+.+.+||.+.... +... ......-..+.|+|+|..|.+.- ...-.+||+-+.. ..+..+
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~ 283 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKS 283 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEec
Confidence 66554 555678999999986432 2221 11122346788999999888776 4466677876531 122222
Q ss_pred ee------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC------------------------CeEEEeccCCCCeeE
Q 009059 473 SC------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSS 522 (545)
Q Consensus 473 ~~------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~------------------------~~~~~~~~h~~~V~~ 522 (545)
.. ....+.+|+|..+.. +++|+.+-.|++|.+.. +....+.+|...++.
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 21 123467788887776 88888888999998732 122367799999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.|+|...+|++.+..+.+|||-
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeecCCcceEeccchhhheeccc
Confidence 99999999999999999999993
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-18 Score=173.73 Aligned_cols=298 Identities=28% Similarity=0.439 Sum_probs=237.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+... .......+..|...|.+++|+|+++++++++. |+.+++|+...+..+..+.+|...|.+++|+|+
T Consensus 132 ~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 132 LDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred CCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence 366888898776 23356778899999999999999999988885 999999999998899999999999999999999
Q ss_pred CC-EEEEEeCCCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEE-eccCC
Q 009059 317 LS-RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSG 392 (545)
Q Consensus 317 ~~-~l~t~s~dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~-~~~~~ 392 (545)
+. ++++++.|+.|++||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... ...+ .+...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 88 555658999999999885554 45 688888776 44899997 5566899999999999987664 3333 34567
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEE-e-CCcEEEEEcCCCCCcce
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~-s-dg~I~vwd~~~~~~~~~ 468 (545)
+.++.|.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... .
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~ 363 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---P 363 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---e
Confidence 8999999988888888889889999999887766665 788889999994332556655 4 8889999998763 2
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEE-EEcCCeEEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...... ...+..+.+.+ ...++. +..++.+.+|+............. ..+....+++++.++++++.++.+++|+
T Consensus 364 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 364 LKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred eEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 222222 22288889988 543444 578889999999998888554444 8899999999999999999999999995
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=204.91 Aligned_cols=243 Identities=19% Similarity=0.355 Sum_probs=201.2
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCcEEEEEcCCC------eEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 009059 264 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 332 (545)
Q Consensus 264 ~~V~~l~~spdg~~----latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vw 332 (545)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|.+.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34677999987665 888999999999997652 34466778999999999999654 99999999999999
Q ss_pred ECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC---eeEEEEeCCCC-EEEE
Q 009059 333 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLG-RILA 407 (545)
Q Consensus 333 d~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~---v~~l~~sp~~~-~l~~ 407 (545)
|+.+.+.+... -....+.|.+++|+..-.++|++++.+|.+.|||++..+.+-.+..... +..+.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99976543332 2224578999999998889999999999999999998887776664444 77899999865 4555
Q ss_pred EECCC---eEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 408 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 408 ~~~dg---~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
++.|. .|.+||++.. ..++.+++|...|.++.|++.+ ++|++++ |+.|.+|+..++ +.+.++....+++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999864 5677788999999999999977 7788877 999999999988 888899888999999
Q ss_pred EEEcCCCC-EEEEEEcCCeEEEEeCCCCe
Q 009059 482 CVFHPTFP-SLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 482 ~~~sp~~~-~l~~~~~dg~I~iwd~~~~~ 509 (545)
+.|.|... .+++++-+|.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 67888899999999987654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=175.66 Aligned_cols=237 Identities=14% Similarity=0.298 Sum_probs=184.0
Q ss_pred cEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCC--eeee------------------EeccCcccEEEEEEeCC
Q 009059 307 WITDVRFSP-------SLSRLATSSADRTVRVWDTENPD--YSLR------------------TFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 307 ~V~~l~~sp-------~~~~l~t~s~dg~I~vwd~~~~~--~~~~------------------~~~~h~~~V~~l~~~p~ 359 (545)
...|++|.. .|+|+|.|+.|..|.|||+.-.. .+.. .-.+|+..|.++.|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 346777743 36799999999999999986211 1111 12368999999999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
-..+|++|+.|.+|++||+.++++...+. +...|.++.|+|.. ..|++|+.|++|.++|.+........-...+.|-.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 89999999999999999999999999998 45679999999964 56778889999999999953222211124578999
Q ss_pred EEEcCCCCEEE-EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEEEec
Q 009059 438 VCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTLTLS 514 (545)
Q Consensus 438 l~~sp~g~~l~-s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~~~~ 514 (545)
++|.|.....+ ++. ||+|+-+|+|... .++.++..|...|.++++++.-+ ++++++.++.|++|++.........
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 99999765433 344 9999999999764 78999999999999999988764 5778888999999999766554333
Q ss_pred cCC---CCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 515 AHD---KLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 515 ~h~---~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
.|. +...|+++.|+-. +||.|+..+.++|||
T Consensus 413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccccceeecccCCCcceEEEecCccceEEEee
Confidence 333 3456667777654 778888888999997
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-18 Score=173.25 Aligned_cols=284 Identities=30% Similarity=0.505 Sum_probs=228.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccCC-ccEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHT-QWITDVRF-SPSLS-RLATSSA-DRTVRVW 332 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h~-~~V~~l~~-sp~~~-~l~t~s~-dg~I~vw 332 (545)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466889999999999999999999999999999998876 666666644 37777777 78777 5555445 9999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEE-E
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA-A 409 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~-~ 409 (545)
+..........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.. ...+.+++|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99873344788889999999999999987 4446664 99999999998777777774 5679999999987744444 7
Q ss_pred CCCeEEEEECCCCEEEE-EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 410 IENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
.|+.|.+||...+.... .+.+|.... ...|++++.++++++ |+.+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999887777 688888875 448999998888777 99999999987643 23333667889999999998
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCCCCEEEEE-eCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLS--AHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd~~~las~-s~Dg~I~iWd 545 (545)
+..+++++.++.+.+||....... ... .|...+..+.|.+++..++.+ ..|+.+.+|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888888888888999999888766 333 788889999994332455555 6888898885
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=168.85 Aligned_cols=285 Identities=19% Similarity=0.207 Sum_probs=202.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+....++ .|...|+.+.--|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4567889999999999998774 8889999999999999988888888 67888999998887 5788889999999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCC-----CC---cEEEEEcCCC-cEEEEECCCCceeeEEe-----ccCCeeEEEEe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ 399 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~-----~~---~ll~s~s~dg-~I~lwd~~~~~~~~~~~-----~~~~v~~l~~s 399 (545)
+..... ..-|.-.++++.|.+. .+ .+++.-++.. .+.+-|......+.... ..+.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986443 1223344555555432 11 1121111100 11112221111111111 11235555543
Q ss_pred CC-CC--EEEEEECCCeEEEEECCCCEEEE----------EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC-
Q 009059 400 PR-LG--RILAAAIENYISILDVETQVCRL----------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS- 464 (545)
Q Consensus 400 p~-~~--~l~~~~~dg~I~i~d~~~~~~~~----------~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~- 464 (545)
.. +. .+++|..+|.+.+||+.++..+. ....|..+|.++.+.+.-..=++|+ +..+..|++....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 32 22 35566679999999999974433 3445889999999987544445555 7788999886542
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
......++......|..+.+.||++.+++++.|+.|+||..++...+ .+..|.+.|++++|+|+..++|.++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 11222334445667899999999999999999999999999999988 77889999999999999999999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=184.38 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=200.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--------CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--------~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
.++..|.+.|..++|.+-...|++++.||+|.+|++. ..+++.+|.+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3788999999999999999999999999999999983 24677899999999999999999999999999999
Q ss_pred EEEEECCCC---------CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---ccCCeeEE
Q 009059 329 VRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM 396 (545)
Q Consensus 329 I~vwd~~~~---------~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~~~~v~~l 396 (545)
|+.|++... ......+.||.+.|+.++++.....|+ +|+.||++++|+...... .+|. ..+....+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999966421 123457889999999999999866655 999999999999887665 3332 22334555
Q ss_pred EEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecC-------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 397 RFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 397 ~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~-------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
.+.... ...++...-+.-.+++.+....+..+.. ....+..+.++|.+.+.+++. |+.|+++|..++ .
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---~ 522 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---K 522 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---c
Confidence 554432 2233333344444555555544444332 124578889999999988888 889999999888 7
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 517 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 517 (545)
.++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88888899999999999999999999999999999999777665 444443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=163.79 Aligned_cols=233 Identities=15% Similarity=0.238 Sum_probs=180.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~ 387 (545)
..|+.|++.|.+||+|+.||.|.|||+.+... .+.+.+|..+|.+++|+++|..|+ +++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-ar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-ARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-hhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence 78999999999999999999999999998764 788999999999999999987666 9999999999999999999999
Q ss_pred eccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC----CCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 388 KCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK----NQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~----~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
....+|..+.|+|.....++++ .+..-.+.++...+....-.... ....+..|.+.|+|+++|. .|.+.++|..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 9999999999999655444433 34444455554422111111111 1223346889999999999 8999999998
Q ss_pred CCCCcceEEEEeeCC-CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----Eec-cC-------CCCeeEEEEeCC
Q 009059 462 SGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLS-AH-------DKLVSSLAASTV 528 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~-~h-------~~~V~~l~~spd 528 (545)
+. +++..++... ..|..+.|+..|++|+.-+.|..|+.|+++.-... ... .| ...=.+++|+.+
T Consensus 184 t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 77 7888877666 78999999999999999999999999998632111 110 11 122346789999
Q ss_pred CCEEEEEeCC-CcEEEcC
Q 009059 529 NGMVASASHD-KCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~D-g~I~iWd 545 (545)
|.|++.++.. ..++||.
T Consensus 261 geYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWE 278 (405)
T ss_pred ccEEEeccccceeEEEEe
Confidence 9999887743 4688884
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-17 Score=166.86 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=186.2
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC-CCeE--EEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~-~dg~I~lwd~~-~~~~--~~~l~~h~~~V~~l~~ 313 (545)
.+..+++|+..+...+..++.+.. .+....++++|++++|++++ .++.|.+|++. +++. +.... .......++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 356778888864445556666653 45677899999999987764 57899999986 3332 22222 2345678999
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----
Q 009059 314 SPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---- 385 (545)
Q Consensus 314 sp~~~~l~t~s~-dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---- 385 (545)
+|++++|++++. ++.|.+|++++... .+..+. +...+.+++++|+++.++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 999999888765 88999999974332 122222 334567788999998888888888999999997633221
Q ss_pred ---EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCC--C--EEEEEecCC------CCCEEEEEEcCCCCEEEEEe
Q 009059 386 ---VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------KNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 386 ---~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~I~~l~~sp~g~~l~s~s 451 (545)
..........+.|+|++++++++.. ++.|.+||+.. + +.+..+..+ ......+.++|++++|+++.
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 1223455788999999999988876 89999999973 2 333333221 12334688999999999986
Q ss_pred --CCcEEEEEcCCCC-CcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 452 --DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 452 --dg~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
++.|.+|++.... ....+..... ......+.|+|++++|+++.. +++|.+|+++
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6799999996542 1122333322 235567899999999998886 7799999874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=169.69 Aligned_cols=265 Identities=10% Similarity=0.183 Sum_probs=183.1
Q ss_pred EEEeCCCcEEEEEcCC-Ce--EEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCeeeeEeccCcccEEE
Q 009059 279 ATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 279 atg~~dg~I~lwd~~~-~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~ 353 (545)
++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...........+....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 445554 345677899999999987765 478899999973 22211111123345678
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCC-Cc---eeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEE--
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL-- 426 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~---~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~-- 426 (545)
++|+|+++.++++...++.|.+|++.+ +. .+..+........++++|++++++++.. ++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 999999988887777789999999974 22 2233333345778899999999877765 6999999997632221
Q ss_pred -----EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC-CCcceEEEEeeC------CCceEEEEEcCCCCEEE
Q 009059 427 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 -----~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~-~~~~~i~~~~~~------~~~v~~~~~sp~~~~l~ 492 (545)
... .......+.|+|+|++++++. ++.|.+|++... .....+..+... ......+.++|++++++
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 111 234567899999999998887 779999999742 122334443321 11234688999999999
Q ss_pred EEEc-CCeEEEEeCCCCe-EEEeccC---CCCeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 009059 493 VIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 545 (545)
Q Consensus 493 ~~~~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spd~~~las~s~-Dg~I~iWd 545 (545)
++.. ++.|.+|++.... ...+.++ ......+.|+|+|++|+++.. +++|.||+
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 9865 5699999985432 2222222 235678999999999998775 88999984
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=164.83 Aligned_cols=228 Identities=14% Similarity=0.258 Sum_probs=185.6
Q ss_pred EeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 300 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
.+.+|+++|.+++|+| +...||+|+.|.+|.||.+..+. .++..+.+|...|-.++|+|.-.++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 66789999999999999987543 3467889999999999999999999999999999
Q ss_pred EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s 451 (545)
|.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|..+|.++.+|.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999889999999999999999999999999999999999988877876 445667888899777664
Q ss_pred ----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEE--E--eccCCCCeeE
Q 009059 452 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL--T--LSAHDKLVSS 522 (545)
Q Consensus 452 ----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~--~~~h~~~V~~ 522 (545)
+..+-+||....+......++.. .+.|.---|.++...++.++ .|+.|+.|.+...... . ......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 56899999887766555555553 45676677889888776665 5779999999877633 1 1123334445
Q ss_pred EEEeCC
Q 009059 523 LAASTV 528 (545)
Q Consensus 523 l~~spd 528 (545)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555553
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=165.52 Aligned_cols=254 Identities=19% Similarity=0.237 Sum_probs=189.9
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--------C--------CeEEEEeccCCccEEEEEEcC
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------S--------FTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--------~--------~~~~~~l~~h~~~V~~l~~sp 315 (545)
.+..+..|..|...|++|.|+|+|++||+|+.+|.|.+|... + ......+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 556678889999999999999999999999999999999754 2 334567789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------- 388 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------- 388 (545)
++.++++++.|..+++||+..+.. ...+.+|...|..++|.|-+.+ +++-+.|...+.+.+.....+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchhhhh-hhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 999999999999999999998875 8889999999999999998654 4477777767776665433222111
Q ss_pred -------------ccC----CeeEEEEeCCCCEEEEEEC----CC-----eEEEEECCC-CEEEEEecCCCCCEEEEEEc
Q 009059 389 -------------CQS----GATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 389 -------------~~~----~v~~l~~sp~~~~l~~~~~----dg-----~I~i~d~~~-~~~~~~~~~h~~~I~~l~~s 441 (545)
+.. -...++|+|+|..+++.+. .+ ..++|+-.. .++...+.....++..+.|+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~ 291 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS 291 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence 001 1346789999888887542 22 345665443 24455555555555555554
Q ss_pred C------------------CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 442 T------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 442 p------------------~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
| .+-.++.++.+.|+|||..+.....++ -..|...++.++|+++|..|++.+.||..-+.
T Consensus 292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 4 344567777889999999876443333 34578899999999999999999999966555
Q ss_pred eCCCCe
Q 009059 504 NMTENK 509 (545)
Q Consensus 504 d~~~~~ 509 (545)
-++..+
T Consensus 370 tfe~~e 375 (434)
T KOG1009|consen 370 TFEPWE 375 (434)
T ss_pred EEcchh
Confidence 554433
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=166.39 Aligned_cols=269 Identities=16% Similarity=0.293 Sum_probs=189.8
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCee-eeEeccCc-ccE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHS-TTV 351 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~-~~V 351 (545)
..+|++-..|.|++||..+++.+..+++|...+..++|.. ....+.+|+.||+|++||++..... ...+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888999999999999999999999999999999976 4668999999999999999876542 33455555 456
Q ss_pred EEEEEeCCCCcEEEEEc----CCCcEEEEECCCCce-eeEE--eccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCE
Q 009059 352 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVF--KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 423 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s----~dg~I~lwd~~~~~~-~~~~--~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~ 423 (545)
.+++.+-. ..++++|. .+-.|.+||++..+. +..+ .|...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 45776664 466899999998766 4444 366789999999964 567788889999999998642
Q ss_pred E---EEEecCCCCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCcceEEEE--e-------eCCCceEEEEEcCCCC
Q 009059 424 C---RLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHEL--S-------CTGNKFHSCVFHPTFP 489 (545)
Q Consensus 424 ~---~~~~~~h~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~~~i~~~--~-------~~~~~v~~~~~sp~~~ 489 (545)
. +...-.|...|.++.|..++ ++.+........+|++..+......... . .....+..+....+..
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 2 22333477889999999888 5444444889999999877421111000 0 0001111222222344
Q ss_pred EEEEEEc-CCeEEEEeCC---CCeEE----Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~-dg~I~iwd~~---~~~~~----~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++++. .+...++-+. .+... .+. +|...|.++.|.-.+.++.|||+||.+.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4555544 5555555433 33222 344 4778899999988889999999999999995
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=173.02 Aligned_cols=208 Identities=18% Similarity=0.310 Sum_probs=161.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 331 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~v 331 (545)
.-+.|.||++.|+|++|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44678999999999999999999999999999999999888888777 58999999999998 5678999999999999
Q ss_pred EECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE----------eccC
Q 009059 332 WDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF----------KCQS 391 (545)
Q Consensus 332 wd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~----------~~~~ 391 (545)
+|+.. .......+..|...|..|+..|++...+.++++||+|+-+|++...... .. ..--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 2334566778999999999999998999999999999999998632111 11 0012
Q ss_pred CeeEEEEeCCCC-EEEEEECCCeEEEEECCC--------CE----------EEEEec-CCC--------C---CEEEEEE
Q 009059 392 GATQMRFQPRLG-RILAAAIENYISILDVET--------QV----------CRLKLQ-GHK--------N---QVHSVCW 440 (545)
Q Consensus 392 ~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~--------~~----------~~~~~~-~h~--------~---~I~~l~~ 440 (545)
...++.++|... +|++|+.|-..++||.+. +. ++..+. +|- . .++.+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 357889999654 567788899999999431 11 122121 121 1 2566789
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
+|+|.-|++.- ...|+++|+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99997666665 55899998854
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=157.28 Aligned_cols=287 Identities=19% Similarity=0.250 Sum_probs=197.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCC-------CcEEEEEcCC---------CeEEEEe
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTL 301 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~d-------g~I~lwd~~~---------~~~~~~l 301 (545)
+.-+.+.....+...-.-+.|..|.+.|..++-+| |.+.|+++..+ ..+.||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 34444444444433333467888999999999999 66677777542 3578998753 2334444
Q ss_pred c-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-----ccCcccEEEEEEeC--CCCcEEEEEcCCCcE
Q 009059 302 E-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEI 373 (545)
Q Consensus 302 ~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I 373 (545)
. .+-+.|.|+.|.|++..|++-. |..|.+|++.+....+..+ ..+....++-+|+| ++. .+++. .|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt-~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT-SDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe-CCCcE
Confidence 4 4566899999999999998875 8899999998766523222 23566788899998 443 44343 48999
Q ss_pred EEEECCCCceeeEEe--ccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCC-CEEE
Q 009059 374 RYWSINNGSCAGVFK--CQSGATQMRFQPRLGR-ILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG-EYLA 448 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g-~~l~ 448 (545)
..||+++..+...+. +...+..+.|+|+..+ |++++.||.|+|||.+. ..++..+.+|...|.++.|+|.. .+|.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999888777665 3345899999998766 45566799999999985 56788999999999999999964 5666
Q ss_pred EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC
Q 009059 449 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 449 s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 527 (545)
+++ |..|.+|...+-..... +.|..+....-.......++ -+..+.+.++..|+..|.+++|+.
T Consensus 276 s~~SDs~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~aWSs 340 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALAWSS 340 (370)
T ss_pred ecCCCceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEeecc
Confidence 666 88999998655322111 11111110000000000111 234455557778999999999987
Q ss_pred CCC-EEEEEeCCCcEEE
Q 009059 528 VNG-MVASASHDKCVKI 543 (545)
Q Consensus 528 d~~-~las~s~Dg~I~i 543 (545)
-.. ++|+-++||++.|
T Consensus 341 adPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 341 ADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCeeEEEeccCceEEe
Confidence 665 6788999999876
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=190.37 Aligned_cols=273 Identities=18% Similarity=0.291 Sum_probs=215.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.++.+.+|...|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee------EEeccCCeeEEEEeCCCCEEEEE
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------VFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~------~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
..+. ++..+.+|++.|++|+|+|-. +.+.||++++||.+ ...+. .+.....+..+.|...+..++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccc
Confidence 9866 588999999999999999863 67789999999988 22111 11222346677777788889999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+.|+.-..|...... .+...+.-+.++.+- .+.+++- +-.+++|++.++ ...+.+.+|...+..+.+||
T Consensus 335 s~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecC
Confidence 999888777654321 122222222222222 3444444 778999999888 66777888999999999999
Q ss_pred CCCE-EEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 487 TFPS-LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 487 ~~~~-l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
-... ...++.||.+.|||+-.+..+ ...+| ..+..-+||+||..++....-|.+.|.
T Consensus 406 fn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 7754 457788999999999988777 33454 456667899999888887777777764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-17 Score=175.46 Aligned_cols=279 Identities=16% Similarity=0.229 Sum_probs=208.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccC---CccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h---~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...-..+.|+|-...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334567889998888999887789999999999998877654 45688998865 5668999999999999974322
Q ss_pred C----eeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC--CeeEEEEeC-CCC
Q 009059 338 D----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQP-RLG 403 (545)
Q Consensus 338 ~----~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~--~v~~l~~sp-~~~ 403 (545)
. ..+..+.+ ..+.-.-++|......|+++|+ -..|+|||.....++..+.... .++.+.-+- .|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 11222221 1122245677777777776654 7899999999888877766443 356665443 468
Q ss_pred EEEEEECCCeEEEEECCCC---EEEEEecCCCCC--EEEEEEcCCCCE-EEEEe-CCcEEEEEcCCCCCcceEEEEeeC-
Q 009059 404 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT- 475 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~--I~~l~~sp~g~~-l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~- 475 (545)
.+++|..||.|++||.+.. ..+...+.|... |..+.+.+.|-- |++|+ ||.|++||++.... ....++..|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999864 346677778887 999999887644 88888 99999999998532 222233322
Q ss_pred --CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-------CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 476 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 476 --~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+...+++..|++...+++|+. +.|+||++.......+.. ..+.+.+++|+|..-+||+|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 335999999999998888888 999999998766553332 23568999999999999999999999998
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=176.81 Aligned_cols=292 Identities=20% Similarity=0.313 Sum_probs=228.1
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC--CCCEEEEEeCCCeE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 329 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp--~~~~l~t~s~dg~I 329 (545)
+.....|..|.+.|..+.|...|..|++|+.|..|.+||...++.+..+ .+|...|..-.|-| +..-+++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445678899999999999999999999999999999999988887766 57999999999988 45679999999999
Q ss_pred EEEECCCCCee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc----C---CeeEEEEeC
Q 009059 330 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----S---GATQMRFQP 400 (545)
Q Consensus 330 ~vwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~---~v~~l~~sp 400 (545)
++=.+...++. ...+..|.++|..++.-|+..+-|.+++.|+.+.-+|++.+.....+... . ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99877654432 34566799999999999999999999999999999999987655444321 1 356788888
Q ss_pred CCC-EEEEEECCCeEEEEECCCCEE------EEEecC------CCCCEEEEEEcCCC-CEEEEEeCCcEEEEEcCCCCC-
Q 009059 401 RLG-RILAAAIENYISILDVETQVC------RLKLQG------HKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK- 465 (545)
Q Consensus 401 ~~~-~l~~~~~dg~I~i~d~~~~~~------~~~~~~------h~~~I~~l~~sp~g-~~l~s~sdg~I~vwd~~~~~~- 465 (545)
... .+++++.|-.+++||.+.-.. +..+.. ..-.|+|++|+.++ .+|++-.|-.|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 655 678888999999999875321 233322 23479999999665 566666688999995432211
Q ss_pred --------cceEEE-EeeCCCc--eEEEE-EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEE
Q 009059 466 --------GECIHE-LSCTGNK--FHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 466 --------~~~i~~-~~~~~~~--v~~~~-~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~l 532 (545)
...+.. +++|.+. |..+- |-|...|+++|+.-|.|.||+-++++.+ .+.+....|+||.=+|--.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 012222 5666543 55554 5788899999999999999999999988 445555599999999999999
Q ss_pred EEEeCCCcEEEc
Q 009059 533 ASASHDKCVKIW 544 (545)
Q Consensus 533 as~s~Dg~I~iW 544 (545)
|+.|-|..||||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=162.13 Aligned_cols=228 Identities=19% Similarity=0.317 Sum_probs=174.0
Q ss_pred EEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCccEEEEEEcCC-CCEEEEEe
Q 009059 254 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSS 324 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s 324 (545)
...-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +++..+.+|...|--|+|+|. .+.|++++
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 34556789999999999999 5668999999999999998643 456788999999999999994 56899999
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--eeEEEEeCCC
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRL 402 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~ 402 (545)
.|.+|.+|++.++.. +.++. |.+.|+++.|+.+|. ++++.+.|..|+|||.++++.+..-..+.+ ...+.|..++
T Consensus 152 ~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999999999886 55555 999999999999975 566888999999999999999887754443 4567788887
Q ss_pred CEEEEEE----CCCeEEEEECCCCEE---EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC-cceEEEE
Q 009059 403 GRILAAA----IENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK-GECIHEL 472 (545)
Q Consensus 403 ~~l~~~~----~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~-~~~i~~~ 472 (545)
. +++.+ ++..+.+||..+.+. ...+. ....|.---|.++..+|+.++ |+.|+.|.+..... ...+.++
T Consensus 229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f 306 (472)
T KOG0303|consen 229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF 306 (472)
T ss_pred c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc
Confidence 7 55544 367899999876432 33333 345666667888888887777 88999999987532 1122222
Q ss_pred eeCCCceEEEEEcCC
Q 009059 473 SCTGNKFHSCVFHPT 487 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~ 487 (545)
. ...+-..+.|-|.
T Consensus 307 ~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 307 S-SKEPQRGMGFMPK 320 (472)
T ss_pred c-cCCcccccccccc
Confidence 2 2334455555554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=158.26 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=184.0
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~ 335 (545)
.|....+.|+|+-| ..+||.||.-|.|+|.|+.+++....+.+|...|+.|.|.|+ .+++++++.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888998774 347999999999999999999999999999999999999996 4689999999999999999
Q ss_pred CCCeeeeE---eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------------------------
Q 009059 336 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 388 (545)
Q Consensus 336 ~~~~~~~~---~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------------------------ 388 (545)
+..+ +.. +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....++
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8764 554 457999999999999987 55599999999999998433211110
Q ss_pred -----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCE-------------EEEEecCCCCCEEEEE--EcCCCCEE
Q 009059 389 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQV-------------CRLKLQGHKNQVHSVC--WNTSGEYL 447 (545)
Q Consensus 389 -----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~-------------~~~~~~~h~~~I~~l~--~sp~g~~l 447 (545)
|...|.|+.|- |+++++-+.++.|..|... -++ .+..+.-....|.-+. |.|-++.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 11113333333 3677888889999999872 111 1223333444555554 56678899
Q ss_pred EEEe-CCcEEEEEcCCCCCcce-EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 448 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~~~~-i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|.|. .|.|.+||++......+ ..........|...+|+.++..|+....|+.|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 88999999998755322 22223345779999999999999999999999999853
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-17 Score=144.12 Aligned_cols=268 Identities=15% Similarity=0.179 Sum_probs=194.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------C-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTES---------F-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~---------~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.|.+-+|+|.+++|+.|..+|.|.+..+.+ + ..+...++|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 366778999999999999999999998753 2 33455689999999999983 4677764 699999987
Q ss_pred CCCCeee-------eEeccC-----cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCC
Q 009059 335 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 401 (545)
Q Consensus 335 ~~~~~~~-------~~~~~h-----~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~ 401 (545)
....... .....| --.|+++-..|..+.++..| .|+.++-||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432211 011112 24688999999887777555 699999999999999999986655 677777566
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEecCCC----------CCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----------~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
...+++|+.||++++||.++++++..+...+ ..|.+++ -+..++++|+...+.+|.++.. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 6889999999999999999999888775421 2455555 4567898888889999999987 44444
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEc
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 544 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iW 544 (545)
+. -...+..+.|..+. +++++..+.|.-|.+..--...........++..|+..- ++|-.++....+.|+
T Consensus 243 fp-ipa~v~~v~F~~d~--vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDDC--VLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecce--EEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 43 35667888887654 777777778988887654333443333344555554332 456666777777765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=148.80 Aligned_cols=240 Identities=19% Similarity=0.332 Sum_probs=177.6
Q ss_pred cCCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCC--CeE--EEEe-----ccCCccEEEEEEcC-CCCEEEEEe
Q 009059 260 PASTSKVESCHFSPDG-----KLLATGGHDKKAVLWCTES--FTV--KSTL-----EEHTQWITDVRFSP-SLSRLATSS 324 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg-----~~latg~~dg~I~lwd~~~--~~~--~~~l-----~~h~~~V~~l~~sp-~~~~l~t~s 324 (545)
..|.-+++.+-|.|+. ++|||++ ..++||.+.. .+. ...+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688999999999976 3677765 4899998863 221 1112 34678899999987 678999999
Q ss_pred CCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Eec---cCCeeEEEE
Q 009059 325 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKC---QSGATQMRF 398 (545)
Q Consensus 325 ~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~---~~~v~~l~~ 398 (545)
-|-++.|||++++. .....+..|..+|..++|...+..+|++++.||.||+||++..+--.. ++. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 235677889999999999998899999999999999999987543322 222 334677888
Q ss_pred eCCCCE-EEEEEC-CCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC---cceEE
Q 009059 399 QPRLGR-ILAAAI-ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---GECIH 470 (545)
Q Consensus 399 sp~~~~-l~~~~~-dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~---~~~i~ 470 (545)
++.... +++... ...|.|.|++.. .++..+.+|.+.|+.|+|.|.. ..|++++ |..+.+||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 875544 444444 468999999974 6788999999999999999965 6788888 66999999976422 11222
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
.+. .+..|+.+.|++...--++...++.+.+
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 233 5678999999975543344444444444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=170.96 Aligned_cols=236 Identities=19% Similarity=0.211 Sum_probs=177.7
Q ss_pred cccceeeeeec-----CCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----------CeEEEEe
Q 009059 237 PRDRVGRSAEV-----GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTL 301 (545)
Q Consensus 237 ~~d~~~~~~~~-----~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~----------~~~~~~l 301 (545)
..+.++++|.+ .....+..+-+|++|.++|.|+++.++++.+++|+.||+|+.|++.. ......+
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l 392 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL 392 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence 34667777776 33467888999999999999999999999999999999999996541 1334567
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~ 381 (545)
.||.+.|+.++++.....|++++.||++++|+......+........+...++++-.....+.++...-+.--++++...
T Consensus 393 ~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 393 LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred eccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 89999999999999989999999999999999876543112112222345566665433222223222333334444444
Q ss_pred ceeeEEecc--------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 382 SCAGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 382 ~~~~~~~~~--------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
..+..+... ..+..+.++|.....+.+..++.|+++|..++..++....|...++++++.|+|-+|++++ |
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d 552 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD 552 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCC
Confidence 444444321 2367788999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcEEEEEcCCCCCcceEEEEeeC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.+++|.+... .|+.....|
T Consensus 553 ~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 553 GSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred ceeehhhccch---heeeccccc
Confidence 99999998665 565555444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-16 Score=147.41 Aligned_cols=255 Identities=20% Similarity=0.361 Sum_probs=185.4
Q ss_pred CceecccccCCccccccCCCCCCcccceeeeee-cCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 009059 214 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE-VGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 290 (545)
Q Consensus 214 ~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lw 290 (545)
..++.+.++|..-+... ..+.|..+++|| ......+..-...+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 13 ~DlihdVs~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cceeeeeeecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 34444555543333222 334567788888 444467778888999999999999976 68999999999999999
Q ss_pred EcC---------CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeee-------------Eecc
Q 009059 291 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR-------------TFTG 346 (545)
Q Consensus 291 d~~---------~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~-------------~~~~ 346 (545)
.-. ......++......|++|.|.|. |-.||+++.||++|||+..+... +. ....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhhhhhhhccCCccc
Confidence 751 12344567778889999999994 77899999999999999865432 11 1124
Q ss_pred CcccEEEEEEeCCC--CcEEEEEcCC-----CcEEEEECCCC--ceeeE--E-eccCCeeEEEEeCCCC----EEEEEEC
Q 009059 347 HSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGV--F-KCQSGATQMRFQPRLG----RILAAAI 410 (545)
Q Consensus 347 h~~~V~~l~~~p~~--~~ll~s~s~d-----g~I~lwd~~~~--~~~~~--~-~~~~~v~~l~~sp~~~----~l~~~~~ 410 (545)
+..+..|+.|+|.. ..+|+.|+.+ +.++||..... +.... + .+..+|+.++|.|+-+ .|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 66788899998752 4467677654 37888876543 22222 2 3456799999999744 4777888
Q ss_pred CCeEEEEECCCC--------------------EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 411 ENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 411 dg~I~i~d~~~~--------------------~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||.|++|...-.....|.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence 99 999998731 23445778999999999999999999988 999999987666555666
Q ss_pred EEEee
Q 009059 470 HELSC 474 (545)
Q Consensus 470 ~~~~~ 474 (545)
..++.
T Consensus 327 sv~~~ 331 (361)
T KOG2445|consen 327 SVLKA 331 (361)
T ss_pred eEEec
Confidence 66554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-17 Score=167.65 Aligned_cols=258 Identities=18% Similarity=0.235 Sum_probs=187.9
Q ss_pred CcEEEEEcCCC-eEEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeee-----eEeccCcccEEEEEEe
Q 009059 285 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFH 357 (545)
Q Consensus 285 g~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~~ 357 (545)
+.+.||+++.. .+...+. -...|+|++|+| +..+|+.|..+|.|.+||+....... .....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999865 3344443 567899999999 56788889999999999998765421 2334688999999997
Q ss_pred CCCCc-EEEEEcCCCcEEEEECCCCce-e-----eEE-------eccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCC
Q 009059 358 PSKED-LLCSCDNNSEIRYWSINNGSC-A-----GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 358 p~~~~-ll~s~s~dg~I~lwd~~~~~~-~-----~~~-------~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.+... =+++++.||.|..|+++.-.. . ... .....++.+.|.+. -..+++|+.+|.|+.-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65433 244888899999998875332 1 111 12235788999884 456888888999888443322
Q ss_pred ---E-----EEEEecCCCCCEEEEEEcCCCC-EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE-EE
Q 009059 423 ---V-----CRLKLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL 492 (545)
Q Consensus 423 ---~-----~~~~~~~h~~~I~~l~~sp~g~-~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~-l~ 492 (545)
. ....+..|.++|+++.++|-+. ++.+++|.+++||...... ..+..+..+...+++++|||.... ++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 1234556889999999999775 4445559999999976221 455566667777999999998865 55
Q ss_pred EEEcCCeEEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++..+|.|.+||+...... ....+....+.+.|++.|+.|++|+..|.+++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 5666999999999655433 3334466777888999999999999999999985
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=155.54 Aligned_cols=265 Identities=17% Similarity=0.197 Sum_probs=193.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCC-ccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL--EEHT-QWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~-~~V~~l~~ 313 (545)
...+|++++.+|..+++ +++|...+..+.|.. .+..+.+|+.||+|++||++.......+ ..|. .+..|++.
T Consensus 49 ngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred CCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 45689999999876555 556666677777766 4668999999999999999986655443 4555 56777877
Q ss_pred cCCCCEEEEEeC----CCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----cee
Q 009059 314 SPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCA 384 (545)
Q Consensus 314 sp~~~~l~t~s~----dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~ 384 (545)
..++..+++|.. |-.|.+||++..+..+. ....|.+.|+++.|+|....+|++|+.||.|.+||++.. ..+
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 777888888854 67899999998776444 455799999999999999999999999999999999754 245
Q ss_pred eEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCC------------CCEEEEEEcCCCCEEEE-E
Q 009059 385 GVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------------NQVHSVCWNTSGEYLAS-V 450 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~I~~l~~sp~g~~l~s-~ 450 (545)
.++.+...|.++.|..++ +++++-+......+|+++.+.+...+.... ..+.......+..+++. +
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 566777789999999874 469999999999999999887655443221 11111111123333333 3
Q ss_pred e-CCcEEEEEc---CCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 451 S-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 451 s-dg~I~vwd~---~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
. -+...++-+ .++.....+..+.+ |..-|+++.|...+..+++||.||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 3 445555443 33433444555555 55668889999999999999999999999853
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-17 Score=150.70 Aligned_cols=233 Identities=17% Similarity=0.293 Sum_probs=174.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-----------eeEec-cCcccEEEEEEe-------CCCCcEEEEEc
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-----------LRTFT-GHSTTVMSLDFH-------PSKEDLLCSCD 368 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-----------~~~~~-~h~~~V~~l~~~-------p~~~~ll~s~s 368 (545)
...+.|+|||..|++-+.|..+++|++...... ...+. .....|+..+|. |+ ..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 456899999999999999999999998632110 00111 123567788885 44 56788899
Q ss_pred CCCcEEEEECCCCceeeEEecc------CCeeEEEEeCCCCEEEEEECCCeEEEEEC-CCCEE--EEEe-----cCCCCC
Q 009059 369 NNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDV-ETQVC--RLKL-----QGHKNQ 434 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~-~~~~~--~~~~-----~~h~~~ 434 (545)
.+.-|++||.-+|+....+..- ....+++|+|+|.+|++| ....|++||+ +.|.. +... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999999999887766532 236789999998877665 5689999999 55432 1111 123667
Q ss_pred EEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE
Q 009059 435 VHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL 511 (545)
Q Consensus 435 I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~ 511 (545)
|.|++|+|.. ..+++++ ...+-||.-... ..+..+-+|.+.|+.+.|.++|+.|++|+.. ..|..||++..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 8999999966 4888888 567777766554 6677777999999999999999999999874 49999999876544
Q ss_pred --EeccCCC-CeeE--EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 --TLSAHDK-LVSS--LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 --~~~~h~~-~V~~--l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+..|.. .-.. ....|++++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 5666654 2223 45568899999999999999997
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-17 Score=171.64 Aligned_cols=289 Identities=18% Similarity=0.218 Sum_probs=207.1
Q ss_pred EEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCCEEEEEeC
Q 009059 254 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~ 325 (545)
..+..+..|...|..++.+++. .++++|+.||+|++|+... .+...++.-....+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 3577888999999999988855 8999999999999999853 1223334445678999999999999999999
Q ss_pred CCeEEEEECCCCCee------eeEeccC-cccE-EEEEEeCCCCc-EEEEEcCCCcEEEEECCCCceeeEEec---cCCe
Q 009059 326 DRTVRVWDTENPDYS------LRTFTGH-STTV-MSLDFHPSKED-LLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 393 (545)
Q Consensus 326 dg~I~vwd~~~~~~~------~~~~~~h-~~~V-~~l~~~p~~~~-ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v 393 (545)
||.|++.+++..... .+....+ .+.+ ...+|...... +++.+...+.|..||++.......++. ++-|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999998752111 1111112 2233 33344333333 666777788999999998776665543 4569
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCC---CCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~---g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|- ..+.++++ .+.|.+|++.++.
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~-- 1276 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL-- 1276 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--
Confidence 999999999999999999999999999988887665 24567888877663 24555544 4589999998873
Q ss_pred ceEEEEeeC-------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----------------
Q 009059 467 ECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---------------- 511 (545)
Q Consensus 467 ~~i~~~~~~-------------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---------------- 511 (545)
+-..+... .-....+.+...+.++++|+.|..|+.||....+..
T Consensus 1277 -~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~ 1355 (1431)
T KOG1240|consen 1277 -RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSE 1355 (1431)
T ss_pred -ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccch
Confidence 22222211 112334555556678999999999999997432110
Q ss_pred -----------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 512 -----------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 512 -----------------------------------------~~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
.-..|..+|++|++.... .+|++++.||.|+||+
T Consensus 1356 s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1356 SYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011366778888876544 5899999999999996
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=141.52 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=167.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
.|..-+|+|.+++|++|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 355668999999999999999999998863 2334566789999999999993 3554776 69999998
Q ss_pred CCCCce------eeEEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 378 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 378 ~~~~~~------~~~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
.+.... +.... .-..|+.+-..|..+.++.++.|+.++.||+++|+....+++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11111 1124788999999899999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 512 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 512 (545)
...+.+|+ ||++|+||+++. +++..+... ...|.+++. +..+|++|+ ...+.+|.++..++..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~---k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQ---KHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred CcceeecCCCccEEEEecccc---ceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceE
Confidence 44555666 999999999998 444443321 223444443 455555554 4579999999999887
Q ss_pred eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.....+++..+.|.. ..+++++..+.|.-|
T Consensus 242 vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFPIPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEecccceeEeeeec--ceEEEeccccceeee
Confidence 777778888888863 456677655555544
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-16 Score=162.64 Aligned_cols=282 Identities=17% Similarity=0.279 Sum_probs=210.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--C--eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
..|.-.++|.++||+++++|+|..||.|.+|.--. . .....+.=|...|++++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996322 1 2235566688999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec------------cCCeeEEEEeCCCC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG 403 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~------------~~~v~~l~~sp~~~ 403 (545)
+++ .+.+..-.++|..+.++|+++.+. ....|..|.+....+.+....+.+ .+-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 877 466677788999999999986555 555599999988765544433322 12256789999878
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecC-----CC------CCEEEEEEcCCCCEEEEEe---------CC--cEEEEEcC
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQG-----HK------NQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 461 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~------~~I~~l~~sp~g~~l~s~s---------dg--~I~vwd~~ 461 (545)
.++..+..|.|.+||+-+.+.+..+.. +. -.++.++.+-.|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999988766655431 22 2567778888899998864 33 68899876
Q ss_pred CCCCcceEE--EEeeCCCceEEEEEcC-CCC-EEEEEEcCCeEEEEeCCCCe----------EE-EeccCCCCeeEEEEe
Q 009059 462 SGSKGECIH--ELSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 462 ~~~~~~~i~--~~~~~~~~v~~~~~sp-~~~-~l~~~~~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~s 526 (545)
.......+. ....|+..+...++.+ ... .+++++.||.++||-+...+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 654323322 2345666665555543 333 68999999999999873322 22 112478999999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 009059 527 TVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 527 pd~~~las~s~Dg~I~iWd 545 (545)
.||.+ ++.+.|++|.|||
T Consensus 519 ~dGsl-la~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSL-LAVSFDDTITIWD 536 (792)
T ss_pred CCCcE-EEEecCCEEEEec
Confidence 99954 5566788999997
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-17 Score=168.31 Aligned_cols=264 Identities=17% Similarity=0.200 Sum_probs=197.8
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE--EEE----eccCCccEEEEEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KST----LEEHTQWITDVRF 313 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~--~~~----l~~h~~~V~~l~~ 313 (545)
..-+|+........ ..+ .-...|+|++|+| +..+||.|.++|.|.+||+..+.. ... ...|..+|+.+.|
T Consensus 223 ~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 56778776652222 122 2356799999999 677888999999999999987665 222 2468999999999
Q ss_pred cCCC--CEEEEEeCCCeEEEEECCCCCeeeeE-----ec------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 314 SPSL--SRLATSSADRTVRVWDTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 314 sp~~--~~l~t~s~dg~I~vwd~~~~~~~~~~-----~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
..+. .-|++++.||.|..|+++.-..+... .. .-...+++++|.+.....++.|+++|.|..-+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7643 45999999999999988753332211 11 12346899999998888899999999998744332
Q ss_pred Cce--------e-eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCC-EEEE
Q 009059 381 GSC--------A-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLAS 449 (545)
Q Consensus 381 ~~~--------~-~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~-~l~s 449 (545)
.+. . ....+.+.+..+.++|-+..++..+.|.+++||... ...++..+..+...|++++|||... .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 211 1 122355779999999988887777779999999998 7778888888888899999999874 4555
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+. ||.|.+||+..... ..+............+.|++.++.|++|...|++++|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 55 89999999987544 344444444666777888999999999999999999999653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-15 Score=141.39 Aligned_cols=232 Identities=17% Similarity=0.252 Sum_probs=175.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~ 341 (545)
..+..+.|..|...|..|+.|| .++|+.+..............|..+-|+. .++|..+.+ +.++++++..... +
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~-I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT-I 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-E
Confidence 4567778999999999998886 57888776555333333344566666764 466665554 3589999886554 4
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc----CCeeEEEEeCCCCEEEEEE--CCCeEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAA--IENYIS 415 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~~v~~l~~sp~~~~l~~~~--~dg~I~ 415 (545)
..+. ...+|.++.++.+ .++ ++- ...|+|||+++.+.+.++... .++..+.+++.+.+++.-+ ..|.|.
T Consensus 82 Ce~~-fpt~IL~VrmNr~--RLv-V~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK--RLV-VCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEe-cCCceEEEEEccc--eEE-EEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 4333 3467999999854 444 444 344999999999999887643 3355566666666777644 379999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEE
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSL 491 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l 491 (545)
+||+.+.+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.++... ...|.+++|+|++.+|
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 999999999999999999999999999999999999 55 7999999888 566666533 3458899999999999
Q ss_pred EEEEcCCeEEEEeCCC
Q 009059 492 LVIGCYETLELWNMTE 507 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~ 507 (545)
.+.+..++|+||.++.
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-17 Score=162.50 Aligned_cols=251 Identities=16% Similarity=0.210 Sum_probs=190.9
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l 320 (545)
.+-++|.+.|. .++++++|.+.|+|++|+.||+.+|+|+.|+.|.||+..- +-+.. ..|.+.|.|+.|+|-...|
T Consensus 34 rlliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~L 108 (1081)
T KOG1538|consen 34 RLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQL 108 (1081)
T ss_pred EEEEEeCCCcc---cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHh
Confidence 35567777775 4678999999999999999999999999999999998543 22222 2599999999999998999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---ccCCeeEEE
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMR 397 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~~~~v~~l~ 397 (545)
++++-. ..-+|..+.... ...+ ....|.+++|..||. +++.|-.+|+|.+-+-...+.+..-. .+++|.+++
T Consensus 109 asCsLs-dFglWS~~qK~V--~K~k-ss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSV--SKHK-SSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSIC 183 (1081)
T ss_pred hhcchh-hccccChhhhhH--Hhhh-hheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEE
Confidence 998764 477898775432 2222 345788999999975 45588889999998765444443333 345699999
Q ss_pred EeCCCC-----EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 398 FQPRLG-----RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 398 ~sp~~~-----~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
|+|..+ .+++.....++.+|.+... .+-.-..-.-...|+.+.++|.|+..|+ |+.+.+|.-. + ..+.+
T Consensus 184 ~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGT 258 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGT 258 (1081)
T ss_pred ecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEee
Confidence 999643 4666777778887777543 2222222334567999999999999888 9999999743 2 55666
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.....+|+.+...|++.+++.|+.||+|..|++-
T Consensus 259 vg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 66678899999999999999999999999999874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=166.70 Aligned_cols=232 Identities=17% Similarity=0.126 Sum_probs=165.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCe-eeeEeccCcccEEEEEEeCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~ 359 (545)
+..|.+||..... ...+..|...+..++|+|||++|+.++.+ ..|.+||+.++.. .+..+.+ ....++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45667788889999999999999988754 3799999987653 2233333 3457899999
Q ss_pred CCcEEEEEcCCCcEE--EEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECC--CCEEEEEecCCCCC
Q 009059 360 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE--TQVCRLKLQGHKNQ 434 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~--lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~--~~~~~~~~~~h~~~ 434 (545)
+..++++.+.+|.+. +||+.++...........+....|+|++..++.++ .++...||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 988887777777654 55777666554444445578899999999877666 46777777654 3322 222 3433
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC---CCCeEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTL 511 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~---~~~~~~ 511 (545)
.++.|+|+|++|+..+...+.+||+.++.. .. +... .....+.|+|++++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGST---EV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 467899999999888855577799987632 11 1111 23356789999999999999887776654 444444
Q ss_pred EeccCCCCeeEEEEeCC
Q 009059 512 TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 512 ~~~~h~~~V~~l~~spd 528 (545)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788888999999984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.2e-17 Score=159.03 Aligned_cols=261 Identities=16% Similarity=0.247 Sum_probs=189.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 332 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~-sp-------~~~~l~t~s~dg~I~vw 332 (545)
-|...|.||.|+.+...+.+++ |..+.+|..-+......+.-....|....+ -+ ....|+.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 3666778999998877776665 555656543333333222222222211111 11 23478888999999998
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+-. ++ .-+....|.+.+.+-.|+|+|.-++ +.++||.|++|.-. |....++ .....|.|++|.|+.+.++.+ ..
T Consensus 91 ~k~-~r-VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g 165 (737)
T KOG1524|consen 91 NKS-AR-VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFC-QG 165 (737)
T ss_pred ccc-ch-hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEe-cC
Confidence 754 23 2567788999999999999998877 88899999999854 4433333 344679999999997776654 34
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+.+.|=.+.-...+...+.|.+-|.++.|++...++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ .
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~- 239 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K- 239 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-
Confidence 6677777777777788899999999999999999999999 77999999543 556677788999999999999 3
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
++..++.+++++ .....+.|..++||+||..++.|+..|.+.+
T Consensus 240 ~~~v~S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 240 DYLLWSYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ceeeeeeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 444444445542 1234577999999999999999999987653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=165.66 Aligned_cols=234 Identities=17% Similarity=0.168 Sum_probs=167.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeE--EEEeccCCccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~--~~~l~~h~~~V~~l~~ 313 (545)
+..+.+||..... .+.+..|...|.+.+|+|||+.||.++.+ ..|++||+.+++. +..+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 4667777765433 34566788899999999999999988654 3699999988754 3334444 346899
Q ss_pred cCCCCEEEEEe-CCCeEEEE--ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEec
Q 009059 314 SPSLSRLATSS-ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC 389 (545)
Q Consensus 314 sp~~~~l~t~s-~dg~I~vw--d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~ 389 (545)
+|||++|+.+. .+|.+.|| |+.++. ...+..+...+....|+|++..+++++..+|...+|++... .....+..
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~ 333 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG 333 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence 99999888764 68876665 555443 45666677788899999999888878777888888876432 22222222
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
.. ....|+|+++.+++++.++ +.+||+.++........+ ....+.|+|+|++|+.++ ++.+.+|++... ....
T Consensus 334 -~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~ 407 (429)
T PRK01742 334 -RG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRF 407 (429)
T ss_pred -CC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCc
Confidence 22 4578999999988887754 666999988654333222 335678999999999988 887777776431 1155
Q ss_pred EEEEeeCCCceEEEEEcCC
Q 009059 469 IHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~ 487 (545)
+..+..+...+...+|+|-
T Consensus 408 ~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred eEEccCCCCCCCCcccCCC
Confidence 6677777778888999885
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=142.95 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=179.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCc
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 382 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~ 382 (545)
...+..+.|+.+...|..|+.|| .++|..+.... ..........|..+-|+. .|++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999998 68888775443 111122233466666763 355454433 359999999999
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEe---CCcEE
Q 009059 383 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 456 (545)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I~~l~~sp~g~~l~s~s---dg~I~ 456 (545)
.+..+..+..|.++.++.+ +|+++-.+ .|+|||+++-+.++++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999998899999999874 45555444 499999999998887764 444566777777778998865 67999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-EeccC--CCCeeEEEEeCCCCEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 532 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h--~~~V~~l~~spd~~~l 532 (545)
+||+.+- ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+... ...|.+|+|+|++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999776 77888899999999999999999999999999 6899999999887 44422 3568899999999999
Q ss_pred EEEeCCCcEEEcC
Q 009059 533 ASASHDKCVKIWK 545 (545)
Q Consensus 533 as~s~Dg~I~iWd 545 (545)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-15 Score=139.53 Aligned_cols=271 Identities=15% Similarity=0.198 Sum_probs=197.4
Q ss_pred CCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg-~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+.|.-+.|..|..+++++ ..|+.|.+|++..-+-...+......+..++|+|||+ +|.+...|-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~- 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY- 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-
Confidence 456667777777665544 4577999999988777788888889999999999995 5566777999999999876542
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcC-----------------------------------CCcEEEEECCCCceeeE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 386 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------------------------------dg~I~lwd~~~~~~~~~ 386 (545)
.+.--+..+..++|+|+|....+..-. +..+.+||---.-.+..
T Consensus 128 -~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 128 -LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred -EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 233233456888999998654432211 22344555332223334
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE----------------------------------------
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---------------------------------------- 426 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~---------------------------------------- 426 (545)
+...-++..++|+|.+..+++|+.|+.++|.+--+.+...
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 4555678899999998999999999988876532221100
Q ss_pred --------------------Eec------CCCCCEEEEEEcCCCCEEEEEeCC---cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 427 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 427 --------------------~~~------~h~~~I~~l~~sp~g~~l~s~sdg---~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
.++ ...-.+.-++|++|..|+++-.|. .+-+||++..+ ++..-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 011 011246678999999999998865 79999997643 223333567
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++..+.|-.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777766666688999999999999999998853
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=141.47 Aligned_cols=277 Identities=15% Similarity=0.233 Sum_probs=192.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCe--
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
-.+..++|++.-.-+|++..|-.|++|+-.. +....++ .....|+|++|.|. ++.|+.|+..| |.+|.......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3477789998766788999999999999766 4444454 23567999999995 45677776554 99998753211
Q ss_pred -----------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEE
Q 009059 340 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 340 -----------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~ 407 (545)
.+....+| .+|+++.|.+||..++-+.-.|..|.+||..++.++... ...+++.-+.|+|++.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233455 689999999998877755567889999999999888766 45577889999999999999
Q ss_pred EECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc------------eEEEEe-
Q 009059 408 AAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS- 473 (545)
Q Consensus 408 ~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~------------~i~~~~- 473 (545)
++-|+..++|... +.....-.. -.+.|...+|+|+|++|.....+.-++|.+.-..... .+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999544 444333333 3459999999999999888887766666654321100 111111
Q ss_pred --------eCCCceEEEEEcCCCCEEEEEEcCC--------eEEEEeCCCCeEEEec--c--CCCCeeEEEEeC---CCC
Q 009059 474 --------CTGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 530 (545)
Q Consensus 474 --------~~~~~v~~~~~sp~~~~l~~~~~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---d~~ 530 (545)
...+++.+++|.|.|.+|++.-..+ .|.+||....-.+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1146789999999999999987655 4667777665554322 1 112244556655 345
Q ss_pred EEEEEeCCCcEEEc
Q 009059 531 MVASASHDKCVKIW 544 (545)
Q Consensus 531 ~las~s~Dg~I~iW 544 (545)
+|..+=..|.|.-|
T Consensus 415 lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRY 428 (445)
T ss_pred EEEEEeccCceEee
Confidence 56555555665433
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=144.98 Aligned_cols=209 Identities=21% Similarity=0.375 Sum_probs=162.5
Q ss_pred eeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-EEEe-----ccCCccEEEEEEcC--CCCEEEE
Q 009059 252 TFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLAT 322 (545)
Q Consensus 252 ~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~-~~~l-----~~h~~~V~~l~~sp--~~~~l~t 322 (545)
++..+..|. .|-+.|.|+.|.|+++.||+-. |..|.+|+++.... ...+ .+|....++-+|+| +++.+++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 345556665 5677999999999999999876 88999999987665 3333 23567788889998 6778887
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCC-eeEEEEeC
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQP 400 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~-v~~l~~sp 400 (545)
. .|+++..||+++.+.....-..|...|..+.|+|+...++++|+.||.|++||.+. ..++..+..+.. +.++.|+|
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 6 58899999999877656666788889999999999999999999999999999985 345555554443 88999999
Q ss_pred CC-CEEEEEECCCeEEEEECCCCE-----------------------------EEEEecCCCCCEEEEEEcCCCCEEE-E
Q 009059 401 RL-GRILAAAIENYISILDVETQV-----------------------------CRLKLQGHKNQVHSVCWNTSGEYLA-S 449 (545)
Q Consensus 401 ~~-~~l~~~~~dg~I~i~d~~~~~-----------------------------~~~~~~~h~~~I~~l~~sp~g~~l~-s 449 (545)
.. ..+++++.|..|.+|....-. .+.++..|.+.|++++|+.-..+++ +
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 54 556788889999998653210 1335667999999999998776555 4
Q ss_pred Ee-CCcEEEEEcCC
Q 009059 450 VS-DELVRVWSIGS 462 (545)
Q Consensus 450 ~s-dg~I~vwd~~~ 462 (545)
-+ ||.+.|=.+..
T Consensus 349 LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 349 LSYDGRVIISSVPR 362 (370)
T ss_pred eccCceEEeecCCh
Confidence 45 99988877643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=157.10 Aligned_cols=272 Identities=20% Similarity=0.230 Sum_probs=196.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~---~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+.. ++++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt~ 98 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKTF 98 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEEE
Confidence 357899999998876 5699999999999999999999999999998853 4788999999999999998764 6666
Q ss_pred ccCcccEEEEEEeCC---CCcEEEEEcCCC------------cEEEEECCCCce--eeEEeccCCeeEEEEeCCCCEEEE
Q 009059 345 TGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~---~~~ll~s~s~dg------------~I~lwd~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
..+ .++..+.+.|. ....+.....|. .++-+.+.+... ............+.+++. +.+..
T Consensus 99 ~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~~ 176 (792)
T KOG1963|consen 99 DNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFKG 176 (792)
T ss_pred ecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEEE
Confidence 533 33444443221 111121222121 111111111000 000011111355666666 45555
Q ss_pred EECCCeEEEEECCCCEEEE----EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC-CCCcceEEEEeeCCCceEE
Q 009059 408 AAIENYISILDVETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~----~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~-~~~~~~i~~~~~~~~~v~~ 481 (545)
...+..+++|...++.... .-..|...++|.+++|++++++++. ||.|.+|.--. .........+.-|...|.+
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 6666778888887754111 1123666799999999999999999 99999997443 2233455677789999999
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
++|+++|.+|++||..+.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|+.|.+
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 99999999999999999999999999997777788899999999999999999999998876
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=159.72 Aligned_cols=262 Identities=16% Similarity=0.266 Sum_probs=210.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
-+.+.|+.+|+.|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++ ....+.|||-.. . .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-t-ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-T-ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC-c-EEeehh
Confidence 45689999999999999999999999999999988863 4568999999888888887 566899999763 3 366666
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.| ..|..+.|.|- .+||++++..|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55 47999999998 588889999999999999999999877654 4577788899888888899999999999999999
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
+..+..|.++|.+|++.++|+|+++.+ |..++|||++... .++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999999999999999999999999999 9999999999873 4444443 4556777888777 6777777789999
Q ss_pred e-CCCCe---EEEeccC--CCCeeEEEEeCCCCEEEEEeCCC
Q 009059 504 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 504 d-~~~~~---~~~~~~h--~~~V~~l~~spd~~~las~s~Dg 539 (545)
. .-.+. ......| .+.|..+.|.|-...|-.|..-|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122233 35899999999776666655444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=153.50 Aligned_cols=235 Identities=13% Similarity=0.105 Sum_probs=171.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++. ..+....+.+..+.|+|+|+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 37889998765443 34446678999999999999987643 45799999987653 33333334456789999999
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+.....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 5999999988776655555567889999999988877764 3 5666688776543 3333444567
Q ss_pred EEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
...|+|+|++|+... ++ .|.+||+.++.. ..+.. ........|+|||++|+.++.++ .+++++++...
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999988766 32 688999987632 22221 12334678999999999999876 47888997777
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 009059 510 TLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd 528 (545)
...+..|.+.+...+|+|-
T Consensus 410 ~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 410 KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eEECccCCCCcCCcccCCC
Confidence 7778788889999999873
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=142.31 Aligned_cols=238 Identities=19% Similarity=0.247 Sum_probs=175.5
Q ss_pred ccEEEEEEcC---CCCEEEEEeC----CCeEEEEECCCC--CeeeeEeccCcccEEEEEEeCCCC----cEEEEEcCCCc
Q 009059 306 QWITDVRFSP---SLSRLATSSA----DRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSKE----DLLCSCDNNSE 372 (545)
Q Consensus 306 ~~V~~l~~sp---~~~~l~t~s~----dg~I~vwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~----~ll~s~s~dg~ 372 (545)
-.+.++.|+. ...+|+.|+. .+.|.|..+... +.....-..|.-+++.+.|.|+.. .+||++ +-.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCe
Confidence 4577778873 2447888765 456666655433 222222246889999999999863 467665 447
Q ss_pred EEEEECCCCc--ee--e------EEeccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCE---EEEEecCCCCCEEEE
Q 009059 373 IRYWSINNGS--CA--G------VFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSV 438 (545)
Q Consensus 373 I~lwd~~~~~--~~--~------~~~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~---~~~~~~~h~~~I~~l 438 (545)
+|+|.+...+ .. . .-.+..+++++.|+. +-+++.+++-|-+..|||++++. ....+-.|...|..|
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 9999987422 11 1 112335688888886 34566677779999999999863 466778899999999
Q ss_pred EEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCC-eEEEEeCCCCeEE--E
Q 009059 439 CWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE-TLELWNMTENKTL--T 512 (545)
Q Consensus 439 ~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg-~I~iwd~~~~~~~--~ 512 (545)
+|...+ ..+++.+ ||.||+||++.......+++-.....+...++|.+.. +++++-..|. .|.|.|++..... .
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999866 4666666 9999999999876666666655556788899998865 5566666665 8999999865433 8
Q ss_pred eccCCCCeeEEEEeCCC-CEEEEEeCCCcEEEcC
Q 009059 513 LSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ~~~h~~~V~~l~~spd~-~~las~s~Dg~I~iWd 545 (545)
+.+|.+.|++|+|.|.. ..|+|+|+|..+.|||
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 88999999999999976 5899999999999997
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=140.52 Aligned_cols=224 Identities=16% Similarity=0.199 Sum_probs=171.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
--..+|+|.+|++|+..+|++-....|.||..... +...++..|...|++|.|+|..+.|++|+.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 34578999999999999999999999999987654 567889999999999999999999999999999999998433
Q ss_pred -Ce-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-----EeccCCeeEEEEeCCCCEEEEEEC
Q 009059 338 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 338 -~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-----~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
+. +...+..+...++++.|+|.+ +.|++|+....|.+|-++...--.. ......|+++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 233556688999999999995 5666898888999988775443211 223467899999999888888999
Q ss_pred CCeEEEEECC-----C-------------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 411 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 411 dg~I~i~d~~-----~-------------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
|+..+||..- + |..+.++....+.|..+.|+|+|..|+-.+ |..+.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 9999998641 1 122333334567899999999999999888 99999999776531 2333
Q ss_pred EeeCCCceEEEEEcCC
Q 009059 472 LSCTGNKFHSCVFHPT 487 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~ 487 (545)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3333355566666443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=150.74 Aligned_cols=194 Identities=23% Similarity=0.258 Sum_probs=154.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-
Q 009059 267 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 345 (545)
Q Consensus 267 ~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~- 345 (545)
.+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+||++.|++.+.| ..+||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 679999999999999999999999999888888888999999999999999999999999 899999998743 43333
Q ss_pred -cCcccEEEEEEeCCC---C-cEEEEEcCCCcEEEEECCCCc------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 346 -GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGS------CAGVFKCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 346 -~h~~~V~~l~~~p~~---~-~ll~s~s~dg~I~lwd~~~~~------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
.-......+.|..++ . .+++.....+.|+.||+.... ....+.....+.+++.+.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345567776654 2 233333455667777764322 12223344679999999999999999999999
Q ss_pred EEEECCCCEEEEEe-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 415 SILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 415 ~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
.|++..+-+.++.. +.|...|+.+.|+|+.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999988777655 45999999999999999999987 77888877654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-14 Score=142.59 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=191.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+.+.|..+..... .+......-..+.|+|||+++++++.||.|.++|+.+++.+.+++.... ..++++++||+
T Consensus 15 ~~~v~viD~~t~~~~~---~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVA---RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEE---EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEE---EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCC
Confidence 3456667766655444 4444333334578999999999999999999999999999999876544 67899999999
Q ss_pred EEEEEe-CCCeEEEEECCCCCeeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee--eEEe
Q 009059 319 RLATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK 388 (545)
Q Consensus 319 ~l~t~s-~dg~I~vwd~~~~~~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~ 388 (545)
+++++. ..+.+.++|.++.+. ++.+.. ....+.++..+|....++++.-+.+.|.+.|......+ ..+.
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~ 169 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK 169 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred EEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence 998775 589999999998764 554432 23467788888887767766666788999898765433 3455
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC----CCCCEEEEE-------Ec--CCCCEE-EEEeCC
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDE 453 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~-------~s--p~g~~l-~s~sdg 453 (545)
.........|+|++.+++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+... ...+.+
T Consensus 170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence 5566889999999998887654 78999999999988776532 334444332 21 112222 222244
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE---E-cCCeEEEEeCCCCeEE-Eecc-CCCCeeEEEEeC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTL-TLSA-HDKLVSSLAAST 527 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~---~-~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~sp 527 (545)
.+.+||..+. +.+.++...+.. .-+..||+++++++. + ..+.|.++|.++.+.. .+.. -...+..+.|++
T Consensus 250 ~v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 250 PVSVHDDYAW---KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp TTT-STTTBT---SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred ccccchhhcC---eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 5556666554 778888877776 778889999999998 3 3469999999999876 3322 223589999999
Q ss_pred CCCEEEEEeCC--CcEEEcC
Q 009059 528 VNGMVASASHD--KCVKIWK 545 (545)
Q Consensus 528 d~~~las~s~D--g~I~iWd 545 (545)
+|+.+..+..+ +.|.|||
T Consensus 326 dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEE
Confidence 99966655544 3688886
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-15 Score=147.32 Aligned_cols=276 Identities=14% Similarity=0.162 Sum_probs=202.4
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.|...-+.|..+|||+| ||+|.+--.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+...-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 46677888999999998 56777888999999987766644433445566666666766677777788887654432111
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
.++ -...-..++++.-...+++.| ....|+-++++.|+.+..+... +.++++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 122344566654444566444 4667999999999999988876 6689999999989999999999999999
Q ss_pred CCCCEEEEEecC------CCC-----CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 419 VETQVCRLKLQG------HKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 419 ~~~~~~~~~~~~------h~~-----~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
.++...+..+.. |.+ .|+++.|+.+|-.+++|. +|.|.|||+++... .+..-....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 998766555432 323 499999999999999999 99999999998742 2222233456788888876
Q ss_pred CCCE-EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 487 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 487 ~~~~-l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.. -++......++|||-.+++..........++.+++-|++.++.+|-.++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 6332 33334445899999999999966666677999999999999999988876654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-15 Score=153.07 Aligned_cols=234 Identities=16% Similarity=0.093 Sum_probs=168.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|.+||+.++.. ..+..+.+...++.|+|+++
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998654 344555677789999999999999988743 4699999987653 33344455566889999999
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+| .|++||+.+++...............|+|++..++.++. +| .|+++|+.+++... +..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8887776665 599999998876554443344567899999998887765 44 47888887765433 222334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
.++|+|+|++|+... + + .|.+||+.++.. . .+. +........|+|++++|+..+.++ .|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 3 2 699999977632 1 222 222345679999999888877643 78899997766
Q ss_pred EEEeccCCCCeeEEEEeC
Q 009059 510 TLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~sp 527 (545)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888886
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-14 Score=149.52 Aligned_cols=234 Identities=13% Similarity=0.156 Sum_probs=169.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.+. .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+....|+|+|+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 4788889755 444556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred cEEEEEcCCCc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.++. |++||+.++................|+|++..++..+. + ..|+++|+.++.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88878776665 88889988876554444444677899999998887764 3 368899988765443 333455667
Q ss_pred EEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------CeEEEEeCC
Q 009059 437 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 506 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~I~iwd~~ 506 (545)
...|+|+|++|+... + + .|.+||+..+. ...+. ....+....|+|+|+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888875542 12222 22346778999999998876653 268888998
Q ss_pred CCeEEEeccCCCCeeEEEEeCC
Q 009059 507 ENKTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~spd 528 (545)
++....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3455777788763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=157.17 Aligned_cols=268 Identities=15% Similarity=0.197 Sum_probs=192.1
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcC-----CCeEEEEecc-------CC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HT 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~-----~~~~~~~l~~-------h~ 305 (545)
..+++||+.++..+..+..-..-...|+.+.+-. |..+|++|+.||.|+||+-- ..+++..+.+ ..
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r 1165 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR 1165 (1387)
T ss_pred ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCC
Confidence 4679999999987766555555567899999876 55689999999999999632 2234433321 11
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce--
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-- 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-- 383 (545)
+.=.-+.|.....+|++++.-..|+|||+...........+....|+++.-+-....++++|..||.|++||.+....
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred CCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 111345677666677777778899999999766534444455667888877666667888999999999999985432
Q ss_pred -eeEEe-ccC--CeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEE--EEecCCC---CCEEEEEEcCCCCEEEEEeCC
Q 009059 384 -AGVFK-CQS--GATQMRFQPRLG-RILAAAIENYISILDVETQVCR--LKLQGHK---NQVHSVCWNTSGEYLASVSDE 453 (545)
Q Consensus 384 -~~~~~-~~~--~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~--~~~~~h~---~~I~~l~~sp~g~~l~s~sdg 453 (545)
+...+ +.. +|..+.+.+.|- .+++++.+|.|++||++..... ..+..|. +.++++..++....+|+|+-+
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence 33333 222 388899988654 5999999999999999974222 2222232 359999999999999999999
Q ss_pred cEEEEEcCCCCCcceEEE----EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 454 LVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~----~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.|+||++..... ..+.. +......+.+++|||..-.+++|..|..|.||.....
T Consensus 1326 ~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999875422 11111 1122356799999999999999999999999986554
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-15 Score=137.43 Aligned_cols=233 Identities=19% Similarity=0.294 Sum_probs=181.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-C
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-N 380 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~ 380 (545)
-..+|+|.+|++|...+|.+.....|.||...... ....++..|...|++++|.|..+.++ +|+.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCCC
Confidence 45789999999999999999999999999987655 35678999999999999999987766 99999999999984 4
Q ss_pred Cce---eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE----EEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 381 GSC---AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 381 ~~~---~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
++- +-.++++..++++.|+|.++.|++++....|.||-++.... .+.-+.+...|+++.|+|++-+|++|+ |
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 332 23445678899999999999999999999999988765432 223345778999999999999999999 9
Q ss_pred CcEEEEEcC-----CC----------CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE--EEecc
Q 009059 453 ELVRVWSIG-----SG----------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLSA 515 (545)
Q Consensus 453 g~I~vwd~~-----~~----------~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~~~~~ 515 (545)
+..+||..- .. ..+..+.++....+.++.+.|+|+|..|+-.+.|..+.+-|...... .....
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~ 247 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT 247 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence 999998742 11 01223344546678899999999999999999999999999877752 23333
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 516 HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 516 h~~~V~~l~~spd~~~las~s~D 538 (545)
-.-+..++.|-.+. .++.+++|
T Consensus 248 ~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 248 AQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ccCCceeeEeecCC-ceeecCCC
Confidence 33667777775443 34444444
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=163.90 Aligned_cols=280 Identities=18% Similarity=0.220 Sum_probs=207.7
Q ss_pred ccCCceecccccCCccccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009059 211 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 290 (545)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lw 290 (545)
.++.+.+.|..+|....... ....|..+++|...++. +....+||.+.|+.++.+.+..++|+++.|..|++|
T Consensus 187 lgH~naVyca~fDrtg~~Ii----tgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYII----TGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HhhhhheeeeeeccccceEe----ecCccceeeeeeccchh---hhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 34445566777776666554 33457899999987775 456789999999999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCC-eeeeEec-cCcccEEEEEEeCCCCcEEEEE
Q 009059 291 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDLLCSC 367 (545)
Q Consensus 291 d~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~-~~~-~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~ 367 (545)
.+..+.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... +..+-+. .....+.++.|...+..++ ++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tg 334 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TG 334 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc-cc
Confidence 999999999999999999999999954 67789999999987 111 0001111 1234566677766655444 99
Q ss_pred cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
+.|++-..|.+....+.. ..+.-+.++.+- .+.+++-.+-.+++|++-++...+.+.+|...+..+.++|-+..
T Consensus 335 s~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred cCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 999998888765322211 011111111121 34555566788999999999999999999999999999997765
Q ss_pred EEE-Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 447 LAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 447 l~s-~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
++- ++ ||...|||+-.+.. +..+......+....|+++|..++....-|.++|.....++.
T Consensus 410 i~msag~dgst~iwdi~eg~p---ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIP---IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecccCCc---ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 553 44 99999999988743 333334467788899999999999988889999998765543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=137.96 Aligned_cols=268 Identities=14% Similarity=0.157 Sum_probs=202.0
Q ss_pred CcccceeeeeecCCc---eeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEE
Q 009059 236 DPRDRVGRSAEVGKG---FTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWIT 309 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~---~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~ 309 (545)
++.|..+++|.+..- ...+++.... .|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY 153 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY 153 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee
Confidence 345677888877643 2334555444 3558999999999999999999999999999999888877742 345899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeE
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV 386 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~ 386 (545)
.+..+|..+.|++.+.++.|.+||.+...... ..+.........+.|+|....|+++.+..+.+-+||++.... +..
T Consensus 154 ~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 154 HMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred ecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 99999999999999999999999998654222 233334567888999999999999999999999999985431 111
Q ss_pred Ee----cc---CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-EEEecCCC-------CCEEEEEEcCCCCEEEEEe
Q 009059 387 FK----CQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHK-------NQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 387 ~~----~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~-------~~I~~l~~sp~g~~l~s~s 451 (545)
.. .. .....+.|+|.|+.+++.-....-.+||+-+..+ +..+. |. ..+.+++|..+ .-+++|+
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D-~~v~tGS 311 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD-YTVATGS 311 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc-eeeeccC
Confidence 11 11 2246789999999999988888888899887544 33333 32 25677788654 4488888
Q ss_pred CC-cEEEEEcCCCCC--------------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 452 DE-LVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 452 dg-~I~vwd~~~~~~--------------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
|. .|++|.+..... ...+..+++|..-+..+.|+|....|++.+-...++||.-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 55 999999854211 1234567889999999999999999999999999999954
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=148.47 Aligned_cols=206 Identities=14% Similarity=0.148 Sum_probs=164.7
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
+.|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|++++.||.|++|.-.. ....++.....+|+|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4677888999999988 56788888999999999999999999999999999999998653 21334455677899999
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 434 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~ 434 (545)
|.|+.+.++++. .+.+.+-.+.....+-..+ +.+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|..+
T Consensus 153 W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 999998888665 4567776666544444444 55568999999999999999999999999976 4556666679999
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
|++++|.|+ +.++.++-+++++=. ...+.|..++|++||..+++|+..|.+.+
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999999 667767666555221 23567999999999999999999996544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-13 Score=125.42 Aligned_cols=233 Identities=15% Similarity=0.228 Sum_probs=164.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCC------CeEEEEECCCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP 337 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~d------g~I~vwd~~~~ 337 (545)
....++|..|..-+++|..+ -.+||+.+..+.......+.+.+.-+..---.++|+- |+.+ ..|.|||=. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 34559999999888888755 5899999876654443333332222222223345554 3332 479999944 3
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEec---cCCeeEEEEeCCCCEEEEEE-CCC
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IEN 412 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~-~dg 412 (545)
+.++..+. ...+|.++.+.++ .+++.- .+.|++|... +-+.++.+.. +.+..+++-..+...|+.-+ .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33455555 5678999999976 344333 7789999987 4555555543 33444444333433444433 469
Q ss_pred eEEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEee--CCCceEEEEEcC
Q 009059 413 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 486 (545)
Q Consensus 413 ~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~sp 486 (545)
.|.|.|+...+. ...+..|...|.|++.+-+|..||+++ .| .|||||..++ ..+.++.. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 467888999999999999999999999 77 7999999998 66666653 346799999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCC
Q 009059 487 TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+|++++..|+|+||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998865
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=139.54 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=147.7
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 430 (545)
.+++|+.+| ..+++++.||++|+|+.... .......++..|.++.|+|++..|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 678899886 46779999999999996544 444556678899999999999999999999 999999999977665553
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCcEEEEEcCCCCCcc--eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 431 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 431 --h~~~I~~l~~sp~g---~~l~s~s---dg~I~vwd~~~~~~~~--~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.......+.|+.++ .+++.+. -+.|+.||+....... ...........|.+++.+++|++++.|+.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23356677888776 3333333 4478887775432211 222223345679999999999999999999999
Q ss_pred EEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 501 ELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 501 ~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
-|++..+.+.+ ....|...|+.+.|+||.+++++.+.|..+.|
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 99999998888 34589999999999999999999888877765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-14 Score=146.01 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=159.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+.+..|+|++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777764 44444555677889999999999999887653 3699999987753 33333445667899999999
Q ss_pred cEEEEEcCCCcEEEE--ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCe--EEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg~I~lw--d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~--I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.+|...+| |+..+................|+|+|..++..+. ++. |+++++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888787778775555 5555543332223334567889999998887664 344 445555555433222 2233445
Q ss_pred EEEEcCCCCEEEEEe-CC---cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
...|+|+|++|+..+ ++ .|.+||+.++.. . .+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 678999999998776 43 699999987632 1 2221 22346789999999998888665 57777885544
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 009059 510 TLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd 528 (545)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456567777888889874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-15 Score=144.50 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=164.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEE-----cCCCCEEEEEeCCCeEEEEECC
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~-----sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
++...++-.|++|+..- ...+++|+...+..+ +.+. .....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y-~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREY-KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcc-cCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 44455555677776653 347888887643222 1111 1122344445 3456678888888889988876
Q ss_pred CCCeeeeEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.... .+.+. -.+..|+|+.|.|.++.++..+-.+|.+++||..- .......+....+++..+.+....
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5322 11111 13468999999999888888889999999999721 111111122223344444333221
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+. .+..++..+.--.+.|+.++|+|||++||+.+ ||.+||||+.+. +.+..++.--+...|++|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11133333433456899999999999999999 999999999876 444455555678999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC
Q 009059 491 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 527 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 527 (545)
|++|+.|+-|.||.+.+.+++ .-.+|...|..++|.|
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999 5679999999999983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=137.08 Aligned_cols=260 Identities=15% Similarity=0.204 Sum_probs=195.6
Q ss_pred CCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 263 TSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 263 ~~~V~~l~~spdg~--~latg~~dg~I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
...|..++|.-|++ .|...+.+..+..+.+........+ ......|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 34577777776554 4554546667777776665544332 3445667666664 347888889999999998
Q ss_pred CCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEEecc----------CCeeEEEEe
Q 009059 335 ENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQ----------SGATQMRFQ 399 (545)
Q Consensus 335 ~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~----------~~v~~l~~s 399 (545)
+.+. .++..+..+ ..+..+.-++...+++++|+.. ..+.+||+...+.+..-+.. --++.+.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8443 123333323 5677788888888999999988 89999999988655443321 115678898
Q ss_pred CC--CCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE-EEee
Q 009059 400 PR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELSC 474 (545)
Q Consensus 400 p~--~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~-~~~~ 474 (545)
+. ...|++++.-+.|++||.+.+ +++..+.-...+|+++...|++++|++|. -+.+..||++.+. ... .+.+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg 288 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKG 288 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce---eeccccCC
Confidence 87 788999999999999999975 56777877788999999999999999999 8899999999873 333 3677
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 528 (545)
..+.|+++..+|..+++++++-|..|+|+|+.+.+++.-..-...+++|-+.++
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 788999999999999999999999999999999777633334455667766554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=147.90 Aligned_cols=239 Identities=15% Similarity=0.240 Sum_probs=169.7
Q ss_pred EcCCCCEEEE--EeCCCcEEEEEcCC-CeEE----EEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCe---
Q 009059 271 FSPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY--- 339 (545)
Q Consensus 271 ~spdg~~lat--g~~dg~I~lwd~~~-~~~~----~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~--- 339 (545)
|+.+.+++|+ .+.-|.|-||++.. |++. -.+. ....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444556554 35568999999864 3322 1221 346799999999 778999999999999999876542
Q ss_pred ---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 340 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 340 ---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
+...+..|...|+++.|+|-...++++++.|.+|++||+.+.+....+. +...|..++|+|+|..+++.+.||.|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 3457889999999999999888899999999999999999988776664 556799999999999999999999999
Q ss_pred EEECCCCEE-EEEecCC-CCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCC
Q 009059 416 ILDVETQVC-RLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPT 487 (545)
Q Consensus 416 i~d~~~~~~-~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~ 487 (545)
+|+.+.++. ++.-.+. ...--.|.|.-+|+++++.+ |. .|.+||..+-.. ..+.+.... ...+.--.+.+|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCC
Confidence 999987643 3332221 12335677888999888776 54 788998765431 122221111 111112234555
Q ss_pred CCE-EEEEEcCCeEEEEeCCCCeEE
Q 009059 488 FPS-LLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 488 ~~~-l~~~~~dg~I~iwd~~~~~~~ 511 (545)
... +++|-.|..|++|.+-.....
T Consensus 825 s~~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred CceEEEecCCCceEEEEEecCCCce
Confidence 554 455666779999998655443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=146.32 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=160.8
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+.+||...+. .+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+++|+||
T Consensus 184 ~~l~i~D~~g~~----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 345666654332 33455677889999999999999987743 469999998876543 3334445568899999
Q ss_pred CCEEE-EEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc--EEEEECCCCceeeEEeccC
Q 009059 317 LSRLA-TSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 317 ~~~l~-t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~ 391 (545)
|+.|+ +.+.+| .|.+||+.++. +..+..+.......+|+|++..++++...+|. |+++|+.+++.........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 99776 445555 59999998765 45555565566788999999888877766655 7777877766544333233
Q ss_pred CeeEEEEeCCCCEEEEEECCC---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C--cEEEEEcCCCC
Q 009059 392 GATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGS 464 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~ 464 (545)
......|+|++++++....++ .|.+||+.++... .+. +........|+|+|++|+..+ + + .|.++++...
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~- 413 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR- 413 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence 355789999999988876543 6999999887655 333 233455679999999888776 2 2 6777777542
Q ss_pred CcceEEEEeeCCCceEEEEEcC
Q 009059 465 KGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp 486 (545)
....+..+...+...+|+|
T Consensus 414 ---~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 ---VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---ceEEcccCCCCCCCCccCC
Confidence 2333333445566667765
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-14 Score=144.09 Aligned_cols=234 Identities=17% Similarity=0.135 Sum_probs=159.0
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+.++|..... .+.+..+...+.+.+|||||+.||..+. +..|++|++.+++..... ...+.+..++|+||
T Consensus 179 ~~l~~~d~dg~~----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCC----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 345555544332 2233456778999999999999987642 357999999887644322 22333456899999
Q ss_pred CCEEEEE-eCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc--EEEEECCCCceeeEEeccC
Q 009059 317 LSRLATS-SADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 317 ~~~l~t~-s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~ 391 (545)
|+.|+.. +.+| .|.+||+.++. ...+..+...+....|+|+++.++++...++. |+++|+.+++.........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 9988865 4444 58889998765 34445455678899999999888877765554 5555777665543333333
Q ss_pred CeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC---cEEEEEcCCCC
Q 009059 392 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGS 464 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~ 464 (545)
......|+|+|++++..+.+ ..|++||+.++.... +.. ........|+|||++|+..+ ++ .+.++++...
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~- 408 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR- 408 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-
Confidence 45678999999998887653 368899998886443 332 12334678999999998888 55 3677777432
Q ss_pred CcceEEEEeeCCCceEEEEEcC
Q 009059 465 KGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp 486 (545)
....+..+...+...+|+|
T Consensus 409 ---~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 ---FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---CeEECccCCCCcCCcccCC
Confidence 3344555677788888887
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=135.48 Aligned_cols=268 Identities=18% Similarity=0.280 Sum_probs=173.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-----eC-----CCeEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SA-----DRTVRVW 332 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-----s~-----dg~I~vw 332 (545)
..+++..+++++|+++|.+. +..++|++..++..+.+...- .+.++.|+|-+.+|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477889999999999875 678999999888655444433 78999999999998762 11 2357799
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--------------------
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-------------------- 392 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-------------------- 392 (545)
++++ ......+..-...-+++.|++|.. +. .--..+.+++|++.+.+....--+..+
T Consensus 111 ~vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence 9987 332222222111124666666532 21 111234555555543221111111111
Q ss_pred --------------------------------eeEEEEeCCCCEEEEEE-C--C---------CeEEEEECCCCEEEEEe
Q 009059 393 --------------------------------ATQMRFQPRLGRILAAA-I--E---------NYISILDVETQVCRLKL 428 (545)
Q Consensus 393 --------------------------------v~~l~~sp~~~~l~~~~-~--d---------g~I~i~d~~~~~~~~~~ 428 (545)
-..+.|++.+.-|++.. . | ..++++++....+...+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 22455665554433321 1 2 25777777744555444
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEE
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLEL 502 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~i 502 (545)
. ..++|+++.|+|+++-++++. --.+.|||++-. . .+.-..++-+++-|+|.|++|+.+|-+ |.|.|
T Consensus 268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----P--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----E--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 4 478999999999998776655 558999998642 3 333456788899999999999999876 49999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeC------CCcEEEcC
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 545 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~------Dg~I~iWd 545 (545)
||+.+.+++ .+..-. -+-+.|+|||.+++|+.. |+.++||+
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 999998777 333332 345789999999998874 67788885
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=127.47 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=170.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECC
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 379 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~ 379 (545)
....++|+.|...+++|..+| .+||+.+--+... +.+....-.+..+-|- .+.+...|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998777 8999987533211 1111111223333333 24555555544 479999988
Q ss_pred CCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe--CCc
Q 009059 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 454 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s--dg~ 454 (545)
..+++.++....+|..+.+.++ .++.-.++.|+||... +.+.++.+.. ....+.+++-..+..+||.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999986 4555678999999988 4455555543 223344454444556777766 779
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCCCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 530 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd~~ 530 (545)
|.|-|+...... .-..+..|...|.+++...+|..+++++..| -|+|||..++..+ ++. .....|.+|+|||+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999875331 3467788999999999999999999999999 5899999999888 443 2456799999999999
Q ss_pred EEEEEeCCCcEEEc
Q 009059 531 MVASASHDKCVKIW 544 (545)
Q Consensus 531 ~las~s~Dg~I~iW 544 (545)
+||++|+.|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-12 Score=126.84 Aligned_cols=263 Identities=12% Similarity=0.126 Sum_probs=181.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcCC--Ce--EEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGH----DKKAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWD 333 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~----dg~I~lwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd 333 (545)
......++++|++++|.+... ++.|..|.+.. ++ .+............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 344567899999999998876 46898888765 33 33344434455678999999999999875 89999999
Q ss_pred CCCCCeeeeE---ec----------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eee----EEeccCCee
Q 009059 334 TENPDYSLRT---FT----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG----VFKCQSGAT 394 (545)
Q Consensus 334 ~~~~~~~~~~---~~----------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~----~~~~~~~v~ 394 (545)
+......... +. .......++.|+|+++.++++.-....|++|++.... ... .+....+..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9874332211 11 1234578899999998888766556689999997654 322 223456689
Q ss_pred EEEEeCCCCEEEEEEC-CCeEEEEECC--CCE--EEEEecC----C--CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 395 QMRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG----H--KNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~-dg~I~i~d~~--~~~--~~~~~~~----h--~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
.+.|+|+++++++... ++.|.+|++. ++. .+..+.. . ......|+++|+|++|+++. ++.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 9999999999888776 7889999888 443 2222221 1 12688999999999999887 6699999994
Q ss_pred C-CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeC--CCCeEEEec--cCCCCeeEEEE
Q 009059 462 S-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 525 (545)
Q Consensus 462 ~-~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~~ 525 (545)
. ......+..+.......+.+.++|++++|+++..+ +.|.+|++ +++.+.... ..-....||.|
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 23345666666666778999999999999998865 48888866 566655322 23344556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-14 Score=130.04 Aligned_cols=277 Identities=17% Similarity=0.308 Sum_probs=190.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccC------------CccEEEEEEcCCC--CEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h------------~~~V~~l~~sp~~--~~l~t~ 323 (545)
.+-|.++.|..+|.+||||..+|.|.+|.-+... ....+..| ...|..++|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999643221 22333333 3458889998864 467777
Q ss_pred eCCCeEEEEECCCCCeee----------------------------------eE-eccCcccEEEEEEeCCCCcEEEEEc
Q 009059 324 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~----------------------------------~~-~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
+.|.+|++|.+....... +. -.+|.-.|.+|.++.|.+.++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 899999999876432111 11 125888899999999987666 554
Q ss_pred CCCcEEEEECCCCc-eeeEEe--------ccCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEE----EEec-----
Q 009059 369 NNSEIRYWSINNGS-CAGVFK--------CQSGATQMRFQPR-LGRILAAAIENYISILDVETQVCR----LKLQ----- 429 (545)
Q Consensus 369 ~dg~I~lwd~~~~~-~~~~~~--------~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~----~~~~----- 429 (545)
|=.|.+|+++--. +..... ...-|++..|+|. .+.++..++.|.|++.|++..... ..+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7789999986432 222211 1123788899995 466777888999999999843211 1111
Q ss_pred -------CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC------------C---ceEEEEEcCC
Q 009059 430 -------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT 487 (545)
Q Consensus 430 -------~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~------------~---~v~~~~~sp~ 487 (545)
.--..|..+.|+++|+|+++-.--+|++||+.... ..+.++..|. . .-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11246889999999999998877899999995443 3344444332 1 2356899999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE--Eec--------------------cC-------------CCCeeEEEEeCCCCEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 532 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~--~~~--------------------~h-------------~~~V~~l~~spd~~~l 532 (545)
+.++++|+..+.+++|++..+... ++. +. ...|...+|+|..+.+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544322 110 00 1124556899999999
Q ss_pred EEEeCCCcEEEc
Q 009059 533 ASASHDKCVKIW 544 (545)
Q Consensus 533 as~s~Dg~I~iW 544 (545)
|.+..+. +.||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 9888765 4443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=143.16 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=151.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 333 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd 333 (545)
.+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999887643 359999999886643 333345567899999999887 467788777776
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE--CCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++........+..+...+....|+|+|+.+++++..+|...+|. +.++................|+|+|++++..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54222224556556666678899999998887766566666665 4455433332222334567899999999887765
Q ss_pred C---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 412 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 412 g---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
+ .|++||+.+++...... ........|+|+|++|+... + + .+.+.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 69999999876543322 23346789999999988877 3 3 35555653 2 223334444556667777
Q ss_pred cCC
Q 009059 485 HPT 487 (545)
Q Consensus 485 sp~ 487 (545)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 763
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-13 Score=140.82 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=160.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+.++|.... ..+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+|||
T Consensus 183 ~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 4445554322 23445678889999999999999988764 468999999887654 444566678889999999
Q ss_pred CEEE-EEeCCCe--EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCC
Q 009059 318 SRLA-TSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 318 ~~l~-t~s~dg~--I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~ 392 (545)
+.|+ +.+.++. |.+||+.++. ...+..+........|+|+++.++++...+| .|++||+..++..........
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 9776 4555554 7777887654 4556666666778999999988887665544 688889887665554444455
Q ss_pred eeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C------CcEEEEEcCC
Q 009059 393 ATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGS 462 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d------g~I~vwd~~~ 462 (545)
+....|+|+++.++....+ ..|.+||+..+... .+. ....+..+.|+|||+.|+... + ..++++|+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 6778999999999887653 36888998665432 232 233567889999999887755 2 2477777765
Q ss_pred CCCcceEEEEeeCCCceEEEEEcC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+.. ..+. ....+...+|+|
T Consensus 414 ~~~----~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNE----REVP-TPGDASDPAWSP 432 (435)
T ss_pred Cce----EEcc-CCCCccCcccCC
Confidence 421 2222 233455666765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-12 Score=125.57 Aligned_cols=268 Identities=13% Similarity=0.167 Sum_probs=181.7
Q ss_pred EEEEeCC----CcEEEEEc--CCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--Ce-eeeE
Q 009059 278 LATGGHD----KKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLRT 343 (545)
Q Consensus 278 latg~~d----g~I~lwd~--~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~----dg~I~vwd~~~~--~~-~~~~ 343 (545)
+++|++. +.|.+|++ +++++...- .........++++|++++|+++.. ++.|..|++... .. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 68998887 455543221 123345677999999999999877 569999998764 22 1223
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeE---Ee-----------ccCCeeEEEEeCCCCEEEEE
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~---~~-----------~~~~v~~l~~sp~~~~l~~~ 408 (545)
..........++++|++..++++...+|.|.++++.. +..... +. ......++.|+|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323455678999999999998888899999999987 443332 21 12347899999999998887
Q ss_pred EC-CCeEEEEECCCCE--E--EEEec-CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeC----
Q 009059 409 AI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT---- 475 (545)
Q Consensus 409 ~~-dg~I~i~d~~~~~--~--~~~~~-~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~---- 475 (545)
.. ...|++|++.... . ...+. ........++|+|+++++++.. ++.|.+|++.... ....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 75 5689999987643 2 22222 3456789999999999988877 7799999998221 22333333321
Q ss_pred --CCceEEEEEcCCCCEEEEEEcC-CeEEEEeCC--CCeEE---EeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 476 --GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 476 --~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
......++++|++++|+++... +.|.+|+++ ++++. .+.........++++|+|++|+++. .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999888755 489999983 34433 2223345589999999999999887 456788773
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=147.39 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=187.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.-..+.++.+|++|+.|+..|.|..+|+.+... ...+. -...|.++.|..+. .++|++ ....++|||-. |..+..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNE-QFFAVA-QKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcch-HHHHhh-hhceEEEecCC-CcEEee
Confidence 456788999999999999999999999998764 33332 45678999998774 455444 47789999954 777888
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
++....+..+.|.|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|.....
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-- 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-- 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence 88888999999999966677777889999999999999999988888999999999999999998 999999998776
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+.+..+-+|.++|.++++.++|.++++++.|..++|||++....+ ++.. ..+...+++|..| ++.++....|.||
T Consensus 284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 667778889999999999999999999999999999999987755 3332 4567788888655 3444455578888
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
.
T Consensus 360 ~ 360 (545)
T KOG1272|consen 360 K 360 (545)
T ss_pred h
Confidence 4
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-13 Score=139.15 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=161.7
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 361 (545)
..|.++|..... ...+..+...+...+|+||+++|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 34455566779999999999999987654 4799999987653 33344556677899999998
Q ss_pred cEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEE
Q 009059 362 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 362 ~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
.++++.+.++ .|++||+.++................|+|++.+|+..+.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444433345577899999988877653 3 6888898877643 3433556678
Q ss_pred EEEEcCCCCEEEEEe-CC---cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCe
Q 009059 437 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 509 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg---~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 509 (545)
.+.|+|+|++|+.+. ++ .|.+||+.++.. ..+.. ........|+|++++|+....++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 788999876421 12221 12334568999999988887765 56777766555
Q ss_pred EEEeccCCCCeeEEEE
Q 009059 510 TLTLSAHDKLVSSLAA 525 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~ 525 (545)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4445444555555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-14 Score=130.28 Aligned_cols=252 Identities=17% Similarity=0.260 Sum_probs=190.9
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~-~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
..+..+..++||.+.|+....-|-..-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 344456778999999999999998888999999999999954 3444443332 23567899999999999999999999
Q ss_pred EEEEECCCC---CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 329 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 329 I~vwd~~~~---~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
+.-+.+... ....+.+..|...|..+.|+...+. +++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998876532 1235677789999999999877554 44888887766444455555544433333333333322 45
Q ss_pred EEEECCCeEEEEEC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 406 LAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 406 ~~~~~dg~I~i~d~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
++|...|.|.+..+ ..-..+.++.+|.+.+.+++|.+...+|.+|. |..+.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 56666676655544 44567889999999999999999999999999 8899999997653 4566788899999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
...+--+.+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888899999999999999864
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=130.67 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=182.9
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCeee-----eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 304 HTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 304 h~~~V~~l~~sp~~~--~l~t~s~dg~I~vwd~~~~~~~~-----~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
....|..++|.-+++ .|+.++.|..+..+.+......- ........+|..++... ..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 345677777765443 45555566677777776554311 13344566777777652 234488889999999
Q ss_pred ECCCCc----eeeEEeccCCeeEEEEeCCCCEEEE-EECC--CeEEEEECCCCEEEEEecCCC---------CCEEEEEE
Q 009059 377 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGHK---------NQVHSVCW 440 (545)
Q Consensus 377 d~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~~-~~~d--g~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~ 440 (545)
..+.+. .+..+....++..+.-.+....+++ |+.. ..+.|||++..+.+..-+.-. -+++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 988433 3445555677778887776666665 7777 899999999987666544321 25678889
Q ss_pred cCC--CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--Eecc
Q 009059 441 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 515 (545)
Q Consensus 441 sp~--g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~ 515 (545)
-+. ...|++++ -+.|++||.+... .++..+.....+++++...|++++|+++..-+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8899999998654 677888888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 516 HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 516 h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+.|.+|..+|...+||++|-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999987
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-12 Score=129.05 Aligned_cols=262 Identities=11% Similarity=0.058 Sum_probs=171.3
Q ss_pred EE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 277 LL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 277 ~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
++ ++-..++.|.|.|..+.+.+..+......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGIA 84 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceEE
Confidence 44 4455689999999999999999986555445578999999999999999999999998875 666653 34578899
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--------CCeeEEEEeCCCCEEEEEECC-CeEEEEECCCCEEE-
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR- 425 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--------~~v~~l~~sp~~~~l~~~~~d-g~I~i~d~~~~~~~- 425 (545)
++++|+++++++...+.+.++|.++.+.++.+... ..+..+..++....+++.-.| +.|.+.|......+
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 99999999988889999999999999999887642 246677788887767766664 89999998765322
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcCC----------CC
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------FP 489 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp~----------~~ 489 (545)
..............|+|+++|++++. ++.|-++|..+. ..+..+.. |......+ .+|. +.
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 22333456788999999999988776 779999998876 33333321 22222221 1222 23
Q ss_pred EEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE----eCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~----s~Dg~I~iWd 545 (545)
..++.-..+.+.+||....+.+ .+...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 3333333445667898898888 45544444 778889999999988 3446777765
|
... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=143.02 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=159.3
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEE
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR 374 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~ 374 (545)
.+...+.+|.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|+.|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456788999999999999999999999999999999998766655567899999999999984 456888999999999
Q ss_pred EEECCCCc----------eeeEEe-ccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEEEE----------EecCCC
Q 009059 375 YWSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRL----------KLQGHK 432 (545)
Q Consensus 375 lwd~~~~~----------~~~~~~-~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~~~----------~~~~h~ 432 (545)
+||+...+ ....+. +...|..++..|++ ..+.+++.||+|+-||++....-. .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99998422 122222 23457778888887 678899999999999998742111 111122
Q ss_pred CCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC---------------cceEEEEee-C--------CC---ceEEEE
Q 009059 433 NQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---------------GECIHELSC-T--------GN---KFHSCV 483 (545)
Q Consensus 433 ~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~---------------~~~i~~~~~-~--------~~---~v~~~~ 483 (545)
-...|+.++|.. .+|++|+ |-..++||.+...+ ..|+.-+.. | .. .++-+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 356889999965 5777777 77999999532100 012222211 1 11 145668
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|+|+|..|++.-....|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999999999888889999999887655
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-13 Score=126.94 Aligned_cols=228 Identities=16% Similarity=0.178 Sum_probs=159.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 381 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---- 381 (545)
-.+..++|++.-..++++..|-.|++||-.. +.+..........|+|++|-|.+...++.|.. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3467789999777789999999999999876 33222223345689999999988888877774 45999976421
Q ss_pred c--------eeeEE--eccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 382 S--------CAGVF--KCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 382 ~--------~~~~~--~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
. +...+ ..+..|+.+.|.++|..+++++. +..|.|||..++..+.......+.+.-+.|+|||.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 11122 23456999999999999998876 6799999999987665554456788999999999999999
Q ss_pred e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCC----------eEEE------
Q 009059 451 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTEN----------KTLT------ 512 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~----------~~~~------ 512 (545)
. |+..++|.....- .+. ......+.|...+|+|+|++|+.+.... .|+-...... +.+.
T Consensus 257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 8 9999999654321 111 2222345899999999999877665543 3332221111 0111
Q ss_pred ---ecc----CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 513 ---LSA----HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 513 ---~~~----h~~~V~~l~~spd~~~las~s~D 538 (545)
... -.+.+.+|+|.|.|.+||+.-..
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 111 13678899999999999987543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=144.36 Aligned_cols=251 Identities=16% Similarity=0.218 Sum_probs=174.3
Q ss_pred EEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCc
Q 009059 290 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 290 wd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
|+. .|..+..+..|...|..++.++.. .+|++|+.||+|++|+...-.. ...++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 664 568889999999999999998755 9999999999999999864221 12344445678899999888766
Q ss_pred EEEEEcCCCcEEEEECCCCc-------eeeEEe--ccCCeeEE-EEeCC-CC-EEEEEECCCeEEEEECCCCEEEEEec-
Q 009059 363 LLCSCDNNSEIRYWSINNGS-------CAGVFK--CQSGATQM-RFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ- 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~~~-------~~~~~~--~~~~v~~l-~~sp~-~~-~l~~~~~dg~I~i~d~~~~~~~~~~~- 429 (545)
++ .++.||.|++.++.... +.+... ..+.+..+ +|... +. .++.++.-+.|..||++.......++
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 65 66889999999987521 111111 12223333 33332 23 57778888999999999876555443
Q ss_pred -CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceEEEEEcCCC---CEEEEEEc--CCeEE
Q 009059 430 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTF---PSLLVIGC--YETLE 501 (545)
Q Consensus 430 -~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~~~sp~~---~~l~~~~~--dg~I~ 501 (545)
...+.|++++.+|.+.+++.|. .|.+.+||++-+ ..+.... .+..++..+..+|-. ...++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 3457899999999999999999 889999999865 3343332 344667777666544 34555544 55899
Q ss_pred EEeCCCCeEE-EeccC-------------------CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 502 LWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 502 iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++.++... .+... .-......+..-+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988654 22211 11122233334456899999999999998
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=135.32 Aligned_cols=234 Identities=16% Similarity=0.049 Sum_probs=162.9
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477778775544 4455567789999999999999877644 3689999987653 333334445667899999998
Q ss_pred EEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 363 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 363 ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
++++...+| .|++||+.+++...............|+|+++.++..+. + ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 688889998876554444444667889999998887765 3 368888988776433221 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeE
Q 009059 438 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 510 (545)
Q Consensus 438 l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 510 (545)
..|+|+|++|+... ++ .|.+||+.++.. . .+.. ........|+|+|+.++..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~---~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-R---ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-E---EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 1 2221 11223568999999988877653 688889876666
Q ss_pred EEeccCCCCeeEEEEeCC
Q 009059 511 LTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd 528 (545)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 555556667788888863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-14 Score=125.99 Aligned_cols=259 Identities=15% Similarity=0.195 Sum_probs=177.2
Q ss_pred CcccceeeeeecCCceeeEEEEeec-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.....++.+|...+.. ....++ .|...|+.+..-|+ ..|.+-+.|..+.+|++.....+.. |.-.++++.|.
T Consensus 31 g~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFC 103 (323)
T KOG0322|consen 31 GLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFC 103 (323)
T ss_pred ccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccc
Confidence 3345678888877654 344566 67788999999987 4677888999999999986544432 44445555554
Q ss_pred CC-----CC----EEEEEeCCC-eEEEEECCCCCeeeeEe----ccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEEC
Q 009059 315 PS-----LS----RLATSSADR-TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 315 p~-----~~----~l~t~s~dg-~I~vwd~~~~~~~~~~~----~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~ 378 (545)
+- ++ .++.-+... .+++-|...... +... .+..+.+++..+..+ ...++++|.++|.+.+||+
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq-v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~ 182 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ-VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL 182 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccce-eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEc
Confidence 31 11 111111100 122222221111 1111 123467777775332 2446778889999999999
Q ss_pred CCCceeeEE-----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--E--EEEEecCCCCCEEEEEEcCC
Q 009059 379 NNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V--CRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 379 ~~~~~~~~~-----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~--~~~~~~~h~~~I~~l~~sp~ 443 (545)
.++..+..+ .+..++.++.|.+.-..=+.++.+..+..|.+... . ....+.-....|..+.+-||
T Consensus 183 S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD 262 (323)
T KOG0322|consen 183 STGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD 262 (323)
T ss_pred cCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccC
Confidence 987433322 24566888988876566667777788888887632 2 12223333457888999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++++|+++ |+.||||+.++. ..+..++.|...|++++|+|+.+.+++++.|..|-+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999 999999999888 677788889999999999999999999999999999986
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-14 Score=131.23 Aligned_cols=222 Identities=17% Similarity=0.228 Sum_probs=160.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
-.+|+|+|+++|+++.- .+.|-|.++-+. .+.+. .-..|..+.|..+..++++....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~-~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL-HQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH-HHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 36799999999999765 677777776442 22222 346788899999989999999999999999999887776665
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
...++..++|+|+|+.++..+. +-.|.+|.+.+.+.... .-.+..+..++|+|+|++.+..+ .+..-.+.+...+..
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 4567899999999987776665 88999999998876553 22345678999999999999888 322222222222223
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..+..+....-..+.+.|+|||..|++ ||---.-.+-...-.-.+..++|+|.+++|+.|+.|+.++|-
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 444555555666788999999986554 442111111111122457889999999999999999998873
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-12 Score=133.59 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=158.4
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
.|.++|...... ..+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++. ..+....+......|+|+++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 567778665443 3445567788999999999998876543 2 588889887653 223222334457899999998
Q ss_pred EEEEEcCCCc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 363 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 363 ll~s~s~dg~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
++++.+.+|. |++||+.+++...............|+|++..++..+. + ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8877777775 88889988776554444445677899999998877664 3 36888888877644322 12223345
Q ss_pred EEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeE
Q 009059 438 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 510 (545)
Q Consensus 438 l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 510 (545)
.+|+|+|++|+... ++ .|.++|+.++.. ..+... .......|+|+++.|+....++ .+++++.+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999988876 34 466677776532 112211 1223457999999888776654 588889866655
Q ss_pred EEeccCCCCeeEEEEeCC
Q 009059 511 LTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd 528 (545)
..+..+.+.+...+|+|-
T Consensus 430 ~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677888888873
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=119.25 Aligned_cols=145 Identities=18% Similarity=0.347 Sum_probs=106.6
Q ss_pred eeEEEEeCCCCEEEEEEC----------CCeEEEEEC--CCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe---CCcEE
Q 009059 393 ATQMRFQPRLGRILAAAI----------ENYISILDV--ETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVR 456 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~----------dg~I~i~d~--~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s---dg~I~ 456 (545)
-..+.|++.|.+|++-.. -+...+|.+ ... ....+.- ..++|.+++|+|+|+.+++.. +..|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346788888888776544 123444544 332 2333322 345799999999998876553 56999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~la 533 (545)
+||++ . ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+....|.. ++.++|+|||++|+
T Consensus 87 lyd~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEE
Confidence 99996 2 4555553 5678899999999999998754 579999999888886655554 78999999999999
Q ss_pred EEeC------CCcEEEcC
Q 009059 534 SASH------DKCVKIWK 545 (545)
Q Consensus 534 s~s~------Dg~I~iWd 545 (545)
++.. |+.++||+
T Consensus 160 ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEeccceeccccEEEEE
Confidence 9875 77889985
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=128.87 Aligned_cols=222 Identities=16% Similarity=0.156 Sum_probs=149.9
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCCC--eEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 330 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~dg--~I~ 330 (545)
+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+.|+. ...+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677789999999999999877644 368999998876543 3333344567899999998874 44455 688
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
+||+.++. ...+..+........|+|+++.++++...+| .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999988887766554 5777888877754433222334467899999998887
Q ss_pred ECC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 409 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 409 ~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
..+ + .|.+||+.++....... ........|+|+|+.|+... ++ .|.++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 753 3 58899998876533222 22223568999999988776 33 5667776432 22233334455666
Q ss_pred EEEcCC
Q 009059 482 CVFHPT 487 (545)
Q Consensus 482 ~~~sp~ 487 (545)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 667653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-13 Score=131.99 Aligned_cols=193 Identities=17% Similarity=0.257 Sum_probs=134.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccC
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH 347 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h 347 (545)
+.+--|+.|-..|.|.+.|....+..+.+ .-....|+|+.|-|. ...++.+-.+|.+.+||.+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---------- 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---------- 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc----------
Confidence 35556777777888988886552221111 113477999999984 456777788999999987321
Q ss_pred cccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 348 STTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 348 ~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
...+... ..+++..+-+--+.. ..+..++..+ .....+..++|+|+|.+|++.+.||.++|||..+.+.
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL 324 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH
Confidence 1111111 122322222111100 0111222211 2235789999999999999999999999999999887
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
+..++..-+...|++|+|||+||++|+ |+.|.||.+... +.+..-.+|..+|..++|.|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeecc
Confidence 777777778899999999999999999 999999999776 77888889999999999983
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-10 Score=109.00 Aligned_cols=268 Identities=12% Similarity=0.099 Sum_probs=186.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CeEEE--EeccCCccEEEEEEcCCCCEEEEEeC-CCeEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVR 330 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~--~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~ 330 (545)
+-.+.+.++-|+|+|+.+.|.++.. +|.|..|.++. |++.. .......+-+.+++++++++|+++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456677899999999999988865 47787777664 54432 22222334488999999999999876 57999
Q ss_pred EEECCCCCeee--eEeccCccc----------EEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----EEeccCCee
Q 009059 331 VWDTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGAT 394 (545)
Q Consensus 331 vwd~~~~~~~~--~~~~~h~~~----------V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~----~~~~~~~v~ 394 (545)
++-+....... .....|.+. +....+.|+++.+++..-.--.|.+|++..+.... .++...+..
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 99986543211 122335444 88899999987666444333469999999776543 234556789
Q ss_pred EEEEeCCCCEEEEEEC-CCeEEEEECCCC-EEEEEecC---------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 395 QMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
.+.|+|++++.++.+. +++|.+|..... ..+..++. -......|.++++|++|.++. .+.|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999999998888776 899999998873 22222221 234677899999999999988 4489999887
Q ss_pred CCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeC--CCCeEEEec--cCCCCeeEEEEe
Q 009059 462 SGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLAAS 526 (545)
Q Consensus 462 ~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~--~~~~~~~~~--~h~~~V~~l~~s 526 (545)
.... ...+.....+....+...|.+.+++|+++..++ .|.+|.+ .++++..+. .......||.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 5432 334444445555688999999999999999876 7888765 455554222 334445566653
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-11 Score=117.23 Aligned_cols=273 Identities=16% Similarity=0.220 Sum_probs=192.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---------------CcEEEEEcCCCeEEEEeccCCcc--EE-EEEEcCCCCEEEEEeC
Q 009059 264 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 325 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~d---------------g~I~lwd~~~~~~~~~l~~h~~~--V~-~l~~sp~~~~l~t~s~ 325 (545)
..|.-+.|+|.++||.+-... +.+.+||+.++..+..+.....+ .+ -+.|+-+.+|+|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 458899999999999996543 35999999999999998876665 55 68899888887765 3
Q ss_pred CCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCc-EEEE-----EcCCCcEEEEECCCCceeeEEec-cCCeeEEE
Q 009059 326 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 397 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~-ll~s-----~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~ 397 (545)
...++|+++ ++......+... ...|....|+|.++. .||. ....+.+++|.+..+..+..... ...-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 446999997 333322222222 256888888887432 2222 34577899999986666554332 22345688
Q ss_pred EeCCCCEEEEEE-----------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCC
Q 009059 398 FQPRLGRILAAA-----------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 463 (545)
Q Consensus 398 ~sp~~~~l~~~~-----------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~ 463 (545)
|.+.|.++++-. .+..++++++....+.... ...++|...+|.|.++.+++.+ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 999888876533 1356889998855444433 5678999999999987766655 669999999864
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe----
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 536 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s---- 536 (545)
. .+......-..+.|+|.+++++.++-++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 1 2233455667789999999999988875 89999998876663221223344568999999887764
Q ss_pred --CCCcEEEcC
Q 009059 537 --HDKCVKIWK 545 (545)
Q Consensus 537 --~Dg~I~iWd 545 (545)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 467899996
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=131.85 Aligned_cols=270 Identities=15% Similarity=0.182 Sum_probs=206.3
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC-CeE--EEEeccCCccEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES-FTV--KSTLEEHTQWIT 309 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~-~~~--~~~l~~h~~~V~ 309 (545)
..+.|+.+-+|||..+... .....+|...|....|-| +..-|++++.||.|++=.+.. +.. ...+..|.++|.
T Consensus 159 SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh 236 (559)
T KOG1334|consen 159 SGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH 236 (559)
T ss_pred ccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence 4567889999999988643 344568999999999988 445799999999999976643 332 355677999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEECCCCCe--eeeEeccCcc---cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 310 DVRFSPSL-SRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 310 ~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~---~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
-++.-|+. .-|.+++.|+.+.-+|+..... .+.....+.. ..+.++.+|...+.+++++.|-.+++||.+.-..
T Consensus 237 klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 237 KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 99999864 4689999999999999876432 1222233333 5788999999888999999999999999874221
Q ss_pred ------eeEE-------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC--C----------EEEE-EecCCCC--CE
Q 009059 384 ------AGVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q----------VCRL-KLQGHKN--QV 435 (545)
Q Consensus 384 ------~~~~-------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~--~----------~~~~-~~~~h~~--~I 435 (545)
+..+ .....|++++|+.++..++++..|-.|++|.-.- + ..+. .+++|.. .|
T Consensus 317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 1222 1234589999999999999999999999995432 2 1122 3677764 57
Q ss_pred EEEEE-cCCCCEEEEEeC-CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 436 HSVCW-NTSGEYLASVSD-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 436 ~~l~~-sp~g~~l~s~sd-g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
..+.| -|...|+++|+| |.|.||+-.++ +.+..+.+...-|+|+.-+|.-+.|+++|-|..|+||--.+.+
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 77765 588899999995 59999998877 5566666666689999999999999999999999999874433
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=137.38 Aligned_cols=268 Identities=16% Similarity=0.218 Sum_probs=186.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
|-+++++..+-. +||..|. --.|.+||+..+..+..+. .|...=.-. -.+.+++++..-+.+..=+..
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence 334555666554 5666654 4579999998877665442 331000000 023355555544434333222
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee-----EEEEeCCCCEEEEEEC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAI 410 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-----~l~~sp~~~~l~~~~~ 410 (545)
. ..+....+.|....+..+.. .++....+..+.+||...+.....+.+..... -+-++++.-++++++.
T Consensus 80 ~-----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 80 N-----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred h-----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 1 11222233444444444433 34455567889999999887777666544422 2334555556778888
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
-+.|.+|+....+....+.+|.+.|.++.|+.+|+++++.+ |..+++|++.+.+... ...-+|...++.++|+|+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence 99999999984444446889999999999999999999999 8899999999875433 355579999999999999
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++++.|-+.++|+.+....-.+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 7999999999999987666655666665 5799999999999999999999999996
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-10 Score=111.69 Aligned_cols=256 Identities=11% Similarity=0.058 Sum_probs=168.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEeccC-------
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 347 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~~~~~~~~~~h------- 347 (545)
+.|.+.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.+||..+.+. +..+.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544333 24 9999998887765 78999999998875 4444321
Q ss_pred cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEE-
Q 009059 348 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC- 424 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~- 424 (545)
......++++|+|+.++++--. +..|.+.|+.+++.+..+.......-...+.. .+++-+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCC--ccEEEeecCceEEEEecCCCceE
Confidence 2234478899999888766534 88999999999999998886553333332222 222334455444433322 211
Q ss_pred EEE---ecCCCCCEE-EEEEcC-CCCEEEEEeCCcEEEEEcCCCCC--cceEEEEee-------CCCceEEEEEcCCCCE
Q 009059 425 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPS 490 (545)
Q Consensus 425 ~~~---~~~h~~~I~-~l~~sp-~g~~l~s~sdg~I~vwd~~~~~~--~~~i~~~~~-------~~~~v~~~~~sp~~~~ 490 (545)
... +.....++. .-.|.+ +|+++....+|.|.+.|+..... ...+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001100 003345 88988888899999999754321 112222111 2233445999999999
Q ss_pred EEEEE----------cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 009059 491 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 491 l~~~~----------~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~I~iWd 545 (545)
+++.. ..+.|.++|..+++.+....-...+..|+++||++ +|++.. .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 98853 22489999999999995555567899999999999 777666 577788765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-12 Score=125.91 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=171.3
Q ss_pred cCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEE-eCCCCcEEEEEcCCCcEEEEECCC
Q 009059 303 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF-HPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+|...-+.|..+|||+|+ ++|..--.|++||+.+-. ++.-......+..+.. +.|-...+ .--.|.+|-+...-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhhc-
Confidence 477778999999999985 566678899999998644 3322322334444433 33322233 33347777654322
Q ss_pred CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEE
Q 009059 381 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 459 (545)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd 459 (545)
..-..+..+.....++++.-.--|++++....|+-++++.|..+..+....+.++++..++-..+|++|+ +|.|.+||
T Consensus 125 -G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 125 -GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2223333445556777776666788999999999999999999999988889999999999999999999 99999999
Q ss_pred cCCCCCcceEE---EEeeCC-----CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCC--CCeeEEEEeCC-
Q 009059 460 IGSGSKGECIH---ELSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV- 528 (545)
Q Consensus 460 ~~~~~~~~~i~---~~~~~~-----~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~--~~V~~l~~spd- 528 (545)
.+.......+. .+..+. ..|+++.|+.+|-.+++|...|.+.|||++..+++....|. -+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 98763322221 111122 34999999999999999999999999999999999777675 57888899765
Q ss_pred -CCEEEEEeCCCcEEEcC
Q 009059 529 -NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 -~~~las~s~Dg~I~iWd 545 (545)
...|++.. ...++|||
T Consensus 284 ~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCceEEecc-hHHhhhcc
Confidence 34566653 46799997
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-11 Score=127.64 Aligned_cols=220 Identities=18% Similarity=0.200 Sum_probs=146.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEE-EeCCCe--EEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 331 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t-~s~dg~--I~v 331 (545)
.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.... ..........+|+|||+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999999877543 2588899988765332 222333457899999998775 455664 777
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
||+.++. ...+..+........|+|++..++++...++ .|+++|+.+++...............|+|++++++..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4455556566778899999998887776555 47777887776544322222344578999999988776
Q ss_pred CC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 410 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 410 ~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
.+ + .|.++|+.++.... +... .......|+|+|+.|+... ++ .+++++.. + .....+......+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCCC
Confidence 53 3 56778888876533 2222 1223457999999888766 33 47777763 3 2333444444556677
Q ss_pred EEcC
Q 009059 483 VFHP 486 (545)
Q Consensus 483 ~~sp 486 (545)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 7776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-11 Score=123.97 Aligned_cols=238 Identities=14% Similarity=0.112 Sum_probs=157.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE--E-EEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~--l-~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~ 359 (545)
+.|.+.|.+.+... .+......+..-+|+|||+. + ++...+| .|.+.++..+.. +.+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777777655443 34445556778899999975 2 2444444 577778876543 333434555667899999
Q ss_pred CCcEEEEEcCCC----cEEEEECCCC---ceeeEEecc-CCeeEEEEeCCCCEEEEEEC-CCe--EEEEECCC-CEEEEE
Q 009059 360 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 427 (545)
Q Consensus 360 ~~~ll~s~s~dg----~I~lwd~~~~---~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~-dg~--I~i~d~~~-~~~~~~ 427 (545)
|+.++++...+| .+.+|++..+ +........ .......|+|+|..|+..+. +|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775433 3444777653 333333222 23467899999998887764 554 55556542 233344
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeE
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 500 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I 500 (545)
+..+...+....|+|||++|+... ++ .|.+||+.++.. ..+......+....|+|+++.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 544556778899999999988766 23 799999987732 2222223456778999999988866543 379
Q ss_pred EEEeCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 501 ELWNMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 501 ~iwd~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666566667788898753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-12 Score=114.46 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=110.6
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEEcCC-CeEEEEecc-CCccEEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 009059 268 SCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATSS--ADRTVRVWD 333 (545)
Q Consensus 268 ~l~~spdg~~latg~~----------dg~I~lwd~~~-~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s--~dg~I~vwd 333 (545)
.+.|+++|++|++-.. -+...||.++. ......+.- ..++|.+++|+|+++.||+.. .++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4889999988766433 13355555522 233334432 345799999999999876653 567999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc--CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 410 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~- 410 (545)
++ .. .+..+ +...+..+.|+|+|..++++|. ..|.|.+||+++.+.+....+. .++.++|+|+|.+++++..
T Consensus 90 ~~-~~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GK-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-cc-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 97 22 24444 3567889999999987775552 3578999999998888887754 4789999999999998874
Q ss_pred -----CCeEEEEECCCCEEEE
Q 009059 411 -----ENYISILDVETQVCRL 426 (545)
Q Consensus 411 -----dg~I~i~d~~~~~~~~ 426 (545)
|+.++||+.. |+.+.
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cceeccccEEEEEec-CeEeE
Confidence 7889999985 44444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-11 Score=124.37 Aligned_cols=213 Identities=13% Similarity=0.114 Sum_probs=141.0
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc--EEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
.|.+.|.+... .+.+......+..-.|+|||.. ++++...+| .|++.++.+++........+......|+|+|+
T Consensus 166 ~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 56666766433 4445555667788899999876 333554443 58888998887666555556667789999999
Q ss_pred EEEEEEC-CC----eEEEEECCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEE--EcCCCCCcceEEE
Q 009059 404 RILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIHE 471 (545)
Q Consensus 404 ~l~~~~~-dg----~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vw--d~~~~~~~~~i~~ 471 (545)
.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++...+| ++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887664 22 3444676652 33333333333456789999999888766 5544444 443211 12233
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC-C--CcEEEc
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 544 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~-D--g~I~iW 544 (545)
+......+....|+|+|+.|+....+ ..|++||+.+++...+......+....|+|||++|+.... + ..|.+|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 33344566788999999998877654 3799999999988766555556788999999998875443 2 345554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-10 Score=106.58 Aligned_cols=260 Identities=10% Similarity=0.129 Sum_probs=181.7
Q ss_pred CCcEEEEEcCCC--eEE-EEeccCCccEEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CCeeee-EeccCcccEEEE
Q 009059 284 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN--PDYSLR-TFTGHSTTVMSL 354 (545)
Q Consensus 284 dg~I~lwd~~~~--~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g~I~vwd~~~--~~~~~~-~~~~h~~~V~~l 354 (545)
+.-|++|++.+. +.. ..+-.+...++-|+|+|+.++|+++..+ |.|..|.++. +...+. .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998732 221 1223466778999999999999998654 6788887775 332211 111122344889
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCC-Ccee---eEEeccCC----------eeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSG----------ATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~---~~~~~~~~----------v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
++++++..++++....|.|.++-++. |... ..+.+.+. +....+.|+++++++... ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777889999999965 4332 33444333 778899999888888775 568999999
Q ss_pred CCCEEEE----EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC-CCcceEEEEee------CCCceEEEEEcC
Q 009059 420 ETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHP 486 (545)
Q Consensus 420 ~~~~~~~----~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~-~~~~~i~~~~~------~~~~v~~~~~sp 486 (545)
..+.... .+ ........|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9775432 22 2455678999999999988887 899999999874 22234443332 235567889999
Q ss_pred CCCEEEEEEcCC-eEEEEeCCC--CeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC-cEEEc
Q 009059 487 TFPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 544 (545)
Q Consensus 487 ~~~~l~~~~~dg-~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg-~I~iW 544 (545)
+|++|+++.... .|.+|.+.. +++. ....+......+.|++++++|+++..|+ .|.+|
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 999888876543 788887754 4333 2233455588999999999999998764 46554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-11 Score=124.73 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=147.7
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
..|.++|..... .+.+..+...+....|+|+++.++++...+ ..|++||+.+++..........+..+.|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 367888876433 455556777899999999998887665443 4799999998876555555556777999999988
Q ss_pred EEEEEC-C--CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
|++... + ..|++||+.++... .+..+........|+|+|+.|+..+ ++ .|+++|+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999887543 3444555556789999999887766 33 68888877652 223333456
Q ss_pred ceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+....|+|++++|+.+..++ .|.+||+.++....+... .......|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544332 2345678999999888877654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=127.88 Aligned_cols=281 Identities=14% Similarity=0.191 Sum_probs=195.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+.||...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3567889999999998888888999999999999998753 34667888999999999999998888765 88
Q ss_pred eEEEEECCCCCeeeeEe-ccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEecc------CCeeEEEE
Q 009059 328 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRF 398 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~ 398 (545)
-|++||.--+....+.. ....+.+..+...+ +...+++.|+...+|+++|.+.++.+..++.- .-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 89999976554311111 11122333333333 33455666688999999999998877666532 33789999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE-EEcCCCCCcceEEEEeeCC
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v-wd~~~~~~~~~i~~~~~~~ 476 (545)
.+.|++++++-..|.|.+.|.++|+.+..+.........++- |..+.|+... |..+.| |....+ ......+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kppp 960 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPPP 960 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCCC
Confidence 999999999999999999999999998887765555555543 5666666665 888888 876554 2222222111
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC-------eEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.. -.-.-|..|++......+.+|--... ..+.-....+..++++.-|-+.-++.|...|.|.+
T Consensus 961 epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1111 11223555777777777777743211 11122234577888998888887888888888875
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=115.07 Aligned_cols=273 Identities=12% Similarity=0.151 Sum_probs=185.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...+++|++.++.....+. ...... ++..|+.|..+.|-- ..+.+.+|++...+.+.. +-|...|+.+.++|.+.
T Consensus 104 ~pn~~v~~vet~~~~s~~q--~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQ--KKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPE 178 (566)
T ss_pred CCceeeeeeccceehhhee--hhhhcC-cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCC
Confidence 4567788888854322221 112222 689999987654432 356899999887544322 23677899999998633
Q ss_pred --EEEE-----EeCCCeEEEEECCCCCe--e--eeEeccCcccEEEEEEeCCCCcEEEEEcC-----------CCcEEEE
Q 009059 319 --RLAT-----SSADRTVRVWDTENPDY--S--LRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------NSEIRYW 376 (545)
Q Consensus 319 --~l~t-----~s~dg~I~vwd~~~~~~--~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------dg~I~lw 376 (545)
.+|+ .+.-+.|+||.+..... . .+.|. ...-..+.|++.+..||+..+. ..++++.
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll 256 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL 256 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence 3433 23456899998873221 1 12222 2334467788887777655432 2468899
Q ss_pred ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---
Q 009059 377 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--- 451 (545)
Q Consensus 377 d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--- 451 (545)
++....+.-.+...++|.++.|++.+..++++. .-..+.|||++.. ++..+ ..++-+++-|+|.|++|+.++
T Consensus 257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence 998666777777789999999999998877655 4679999998754 44444 356778999999999999887
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc------CCeEEEEeCCCCeEEEeccCCCCeeEEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLA 524 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~ 524 (545)
.|.|.|||+.+. +++..+.. ..-+-+.|+|||.+|+++.. |+.++||+.....+.... .......+.
T Consensus 334 L~G~mEvwDv~n~---K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~ 407 (566)
T KOG2315|consen 334 LPGDMEVWDVPNR---KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVE 407 (566)
T ss_pred CCCceEEEeccch---hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhhee
Confidence 459999999875 56666554 34466799999999999986 568999998766544211 111566677
Q ss_pred EeC
Q 009059 525 AST 527 (545)
Q Consensus 525 ~sp 527 (545)
|-|
T Consensus 408 W~P 410 (566)
T KOG2315|consen 408 WRP 410 (566)
T ss_pred eee
Confidence 765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-11 Score=116.20 Aligned_cols=271 Identities=13% Similarity=0.165 Sum_probs=179.3
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----------CcEEEEEcCCCeEEEEeccC--CccE-EEEEEcCCCCEEEEEeCCCeEE
Q 009059 265 KVESCHFSPDGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~d-----------g~I~lwd~~~~~~~~~l~~h--~~~V-~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.|.-+.|||..+||+|-+.. ..++|||+.+|...+.+... ...+ .-..||.|++|+|.-..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 37889999999999996531 57899999999999887652 2222 346899999999988765 699
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRI 405 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l 405 (545)
||+...-.. +..-.-.-..|....|+|.+..|.+-.-. -..+.+-.+.+++.+++.....- -..+.|..+|.+|
T Consensus 330 IyEtpsf~l-ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFML-LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceee-ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 998875221 22111223568888999985433322211 12455666666666555443222 2346677777766
Q ss_pred EEEEC----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcC-CCCCcceEE
Q 009059 406 LAAAI----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKGECIH 470 (545)
Q Consensus 406 ~~~~~----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~-~~~~~~~i~ 470 (545)
.+-.. -..+.||.++........-.-...|...+|-|.|..+++-+ ..++.+|.+. +......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 55321 12456666665543222223567899999999998777655 3389999988 444445555
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.+.. ...+.+.|+|.|+++++++- .|.+.++|+.-..+. ....| ...+.+.|.|.|+|++|++.-..
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence 5543 56788999999999887754 569999999853333 33334 34678999999999999986543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-10 Score=116.36 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=149.9
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEecc---CCccEEEEEEc------C--------------CCCEEEEEeCCCeE
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 329 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l~~---h~~~V~~l~~s------p--------------~~~~l~t~s~dg~I 329 (545)
|-..|+|....||.+++|++..++....+.. -.+..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999888776642 22334444442 2 23467888889999
Q ss_pred EEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEE
Q 009059 330 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA 407 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~ 407 (545)
.+|++..++...+.. ..|.+.|.++.++.+- ..|.+++.|+.+..|+......++.+.... .+..++++|+++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999877533333 4799999999998774 567799999999999999999888887544 4889999999888877
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC-----CCEEEEEe--CCcEEEEEcCC
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 462 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~-----g~~l~s~s--dg~I~vwd~~~ 462 (545)
++ +.|++||+++++.+..|.+|.++|.++.|-.+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 75 78999999999999999999999999999876 77887776 66788887765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-10 Score=118.97 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=194.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------eEEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---------------~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
......|++|.....|+|+||.||.++|..+.+. ..-.++++|...|.-+.|+.+...|-|...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999976531 1225678999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 327 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
|.|.||-+-.+..+-... ...+..|.+++|+.+|..+ +....||.|.+=.++..+.-..--.......+.|+++...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999998776533222 2345678999999998655 47778999988777644332211111235678999998888
Q ss_pred EEEECCCeEEEEECCCC-------EEEEE----ecCCCCCEEEEEEc--------CCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 406 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~-------~~~~~----~~~h~~~I~~l~~s--------p~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+.+-..|.+.+||.... .+... +......|..++|. |+-..|+++. .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 88889999999997642 11111 11122346677774 4667888888 77888876554432
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
...+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++.-....|++++|--.|-.+|.+
T Consensus 252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 2222 2346788899999999999998753 4555554333333666667889999997666555544
Q ss_pred CCCcEEE
Q 009059 537 HDKCVKI 543 (545)
Q Consensus 537 ~Dg~I~i 543 (545)
.|+.|.+
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4555543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-09 Score=110.03 Aligned_cols=254 Identities=11% Similarity=0.045 Sum_probs=160.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~-l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V- 351 (545)
++..++.++.++.++.+|..+|+.+....... .+.+ ... .+..++.++.+|.|..||.++++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46678888889999999999999887665332 2221 112 345677788899999999998875 33333221111
Q ss_pred ----EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-----e---eEEEEeC--CCCEEEEEECCCeEEEE
Q 009059 352 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----A---TQMRFQP--RLGRILAAAIENYISIL 417 (545)
Q Consensus 352 ----~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-----v---~~l~~sp--~~~~l~~~~~dg~I~i~ 417 (545)
....+. + . .++.+..++.+..+|+++++.+........ + ..+.-+| .++.+++++.+|.++.|
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111222 2 2 455777789999999999987765432111 0 0010011 35788888999999999
Q ss_pred ECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEE
Q 009059 418 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 418 d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~ 495 (545)
|.++++.+...... ....... .+..|++++ +|.|..+|..+++ .+...... .....+... .+..|++++
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEe
Confidence 99999887765521 1122222 355566666 8999999998873 33332111 111222222 356799999
Q ss_pred cCCeEEEEeCCCCeEE-EeccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 CYETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 ~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|.|+++|..+++.+ .+..+...+. ...+. + +.|+.++.||.|..|.
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 9999999999999988 5554544333 33333 3 4588899999998763
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-08 Score=99.47 Aligned_cols=258 Identities=10% Similarity=0.098 Sum_probs=158.6
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEeccCC----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT---- 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~----------dg~I~lwd~~~~~~~~~l~~h~---- 305 (545)
..+.+.|..++.....+.. -..+- .+ ++|||+.|+++.. +..|.+||..+++.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~---G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG---GFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEc---cCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 4456666666554444332 22222 24 9999998877765 6899999999999998886422
Q ss_pred ---ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 306 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 306 ---~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.....++++|||++|++... +..|.+.|+.+++. +..+.- .+...-....++ ..++ -| .||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~ 176 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGT 176 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecC
Confidence 23347899999999998763 68999999998876 444332 111111122221 2221 22 244444433322
Q ss_pred -Ccee-eE---Eecc-CCe-eEEEEeC-CCCEEEEEECCCeEEEEECCCC-----EEEEEecC-------CCCCEEEEEE
Q 009059 381 -GSCA-GV---FKCQ-SGA-TQMRFQP-RLGRILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCW 440 (545)
Q Consensus 381 -~~~~-~~---~~~~-~~v-~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~-------h~~~I~~l~~ 440 (545)
++.. .. +... ..+ ..-.|.+ ++.++++... |.|++.|+... .....+.. ..+.+.-+++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 1111 11 1110 000 0114466 6555555555 99999996432 22222211 2233445999
Q ss_pred cCCCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCC
Q 009059 441 NTSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTE 507 (545)
Q Consensus 441 sp~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~ 507 (545)
+++++.+++.. .+.|.++|..+. +.+..+.. +..+..++++|+++ +|++.. .++.|.++|..+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99998888742 248999999887 55655553 56899999999999 777676 467899999999
Q ss_pred CeEEE
Q 009059 508 NKTLT 512 (545)
Q Consensus 508 ~~~~~ 512 (545)
++.+.
T Consensus 332 ~k~i~ 336 (352)
T TIGR02658 332 GKELS 336 (352)
T ss_pred CeEEe
Confidence 98873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-10 Score=110.36 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=187.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--------------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 327 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg-------------- 327 (545)
-.-++..++|||.|.+|++.... .|.+|..+.+..+..+. | ..|..+.|+|+++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45578889999999999987654 68999988877665554 4 3589999999999999965533
Q ss_pred -eEEEEECCCCCeeeeEeccCccc--EE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEe--ccCCeeEEEEeC
Q 009059 328 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQP 400 (545)
Q Consensus 328 -~I~vwd~~~~~~~~~~~~~h~~~--V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~--~~~~v~~l~~sp 400 (545)
.+.+||+.++.. +..+.....+ .+ -+.|+-+..+++-. ....++++++ +.... ..+. ...++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998764 6666665554 55 67787775544333 2456999997 33221 1111 125688888998
Q ss_pred CCC--EEEEE-----ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe------------CCcEEEEEcC
Q 009059 401 RLG--RILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 461 (545)
Q Consensus 401 ~~~--~l~~~-----~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s------------dg~I~vwd~~ 461 (545)
.++ .|+.- ...+.+++|.+..+..+.+..-....=..+.|.+.|++|++-- +..++++++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 643 23332 2467899999987666554332333345688999998877532 2467888886
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc--CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 538 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D- 538 (545)
.. .+ .......++|...+|.|.++.+++++. .-.+.++|++.+ +.+......=+.+.|+|.+++++.++-|
T Consensus 264 e~---~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER---SI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc---cc-ceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 33 22 222245789999999999988777763 448999999988 4344445556678899999999988876
Q ss_pred --CcEEEcC
Q 009059 539 --KCVKIWK 545 (545)
Q Consensus 539 --g~I~iWd 545 (545)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5577765
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=107.57 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=152.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-eee
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD-YSL 341 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~-~~~ 341 (545)
..++.|++.+..++++-.+|.+.+-+.....+. ..++.|.-+++...|+. +.+++++|+.|+.+..||++.++ ...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457889999999999999999996665554444 47899999999999976 45689999999999999999444 333
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEeccCCeeEEEEeCCC-CEEEEEECCCeEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV 419 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~ 419 (545)
....-|...|.+|.-+|.....+++|+.|-.|++||.+ -++++..-...++|..+..+|.- ..+++++.-+..+|.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 34667899999999999888899999999999999998 57888777777899999999853 34556666666677776
Q ss_pred CCC--E---EEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEE-EEEcCCC
Q 009059 420 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 463 (545)
Q Consensus 420 ~~~--~---~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~-vwd~~~~ 463 (545)
..+ + .....+.|.+-...-.|.....+|++++ |+.++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 654 2 3344556777777777765567888877 77755 7765443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-09 Score=105.25 Aligned_cols=254 Identities=13% Similarity=0.069 Sum_probs=160.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+..+++++.++.|..+|..+|+.+............+.. ++..++.++.++.+..+|..+++. +..... .+.+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKE-LWRAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcE-eeeecc-CceeecC
Confidence 568888888999999999999998776544332222332 467888888999999999988876 333221 2222221
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE------EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ------MRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~------l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
-... +..+ +.+..++.|+.||.++++.+..+........ ..+. ++.++++..++.+..+|+++++.+...
T Consensus 141 p~v~-~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLVA-NGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEEE-CCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 2344 4666799999999999998887765433211 1121 357788888999999999999876543
Q ss_pred cCCCC----C---EEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 429 QGHKN----Q---VHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 429 ~~h~~----~---I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
..... . +..+.-+| .+..+++++ ++.++.||..+++ .+..... ....... ..+..+++++.++
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~--~~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA--SSYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc--CCccCce--EeCCEEEEECCCC
Confidence 31100 0 00010011 234555555 9999999998873 3333321 1111122 2456788889999
Q ss_pred eEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|+.+|..+++.+ ..... ......... .+..|++++.||.|.+||
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999876 33221 112222222 366888999999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-10 Score=106.12 Aligned_cols=238 Identities=18% Similarity=0.324 Sum_probs=163.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccCC------------ccEEEEEEcCCC--CEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h~------------~~V~~l~~sp~~--~~l~t~ 323 (545)
.+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4569999999999999999999999999755322 223344443 358888887653 356667
Q ss_pred eCCCeEEEEECCCCCe-----------------------------------------eeeEe-ccCcccEEEEEEeCCCC
Q 009059 324 SADRTVRVWDTENPDY-----------------------------------------SLRTF-TGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~-----------------------------------------~~~~~-~~h~~~V~~l~~~p~~~ 361 (545)
+.|.+|++|.+..... +.+.+ ..|...|.++.|+.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7999999998764310 01112 35777889999998876
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeE---Eec------cCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEE------E
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGV---FKC------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVC------R 425 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~---~~~------~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~------~ 425 (545)
.++ +++ |=.|.+|++.-..-... ++. ..-|++..|+|. ...+...+..|.|++-|++.... +
T Consensus 186 t~l-SaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 554 77899999864322111 111 123788899995 45677788899999999984321 1
Q ss_pred E--E--------ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC------------Cce---E
Q 009059 426 L--K--------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---H 480 (545)
Q Consensus 426 ~--~--------~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~------------~~v---~ 480 (545)
. . +.+-...|..+.|+++|+|+++-.--+|+|||++..+ .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 1 1122347889999999999998887899999998764 4555554332 222 4
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+.|+.+.+.+++|+.....-+|-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 577888888888888877666665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-09 Score=106.04 Aligned_cols=227 Identities=12% Similarity=0.066 Sum_probs=149.3
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~-l~t~s~d---g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 360 (545)
..|.+-|.+.........+ . .+....|+|||+. ++..+.+ ..|.++|+.+++. +.+....+......|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 3556656554443333333 3 7788999999984 6654443 4688899987653 3333355667778899999
Q ss_pred CcEEEEEcCC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCE
Q 009059 361 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 361 ~~ll~s~s~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
..++++.+.+ ..|+++|+.+++...............|+|+|+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888776654 46888898887755443333334567899999988887752 2 789999988766443321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEE
Q 009059 436 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 502 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-d-------g--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~i 502 (545)
...|+|+|++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+.....+ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999888776 2 2 578888877632 222222 2233578999999888777654 5888
Q ss_pred EeCCCCeEEEeccCCCCeeEE
Q 009059 503 WNMTENKTLTLSAHDKLVSSL 523 (545)
Q Consensus 503 wd~~~~~~~~~~~h~~~V~~l 523 (545)
+++.......+....+.+...
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred EecCCCeeEEeecCCCccCCC
Confidence 888887666555444444443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=110.20 Aligned_cols=187 Identities=19% Similarity=0.306 Sum_probs=150.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEec---cCcccEEEEEEe------C-------------CCCcEEEEEcCCCc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFH------P-------------SKEDLLCSCDNNSE 372 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~---~h~~~V~~l~~~------p-------------~~~~ll~s~s~dg~ 372 (545)
|...|+|....||.+++|+...++. ...|. .-++..++..|. | .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4567899999999999999987764 33332 123444455442 1 13456777888999
Q ss_pred EEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 373 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
|.+|++..++....+. +.+.+.++.++.+-+.|.+++.|+.+..|+......++.+......+.+++.+|||..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999988876 5567999999999999999999999999999999999999999999999999999998887
Q ss_pred EeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC-----CCEEEEEEc-CCeEEEEeCC
Q 009059 450 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 450 ~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~-----~~~l~~~~~-dg~I~iwd~~ 506 (545)
++ +.|++||+.+. +.+..+.+|.++|+++.|.-+ |.+++++.. +..+.+|-+.
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 64 57999999887 889999999999999999877 666665544 4466777553
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-10 Score=101.35 Aligned_cols=231 Identities=11% Similarity=0.072 Sum_probs=158.6
Q ss_pred CeEEEEEcC---CCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCC------ccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 265 KVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 265 ~V~~l~~sp---dg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~------~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+..+.|.. +|. .|+-+..+|.|.+|..........+++-. ....++.|++.+..++++..+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 345555543 455 46667778999999876544444443211 12457788998999999999999986555
Q ss_pred CCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeE--EeccCCeeEEEEeCC-CCEEEEEE
Q 009059 335 ENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILAAA 409 (545)
Q Consensus 335 ~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~--~~~~~~v~~l~~sp~-~~~l~~~~ 409 (545)
..... .++.++.|.-+++...|+....+++++|+.|+.+..||++ .++.+.. ..+..+|.++.-+|. ..++++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 44332 2457889999999999998888999999999999999999 3444432 346678888888774 56788999
Q ss_pred CCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCcEEEEEcCCCCCc--ceEEEEeeCCCceEEEEE
Q 009059 410 IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 410 ~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g--~~l~s~sdg~I~vwd~~~~~~~--~~i~~~~~~~~~v~~~~~ 484 (545)
.|..|++||.++ ++++..-. -.+.|..+.++|.- ++|+++--+-.+|.+....... ......+.|..-+..-.|
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred cccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence 999999999994 56655443 45889999999854 3455555444666666554321 133444556665666666
Q ss_pred cCCCCEEEEEEc
Q 009059 485 HPTFPSLLVIGC 496 (545)
Q Consensus 485 sp~~~~l~~~~~ 496 (545)
.....+|++++.
T Consensus 310 d~~~~~lATCsF 321 (339)
T KOG0280|consen 310 DSKDSFLATCSF 321 (339)
T ss_pred ccccceeeeeec
Confidence 444455666553
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-10 Score=118.04 Aligned_cols=196 Identities=14% Similarity=0.208 Sum_probs=155.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
.+.|....+.-+.+.++.+..++.+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 344555666677888999999999999999887776665433222 1223346677799999999999999998544
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee--EEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.+ ..+.+|.+.|..+.|+.+|. +++++++|.++++|++.+.+... .|.+...+..++|.|+ .+++++.|-+.++
T Consensus 167 ~p-~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KP-IRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred Cc-ceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 43 36889999999999999975 55599999999999999988765 5667788999999997 8999999999999
Q ss_pred EECCCCEEEEEecCCC-CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 417 LDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
|+.+... ...+.+|. ..|..++..++...++++. |+.+++|++...
T Consensus 243 W~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9765443 33666665 4789999998888888888 999999998654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-08 Score=110.57 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=184.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE----EcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lw----d~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~- 335 (545)
...+.|.++.|-++...|+.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+..-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544432 22223345779999999999999999999988876432
Q ss_pred -----------C-CC-ee--------eeEecc------------------------CcccEEEEEEeCCCCcEEEEEc--
Q 009059 336 -----------N-PD-YS--------LRTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 368 (545)
Q Consensus 336 -----------~-~~-~~--------~~~~~~------------------------h~~~V~~l~~~p~~~~ll~s~s-- 368 (545)
. +. .. -..|.| +...-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 00 001100 2334567889999877665543
Q ss_pred C---CCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEEC---CCeEEEEECCCC---EEEEEecCCCCCEEEE
Q 009059 369 N---NSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI---ENYISILDVETQ---VCRLKLQGHKNQVHSV 438 (545)
Q Consensus 369 ~---dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~~~---~~~~~~~~h~~~I~~l 438 (545)
. -..|++|+-+ |....+.+.- +--..++|.|.|+.|++.-. ...|.+|+-+.. +....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2579999976 6554444322 22457899999988877765 345666664432 2122222355689999
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCE-EEEEEcCCeEEEEeC----CCC----
Q 009059 439 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 508 (545)
Q Consensus 439 ~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~----~~~---- 508 (545)
.|++++.+||....+.|.+|-..+.. ...-+++.. ....+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 99999999999886679999987642 122223332 2233455899996643 556665565544332 211
Q ss_pred -----eEEEe-----------------------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 -----KTLTL-----------------------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 -----~~~~~-----------------------~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
....+ ......|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 00010 12346799999999998899999999998874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-08 Score=98.25 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=185.9
Q ss_pred ceeeeeecCC-ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCc--cEEEEEEcC
Q 009059 240 RVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQ--WITDVRFSP 315 (545)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~--~V~~l~~sp 315 (545)
...++|-... |..|+.+-.+.+|-.. --+-. ++..+....||.=.||.++ .|+-+ +.|+. .-.+=..+.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~---PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~ns 276 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSS---PMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANS 276 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCC---ceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCC
Confidence 3567786544 4588888888887443 22222 2333334556655555443 22222 22332 122333456
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEec-c------Cc---ccEEEEE-EeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFT-G------HS---TTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-~------h~---~~V~~l~-~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
||+.++.. ..|.|.+||.++.......+. . .. .+..-+. |++-...+++..+ .|...+.+...+-.+
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence 88887765 567899999887653211111 0 00 1111111 4443345555555 677777776655444
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-cEEEEEcCC
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGS 462 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg-~I~vwd~~~ 462 (545)
. +....+|.-..+..+...++.|..|| .|-|||.++++... +...-+.|.++..+++|++++++.|. .|.+.|+.+
T Consensus 355 q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 355 Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 3 34445688888888888899999998 89999999987544 45567899999999999999999855 899999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC----eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+.. ...-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|.--+
T Consensus 433 gnv---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 433 GNV---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCe---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 842 222233457799999999999999988777 89999999999885554445556678999999876544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-10 Score=105.25 Aligned_cols=228 Identities=18% Similarity=0.235 Sum_probs=148.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe----eeeEeccC------------cccEEEEEEeCCCCc-EEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGH------------STTVMSLDFHPSKED-LLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~----~~~~~~~h------------~~~V~~l~~~p~~~~-ll~s~ 367 (545)
.+-|.+|.|...|.+|+||..+|.|.++.-+.... ....+..| ...|..+.|.++++. .+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45689999999999999999999999997553221 12233333 346888999876543 34456
Q ss_pred cCCCcEEEEECCCCceee-E--Ee---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEE
Q 009059 368 DNNSEIRYWSINNGSCAG-V--FK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCW 440 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~-~--~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~ 440 (545)
..|.+|++|.+....... . +. ....++.+..- +.+..+-.+. ..+.+.+ .+|...|++|.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceee------eeeeeeccccceeEeeeeee
Confidence 679999999987543322 0 00 01112222110 0111111110 1122222 358889999999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC-----CceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE---
Q 009059 441 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL--- 511 (545)
Q Consensus 441 sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~--- 511 (545)
+.|+..++++.|=.|.+|++.-....--+..++.+. .-|++..|+|.. +.++..++.|+|++-|++...+.
T Consensus 173 NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 173 NSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 999999999989999999987654333344444443 347888999965 56777888899999999843221
Q ss_pred ----Ee----------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 ----TL----------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 ----~~----------~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.. ..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 11 011245888999999999998765 5899997
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-08 Score=114.44 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEecc--------------CCccEEEEEEcCCCCEEEEEeC-CCeEE
Q 009059 267 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE--------------HTQWITDVRFSPSLSRLATSSA-DRTVR 330 (545)
Q Consensus 267 ~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~--------------h~~~V~~l~~sp~~~~l~t~s~-dg~I~ 330 (545)
..++++++ +.++++-..++.|++||... ..+..+.+ +-.....|++.+++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 55667767788999999764 44433322 1123578999998887666654 56899
Q ss_pred EEECCCCCeeeeEeccC-----------------cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----
Q 009059 331 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 388 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h-----------------~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----- 388 (545)
++|+.++. +.++.+- -.....++|+|++..++++...++.|++||..++.......
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987654 3333210 12346899999767788788888999999998765432110
Q ss_pred ----------ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC-------------C--------CCCEE
Q 009059 389 ----------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 436 (545)
Q Consensus 389 ----------~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-------------h--------~~~I~ 436 (545)
.-.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0123567999999886666654 68999999987653221100 0 11346
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--------------CCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 437 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
.++++++|.++++-. ++.|++||..++. .. .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777766 7899999987652 22 2211 123567899999999777777788999
Q ss_pred EEeCCCCeE
Q 009059 502 LWNMTENKT 510 (545)
Q Consensus 502 iwd~~~~~~ 510 (545)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-08 Score=115.42 Aligned_cols=232 Identities=10% Similarity=0.111 Sum_probs=156.0
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEecc--------------CcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 309 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--------------HSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 309 ~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~--------------h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
..+++++. +.++++-+.++.|++||... .. +..+.+ .-.....+++.++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 45788764 55666767788999999864 33 222221 112357899998876666555556789
Q ss_pred EEEECCCCceeeEEec------------------cCCeeEEEEeCCCCEEEE-EECCCeEEEEECCCCEEEEEecCC---
Q 009059 374 RYWSINNGSCAGVFKC------------------QSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGH--- 431 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~------------------~~~v~~l~~sp~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h--- 431 (545)
+++|+.++.. .++.. -.....++++|+++.+++ ...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 9999877653 22211 113467999996555554 4567899999998875432 2111
Q ss_pred ------------CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE-----------EEee--------CCCc
Q 009059 432 ------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNK 478 (545)
Q Consensus 432 ------------~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~-----------~~~~--------~~~~ 478 (545)
-.....|+++|++..|+++. ++.|++||+.++.. ..+. .+.. ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccC
Confidence 12456799999998666555 67999999986532 1110 0000 0113
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC--------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h--------------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
...++++++|..+++-..++.|++||..++....+.+. -.....|+++++|+++++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46889999998777777788999999998877654332 1357889999999998888899999999
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=104.56 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=134.3
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc-EEEEEcC--CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-ll~s~s~--dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
.|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+|++..
T Consensus 170 ~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 45555554322 33333333 7889999999986 4433332 45799999998887666655555677889999988
Q ss_pred EEEEEC---CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg----~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++.... + ... ..
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~--g~ 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFH--GK 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccC--CC
Confidence 876543 357999999887643 344344334456899999988877733 78888887764311 1 111 11
Q ss_pred ceEEEEEcCCCCEEEEEEcC---------CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~d---------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
....|+|+|++|+..... ..|++.|+.++....+... .......|+|||+.|+....+
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 124899999998887754 2788999988877655543 233468899999987766544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-08 Score=102.03 Aligned_cols=270 Identities=17% Similarity=0.218 Sum_probs=183.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-----------CCeEEEEECC
Q 009059 267 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 335 (545)
Q Consensus 267 ~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-----------dg~I~vwd~~ 335 (545)
+-+.|||-|.||+|-..- -|.+|--++...++.+. |.+ |.-+.|||+.+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 458999999999998654 58899888877777775 654 888999999999999653 2579999999
Q ss_pred CCCeeeeEecc--CcccEE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFTG--HSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~~--h~~~V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++.. .+.|.. ....++ -..|+.|++++.... ...|.||+.....++..-. .-.+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9875 555543 222233 457888876555333 3569999877644332211 22578899999997777665432
Q ss_pred -----CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----------cEEEEEcCCCCCcceEEEEeeC
Q 009059 412 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 412 -----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg-----------~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
..+.+..+.+++.+++..-+.-.=..+.|-.+|.||+.--|. .+.|+.++..... +... ..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp--ve~v-el 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP--VEVV-EL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC--ceee-ec
Confidence 367788888887777665554444567888899999875422 3556666544321 2111 23
Q ss_pred CCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCC-eEEEe--ccCCCCeeEEEEeCCCCEEEEEeC---CCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTEN-KTLTL--SAHDKLVSSLAASTVNGMVASASH---DKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~-~~~~~--~~h~~~V~~l~~spd~~~las~s~---Dg~I~iWd 545 (545)
...|...+|-|.|..+++.+... ++.+|.+++. ....+ .-.....+.+.|+|.|++++.+.. .|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56788999999998877776543 8889988742 22111 112255788999999999887653 46666654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=117.47 Aligned_cols=279 Identities=18% Similarity=0.329 Sum_probs=190.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEecc-CCccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCC-
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD- 338 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~-h~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~- 338 (545)
+.+.++.++|.|+-+|.++.-| +.+-|+. .+.+.+-+.. ..-.|-.+.|++. -.+-++......-.+|++....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 4577899999999999998765 4455554 3333333321 1234667788774 3344444455567789875432
Q ss_pred -eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 339 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 339 -~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
..-..+.+|...|+.+.|+|....++++|+.|..+..||++... .+..+ .-+.....++|+.....+++.+..+.|.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 22346678999999999999999999999999999999998754 23322 3346688999999888999999999999
Q ss_pred EEECCCC-EEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 416 ILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 416 i~d~~~~-~~~~~~~~h~~~I~~l~~sp~--g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
+||++.+ .++..+++|...|+.+.|..- +..+.+..|++|+.||...... +. ........+|..-.+.|-|.-.+
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~-e~-~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT-ES-KRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc-cc-ceeccccCcceeccccccCceeE
Confidence 9999975 678889999999999998653 3344444499999999876532 11 11222345666666666554322
Q ss_pred EEEcCC--eEE---------EEeCCCC-eEE-EeccCCCCeeEEEEeCCC--------C--EEEEEeCCCcEEEcC
Q 009059 493 VIGCYE--TLE---------LWNMTEN-KTL-TLSAHDKLVSSLAASTVN--------G--MVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg--~I~---------iwd~~~~-~~~-~~~~h~~~V~~l~~spd~--------~--~las~s~Dg~I~iWd 545 (545)
+--..| .+. .|+..++ ..+ ++.+|...|....|-..+ + .|+|-+.|..+++|.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 221111 333 3444333 233 788999988777664322 2 799999999999993
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=104.65 Aligned_cols=245 Identities=13% Similarity=0.201 Sum_probs=175.0
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.++..+++|.+.|++...-|...-+++.+.|.+++||--.+ +++-......-..++.++.+.++.. .|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 34567789999999999999888899999999999996443 3321222233456799999998854 555888899998
Q ss_pred EEECCCC----ceee-EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 375 YWSINNG----SCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 375 lwd~~~~----~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
-+.+... ...+ ...+...+..+.|+-...++++.+.|..+.-.-.+.+..+-.+.- ....+++.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEe
Confidence 8876432 2222 223556688888888878888888888776555555433221110 001111111111 3444
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEe
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAS 526 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~s 526 (545)
|. .|.|.+..+... ....+.++.+|...+.++.|.+....|+++..|..+.+||+-.++-. .+.+|...|..+...
T Consensus 171 Gd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 44 555555554432 23678889999999999999999999999999999999999766555 778999999999988
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 009059 527 TVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 527 pd~~~las~s~Dg~I~iWd 545 (545)
+--+.|.+++.||.|.+|+
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 8889999999999999996
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=128.47 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=165.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCee
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT 394 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~ 394 (545)
+..+.....++...-|..+.... ..+.+-..|.++.-+|....++ +|+.||.|++|....+..+..+.. ...++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 34455555566666666554332 2333556788888899876666 999999999999988888877764 35688
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~ 470 (545)
.+.|+.+|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++++ ++.+.+||.--.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 99999999999999999999999988 667777888999999888865 5555554 4499999987655556666
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+|...++++++.|....|++|+.+|.|++||++..+.+ .+.. +. ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887765 3322 44 567999999999999996
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=128.80 Aligned_cols=180 Identities=22% Similarity=0.297 Sum_probs=147.2
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.++.|..++.|.|..+..+...++.-. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....+++|-
T Consensus 2225 tgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2225 TGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred ecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeee
Confidence 456789999999999988777766544 889999999999999999999999999987 46777788999999999997
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC
Q 009059 315 PSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391 (545)
Q Consensus 315 p~~~~l~t~s---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~ 391 (545)
. ..+++++ .++.+.+||..-.......-..|.+.++++++-|.. .++++|+.+|.|++||++..+.++.+..
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~-- 2376 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA-- 2376 (2439)
T ss_pred e--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh--
Confidence 5 6777764 478999999754332222337899999999999984 6777999999999999998888777763
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
+. ...+++.+...|.++||++..-..++++.
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 33 44788999999999999998876666554
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-09 Score=106.26 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=172.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC------------CEEEEEeCCCeEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW 332 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~------------~~l~t~s~dg~I~vw 332 (545)
.-.++.|+|.| +||.|+. ..|.|-|..+.+.+..++.|...|+.++|.|.. -+||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678999887 8888875 588999999999999999999999999998731 257778888999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCC---CCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeC-CCCEEEE
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRILA 407 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp-~~~~l~~ 407 (545)
|...... +..+..|..++..++|.+. ..++++.-....+|.+|+..+|+....+..... ..|+.+.| +...+.+
T Consensus 95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9987664 6677888899999999763 335665666678999999999999887775544 45688888 4456666
Q ss_pred EECCCeEEEEECCC-------CEEEEEecCCCC----------------C---------EEEEEEcCCCCEEE-EEeCCc
Q 009059 408 AAIENYISILDVET-------QVCRLKLQGHKN----------------Q---------VHSVCWNTSGEYLA-SVSDEL 454 (545)
Q Consensus 408 ~~~dg~I~i~d~~~-------~~~~~~~~~h~~----------------~---------I~~l~~sp~g~~l~-s~sdg~ 454 (545)
.+..|.|.+.+.-. ++....-..|.+ . ...++|+|.-+.++ ......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778777766421 222222222221 0 11245677655444 444888
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC--CEEEEEEcCCeEEEEeCCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~--~~l~~~~~dg~I~iwd~~~ 507 (545)
+.|+|++-. .++.......+.+.-+.+-|+. ..|++.-.+|.+.||-.+.
T Consensus 254 llv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999999765 6676666666666666666655 5799999999999996654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-06 Score=84.41 Aligned_cols=218 Identities=14% Similarity=0.177 Sum_probs=146.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCeee-eEe
Q 009059 268 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSL-RTF 344 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s-p~~~~l~t~s~dg~I~vwd~~~~~~~~-~~~ 344 (545)
+++|.+ ++.++++--..+.|..|+..+++....-. .. ...+++. +++ .|+.+..++ +.++|..+++... ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 77777777778999999998876654222 22 6677777 564 555555554 5566988765422 122
Q ss_pred c--c-CcccEEEEEEeCCCCcEEEEEcCC--------CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCC
Q 009059 345 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 412 (545)
Q Consensus 345 ~--~-h~~~V~~l~~~p~~~~ll~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg 412 (545)
. . .....+.+++.++|. +.++.... |.|..++.. ++.......-...+.++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 1 345788999999986 55454322 568888887 66655555556788999999998887655 478
Q ss_pred eEEEEECCC--C-----EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 413 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 413 ~I~i~d~~~--~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
.|..|++.. . +....+....+..-.+++..+|++.++.. .+.|.+++.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 11222333333588999999999887766 7899999976 4 566666655568999999
Q ss_pred -cCCCCEEEEEEc
Q 009059 485 -HPTFPSLLVIGC 496 (545)
Q Consensus 485 -sp~~~~l~~~~~ 496 (545)
-++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 467677776553
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-08 Score=102.26 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=152.4
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCC------------CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC---C
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDG------------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---S 316 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg------------~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp---~ 316 (545)
.++.++.+..|...|+.+.|.|-. -+||++...|.|.|||...+..+..+..|.++|.+++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 345678888999999999998831 2577888889999999999999999999999999999976 3
Q ss_pred C-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-------CceeeEEe
Q 009059 317 L-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK 388 (545)
Q Consensus 317 ~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~ 388 (545)
. ..|+.-....+|.+|+..+++. +..+........|+.+.|-...-++.-+..|.+.+-+.-. ++......
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4667777788999999999886 5555555567778998886555555555567666655421 11111110
Q ss_pred c-cC-----------------C--------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 389 C-QS-----------------G--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 389 ~-~~-----------------~--------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
. .. + ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 0 00 0 12467888878888888899999999998888877766677777777777
Q ss_pred CC--CEEEEEe-CCcEEEEEcCC
Q 009059 443 SG--EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 443 ~g--~~l~s~s-dg~I~vwd~~~ 462 (545)
++ ..|++.. ||.+.+|-.+.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeec
Confidence 65 4666666 88888886543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-10 Score=114.56 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=151.9
Q ss_pred EEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
-..+.+|...|+.+.|.|. ...||+++.|-.|..||+.+- ..+..+..-......|+|+-....+++.+..+.|++||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 3467899999999999994 458999999999999999864 34455554455667899987555566666778899999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccCCeeEEEEeCCCCEEEEEE--
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA-- 409 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~~~~-- 409 (545)
++.+..++..+++|...|+.++|+.-....+.+++.||+|++||..... ..+......++..-++.|-|.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999988999999999999999987666677799999999999987543 334444455666666666443322221
Q ss_pred CCCeEEEEE---------CCC-CEEEEEecCCCCCEEEEEEcCCC----------CEEEEEe-CCcEEEEEcCC
Q 009059 410 IENYISILD---------VET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 410 ~dg~I~i~d---------~~~-~~~~~~~~~h~~~I~~l~~sp~g----------~~l~s~s-dg~I~vwd~~~ 462 (545)
.+..+.+++ ..+ ..+++.|.||.+.|....|-..+ -.|++-+ |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122333333 332 36789999999988777774322 2577777 99999998764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-07 Score=85.50 Aligned_cols=216 Identities=7% Similarity=0.020 Sum_probs=142.9
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe-CCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 309 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 309 ~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.++.|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3578888 66666676678999999998765422 22222 7778888 55 4555 4443 4466679998876655
Q ss_pred Eec------cCCeeEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 387 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 387 ~~~------~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
... ....+.+++.++|+.+++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 543 1237889999998866655533 568888888 55444333 345679999999999887665
Q ss_pred -CCcEEEEEcCCCCC-c---ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE
Q 009059 452 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 452 -dg~I~vwd~~~~~~-~---~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 525 (545)
.+.|..|++..... . ..+..+.......-.+++..+|+..++....+.|.++|.+ ++.+ .+.-....+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 67899999864322 1 1222233323357889999999977777778899999988 6655 34433458999999
Q ss_pred e-CCCCEEEE
Q 009059 526 S-TVNGMVAS 534 (545)
Q Consensus 526 s-pd~~~las 534 (545)
. ++.+.|..
T Consensus 233 gg~~~~~L~v 242 (246)
T PF08450_consen 233 GGPDGKTLYV 242 (246)
T ss_dssp ESTTSSEEEE
T ss_pred ECCCCCEEEE
Confidence 4 66555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-08 Score=95.24 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=118.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg-~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
-+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++... +...-+.|.++..+++|++++.+.....|-+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 36888899999999999999999999 99999998876554 44566789999999999999999988999999999987
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
. ...-+...+-|+.++|+|++..+. -+--+ ..|+++|+.+++..........-.+-+|.|++++|..-+
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e-eEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 5 333344567899999999976554 44334 469999999988777666556667788999998877655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=107.69 Aligned_cols=231 Identities=14% Similarity=0.185 Sum_probs=167.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--------------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--------------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
....|++|+.+..++++|+.||.++|..+.+... .-+++.||.+.|.-+.|+.+... +.+.+.+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCc
Confidence 4578999999999999999999999998764321 12467899999999999987554 44888999
Q ss_pred cEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEE
Q 009059 372 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l 447 (545)
-|.+|-+-.+....... ..+-|.+++|+.+|..+..+..||.|.+=.++..+.- +.+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 99999998776554332 2345889999999999999999999988877654432 12222 234578899999887
Q ss_pred EEEe-CCcEEEEEcCCCCC----cceEEE----EeeCCCceEEEEE--------cCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 448 ASVS-DELVRVWSIGSGSK----GECIHE----LSCTGNKFHSCVF--------HPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~----~~~i~~----~~~~~~~v~~~~~--------sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
..+- .|.+.+||....-. ..|... +......+..+.| -|+.+.|+++-..|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 7777 88999999754211 122111 1122233555555 35788899999999888775544333
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 511 LTLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
..+....-.|....|+++|..||.+|.|.
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCcc
Confidence 33333446788999999999999998763
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-08 Score=89.24 Aligned_cols=249 Identities=9% Similarity=0.020 Sum_probs=163.5
Q ss_pred CCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 283 HDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 283 ~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp-----~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
....|-+|++-+.. .+... ..+.|.| ...+||.|+..|...+|...+..........|...|+-+.
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34456677665432 11111 3345554 3458999999999999999876654555444544443322
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEE-EecCC
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV--CRL-KLQGH 431 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~-~~~~h 431 (545)
-.-+...-+..++.|.++++.++..+......... -...++.+++++.++++.+....|..|.+.... .+. .....
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 22222333447788999999988755443333222 237889999999999999999999999887542 222 23334
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc--eEEEEeeCCCceEEEEEcCCCC--EEEEEEcCCeEEEEeCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMT 506 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~--~i~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~I~iwd~~ 506 (545)
.+.-.+..|+.....+|++. ||.+.|||++...... ...+-..|.+.++.|.|++.|. .|+..-.-+.+.+.|++
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 55667889999999999999 9999999998753221 1222345788999999998774 35555555689999999
Q ss_pred CCeEEE--------eccCC-CCeeEEEEeCCCCEEEEEeCC
Q 009059 507 ENKTLT--------LSAHD-KLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 507 ~~~~~~--------~~~h~-~~V~~l~~spd~~~las~s~D 538 (545)
+++... ...|. ..|..-.|+.++..+.+.+++
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 886541 12233 337778888777655555443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-07 Score=87.05 Aligned_cols=215 Identities=12% Similarity=0.016 Sum_probs=137.1
Q ss_pred CCcEEEEEcCCCeEEEEeccC--CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE-EEEeCCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS-LDFHPSK 360 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~-l~~~p~~ 360 (545)
+|.|..||..+++.+....-- .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+.. .... +
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~--~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD--G 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE--T
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec--c
Confidence 688999999999999777431 1222221 223566788888999999999998876 433332 111111 2222 2
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEE-eccC----CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC-
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ- 434 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~----~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~- 434 (545)
..++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++|+.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 3444 5556789999999999999884 3221 1222333333788999999999999999999998887664322
Q ss_pred ---------EEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 435 ---------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 435 ---------I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
+..-....++ .++.+. ++.+..+|+.++ ..+.... ...+.. .....+..|++++.++.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222333345 555555 775444499887 3332222 222222 2456777788888999999999
Q ss_pred CCCCeEE
Q 009059 505 MTENKTL 511 (545)
Q Consensus 505 ~~~~~~~ 511 (545)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
|
... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=106.03 Aligned_cols=207 Identities=14% Similarity=0.260 Sum_probs=146.9
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
+..+.+|...|..++--.+.+-+++++.|++|++|.++... .+..++..|+.+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35677999999999888888899999999999999987432 24568889999999999998743 44455 89
Q ss_pred cEEEEECCCCceeeEEe---ccCCeeEEEEeC--CCCEEEEE-ECCCeEEEEECCCCEEEEEec-----CCCCCEEEEEE
Q 009059 372 EIRYWSINNGSCAGVFK---CQSGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 440 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp--~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~ 440 (545)
.|.+||.--++.+.... .++.+..+...+ +...++++ +.+.+|+++|.+...-...++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987777665332 122333343333 33344455 458899999999876555443 34567899999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE-EeCCCCeEE
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL 511 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i-wd~~~~~~~ 511 (545)
.+.|++++++- .|+|.+.|.+++ ..+..+.........++ .|....|+....|.++.+ |-...+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 99999999887 999999999998 44444433332222222 345556777777888888 876665443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-07 Score=91.97 Aligned_cols=254 Identities=11% Similarity=0.023 Sum_probs=155.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE---
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 351 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V--- 351 (545)
+..++.++.++.++.+|.++|+.+............... .+..++.+..++.|..+|..+++. +..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCccccc
Confidence 456777888999999999999998776543321111122 244677788899999999998876 33332211000
Q ss_pred --EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--------eeEEEEeC--CCCEEEEEECCCeEEEEEC
Q 009059 352 --MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 419 (545)
Q Consensus 352 --~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--------v~~l~~sp--~~~~l~~~~~dg~I~i~d~ 419 (545)
...... +.. ++.+..+|.+..+|..+++.+........ ...+..+| .++.+++++.+|.++.+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 123 44667789999999999987766543211 00111122 3577888889999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.+++.+...... ....+.. .+..|+.++ ++.+..+|..+++ .+-..... .....+..+ .+..|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999877654321 1112222 344455555 8999999998873 22221111 111122222 24568899999
Q ss_pred CeEEEEeCCCCeEE-EeccCCCCee-EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 498 ETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 498 g~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.|+++|..+++.+ ...-....+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999887 3332222232 2223 245788889999988763
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-09 Score=96.34 Aligned_cols=232 Identities=18% Similarity=0.258 Sum_probs=148.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eeEeccCc------------ccEEEEEEeCC-CCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~------------~~V~~l~~~p~-~~~ll~s~ 367 (545)
...|+++.|...|.||++|...|.|.+|.-+....+ +..+.+|. ..|..|.|..+ +..-+...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 456999999999999999999999999987643311 12344443 46788888654 33344466
Q ss_pred cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE---------CCCeEEEEECCCCEEEEE-ecCCCCCEEE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLK-LQGHKNQVHS 437 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~---------~dg~I~i~d~~~~~~~~~-~~~h~~~I~~ 437 (545)
..|.+|++|.+......-.-. .....---+|.++-+.+.. .|..|... +.+. -..|...|++
T Consensus 106 tNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiNS 177 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHINS 177 (460)
T ss_pred cCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEeee
Confidence 679999999997543211111 1111111111111111000 01111111 1111 2458888999
Q ss_pred EEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCC-----CceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE
Q 009059 438 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 438 l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~-----~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+.|..|...++++.|-.|.+|++.-....-.+..++.|. .-|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999888899999987654334445555554 347888999965 45667778899999999843211
Q ss_pred ---------Eec--------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 ---------TLS--------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 ---------~~~--------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+. .-...|..+.|+++|+|+++-+. -+|+|||
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 111 12356888999999999988765 5799997
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-06 Score=81.65 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=133.1
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEE---eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKST---LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~---l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
++.+.||++||.- .|..|.|=..+.. ..+.. .+...-.=.-++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 6778899999876 4777877654431 11122 22233345779999999999999999999999998532 222
Q ss_pred ecc-------CcccEEEEEEeCCC-----CcEEEEEcCCCcEEEEECCC-----CceeeEEe----ccCCeeEEEEeCCC
Q 009059 344 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK----CQSGATQMRFQPRL 402 (545)
Q Consensus 344 ~~~-------h~~~V~~l~~~p~~-----~~ll~s~s~dg~I~lwd~~~-----~~~~~~~~----~~~~v~~l~~sp~~ 402 (545)
+.. -...|..+.|.+-. ...|++-..+|.++-|-+.. .+....+. ...+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 23567777775432 12333445577777776532 22333333 24579999999998
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc---CCCCEEEEEeCC------cEEEEEcCCCCCcceEEEEe
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVSDE------LVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s---p~g~~l~s~sdg------~I~vwd~~~~~~~~~i~~~~ 473 (545)
+.|++++.... +.+. -......+++-..- |..+.+....|+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 88888876332 0000 00011122222111 111111111111 1123332221 1111112
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.....|..+..+|||..|++...+|.|.+|++..-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999887665
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-09 Score=113.71 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=178.1
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--e
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--T 328 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~ 328 (545)
.+|+.+++++.|+...+|++|+-+.+.|+.|+..|.|++|++.+|........|..+|+.+.=+.+|..+++.+.-. .
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 36778899999999999999999999999999999999999999999999999999999999999999877765433 4
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-----cCCeeEEEEeCCCC
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLG 403 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-----~~~v~~l~~sp~~~ 403 (545)
..+|++.+.......|. .-.++.|+.....-+ .|.......+||+.++..+.++-. ...-++..|+|...
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 78999986444444554 345777876533333 344445688999999887765321 12246788999866
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 404 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
.++- || .+||++..+.++.|...... ..-.|+|+|.-++..+ .|||+++.. .++..... .-..+.
T Consensus 1244 LIln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~L--dqc~Vt 1308 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPSL--DQCAVT 1308 (1516)
T ss_pred eEee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHHH---HHhcCccc--cceEEE
Confidence 5542 33 58999988777777654422 2335899998888754 589998863 22222110 112344
Q ss_pred EcCCCCEEEEEEc-------------C----CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 484 FHPTFPSLLVIGC-------------Y----ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 484 ~sp~~~~l~~~~~-------------d----g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
|...|..++..-. + ...+-||....+.+....-...|..++-.|...+|+..
T Consensus 1309 FNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1309 FNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred eccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 5555553333220 0 02333444444444333445566677777776666654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=97.11 Aligned_cols=252 Identities=15% Similarity=0.146 Sum_probs=174.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CeEEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP 337 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~ 337 (545)
|.+.|+.|..+ -.+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777777655 356999999999999997543 2344566789999999999999999999777 999999999875
Q ss_pred Cee-eeEeccCcccEEEEEEeCC-CC-cEEEEEcCCCcEEEEECCCCceeeE---EeccCCeeEEEEeCCCCEEEEEECC
Q 009059 338 DYS-LRTFTGHSTTVMSLDFHPS-KE-DLLCSCDNNSEIRYWSINNGSCAGV---FKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 338 ~~~-~~~~~~h~~~V~~l~~~p~-~~-~ll~s~s~dg~I~lwd~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
... ...+....+.+..+ .++. .. .+.++...++.|.++|-....+... -.+..+|.++.+.+.+..+++....
T Consensus 87 DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 542 11122122222222 1221 11 3344455788999999876543322 2255789999999999999999999
Q ss_pred CeEEEEECCC------CEEEEE---------ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE----
Q 009059 412 NYISILDVET------QVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE---- 471 (545)
Q Consensus 412 g~I~i~d~~~------~~~~~~---------~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~---- 471 (545)
|.|..|..+. .+.... +........++.|+|++..+.+-+ |..|+++++++++....+.+
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998873 111111 222345788999999999999988 88999999988743222211
Q ss_pred -------------------------EeeCC-CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC
Q 009059 472 -------------------------LSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 516 (545)
Q Consensus 472 -------------------------~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h 516 (545)
+..++ ..-..++|...+++|+.++--| |++.++.++.+..+.+.
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 11111 2235678999999998887765 88999999888755443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-05 Score=90.63 Aligned_cols=265 Identities=14% Similarity=0.175 Sum_probs=166.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CeEEEEeccCCccEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~---~~~~~~l~~h~~~V~~l~ 312 (545)
-+.+|+|+-. |.. ..+-..-.+-=.+++|-|.|.+||+.-. ...|.+|.-+. ++....+......|..+.
T Consensus 236 ~R~iRVy~Re-G~L---~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 236 RRVIRVYSRE-GEL---QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred eeEEEEECCC-ceE---EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 4677888755 321 1111112222346899999999998764 35677776432 222222234567899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeee-Eec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC----CCC-----
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLR-TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----NNG----- 381 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~-~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~----~~~----- 381 (545)
|++|+..||....|. |.+|-..+-..-++ .+. .....+..+.|+|.....+.....+|.+..+++ ..+
T Consensus 312 Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~ 390 (928)
T PF04762_consen 312 WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSP 390 (928)
T ss_pred ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCc
Confidence 999999999987665 99999987654333 222 223345569999987776666666566655432 211
Q ss_pred -----------c----------------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE--------E
Q 009059 382 -----------S----------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR--------L 426 (545)
Q Consensus 382 -----------~----------------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~--------~ 426 (545)
. +...+.....+.+++|++++..+++...||.|.+|........ .
T Consensus 391 ~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~ 470 (928)
T PF04762_consen 391 NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLS 470 (928)
T ss_pred cCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhh
Confidence 1 1123334567899999999888999999999999985432111 1
Q ss_pred Ee----------cCCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 427 KL----------QGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 ~~----------~~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
.+ ......+..++|..+..+++... + ..+.++++........+.........+..+...+....++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (928)
T PF04762_consen 471 SISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLY 550 (928)
T ss_pred hcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEE
Confidence 11 11234678899988887777666 4 3788888854433334444444455555555555555577
Q ss_pred EEEcCCeEEEEeCCCC
Q 009059 493 VIGCYETLELWNMTEN 508 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~ 508 (545)
.-..+|.+..++....
T Consensus 551 ~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 551 IQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEECCCEEEEeecCCC
Confidence 7777888876655443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.2e-08 Score=96.38 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=89.5
Q ss_pred EEEcCCCCEEEE---EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 269 CHFSPDGKLLAT---GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 269 l~~spdg~~lat---g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
+.|..+...... .+....+.+|....+... .+-+|-..+++|+|+||+++|+++..|..|+|-.+......-....
T Consensus 113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl 191 (390)
T KOG3914|consen 113 ISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL 191 (390)
T ss_pred eeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc
Confidence 444443334333 344556666666654444 3458999999999999999999999999999988876554334456
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
||+.-|..++..++ ++|++++.|++|++||+.+++++.++..
T Consensus 192 GH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 192 GHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence 89999999999876 4567999999999999999999877654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-06 Score=89.52 Aligned_cols=255 Identities=8% Similarity=0.054 Sum_probs=151.8
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc----------cEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~----------~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..+++++.++.|.-+|.++|+.+........ .+. .+.. ++..++.++.+|.+..+|.++++. +..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEV-AWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCC-ccc
Confidence 45777777888999999999988866543220 000 0111 355777888899999999998876 333
Q ss_pred eccCcccEEE-EEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEE--EEeC--CCCEEEEEECCCeEEEEE
Q 009059 344 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 418 (545)
Q Consensus 344 ~~~h~~~V~~-l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l--~~sp--~~~~l~~~~~dg~I~i~d 418 (545)
.... ..+.+ .... + . .++.+..++.|+.+|..+|+.+..+........+ ..+| .++.++++..+|.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 3322 22222 2222 2 3 3446777899999999999998877653221100 0111 235688888899999999
Q ss_pred CCCCEEEEEecCCCC-------CEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 419 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~-------~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..+++.+........ ....+..+| .+..++.++ ++.+..+|..+++ .+-.... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--EEC
Confidence 999987665431110 011111122 233444444 8999999998874 2322211 1111122 245
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+++++.++.++.+|..+++.+ ....-. ....+..+ .+.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 66888899999999999998876 222111 11222222 245677788888877653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-06 Score=82.13 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=133.2
Q ss_pred CCeEEEEECCCCCeeeeEecc-C-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTG-H-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
+|+|..||..+++. +....- . .....+..+ ++++.++ +++.++.|+.||..+|+.+..+.....+.... ...++
T Consensus 2 ~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKE-LWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCE-EEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eeccc
Confidence 68899999988876 433321 1 122222222 2334455 55789999999999999998888755543332 33447
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEe-cCCC---CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 404 RILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~---~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+++++.++.|+.+|.++++.+... .... ...........+..++++. ++.|..+|+.++ ..+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 7888889999999999999998874 3221 1112222222377777777 899999999988 555555443322
Q ss_pred ----------eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 ----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 ----------v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..-....++ .++++..++.+..+|+.+++.+- ......+..+ ...++..|+.++.++.|..||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222223344 68888888854444999999762 2223333332 346778888888999999886
|
... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-06 Score=79.80 Aligned_cols=235 Identities=13% Similarity=0.044 Sum_probs=150.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V 351 (545)
...+||.||..|...+|...+.+.. .....|...|+-+.-..+ ...+..++.|.++++.+++-+........ ..-.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-cccce
Confidence 3458999999999999998865443 333445444433322222 23567778899999988875432111111 11238
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeE-Ee--ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE-
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL- 426 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~-~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~- 426 (545)
.++.+++++..+. +.+....|.+|.+... +.+.. .. ....-.+..|+.....++++..||.+.|||++......
T Consensus 162 ns~~~snd~~~~~-~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 162 NSLHYSNDPSWGS-SVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeEEcCCCceEE-EecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 8999999976555 5555778999988753 22222 22 23446678899988899999999999999998653322
Q ss_pred ----EecCCCCCEEEEEEcCCCC--EEEEEe-CCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCCCEEEEE
Q 009059 427 ----KLQGHKNQVHSVCWNTSGE--YLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 427 ----~~~~h~~~I~~l~~sp~g~--~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+-..|.+.+..+.|++.|. +|.... -+.+.+.|+++....+.+.... .....|....|..++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2234889999999998763 444444 6689999999886544443222 112336677777777666555
Q ss_pred EcCCeEEEEeCCCCeEE
Q 009059 495 GCYETLELWNMTENKTL 511 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~ 511 (545)
..+ .+.-|++......
T Consensus 321 ~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 321 NEL-QGAEYNILSRSRF 336 (344)
T ss_pred cch-hhheeecccccee
Confidence 544 3455666554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-07 Score=86.83 Aligned_cols=249 Identities=14% Similarity=0.126 Sum_probs=146.3
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 365 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~ 365 (545)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++... +..+..+ ..+++++|.-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeE
Confidence 77777777777777788999999999999766 788999999999999998654 6777766 78999999999999999
Q ss_pred EEcCCCcEEEEECCCCceee-EEe---ccCCeeEEEE------eCCCCEEEEEECCCeEEEEECC----CCEEEEEecCC
Q 009059 366 SCDNNSEIRYWSINNGSCAG-VFK---CQSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 431 (545)
Q Consensus 366 s~s~dg~I~lwd~~~~~~~~-~~~---~~~~v~~l~~------sp~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h 431 (545)
.|..+|.|.+||++..+-.. .+. ...++..++. .+.++.+++...+ +..|+.. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998644221 111 1123333332 2233444433332 2233322 222222222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe-C-C----------------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 432 KNQVHSVCWNTSGEYLASVS-D-E----------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-d-g----------------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
.+...++.+.+..+.++... . . ...||..+..-.+.....+ ..-..+.-.++.++|+.
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl----~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL----STTQAIRAVEDNNYIVV 405 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc----ccccceeccccccEEEE
Confidence 33444455554334333332 1 1 1222222111000000000 00011222344454444
Q ss_pred EEc-CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 009059 494 IGC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd--~~~las~s~Dg~I~iWd 545 (545)
.+. .+.+.+||..+.+.+.......+|.+++.... +.||++-. |..++||+
T Consensus 406 ~gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 406 VGDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred ecCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 443 34899999999999866666788888875432 34666665 45677764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-05 Score=75.54 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=151.0
Q ss_pred EEEEEcC-CCCEEEEEeCCC-cEEEEEcCCCeEEEEeccCCccE--EEEEEcCCCCEEEEEeC-----CCeEEEEECCCC
Q 009059 267 ESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENP 337 (545)
Q Consensus 267 ~~l~~sp-dg~~latg~~dg-~I~lwd~~~~~~~~~l~~h~~~V--~~l~~sp~~~~l~t~s~-----dg~I~vwd~~~~ 337 (545)
..++.+| .+..+|.+-.-| ...+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||....
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3578888 566677776665 46789999998887765433321 13579999999998744 589999999955
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc-----------------CCCcEEEEECCCCceeeEEec-----cCCeeE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGATQ 395 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-----------------~dg~I~lwd~~~~~~~~~~~~-----~~~v~~ 395 (545)
-..+..+..|.-....+.+.|+++.|++.-+ .+-.+.+.|..+|+.+..... ...+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 5557788878777788889999977765421 123466677888888877554 235889
Q ss_pred EEEeCCCCEEEEEECCC-------eEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcC
Q 009059 396 MRFQPRLGRILAAAIEN-------YISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 461 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg-------~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~ 461 (545)
+++.++|..++..-..| -|.+++....-..... ..-...|-+|+++.++.++++.+ .+.+.+||..
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 99999965555544433 2444544332111111 12346899999999999998888 6699999998
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
++ ..+.... -..+-.++..+++ +++.+..|.+..
T Consensus 248 tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~ 281 (305)
T PF07433_consen 248 TG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIR 281 (305)
T ss_pred CC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEE
Confidence 87 4443332 1233444444555 455555554433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-09 Score=108.81 Aligned_cols=201 Identities=17% Similarity=0.267 Sum_probs=150.7
Q ss_pred CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-c
Q 009059 294 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-E 372 (545)
Q Consensus 294 ~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-~ 372 (545)
.++...++..|....+|++|+-+.+.|+.|+..|.|++|++.++.. ...+.+|...|+.+.-+.+|..++.+.+... -
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCch
Confidence 3456677888999999999999999999999999999999999875 7788899999999999999988886665554 5
Q ss_pred EEEEECCC-CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cC---CCCCEEEEEEcCCCCEE
Q 009059 373 IRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 373 I~lwd~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~---h~~~I~~l~~sp~g~~l 447 (545)
..+|++.. +...+.| ....++.|+.....-+.|+......+||++++....++ .+ ....-++..|+|+..++
T Consensus 1169 saLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 77899864 3334444 34567888876555667777788999999998776653 22 22234788899998887
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+- || .+||++.. ..++.+.... ....-.|+|.|..++.-+ .|||+++.+.+
T Consensus 1246 ln--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1246 LN--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred ee--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 64 44 58999876 4555544322 222347999999887754 58999887765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=84.95 Aligned_cols=166 Identities=10% Similarity=0.171 Sum_probs=106.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEEcCCCCEEEEEeC-----CCe
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRT 328 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-----dg~ 328 (545)
.+.++..|.++-.+-+.+-.++.+++++.||.+.+++.+... ....+..-...--+.++...+..+.++.. -+.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc
Confidence 344455566655555556667789999999999999976511 11112111111112223334444444321 234
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EE-eccCCeeEEEEeCC-CCEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF-KCQSGATQMRFQPR-LGRI 405 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~-~~~~~v~~l~~sp~-~~~l 405 (545)
.+.|+++..+..+..... ...|.+++-+|....++++|+.||.+-+||.++..... .+ .+...+..+.|+|. ...|
T Consensus 161 ~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 566776643322222222 23499999999999999999999999999999874322 22 24567899999994 5679
Q ss_pred EEEECCCeEEEEECCC
Q 009059 406 LAAAIENYISILDVET 421 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~ 421 (545)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.3e-07 Score=86.46 Aligned_cols=246 Identities=15% Similarity=0.140 Sum_probs=153.8
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC-CEEEEEeCCCeEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVR 330 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~ 330 (545)
|+....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. .+|+.|...|.|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 334557888999999999999776 7888999999999999998888888877 789999998754 5777888899999
Q ss_pred EEECCCCCeeeeEecc--CcccEEEEEEeC------CCCcEEEEEcCCCcEEEEECCC----CceeeEEeccCCeeEEEE
Q 009059 331 VWDTENPDYSLRTFTG--HSTTVMSLDFHP------SKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~--h~~~V~~l~~~p------~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~~~~v~~l~~ 398 (545)
|||++.....+..+.+ ...+|..++.-+ .+. +++.... .+..|++.. .-++..+..++...++.+
T Consensus 262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999977655544433 223455544322 222 3322222 255666542 223334444555667777
Q ss_pred eCCCCEEEEEECCC-------e-EEEEECCCCEEEEEec-CC-CCC------EEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 399 QPRLGRILAAAIEN-------Y-ISILDVETQVCRLKLQ-GH-KNQ------VHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 399 sp~~~~l~~~~~dg-------~-I~i~d~~~~~~~~~~~-~h-~~~------I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
.+..+.+++....+ . +.-.|..+|..+...+ ++ ... -..+.-.++..+|+..+ .+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 77667777766531 1 1112333443333221 12 110 01122234556666655 448999999
Q ss_pred CCCCCcceEEEEeeCCCceEEEEE-cCCCCEEEEEEcCCeEEEEeCC
Q 009059 461 GSGSKGECIHELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~~~~v~~~~~-sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.+. +.+.++... .+|..++. .-++.-++..-.|..++||..+
T Consensus 419 ~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred chh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 887 666666543 56666653 3445555566666777777654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-07 Score=95.80 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
++..++.|+.-..+..+|+.+.+..+...-....|+-++. ++++|.+|...|+|.+-|..+.+. +.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCce-eeeeeccccceee
Confidence 4456777888888999999998887776655555666665 678999999999999999998775 8999999999999
Q ss_pred EEEeCCCCcEEEEEcC---------CCcEEEEECCCCceeeEEeccCCeeEEEEeCC-CCEEEEEECCCeEEEEEC---C
Q 009059 354 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILDV---E 420 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~---------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~---~ 420 (545)
++.. | +++++|+. |..|+|||++.-+.+..+..+....-+.|.|. ...+++++..|...+.|. .
T Consensus 223 fDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8876 3 45556653 56789999999888877777777777888885 356778888999999993 3
Q ss_pred CC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 421 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 421 ~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 22334444555699999999999999999 999999973
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-07 Score=90.48 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=155.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEec--cCCccEEEEEEcC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP 315 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp 315 (545)
|...+.|.-..-.....+..++.|.+.|.+++.+-++.++++.+. |..++++|+++...+.-++ .-.+.+.++ .++
T Consensus 29 DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~sk 107 (558)
T KOG0882|consen 29 DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSK 107 (558)
T ss_pred chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCC
Confidence 334445543333445567888999999999999999999999777 9999999998866653332 122222221 222
Q ss_pred C-C-CEEEE-EeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC------Cceee
Q 009059 316 S-L-SRLAT-SSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSCAG 385 (545)
Q Consensus 316 ~-~-~~l~t-~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~------~~~~~ 385 (545)
. - ..|+. .-.++.|.|+|-....+.. ..-.-|..+|.++.+++.++..+ +....|.|..|.... .+...
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCCcccCccccccc
Confidence 1 1 13333 3457899999977554333 34456899999999999976555 888889999999873 21222
Q ss_pred EE----------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC-------------------------
Q 009059 386 VF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------------------------- 430 (545)
Q Consensus 386 ~~----------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~------------------------- 430 (545)
.+ +......++.|+|++..+.+.+.|..|++++.++++.+..+..
T Consensus 187 ~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma 266 (558)
T KOG0882|consen 187 ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA 266 (558)
T ss_pred cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence 22 2334578999999999999999999999999999876544321
Q ss_pred -------CC-CCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 431 -------HK-NQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 431 -------h~-~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
|. ..-+.++|...|++|+.++==-|+|.++.++
T Consensus 267 verelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 267 VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 11 1335678888999999988545899998876
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.5e-06 Score=82.22 Aligned_cols=259 Identities=14% Similarity=0.119 Sum_probs=151.4
Q ss_pred cCCCCEEEEEe---------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 272 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 272 spdg~~latg~---------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877742 246789999999766654443 66788999999999999885 67899999876643222
Q ss_pred EeccC----------------cccEEEEEEeCCCCcEEEEEcCCCcEE--------------------------------
Q 009059 343 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSEIR-------------------------------- 374 (545)
Q Consensus 343 ~~~~h----------------~~~V~~l~~~p~~~~ll~s~s~dg~I~-------------------------------- 374 (545)
+..+. -+.-..+-|+|++..+++.--++..|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 112356789999988776544443333
Q ss_pred ---EEECCCCceeeEE-e-----ccCCeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEecC-CCCCE---E
Q 009059 375 ---YWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 436 (545)
Q Consensus 375 ---lwd~~~~~~~~~~-~-----~~~~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~-h~~~I---~ 436 (545)
++|+.+++....- . ...-+..+.|.+++..+++.-.+ -.+.++|..++.....+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3444444332111 0 11126678898987745554432 2577778877643322221 22222 3
Q ss_pred EEEEc-CCCCEEEEE-e-CC--cEEEEEcCCCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcC-----CeEEEEeC
Q 009059 437 SVCWN-TSGEYLASV-S-DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 505 (545)
Q Consensus 437 ~l~~s-p~g~~l~s~-s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~d-----g~I~iwd~ 505 (545)
.+.|. +++..++.. . +| .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 666544444 4 77 5666666554 23345545556644 6788888777655553 26777788
Q ss_pred C-CCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 506 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 506 ~-~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
. .+....+......-..+.|||++++++-..
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777766654444336999999999877543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=89.55 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEE--EEcCCCcEEEEECCCCce
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~--s~s~dg~I~lwd~~~~~~ 383 (545)
+..+..++.+++||.+..+....++++..... .+.....-...-+++.|..+....++ ..+....+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44456677888888888888777777654332 11111112233344455444344332 233445566666666777
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~ 461 (545)
...+.+-.-+..++|+||+.+++++..|..|++-....-..+..+ -||+..|..++.-++.. |++++ |++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 777777788999999999999999999999999888776655554 46999999999976554 55655 9999999999
Q ss_pred CCCC
Q 009059 462 SGSK 465 (545)
Q Consensus 462 ~~~~ 465 (545)
+++.
T Consensus 224 sgk~ 227 (390)
T KOG3914|consen 224 SGKL 227 (390)
T ss_pred cCCc
Confidence 9843
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-05 Score=73.87 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCC------CCEEEEEeCCCeEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRV 331 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~------~~~l~t~s~dg~I~v 331 (545)
.=.-++||||+.+||.+...|+|++||+...+ +..+.. -...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 34569999999999999999999999987533 333322 2356777777552 124666678888877
Q ss_pred EECCCC---C-eeeeEe---ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 332 WDTENP---D-YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 332 wd~~~~---~-~~~~~~---~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
|-+..+ + .....+ ..+...|.++.|+|....|++.|.....-..+. ....++++-.+..+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCc
Confidence 765321 1 112222 224678999999998765554444332100000 00112222222221111
Q ss_pred EE--EEECCC------eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 405 IL--AAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 405 l~--~~~~dg------~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
+. ....|+ +..+|.+-+.+...........|..+..+|||.+||+.. +|.|.+|++.+-
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11 111111 112233322222222233567899999999999999999 999999999765
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=84.26 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=104.7
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE---------------------------
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------------------------- 409 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~--------------------------- 409 (545)
.|+|..+....-..+.+.+.|..+.+....+........+.++++++++++.+
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence 44554444344445677788888888888777777777888888888887775
Q ss_pred -------------CCCeEEEEECCC-----CEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC----
Q 009059 410 -------------IENYISILDVET-----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---- 465 (545)
Q Consensus 410 -------------~dg~I~i~d~~~-----~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~---- 465 (545)
.++.|.++|.++ ...+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 124477777776 23333333 455678899999999999888 88999999987532
Q ss_pred -----cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 -----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 -----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
...+.+... +......+|.++|....+..-|..|..||+..
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 012223332 34445678999998777888899999999876
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.5e-06 Score=89.83 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=150.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCCe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NPDY 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~----~~~~ 339 (545)
+.|.++.|.-++.-++.+...|.|.+-|.++.... ....-...|.+++|+||+..++..+.++++.+-+.. ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57999999999999999999999999988775433 333456789999999999999999888887764431 1110
Q ss_pred eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEEE----CC-Ce
Q 009059 340 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAA----IE-NY 413 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~~----~d-g~ 413 (545)
+..-....+....+-|-.....+ -|+ .|.....+.... +..........-+.+.|--+|.++++.. .+ ..
T Consensus 148 -L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 148 -LDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred -cccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 10000011223334443322111 221 222222221111 1111112334567799999988888743 23 78
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
|+|||-+ +..-..-....+.-.+++|-|.|.++++.. |+.|.+|.-..-........+.....++..++|..++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 433222222334457899999999999864 55799998654433333333444445599999999999
Q ss_pred EEEE---EEcCCeEEEEeCCCCeEE
Q 009059 490 SLLV---IGCYETLELWNMTENKTL 511 (545)
Q Consensus 490 ~l~~---~~~dg~I~iwd~~~~~~~ 511 (545)
.|++ ......|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 8887 344446999988776543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-05 Score=72.76 Aligned_cols=226 Identities=13% Similarity=0.118 Sum_probs=148.8
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-eEEEEECCCCCeeeeEeccCcccEE--EEEEeCCCCcEEEEE----cCCCcEEEEECC
Q 009059 308 ITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM--SLDFHPSKEDLLCSC----DNNSEIRYWSIN 379 (545)
Q Consensus 308 V~~l~~sp-~~~~l~t~s~dg-~I~vwd~~~~~~~~~~~~~h~~~V~--~l~~~p~~~~ll~s~----s~dg~I~lwd~~ 379 (545)
...++.+| ....++.+-.-| ...+||..++.. ...+....+.-. .-.|+++|..|+++- ...|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 45678888 455666666655 467899988775 333332222211 357999998777542 335789999998
Q ss_pred -CCceeeEEeccC-CeeEEEEeCCCCEEEEEEC------------------CCeEEEEECCCCEEEEE--e--cCCCCCE
Q 009059 380 -NGSCAGVFKCQS-GATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQV 435 (545)
Q Consensus 380 -~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~------------------dg~I~i~d~~~~~~~~~--~--~~h~~~I 435 (545)
+.+.+.++...+ +...+.+.|++..|+++-. +-.|.+.|..+++.+.. + ..|.-.|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 556666665433 4678899999877777641 22477788899987766 4 2377799
Q ss_pred EEEEEcCCCCEEEEEe-CC-------cEEEEEcCCCCCcceEE----EEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEE
Q 009059 436 HSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLEL 502 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-dg-------~I~vwd~~~~~~~~~i~----~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~i 502 (545)
..+++.++|..++..- .+ .|.+++.... ...+. ......+.+-+++++.++.++++.+--+ .+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999998887765 33 3444443321 11111 0122346789999999999887777655 8999
Q ss_pred EeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 503 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 503 wd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
||..+++.+.... -..+..++..+++ ++++.+.-
T Consensus 244 ~d~~tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 244 WDAATGRLLGSVP-LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EECCCCCEeeccc-cCceeeeeecCCc-eEEeCCCc
Confidence 9999999884432 2335667766655 66665543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=89.31 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=121.3
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-----EEEEEecCCCCCEEEEE
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 439 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~I~~l~ 439 (545)
++.+.+-.|-+-|++++.... |...+.|.++.|...++.++.|+..|.|..+|++.+ .+...+. |...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 355567778899998875443 335577888999988899999999999999999865 3444554 899999998
Q ss_pred EcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE--EEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc
Q 009059 440 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 515 (545)
Q Consensus 440 ~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~--~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~ 515 (545)
... ++.+|.+.+ +|+|++||++.-+...-+..+.+|-+.-.-+ .+.+....+++++.|-..+||.++.+.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 776 677777777 9999999998774444588888887654443 456677789999999999999999998883322
Q ss_pred -----CCCCeeEEEEe
Q 009059 516 -----HDKLVSSLAAS 526 (545)
Q Consensus 516 -----h~~~V~~l~~s 526 (545)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23345666664
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=61.48 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 291 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd 291 (545)
+.+..+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-05 Score=81.85 Aligned_cols=221 Identities=12% Similarity=0.134 Sum_probs=123.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..-....+.++|++++++++ .||...|+....... . ..+......|.+.+ . +|+-...+.|.++.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~--k----~~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN--K----AFGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE--E----EEEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc--c----ccCceeEEEEecCc-c-EEEEECCCeEEEEEcCcccc
Confidence 44557889999999998885 577777777432221 1 12455678888853 3 44666688899963333333
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
...+..+..+..+-. |. ++....++.|.+||..+++.+..+... .|..+.|+++|.+++..++..+.|++....
T Consensus 102 ~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp T-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred ceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 344554444444444 34 555555569999999999999998743 489999999999999999888888876432
Q ss_pred --------CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 464 --------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 464 --------~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.....+..+......|.+.+|..+ .++..+.. .|+. +-.|+.-.+..-+.++.=+...+..+.|...
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLI 250 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE
T ss_pred hcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEE
Confidence 000133333333678889999877 34444444 6665 5556665555456677777888877888888
Q ss_pred eCCCcEEEc
Q 009059 536 SHDKCVKIW 544 (545)
Q Consensus 536 s~Dg~I~iW 544 (545)
..|+.|..+
T Consensus 251 Dr~~~v~~~ 259 (443)
T PF04053_consen 251 DRDGNVISY 259 (443)
T ss_dssp -TT--EEEE
T ss_pred ECCCCEEEE
Confidence 888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-06 Score=89.38 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.+.++|++++ +++|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888887 67999999999999999754 33 344445543 56899999999999999999887764 33
Q ss_pred EeccCcccEEEEEEeCC----CCcEEEEEcCCCcEEEEECC---CCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 343 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~----~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.+. ...++.+++++|+ ....+++|+.-| +.++.-+ ....+......+.|.++.|.. .+++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCCcE
Confidence 333 4568999999998 223455888777 7776532 222222334457799999984 488888888899
Q ss_pred EEECCCCEEEEEecCCCCC------EEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q 009059 416 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~------I~~l~~sp~g~~l~s~sdg~I~vwd~~~ 462 (545)
+||..+++.+..++..... ...+.|.++.+ |+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 9999999888776653332 34577876554 5556666788888873
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=60.65 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00041 Score=72.04 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCEEEEEe-CC----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC-----------eE
Q 009059 266 VESCHFSPDGKLLATGG-HD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 329 (545)
Q Consensus 266 V~~l~~spdg~~latg~-~d----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg-----------~I 329 (545)
+..+++||||++||.+- .. ..|+++|+++++.+...-.... ...+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34578999999988762 22 3599999999987653211111 22399999988877665433 37
Q ss_pred EEEECCCCCee-eeEeccCccc--EEEEEEeCCCCcEEEEEcCC---CcEEEEECCCC-----ceeeEEeccCCeeEEEE
Q 009059 330 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF 398 (545)
Q Consensus 330 ~vwd~~~~~~~-~~~~~~h~~~--V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~-----~~~~~~~~~~~v~~l~~ 398 (545)
..|.+.+.... ...+...... ...+..+++++.+++..... ..+++.++..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776542 2344433332 56888899998887665433 45888898875 33333333333433332
Q ss_pred eCCCCEEEEEEC----CCeEEEEECCCCE---EEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcc
Q 009059 399 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 467 (545)
Q Consensus 399 sp~~~~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~ 467 (545)
.. ++.++..+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|+++++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 455554443 4578888888754 2334445655433333334455565554 55 8999999822 2
Q ss_pred eEEEEe-eCCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEe
Q 009059 468 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 513 (545)
Q Consensus 468 ~i~~~~-~~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 513 (545)
....+. ...+.|..+...++...+...-.. .+++.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 233332 233445666655666544433322 3899999999877643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=86.48 Aligned_cols=158 Identities=14% Similarity=0.214 Sum_probs=117.3
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----Ceeee
Q 009059 269 CHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 342 (545)
Q Consensus 269 l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~----~~~~~ 342 (545)
|+|+-+ |-. ++.+.+-.|-|-|++++... .|. ....|.++.|.-.+.+++.|..+|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 466542 323 44456778889998885433 333 5677999999988899999999999999999865 33344
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEeccCC---eeEEEEeCCCCEEEEEECCCeEEE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~~~~~---v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.+. |...|+++.........+++.+.+|.|++||++.-++ +..+..+.. ..-+.+.+..+.+++++.|-..+|
T Consensus 294 rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 444 8899999988773345555778899999999997776 666653322 223455677889999999999999
Q ss_pred EECCCCEEEEEecC
Q 009059 417 LDVETQVCRLKLQG 430 (545)
Q Consensus 417 ~d~~~~~~~~~~~~ 430 (545)
|.++.+..+.++.-
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.9e-05 Score=78.13 Aligned_cols=258 Identities=10% Similarity=0.067 Sum_probs=150.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc------cEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~------~V~--~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+..++.++.++.|+-.|..+++.+..+..... .+. .+.+. ++..++.++.++.|..+|.++++. +-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~-~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ-VWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE-eeeecC
Confidence 34566677789999999999998877643322 010 11111 226788888999999999999886 333332
Q ss_pred Cccc-----E-EEEEEeCCCCcEEEEEc---------CCCcEEEEECCCCceeeEEeccCC-------------------
Q 009059 347 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 392 (545)
Q Consensus 347 h~~~-----V-~~l~~~p~~~~ll~s~s---------~dg~I~lwd~~~~~~~~~~~~~~~------------------- 392 (545)
.... + ....+.. .. ++.++ .++.|..+|..+++.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2110 1 1122221 23 33443 367899999999998887764211
Q ss_pred --e-eEEEEeCCCCEEEEEECCC------------------eEEEEECCCCEEEEEecCCCCCEE------EEEEc----
Q 009059 393 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN---- 441 (545)
Q Consensus 393 --v-~~l~~sp~~~~l~~~~~dg------------------~I~i~d~~~~~~~~~~~~h~~~I~------~l~~s---- 441 (545)
+ ....+.+.++.+++++.++ .|.-+|+++++.+..++.-..... ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1345555667888887665 799999999999887653111110 00111
Q ss_pred CCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE------------------EcCCe
Q 009059 442 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 499 (545)
Q Consensus 442 p~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~------------------~~dg~ 499 (545)
-++. +++.++ +|.+..+|..+++ .+-..... ...+..+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 566666 8999999999984 33332211 11123333 223332 23568
Q ss_pred EEEEeCCCCeEE-EeccC--C------CCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h--~------~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.-+|+.+++.+ ..... . .+...-.....+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 889999999887 32211 1 1111111112457888888999887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00029 Score=72.00 Aligned_cols=254 Identities=11% Similarity=0.121 Sum_probs=173.0
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEE
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 365 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~ 365 (545)
+.+++..+......+..+. ....+...+++..++... ....+.+.+.. ..........-......+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666655555554333 456678888885554443 22245555554 22111111111144567888898888887
Q ss_pred EEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC---CCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 366 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 366 s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 887789999999988888888877778899999999988888776 689999999999888775543334 8999999
Q ss_pred CCCEEEEEe--CCcEEEEEcCCCCCcc-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEec-c
Q 009059 443 SGEYLASVS--DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLS-A 515 (545)
Q Consensus 443 ~g~~l~s~s--dg~I~vwd~~~~~~~~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~-~ 515 (545)
+|..++... ++.|.++|........ ..............+.+.+++.++++..... .+...|..++...... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999777776 7899999976542110 0000112234456789999999777776654 8999999998887432 1
Q ss_pred CCC-CeeEEEEeCCCCEEEEEeCC-CcEEE
Q 009059 516 HDK-LVSSLAASTVNGMVASASHD-KCVKI 543 (545)
Q Consensus 516 h~~-~V~~l~~spd~~~las~s~D-g~I~i 543 (545)
-.. ....+.++|+|+++.+.... +.+.+
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 112 56778899999988777433 44443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-05 Score=82.10 Aligned_cols=204 Identities=15% Similarity=0.247 Sum_probs=137.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCC-----
Q 009059 312 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 381 (545)
Q Consensus 312 ~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~----- 381 (545)
+|++.+..++.|+.+|.|.+.+-. -..++.+..+...+...-+.-++..++++.+.|+ .|++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999987777643 3334667777766444444555555666655554 5999998642
Q ss_pred -cee---eEEe-----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECC----CCEEEEEecCCCCCEEEEEEcCCCCE-E
Q 009059 382 -SCA---GVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L 447 (545)
Q Consensus 382 -~~~---~~~~-----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~----~~~~~~~~~~h~~~I~~l~~sp~g~~-l 447 (545)
.++ +.+. ...++.+++++.+-..+++|-.+|.|..+.-. .+....-......+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 334 2222 13457889999998889999999999998532 12212222234679999999998877 5
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCe
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLV 520 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V 520 (545)
.++....|.+|.+... . .....+..++....|..+++....+++++. ..|++||....+.- .+. +|....
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 5555778999999843 2 345567788888999999887764555544 46999998765544 665 665543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.7e-06 Score=87.03 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=128.5
Q ss_pred EEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 364 LCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 364 l~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
++.|+.-..+..+|+++.+..+...... ++.-++. ++..+++|...|+|.+-|.++.+.++++..|.+.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--
Confidence 3366667778889999888877766544 3444443 4477888889999999999999999999999999977664
Q ss_pred CCCEEEEEe----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeC---CCC
Q 009059 443 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TEN 508 (545)
Q Consensus 443 ~g~~l~s~s----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~---~~~ 508 (545)
.|+.|++++ |.-|+|||++.-.....+. .+.+ ..-+.|+|.. ..+++++..|...+-|. .+.
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccC-chhhhhcccccceEEEEecccceeeccccccCCC
Confidence 677887765 3368999998764333322 2222 2456788865 45888899999999983 333
Q ss_pred eEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 509 KTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..- .+......+.++++++++..||.|..+|.|.+|-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 221 3334455699999999999999999999999993
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-07 Score=81.65 Aligned_cols=109 Identities=16% Similarity=0.361 Sum_probs=80.2
Q ss_pred cCCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 272 SPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 272 spdg~~latg~~-----dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
...+++|.+++- -+..+.|++...+....-......|.+++-+|. ...+++|+.||.+-+||+++...+...+.
T Consensus 141 ~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ 220 (319)
T KOG4714|consen 141 CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK 220 (319)
T ss_pred eecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH
Confidence 334555554431 234556666543333222223344999999995 45777888999999999999888888899
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.|+.+++.+-|+|....-|+++++||.+..||..+
T Consensus 221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999998777677999999999999874
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-05 Score=78.55 Aligned_cols=195 Identities=13% Similarity=0.156 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 338 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~ 338 (545)
.|.| |++.+..+|.|+.+|.|.+.+ ...+.+..++.+... |..+....+..+|++.+.|+ .++||+++.-.
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 467788999999999998888 445666788877777 44444443446888877765 58999987431
Q ss_pred -----eee---eEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC--C---CceeeEEeccCCeeEEEEeCC
Q 009059 339 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---GSCAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 339 -----~~~---~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~--~---~~~~~~~~~~~~v~~l~~sp~ 401 (545)
.++ +.+. ....++.+++.+.+ -..++.|-.+|.|..+.=+ . .+.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 112 2221 13457888898887 4567788899999988421 1 122223345567999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCEE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 402 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
+..++.+..-..|.+|.+....+ ...+..|...+.|..+++...-++++.+..+.+|+....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88756666667888898885443 444777888999999987666577777778999997643
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0011 Score=65.73 Aligned_cols=268 Identities=14% Similarity=0.099 Sum_probs=136.0
Q ss_pred EEcCCCCEEEEEeC-C--CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 270 HFSPDGKLLATGGH-D--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 270 ~~spdg~~latg~~-d--g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+|.+||+.|+.++. | ..+.+.|+.+++..+--.+.........++++.+.++.......|+-.|+.+.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 67889976666554 4 4567778888877655443323233466778888887776677899999998765 344444
Q ss_pred CcccEEEEEEe--CCCCcEEEEEc---C-------------------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCC
Q 009059 347 HSTTVMSLDFH--PSKEDLLCSCD---N-------------------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 347 h~~~V~~l~~~--p~~~~ll~s~s---~-------------------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~ 402 (545)
....+-...|. .++ ..++..- . ...|...|+.+|+....+....-+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 45555445554 333 3332221 1 134666788888887777766778899999977
Q ss_pred CEEEEEECCC-----eEEEEECCC-CEEEEEecCCCC--CEEEEEEcCCCCEEEEEe---CC---cEEEEEcCCCCCcce
Q 009059 403 GRILAAAIEN-----YISILDVET-QVCRLKLQGHKN--QVHSVCWNTSGEYLASVS---DE---LVRVWSIGSGSKGEC 468 (545)
Q Consensus 403 ~~l~~~~~dg-----~I~i~d~~~-~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s---dg---~I~vwd~~~~~~~~~ 468 (545)
..+++-+.+| .-+||-+++ +.....+..+.. .+..=-|.|||..|..-+ .+ .|.-+|+.++.. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 7777766544 124554432 333333333332 344456899998766533 22 567777777643 22
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCC----------------eEEEEeCCCCeEEEeccCCC-----------Cee
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LVS 521 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V~ 521 (545)
+... ....-+..++++.+++-=+.|. -|+++++..+....+..|.. .=-
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 2344556678888544333331 56778888877654443421 124
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEc
Q 009059 522 SLAASTVNGMVASA-SHDKCVKIW 544 (545)
Q Consensus 522 ~l~~spd~~~las~-s~Dg~I~iW 544 (545)
...|+||+++|+-. ...|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 57899999977654 456665554
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00016 Score=66.38 Aligned_cols=258 Identities=11% Similarity=0.069 Sum_probs=136.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
-|++++.|.+.|.+++.+..+|.....+..-..-=......+++..+..++.|++....|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 367899999999999999999988766643322112234566889999999999999999997664 5444433333334
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCC--ceeeEEeccCCeeE--EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ--MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~~~~~~~~~~v~~--l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
-+..|....++ .+...|.|.--+.+.. ..+..+....++.. ++. +..+..++-||.+.-|| +.++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44555333344 3344555555555544 22222222233221 222 23466666778777777 5566555443
Q ss_pred CCCCCEEE-EEEc-CCCCEEEEEeCC---------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEc-C---CCCEEEEE
Q 009059 430 GHKNQVHS-VCWN-TSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-P---TFPSLLVI 494 (545)
Q Consensus 430 ~h~~~I~~-l~~s-p~g~~l~s~sdg---------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s-p---~~~~l~~~ 494 (545)
..++|.. -+.+ |..+.|..+.++ .-.+|...++ ...+.+. .+-....++ + ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYL---SPKLRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEe---CcccceeccCCCCcchhhhhhh
Confidence 2333321 1112 333334333333 2334554443 1111111 000011221 1 13457778
Q ss_pred EcCCeEEEEeCCCCeEEEeccCCCC---eeEEEE------eC--CCCEEEEEeCCCcEEEcC
Q 009059 495 GCYETLELWNMTENKTLTLSAHDKL---VSSLAA------ST--VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~~~~~h~~~---V~~l~~------sp--d~~~las~s~Dg~I~iWd 545 (545)
+.||.+.|.-.+.. ......|.+. +.++.+ +| -+..|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88998888743222 1122233322 222222 12 124577888999999886
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00061 Score=69.90 Aligned_cols=90 Identities=10% Similarity=0.081 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCcceEEE-EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEE
Q 009059 454 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~-~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~l 532 (545)
.-.+|++...+. .++.. --.....+.+++++|+...++.|+.||.|.+||...+.... ..+.-.++.++|+|+|.++
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEE
Confidence 345677765432 33322 22467789999999999999999999999999997774442 2455668899999999999
Q ss_pred EEEeCCCcEEEcC
Q 009059 533 ASASHDKCVKIWK 545 (545)
Q Consensus 533 as~s~Dg~I~iWd 545 (545)
++|+..|.+.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999997
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-05 Score=76.35 Aligned_cols=261 Identities=13% Similarity=0.080 Sum_probs=140.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 336 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-------- 336 (545)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48899999998899999999999999875432221 000011111222110 00111112222221
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC---------CeeEEEEeC-----CC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRFQP-----RL 402 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~---------~v~~l~~sp-----~~ 402 (545)
+-.+...+....++|++++.+.-| +++.|+.+|.+.|.|++....+..-.... .++++.|.. ++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 222344555668999999998654 88899999999999999888776643322 367777762 21
Q ss_pred ---CEEEEEECCCeEEEEECC--C-CE----EEEEecCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 009059 403 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 450 (545)
Q Consensus 403 ---~~l~~~~~dg~I~i~d~~--~-~~----~~~~~~~h~~~I~~l~-~sp~---------------------g~~l~s~ 450 (545)
-.+++|+..|.+.+|.+. . +. .......+.+.|..|. ++.+ ..+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358889999999999764 1 21 1122224666766665 3221 1267777
Q ss_pred eCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE-----cCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc----CCCCe
Q 009059 451 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 520 (545)
Q Consensus 451 sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~-----sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~----h~~~V 520 (545)
++..++|+...+. +..+...........+.+ ...+..|++-..+|.|++|.+...+.+ ...- +...+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7999999998775 334433322223334444 235667888999999999999998877 3222 22345
Q ss_pred eEEEEeCCCCEEEEEeCC
Q 009059 521 SSLAASTVNGMVASASHD 538 (545)
Q Consensus 521 ~~l~~spd~~~las~s~D 538 (545)
....++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 566778888877666543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.7e-05 Score=78.16 Aligned_cols=197 Identities=15% Similarity=0.133 Sum_probs=126.8
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeC---C-CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---d-g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.....+..-...+..-+|+|++..++..+. . ..+.++++.++... .... ..+.-...+|+|+|..++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 3444445445566777899999887665432 2 46899999887642 2222 344456678999999999998888
Q ss_pred Cc--EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC-C--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 371 SE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~--I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
|. |+++|+..+...+.....+.-..-.|+|+|.+++..+.. | .|.+++.+.+.... +......-..-.|+|||+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCC
Confidence 85 666688777644422233334567899999999888763 3 57888888765533 222222223788999999
Q ss_pred EEEEEe--CCc--EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 446 YLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 446 ~l~s~s--dg~--I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+|+..+ +|. |.+.|+.++.. +..+. .......-.|.+++..++..+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 999887 554 67777766532 22221 233344557788887766655544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-05 Score=81.48 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=130.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
.+.++|++++ ++.|+.|+.+|.|++++.... ..+...|... ..+|+ .+++|+.||.|.+..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---PKTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc---cccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3456777775 568999999999999998742 1333445443 44454 5669999999999999999988
Q ss_pred eEEeccCCeeEEEEeCC-----CCEEEEEECCCeEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEE
Q 009059 385 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVR 456 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~-----~~~l~~~~~dg~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~ 456 (545)
..+....++..++++|+ .+.+++|+..| +.++.-+- ...+ .+....++|.+++| .|.++|-++|--|+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDGVK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCCcE
Confidence 88888899999999997 56788888888 77776431 1222 35556789999999 48899999988899
Q ss_pred EEEcCCCCCcceEEEEeeCCCc------eEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 457 VWSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~------v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|||+.+. ..+..+...... ...+.|.++.+ ++.|...+|+|..++
T Consensus 183 vyd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred EEecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 9999876 333333322222 23456766654 455556678888776
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.2e-05 Score=77.61 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=98.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
.|.--+++..+++|+.|+.-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.|+-+......-..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 344455666789999999999999999766555432 2334555666778888888999999999999988753321111
Q ss_pred -----eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-----ceeeEEeccCCeeEEEEeCCCCEEEEEEC
Q 009059 344 -----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 344 -----~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
-..|...|++++|++++..++ +|+..|.|.+-.+... .....+.....|..+.+.. .++++++.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred eeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 123778999999999986665 9999999998888762 1122333445566665543 45555444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.1e-05 Score=81.21 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=135.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
..+.|.++.|..+..-++.+..+|.|.+-|.++... .....-...|.+++|+||+..++ ....++++.+- ..+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~m-T~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLA-LITGRQTLLFM-TKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEE-eccccc
Confidence 346899999999999999999999999998887543 33334467899999999976554 45445555543 232333
Q ss_pred eeEEec------cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-----C
Q 009059 384 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 452 (545)
Q Consensus 384 ~~~~~~------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-----d 452 (545)
+..... .+....+-|-.....+ -+..|.....+............-.+.=++|+|--||.|+++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF--RGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee--ecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 322211 0111222222211110 01111111111111110000001122335799999999999843 4
Q ss_pred -CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc---CCeEEEEeCCCCeEE----EeccCCCCeeEEE
Q 009059 453 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL----TLSAHDKLVSSLA 524 (545)
Q Consensus 453 -g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l~ 524 (545)
..|+|||-. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-++.+.- .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 111111223344578899999998888754 447999987654322 2333344599999
Q ss_pred EeCCCCEEEE---EeCCCcEEEc
Q 009059 525 ASTVNGMVAS---ASHDKCVKIW 544 (545)
Q Consensus 525 ~spd~~~las---~s~Dg~I~iW 544 (545)
|+.++.+||+ ......|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999999987 4445559998
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00066 Score=66.14 Aligned_cols=256 Identities=9% Similarity=0.098 Sum_probs=153.0
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCCeeeeEeccC--c----
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 348 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~~~~~~~~~~h--~---- 348 (545)
+.++|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998876653 22334678999998887542 3469999998764322211111 1
Q ss_pred ccEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC-CCEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 426 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~~~ 426 (545)
.....+.++.+++.+++.- +---.|.|.|+..++.+.++..++...-.-. .+ ..+.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GN-RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ET-TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CC-CceEEEecCCceEEEEECCCCCEeE
Confidence 1223346667766655332 2334688888888888888776543322222 22 568899999999988887 444432
Q ss_pred E----ecCCCCCEE-EEEEcCCC-CEEEEEeCCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCE
Q 009059 427 K----LQGHKNQVH-SVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 490 (545)
Q Consensus 427 ~----~~~h~~~I~-~l~~sp~g-~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~ 490 (545)
+ |.....++. .-.+...+ .++....+|.|+-.|+..... .....+... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 222222222 33444444 455555599999999876532 222232211 122344677776666
Q ss_pred EEEEEc--------CC--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEE-eCCCcEEEcC
Q 009059 491 LLVIGC--------YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASA-SHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~--------dg--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~-s~Dg~I~iWd 545 (545)
|++.-. ++ .|.+||+.+++.+....-...+.+|.++.+.+ +|++. ..++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 665432 11 68889999999984444445688999998887 66554 4578999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00042 Score=73.39 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=130.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc--EEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCCeeee
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~--V~~l~~sp--~~~~l~t~s---------~dg~I~vwd~~~~~~~~~ 342 (545)
..++.++.++.|+-+|.++|+.+..+...... -..+.-+| .+..++.++ .+|.|..+|..+++...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777888999999999999999777543221 01111112 124455553 367899999998876333
Q ss_pred EeccCc-------------------ccEE-EEEEeCCCCcEEEEEcCCC------------------cEEEEECCCCcee
Q 009059 343 TFTGHS-------------------TTVM-SLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 384 (545)
Q Consensus 343 ~~~~h~-------------------~~V~-~l~~~p~~~~ll~s~s~dg------------------~I~lwd~~~~~~~ 384 (545)
.-.... ..+. ...+.+.+. +++.+..++ .|.-+|+.+++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 222111 0111 233344433 344555444 7999999999999
Q ss_pred eEEeccCC-e------eEEEEe----CCCC---EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 385 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 385 ~~~~~~~~-v------~~l~~s----p~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
..+..... . ....+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +.+++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88753211 1 111111 1222 4677788999999999999988765421 11123333 2222211
Q ss_pred ------------------eCCcEEEEEcCCCCCcceEEEEeeCC--------CceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 451 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 451 ------------------sdg~I~vwd~~~~~~~~~i~~~~~~~--------~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.++.|.-+|+.+++ .+-...... .....-...-.+..|++++.+|.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 14567777877773 332222110 1111111112456788999999999999
Q ss_pred CCCCeEE
Q 009059 505 MTENKTL 511 (545)
Q Consensus 505 ~~~~~~~ 511 (545)
.++++.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-05 Score=79.04 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=125.6
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCC---CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 414 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I 414 (545)
...+..-...+..-+|+|++..+.+..-.. ..++++|+.+++...............|+|+|.+++.+.. || .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444454556788889999988876654333 3599999999988887777777788899999998887765 55 68
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+++|+..+.... +....+.-..-.|+|||++|+..+ .| .|.+++...... ..+......-..-.|+|+|++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888888876433 443333334668999999999888 34 567777665532 222222233337789999999
Q ss_pred EEEEEcC-C--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEE
Q 009059 491 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 491 l~~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las 534 (545)
|+..+.. | .|.+.|+.++.......+......-.|.++++.++.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9888854 3 477788766653333333333344455666554443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.8e-05 Score=77.70 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=134.5
Q ss_pred EcCCCCEEEE-EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCCeeeeEec
Q 009059 271 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 271 ~spdg~~lat-g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg----~I~vwd~~~~~~~~~~~~ 345 (545)
++|||+.+.. .-..+.+.+.|.++.+....+.-.. ....+.++++++++++.+.+. ++..-+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 4556655432 2234667778888877776665332 446688999999998886432 333333322111 11111
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----CceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-----~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
-. .+ .++.++|+..++ .++.|.+.|..+ .+.+..+........+.++|+|.++++++. ++.|.|+|+
T Consensus 278 i~--~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IA--RI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hH--HH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 00 00 023456665553 267899999998 567778888888999999999999888776 899999999
Q ss_pred CCCEE------------EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC------CCC-cceEEEEeeCCCce
Q 009059 420 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 479 (545)
Q Consensus 420 ~~~~~------------~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~------~~~-~~~i~~~~~~~~~v 479 (545)
.+.+. +...+- .......+|.++|....+-. |..|..|++.. +.. ...+..+..|..+-
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22345678899998777777 99999999876 111 23444444444333
Q ss_pred EEEE-----EcCCCCEEEEEE
Q 009059 480 HSCV-----FHPTFPSLLVIG 495 (545)
Q Consensus 480 ~~~~-----~sp~~~~l~~~~ 495 (545)
...+ -.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 3222 356777776654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-05 Score=82.14 Aligned_cols=109 Identities=15% Similarity=0.232 Sum_probs=84.3
Q ss_pred EEEEcCCCCEEEEEe----CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 268 SCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 268 ~l~~spdg~~latg~----~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
-..|+|...++|+++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. ...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-eee
Confidence 357899888888876 357888885 5566543322 122356799999988899999999999999887654 455
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
...|..+|..+.|+++|..++ ++..-|.|.+|....
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYDV 132 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEeee
Confidence 567999999999999987655 999999999998763
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00086 Score=67.99 Aligned_cols=248 Identities=17% Similarity=0.176 Sum_probs=141.7
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccC--------------
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEH-------------- 304 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h-------------- 304 (545)
...-++|..++.. ..+......+....|||+|+.+|... ++.|.+++..+++..+.- .+-
T Consensus 23 ~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 23 GDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred eeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 3455667766542 22222256788999999999999885 689999998877554322 110
Q ss_pred --CccEEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEECCCCCee-eeEe-
Q 009059 305 --TQWITDVRFSPSLSRLATSSADR------------------------------------TVRVWDTENPDYS-LRTF- 344 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~dg------------------------------------~I~vwd~~~~~~~-~~~~- 344 (545)
-+.-..+-|+||+++||....|. .+.|+|+.+++.. +...
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 11235688999999998864431 1334455444321 1111
Q ss_pred --ccCcccEEEEEEeCCCCcEEE-EEcCCC---cEEEEECCCCceeeEEeccCC-----eeEEEEe-CCCCEEEEE-ECC
Q 009059 345 --TGHSTTVMSLDFHPSKEDLLC-SCDNNS---EIRYWSINNGSCAGVFKCQSG-----ATQMRFQ-PRLGRILAA-AIE 411 (545)
Q Consensus 345 --~~h~~~V~~l~~~p~~~~ll~-s~s~dg---~I~lwd~~~~~~~~~~~~~~~-----v~~l~~s-p~~~~l~~~-~~d 411 (545)
..-...+..+.|.+++..+++ ....+. .+.++|..++++......... .....|. +++..++.. ..+
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 123456888999998763443 333332 466778877665544432221 2355555 666655544 456
Q ss_pred C--eEEEEECCCCEEEEEecCCCCCEEE-EEEcCCCCEEEEEe--CC----cEEEEEcCCCCCcceEEEEeeCCCceEEE
Q 009059 412 N--YISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 412 g--~I~i~d~~~~~~~~~~~~h~~~I~~-l~~sp~g~~l~s~s--dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~ 482 (545)
| .|++++...+... .+....-.|.. +.|+++++.|...+ ++ .|..-++..+ ..+..+.+.......+
T Consensus 258 G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSA 333 (353)
T ss_dssp SSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEE
T ss_pred CCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEE
Confidence 6 6777788877644 45545566755 67888877655443 22 4555555511 3445555444444799
Q ss_pred EEcCCCCEEEEEEc
Q 009059 483 VFHPTFPSLLVIGC 496 (545)
Q Consensus 483 ~~sp~~~~l~~~~~ 496 (545)
.|+|++++++....
T Consensus 334 ~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 334 SFSPDGKYYVDTYS 347 (353)
T ss_dssp EE-TTSSEEEEEEE
T ss_pred EECCCCCEEEEEEc
Confidence 99999998876554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00058 Score=69.84 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=153.1
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCeee
Q 009059 266 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 341 (545)
Q Consensus 266 V~~l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~~~ 341 (545)
-..++++++++. .++...++.|.+.|..+.+......--. ....++++++++.++.+.. ++++.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888874 4444456899999988777766554322 5678999999988877765 6889999988877644
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-----EEeccCCeeEEEEeCCCCEEEEEECC---Ce
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 413 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~v~~l~~sp~~~~l~~~~~d---g~ 413 (545)
. ...-..+ ..+++.|++..++++-..++.|.+.|........ ..........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3322234 8999999998888777789999999987665553 23334456789999999977776654 59
Q ss_pred EEEEECCCCEEEEEecCCCC-CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 414 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~-~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
+.+.|..++........-.. ....+..+|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999999877665221122 566789999999998886 4689999987763222222222223335555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00078 Score=69.58 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=119.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE-ECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw-d~~~~~~~~ 341 (545)
.-....+.++|+|+++++++ ||...||.....+.... +.-...+|.+. ..+|+-...++|.|+ ++++.. .
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~--~ 102 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV--V 102 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T--T
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc--c
Confidence 33467899999999999965 78888988555444432 23445788884 457777778899996 443222 1
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
..+.. ...+..|-. |..|+ ..+ ++.|.+||+.+++.++.+.... +..+.|++++.+++..+. ..++|++...
T Consensus 103 k~i~~-~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~-~~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK-DSIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC-CeEEEEEecc
Confidence 22221 123444433 54444 444 4489999999999999998653 899999999887777764 4666665433
Q ss_pred C-----------EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 422 Q-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 422 ~-----------~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
. .....+..-...|.+.+|..+ .++..+...|+. +..+ ....+..-..++.-+.+.+..+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGYLPKENR 246 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEEETTTTE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEEEccCCE
Confidence 2 012222222568899999766 444444336766 3333 22333334567777788887777
Q ss_pred EEEEEcCCeEEEEeCC
Q 009059 491 LLVIGCYETLELWNMT 506 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~ 506 (545)
++....++.|..+.+.
T Consensus 247 ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 247 LYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-TT--EEEEE--
T ss_pred EEEEECCCCEEEEEEC
Confidence 8888888888777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-05 Score=82.74 Aligned_cols=262 Identities=14% Similarity=0.113 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEe
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~ 344 (545)
+++++|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|..|+++..-|.|.+|....... ....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 56799999988899999999999999988777777788999999999999999999999999999998873221 11122
Q ss_pred ccCc--ccE--EEEEEeCCCCcE------EEEEcCCCcEE-EEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 345 TGHS--TTV--MSLDFHPSKEDL------LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 345 ~~h~--~~V--~~l~~~p~~~~l------l~s~s~dg~I~-lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
..|. ..+ +|....++++.+ .++|+ +..+- .++.+.....+.... .-.|+|..+++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCce
Confidence 2222 223 333445553322 22333 33332 333332111111111 11367778888999999
Q ss_pred EEEEECCCCE-EEEEec--------CCCCCEEEEEEcCCCCEEEEEeCCc------EEEEEcCCCCC-cc--------eE
Q 009059 414 ISILDVETQV-CRLKLQ--------GHKNQVHSVCWNTSGEYLASVSDEL------VRVWSIGSGSK-GE--------CI 469 (545)
Q Consensus 414 I~i~d~~~~~-~~~~~~--------~h~~~I~~l~~sp~g~~l~s~sdg~------I~vwd~~~~~~-~~--------~i 469 (545)
|+..|-.... .+.... +....|.++.-.-...++..-..|+ +++= .+.+.. +. .+
T Consensus 214 Vyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~s-gk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 214 VYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVS-GKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred EEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhc-cccCCccCccccccccccc
Confidence 9988854332 122111 1112222221111111111111110 0000 000000 00 00
Q ss_pred ---EEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe--------EEEec---cCCCCeeEEEEeCCCCEEEE
Q 009059 470 ---HEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTLS---AHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 470 ---~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------~~~~~---~h~~~V~~l~~spd~~~las 534 (545)
..+ ...+..+.++++...+..|+.|...|.+.+|--.... ...+. ...+.|+.+.|.|-...++.
T Consensus 293 r~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 293 RKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 000 0124668999999999999999999999999543221 11222 23467999999986555444
Q ss_pred Ee
Q 009059 535 AS 536 (545)
Q Consensus 535 ~s 536 (545)
-+
T Consensus 373 n~ 374 (1416)
T KOG3617|consen 373 NT 374 (1416)
T ss_pred hh
Confidence 33
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00019 Score=73.48 Aligned_cols=115 Identities=10% Similarity=0.142 Sum_probs=83.4
Q ss_pred CcccEEEEEEeCCCCcEEEEE----cCCCc----EEEEECCCCce----eeEEeccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~----s~dg~----I~lwd~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
-+....++.|+-..++.+.+. +.+|. -.+|++...+. +..+.....+.+++++|+...++.|+.||.|
T Consensus 204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 344456677776545544443 23343 34566654432 2345567889999999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999987744332 2445678999999999999999 689999998654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00064 Score=62.58 Aligned_cols=149 Identities=11% Similarity=-0.021 Sum_probs=112.6
Q ss_pred EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCE
Q 009059 356 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
..++.+.+++.|+..+.+...|..+|...........+.+-+.- -+++++.|+..|.+++.+.+++.....+..-..--
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 34555678888999999999999999988877766666655554 45789999999999999999998777766433322
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 436 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
......+++.++..++ |+..+..|.++. .++...+..+....+-++.|....|+++...|.+.--..+..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 3345678999999999 999999999876 788888877777777777785555777777775555454444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0021 Score=60.85 Aligned_cols=199 Identities=12% Similarity=0.178 Sum_probs=113.7
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+.+-...+..++|+|+.+.|+++....+.|..++.. |+.++.+... .....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999988999999999999999974 7888877654 457889998775444444348999999883
Q ss_pred CC------EEEEEec-----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC--CCCcceEEEE------eeCCCceE
Q 009059 421 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 480 (545)
Q Consensus 421 ~~------~~~~~~~-----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~--~~~~~~i~~~------~~~~~~v~ 480 (545)
.. .....+. .++..+-.++|++.++.|+++. ..-..+|.+.. ......+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 1111221 2445689999999877777777 55566676654 1111111111 11234578
Q ss_pred EEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEE---Eecc--CC-----CCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 481 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--HD-----KLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~---~~~~--h~-----~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.++|....|++-+. ...|.++| .+++.+ .+.. |. ...-.|+|.++|++.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 8999998766655555 45888999 455554 3322 11 34778999999865444 466666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.9e-07 Score=90.57 Aligned_cols=198 Identities=18% Similarity=0.249 Sum_probs=134.6
Q ss_pred CccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEc----CCCcEEEEE
Q 009059 305 TQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWS 377 (545)
Q Consensus 305 ~~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s----~dg~I~lwd 377 (545)
...+.|+++.-+ ..+++.|..+|.|.+-.++..... .....++...+++++|++-....+|.|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345677776553 347888999999999988765433 4556678899999999987666776652 466899999
Q ss_pred CCCC--ceeeEEe----ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-EEEEecCCCCCEEEEEEcC-CCCEEEE
Q 009059 378 INNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLAS 449 (545)
Q Consensus 378 ~~~~--~~~~~~~----~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~~h~~~I~~l~~sp-~g~~l~s 449 (545)
+.++ .+..... ...+...++|..+.+.+++|.....++++|++... ....+ .+..+..+..+| .+.|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9876 2222111 22456688898887788888888999999998432 12212 234567788888 7889998
Q ss_pred EeCCcEEEEE-cCCCCCcceEEEEeeCC----CceEEEEEcCCCCE-EEEEEcC-CeEEEEeCC
Q 009059 450 VSDELVRVWS-IGSGSKGECIHELSCTG----NKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 506 (545)
Q Consensus 450 ~sdg~I~vwd-~~~~~~~~~i~~~~~~~----~~v~~~~~sp~~~~-l~~~~~d-g~I~iwd~~ 506 (545)
..||.|.+|| .+..+ ..+..+.... ..+..++|.|...- +++...| ++|++||+.
T Consensus 214 ~~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8899999999 43322 1222222222 34889999996543 4444444 489999884
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00068 Score=67.78 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=119.8
Q ss_pred eEEEEECCCCCeeeeEec-cCcccEEEEEE---eCC---CCcEEEEEcC----------CCcEEEEECCCC-------ce
Q 009059 328 TVRVWDTENPDYSLRTFT-GHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-------SC 383 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~---~p~---~~~ll~s~s~----------dg~I~lwd~~~~-------~~ 383 (545)
.|++.|..+... +..+. .....+++++. ..+ ...+++.|.. .|.|.++++... +.
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578888776653 33322 12334554443 222 1455555531 288999999884 23
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-EEEE-ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEc
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~-~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~ 460 (545)
+......+.|.+++-. +++ ++++.++.|++|++...+ .... .......+.++... +.++++|. ...+.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344567788888877 355 455556999999998766 3322 22233366777654 55888888 666666655
Q ss_pred CCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC-------C--eEE--EeccCCCCeeEE---E
Q 009059 461 GSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 524 (545)
Q Consensus 461 ~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~-------~--~~~--~~~~h~~~V~~l---~ 524 (545)
.... ..+..+ ......+.++.|-+++..++++..+|.|.++.... + +.. ........|+++ .
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4321 222222 23355688888886667899999999999987753 2 222 222345668777 5
Q ss_pred EeCC--CC------EEEEEeCCCcEEE
Q 009059 525 ASTV--NG------MVASASHDKCVKI 543 (545)
Q Consensus 525 ~spd--~~------~las~s~Dg~I~i 543 (545)
+.|. +. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 5552 22 4888889998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0021 Score=64.20 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCeEEEEecc-CCccEEEE---EEcCC----CCEEEEEeC----------CCeEEEEECCCC-----Ceee
Q 009059 285 KKAVLWCTESFTVKSTLEE-HTQWITDV---RFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 341 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~-h~~~V~~l---~~sp~----~~~l~t~s~----------dg~I~vwd~~~~-----~~~~ 341 (545)
..|+|.|..+.+.+..+.- ....++++ .|..+ ..+|+.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888777755532 12334443 44332 467777753 289999999873 2222
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
..-....++|++++-. ++.++++. ++.|++|++...+ ..........+........+++++++.....+.++..+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2333457889999877 33455444 5789999998877 55554444443444444445799999988877776443
Q ss_pred C-CEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-------C-CcceEEEEeeCCCceEEE---EEc
Q 009059 421 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH 485 (545)
Q Consensus 421 ~-~~~~~~~--~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~-------~-~~~~i~~~~~~~~~v~~~---~~s 485 (545)
. ...+..+ ......++++.+-++++.++++. +|.+.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 2 2222222 22355688999986667777777 899999887631 1 112223332 34556666 444
Q ss_pred C--CCC------EEEEEEcCCeEEE
Q 009059 486 P--TFP------SLLVIGCYETLEL 502 (545)
Q Consensus 486 p--~~~------~l~~~~~dg~I~i 502 (545)
| .+. .++.++.+|.|.+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 4 222 4888889998773
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-06 Score=88.25 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=127.0
Q ss_pred CeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcC-CCCEEEEEe----CCCeEEEEECC
Q 009059 265 KVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWDTE 335 (545)
Q Consensus 265 ~V~~l~~spdg--~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp-~~~~l~t~s----~dg~I~vwd~~ 335 (545)
.+.|+++.-+. ..+++|..+|.|.+-....... .....+|....++++|++ |.+.||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46677766543 4789999999999987654222 234567888999999998 566777763 25679999998
Q ss_pred CCC----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+.- .......+-.....+++|..+ ..++.+|.....+.++|++.............+..+.+.|-....++...|
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~d 216 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSD 216 (783)
T ss_pred cccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecccc
Confidence 651 111111123345668888865 456668888889999999843222211122346667777844456667779
Q ss_pred CeEEEEEC-CCCE-EEEEecC----CCCCEEEEEEcCCCC-EEEEEe--CCcEEEEEcCC
Q 009059 412 NYISILDV-ETQV-CRLKLQG----HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 462 (545)
Q Consensus 412 g~I~i~d~-~~~~-~~~~~~~----h~~~I~~l~~sp~g~-~l~s~s--dg~I~vwd~~~ 462 (545)
|.|.+||. +.-+ ++..+.. ....+..++|+|... .+++.. .++|+++|+..
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 99999993 3322 2222221 122489999999643 444455 55999999864
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0014 Score=64.00 Aligned_cols=240 Identities=12% Similarity=0.161 Sum_probs=150.3
Q ss_pred cccccCCCCCCcccceeeeeecCCceeeEEEEeecCCCC----CeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCeEEE
Q 009059 226 VESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS----KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKS 299 (545)
Q Consensus 226 ~~~~~s~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~----~V~~l~~spdg~~latg~--~dg~I~lwd~~~~~~~~ 299 (545)
.+.|.+....+.+.-.+.+||..+-....++.....|.. ....++++.||++++... -.-.|.|-|+...+.+.
T Consensus 53 a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 53 AETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred EEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence 455666666677788999999999887777776655332 233468899999888764 34679999999998887
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE----eccCcccEE-EEEEeCCCCcEEEEEcCCCcEE
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~----~~~h~~~V~-~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.+.-. +.. +.|-.....|.+-|.||.+.-..+......... |.....++. .-++...+..+++ -+.+|.|+
T Consensus 133 ei~~P-GC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~ 208 (342)
T PF06433_consen 133 EIDTP-GCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVY 208 (342)
T ss_dssp EEEGT-SEE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEE
T ss_pred eecCC-CEE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEE
Confidence 77532 211 112112346888889999999988844332221 112222222 3334444444443 45688888
Q ss_pred EEECCCCceee--EEec-----------cCCeeEEEEeCCCCEEEEEECC---C-------eEEEEECCCCEEEEEecCC
Q 009059 375 YWSINNGSCAG--VFKC-----------QSGATQMRFQPRLGRILAAAIE---N-------YISILDVETQVCRLKLQGH 431 (545)
Q Consensus 375 lwd~~~~~~~~--~~~~-----------~~~v~~l~~sp~~~~l~~~~~d---g-------~I~i~d~~~~~~~~~~~~h 431 (545)
-.|+....... .+.. +++..-+++++..++|++.-.. + .|.+||+.+++.+..+..
T Consensus 209 ~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l- 287 (342)
T PF06433_consen 209 SADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL- 287 (342)
T ss_dssp EEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-
T ss_pred EEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-
Confidence 88887654322 2221 2345568888877777764421 1 588999999999988873
Q ss_pred CCCEEEEEEcCCCC-EEEEEe--CCcEEEEEcCCCCCcceEEEEe
Q 009059 432 KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 432 ~~~I~~l~~sp~g~-~l~s~s--dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
..++.+|..+.+.+ +|++.+ ++.+.+||..++ +.+.++.
T Consensus 288 ~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 288 EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 34677999998776 555544 679999999998 5555554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0052 Score=59.84 Aligned_cols=224 Identities=14% Similarity=0.166 Sum_probs=130.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE--------
Q 009059 273 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 343 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~-------- 343 (545)
..++.|+.|+.+| +.+++.. ..+...... ...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999888 9999983 333333332 23399999999877777764 599999998754321100
Q ss_pred -----eccCcccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCC-----ceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 344 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 344 -----~~~h~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.......+...+ -...+...++.+ ....|.+|..... ...+.+.....+..++|.. +.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-C
Confidence 111223444444 122333444333 3558888877542 5667788889999999993 5565555 5
Q ss_pred CeEEEEECCCCEEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 412 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
+...+.|+.++.....+... ..++..+.. +++.+|++ .+..-.+.|.. |.... -..+.-. ...
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W~-~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQWS-SAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEcC-Cch
Confidence 55888899876544333211 123333343 34566654 34444444443 22111 1222222 244
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 512 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~ 512 (545)
..+++ ..++|++... +.|.||++.+++.+.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence 45555 3355666555 569999999998873
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0073 Score=57.25 Aligned_cols=200 Identities=13% Similarity=0.179 Sum_probs=114.4
Q ss_pred EEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccC-CccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.+.+.+-...|..|+|.|+.+ ++|+....+.|..++. .|+.+..+.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345666667799999999755 5666667788888886 47777766433 35688899988887777766689999998
Q ss_pred CCCCCee--e---eEe-----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC---CceeeEEe---------ccC
Q 009059 334 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 391 (545)
Q Consensus 334 ~~~~~~~--~---~~~-----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~---~~~~~~~~---------~~~ 391 (545)
+...... . ..+ ..+...+-.++|.+.++.++++. ...-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 12445689999999988888554 444455555543 21111111 123
Q ss_pred CeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 392 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
.+..+.++|..+.+++-+. ...|..+| .+|+.+..+.-.. ...-.|+|.++|++.++..-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4788999998777776665 67888899 5666555443222 35788999999987777665555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0028 Score=61.78 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=125.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee----------
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---------- 385 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---------- 385 (545)
.++.|+.|+.+| +.++++.......+.. +...|..+...++-+.+++.+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence 577899999998 8999984333322222 233499999999876666554 6999999987644333
Q ss_pred -----EEeccCCeeEEE--EeCCCCEEEEEECCCeEEEEECCCC-----EEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 009059 386 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 453 (545)
Q Consensus 386 -----~~~~~~~v~~l~--~sp~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg 453 (545)
.+....++...+ -...+...+++.....|.+|..... +....+. -...+.+++|. +..|+.+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 122223344444 2234556677777779888887653 3445554 45788999998 6778888777
Q ss_pred cEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeE
Q 009059 454 LVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 522 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~ 522 (545)
...+.|+.++.. ..+...... ..++..+. -+++.+|++- +..-.+.|..+.... ....-...+.+
T Consensus 158 ~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 799999987643 222211111 11222223 3344555442 333334454332221 11112234556
Q ss_pred EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 523 LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++. ..||+..+.++ |.||+
T Consensus 234 ~~~~--~pyli~~~~~~-iEV~~ 253 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSNS-IEVRS 253 (275)
T ss_pred EEEE--CCEEEEECCCE-EEEEE
Confidence 6663 45777776644 88774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0044 Score=60.82 Aligned_cols=216 Identities=11% Similarity=0.054 Sum_probs=130.2
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 311 VRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 311 l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
..|.++...| .+--..+.|.-|+..++.. ..+. +...+.++.....+..++ ++ +..+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3466666644 4444577888898876653 3333 233445555444444444 55 3447778876665533222
Q ss_pred c-----cCCeeEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 389 C-----QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 389 ~-----~~~v~~l~~sp~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
. ....+.+.+.|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 123567888999665554333 134666665 4555555665566678999999999888877
Q ss_pred -CCcEEEEEcCC--CCCcc--eEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEE-EeccCCCCeeEEE
Q 009059 452 -DELVRVWSIGS--GSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA 524 (545)
Q Consensus 452 -dg~I~vwd~~~--~~~~~--~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 524 (545)
.+.|..|++.. +.... ....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 46888887752 21111 1222223445666778888888665554444 89999998 6666 4444447788888
Q ss_pred Ee-CCCCEEEE
Q 009059 525 AS-TVNGMVAS 534 (545)
Q Consensus 525 ~s-pd~~~las 534 (545)
|- ++.+.|..
T Consensus 262 FgG~~~~~L~i 272 (307)
T COG3386 262 FGGPDLNTLYI 272 (307)
T ss_pred EeCCCcCEEEE
Confidence 85 44454443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.015 Score=62.05 Aligned_cols=187 Identities=10% Similarity=0.030 Sum_probs=114.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEE---E-------EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~---~-------l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|+-.|..+|+.+..+.... ..+. + +++ .+..++.++.|+.|...|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887764311 1111 1 122 2346777888999999999998864332
Q ss_pred ecc-Cc--ccEEE-EEEeCCCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccCC----------------------
Q 009059 344 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 392 (545)
Q Consensus 344 ~~~-h~--~~V~~-l~~~p~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~~---------------------- 392 (545)
-.. +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 01111 1111 2 33443222 268999999999998876542110
Q ss_pred -----------eeEEEEeCCCCEEEEEECC-----C-----------eEEEEECCCCEEEEEecCCCCC---------EE
Q 009059 393 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQ---------VH 436 (545)
Q Consensus 393 -----------v~~l~~sp~~~~l~~~~~d-----g-----------~I~i~d~~~~~~~~~~~~h~~~---------I~ 436 (545)
-..+.+.+..+.++.+... + .|.-.|+++++.+..++..... ..
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 1134777777777776622 2 6888899999988777652221 12
Q ss_pred EEEEcCCCC---EEEEEe-CCcEEEEEcCCCCC
Q 009059 437 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 437 ~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~ 465 (545)
-+.+..+|+ .|+.+. +|.++++|-.+++.
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 223334665 666777 89999999988853
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=66.47 Aligned_cols=207 Identities=14% Similarity=0.125 Sum_probs=121.4
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--ecc------CCccEEEEEEcC-----CC
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEE------HTQWITDVRFSP-----SL 317 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~------h~~~V~~l~~sp-----~~ 317 (545)
..|.++..+....++|++|+.|.=| ++|.|..+|.+.|.|++.-..+.. +.. ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 3477888888889999999998555 999999999999999988777654 222 345688898863 33
Q ss_pred ---CEEEEEeCCCeEEEEECCC---CCeeee---EeccCcccEEEEEEe-CCC--------------------CcEEEEE
Q 009059 318 ---SRLATSSADRTVRVWDTEN---PDYSLR---TFTGHSTTVMSLDFH-PSK--------------------EDLLCSC 367 (545)
Q Consensus 318 ---~~l~t~s~dg~I~vwd~~~---~~~~~~---~~~~h~~~V~~l~~~-p~~--------------------~~ll~s~ 367 (545)
-+|++|...|.+.+|.+.- +.+.+. ....+.++|..|..- .+. ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4788999999999998751 222111 222456677666632 221 1244344
Q ss_pred cCCCcEEEEECCCCceeeEEeccCC--eeEEEEe-----CCCCEEEEEECCCeEEEEECCCCEEEEEecCCC----CCEE
Q 009059 368 DNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVH 436 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~~~~~--v~~l~~s-----p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~I~ 436 (545)
+ +..++++...+.+...... ... ...+.+- ..+..|++...+|.|++|.+...+.+..+.-+. ..+.
T Consensus 233 S-e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp --SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred c-ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 4 7789999998877766554 332 2334442 245567788889999999999988887776532 2344
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 437 SVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 437 ~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
..+++++|..++-.+...+.++.+
T Consensus 311 ~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 311 SSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp T-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred ccEECCCCCEEEEeCcccEEEEEE
Confidence 566788898887777665555554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.01 Score=61.60 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=125.6
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC----------C
Q 009059 307 WITDVRFSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 371 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~-s~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d----------g 371 (545)
.+....++|++++||.+ +.. ..|+++|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998865 333 369999999886533333321 122399999988888776433 2
Q ss_pred cEEEEECCCCcee--eEEeccC--C-eeEEEEeCCCCEEEEEEC---C-CeEEEEECCCC-----EEEEEecCCCCCEEE
Q 009059 372 EIRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAI---E-NYISILDVETQ-----VCRLKLQGHKNQVHS 437 (545)
Q Consensus 372 ~I~lwd~~~~~~~--~~~~~~~--~-v~~l~~sp~~~~l~~~~~---d-g~I~i~d~~~~-----~~~~~~~~h~~~I~~ 437 (545)
.|+.|.+.+.... ..+.... . ...+..++++.++++... + ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776433 3343322 2 567888999998876554 3 46889999874 333333323333344
Q ss_pred EEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCC-CCe
Q 009059 438 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 509 (545)
Q Consensus 438 l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~-~~~ 509 (545)
+... .+.+++... .+.|...++...........+..+...+.-..+...+.+|+....++ .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444544443 34677778777653223334444555444344444455566555444 89999999 555
Q ss_pred EEEecc-CCCCeeEEEEeCCCC
Q 009059 510 TLTLSA-HDKLVSSLAASTVNG 530 (545)
Q Consensus 510 ~~~~~~-h~~~V~~l~~spd~~ 530 (545)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 543332 334455655555554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.041 Score=56.81 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=102.0
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-e----eeeEeccCcccEEEEEEeCCC
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 360 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~----~~~~~~~h~~~V~~l~~~p~~ 360 (545)
.|.||+.. |+++..+.-..+.|.++.|..+. .|++...||.++++|+.... . .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 58999864 56665554333899999998754 56666799999999986322 0 011111111222223333333
Q ss_pred CcEEEEEcCCCcEEEEECCCCc-eeeEE-eccCC---------eeE-EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 361 EDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQSG---------ATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~-~~~~~-~~~~~---------v~~-l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
+++. ..++.+.+.+-.... ..+.+ ..... ... ..++.+....+....++.+.+.+...... +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 3322 224444443222211 11111 10010 111 23444444455555555666444332211 2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCC
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 489 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~ 489 (545)
. ..+++..++.||+|++||.-. +|.+.|.+..-. ..+.++... ......+.|.-+..
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 2 246899999999999999988 788888875443 344444433 34556777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0037 Score=68.19 Aligned_cols=141 Identities=9% Similarity=0.110 Sum_probs=98.8
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCccc-EEEEEEeC-----CCCcEEEEEcCCCcEEEEECCCCc--eee--
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 385 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~-V~~l~~~p-----~~~~ll~s~s~dg~I~lwd~~~~~--~~~-- 385 (545)
.++|+.- .....|+-.|++.++. +..+..|... |..++-.. .....+ .|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeecc
Confidence 3444443 3457889999998886 7777766644 55554321 122334 56668889999998532 221
Q ss_pred --EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 386 --VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 386 --~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
.+.......|++-+.+ ++|++|+.+|.|++||--..+....+.+-..+|..|+.+.||++|++.++..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2223344666766665 8999999999999999544444445667789999999999999999999998999886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.085 Score=56.34 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=87.5
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-EEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCCeeeeEec
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp---~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~ 345 (545)
..++.++.|+.|.-.|.++|+.+......... -..+.-+| ++ .++++. .+|.|..+|.++++...+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46677788999999999999998765421100 00111112 34 445443 268999999998875332111
Q ss_pred cC------------------------------cccEE-EEEEeCCCCcEEEEEcC----CC-----------cEEEEECC
Q 009059 346 GH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 379 (545)
Q Consensus 346 ~h------------------------------~~~V~-~l~~~p~~~~ll~s~s~----dg-----------~I~lwd~~ 379 (545)
.. ...++ .+.+.|..+.+++..++ ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 10 01122 23555554333322222 12 57778999
Q ss_pred CCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEE
Q 009059 380 NGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 425 (545)
Q Consensus 380 ~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~ 425 (545)
+|+....+.... ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999888776311 122233334555 5667888999999999999876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.044 Score=55.19 Aligned_cols=221 Identities=9% Similarity=0.090 Sum_probs=109.7
Q ss_pred CCCEEEEEe-CCCcEEEEEcCC----CeEEEEecc---CC----ccEEEEEEcCCCCEEEEEeC------CCeEEEEECC
Q 009059 274 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 335 (545)
Q Consensus 274 dg~~latg~-~dg~I~lwd~~~----~~~~~~l~~---h~----~~V~~l~~sp~~~~l~t~s~------dg~I~vwd~~ 335 (545)
+.++|+..+ ..+.|+|.|+.+ -++.++++. +. .....+..-|+|.+++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999873 344555542 11 22333444578888887632 2467777777
Q ss_pred CCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEc--------------------CCCcEEEEECCCCceeeEEeccCC
Q 009059 336 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCD--------------------NNSEIRYWSINNGSCAGVFKCQSG 392 (545)
Q Consensus 336 ~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s--------------------~dg~I~lwd~~~~~~~~~~~~~~~ 392 (545)
+... ...... ....-+.+-|.|..+ ++++.. ...++.+||+.+.+.+.++.....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6443 333332 123455677788654 444543 235899999999999999987643
Q ss_pred ---eeEEEEeC--CCCEEEEEE-CCCeEEEEEC-CCCE----EEEEecCC-----------------CCCEEEEEEcCCC
Q 009059 393 ---ATQMRFQP--RLGRILAAA-IENYISILDV-ETQV----CRLKLQGH-----------------KNQVHSVCWNTSG 444 (545)
Q Consensus 393 ---v~~l~~sp--~~~~l~~~~-~dg~I~i~d~-~~~~----~~~~~~~h-----------------~~~I~~l~~sp~g 444 (545)
+..+.|.. +..+=++++ ....|..|-- +.++ .+..+... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 55677754 444444433 3555555533 3332 22222211 2457999999999
Q ss_pred CEEEEEe--CCcEEEEEcCCCCCcceEEEEeeC----------------CCceEEEEEcCCCCEEEEEEc
Q 009059 445 EYLASVS--DELVRVWSIGSGSKGECIHELSCT----------------GNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 445 ~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~----------------~~~v~~~~~sp~~~~l~~~~~ 496 (545)
++|.... +|.|+.||+......+.+..+... .+...-+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 999999999987766666554321 123467888999998887754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00023 Score=73.09 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=77.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
.|.-+.|+|.-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|++++......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 46779999999999999999999999988 788888887877787 9999999999999999999999999988763332
Q ss_pred eccCcccEEEEEEeC
Q 009059 344 FTGHSTTVMSLDFHP 358 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p 358 (545)
...-...|.++.|.+
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 333456778888863
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0063 Score=65.39 Aligned_cols=207 Identities=13% Similarity=0.130 Sum_probs=114.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCCeeeeEeccCcccEEEEE
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s------~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~ 355 (545)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|.+++.. ........+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334678899999999887765 244 44444543 2222222332 378889
Q ss_pred EeCCCCcEEEEEc-----------CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE---EECCC
Q 009059 356 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 421 (545)
Q Consensus 356 ~~p~~~~ll~s~s-----------~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i---~d~~~ 421 (545)
|+|++..+.+... ..+.+.+.++..++... .....|..+.|+|+|.+++... ++.|++ -....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999776554432 22345555665554433 3346799999999999988776 577777 45445
Q ss_pred CEEEE----Eec-CCCCCEEEEEEcCCCCEEEEEeCC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 422 QVCRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 422 ~~~~~----~~~-~h~~~I~~l~~sp~g~~l~s~sdg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+.... .+. .-...+..+.|..++.+++...++ .+...++.... .....-......+..++-.+. .+++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 54111 122 223346889999999976554444 34444444221 111011112445666666653 46666
Q ss_pred EcCCeEE
Q 009059 495 GCYETLE 501 (545)
Q Consensus 495 ~~dg~I~ 501 (545)
..++.+.
T Consensus 557 ~~~g~~~ 563 (591)
T PRK13616 557 DARAVLQ 563 (591)
T ss_pred cCCceEE
Confidence 6666443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.04 Score=56.85 Aligned_cols=188 Identities=9% Similarity=0.096 Sum_probs=98.2
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----CCeeEE-E---E
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 398 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~v~~l-~---~ 398 (545)
.|+||+..... +..+.-..+.+.++.|..+ +.|+ .-..||.+++||+.. +. .+... ..+... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 47777766332 3332222378999999886 4555 445699999999873 33 22211 122222 1 1
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCE-EEEEe---cCCCC------CEEE-EEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 399 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~-~~~~~---~~h~~------~I~~-l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
..+.+ +++-+.++.+++..--... ....+ ..... .... ..++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12223 4444555655555332221 11111 11000 0000 22333444333333 445553432211
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCeeEEEEeCCCC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNG 530 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spd~~ 530 (545)
..+. ..+++..+++||++++++.-..+|.+.+...+-.+.. .+. .-......|.|.-++.
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 2468999999999999999999999998876555544 222 2235667777776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.18 Score=55.65 Aligned_cols=238 Identities=9% Similarity=-0.015 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEEC
Q 009059 266 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 334 (545)
Q Consensus 266 V~~l~~spdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~ 334 (545)
+..+.|+|||++||.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 5568899999998876432 3688889988764322211222 459999998877665442 36778888
Q ss_pred CCCCe-eeeEeccCcccEE-EEEEeCCCCcEEEEEc--CCCcEEEEECC--CCceeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 335 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 335 ~~~~~-~~~~~~~h~~~V~-~l~~~p~~~~ll~s~s--~dg~I~lwd~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
.++.. ....+........ .+..+.++..+++... .++.+.+|+.. .+.....+.....+..-... .+..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDH-YQHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEe-CCCEEEEE
Confidence 87621 1233333233333 2333436666664443 34678998853 34433333333333222222 23455554
Q ss_pred ECC----CeEEEEECCCCEEEEEecCC-C-CCEEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCcceEEEEe-eCCCc
Q 009059 409 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELS-CTGNK 478 (545)
Q Consensus 409 ~~d----g~I~i~d~~~~~~~~~~~~h-~-~~I~~l~~sp~g~~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~-~~~~~ 478 (545)
+.. ..|...++........+..+ . ..|..+.+. .+.++++.. ++ .+.+++.... .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 442 24555555521112223334 3 367888887 334444444 66 4555554322 222322 11222
Q ss_pred eEEEEEc--CCCC-EEEEEEcC---CeEEEEeCCCCeEE
Q 009059 479 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 511 (545)
Q Consensus 479 v~~~~~s--p~~~-~l~~~~~d---g~I~iwd~~~~~~~ 511 (545)
+..+.++ +++. .++..++. +.++.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3433 34333332 38899999877544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.045 Score=54.61 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=119.1
Q ss_pred EcCCCeEEEEeccCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCC
Q 009059 291 CTESFTVKSTLEEHTQWITD-----VRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 361 (545)
Q Consensus 291 d~~~~~~~~~l~~h~~~V~~-----l~~sp~~~~l~t~s~-dg--~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~ 361 (545)
|..+|..+..+..+...-.. =+|.++|+.|+.++. || .+.+.|+.+++ +..+.... .......++++..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 56677777666543332222 356778876665544 55 56666777655 45555433 2233566678877
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEeccCCee-EEEEe--CCCCEEEEEEC-----------------------CCeEE
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI-----------------------ENYIS 415 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-~l~~s--p~~~~l~~~~~-----------------------dg~I~ 415 (545)
.+++.. .+..|+-.|+.+.+....+..+.... ...|. .++.. +++.. ...|.
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 766554 35689999999988777776666543 34553 34333 43331 12377
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCE-EEEEeCC---c--EEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCC
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEY-LASVSDE---L--VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~-l~s~sdg---~--I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..|+.+++....+. ....+..+.|+|...- |+.|-+| . -|||-+++... ..++... .....+.-=-|.|+|
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDG 249 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCC
Confidence 77888887666555 4678889999997654 4444454 2 37787765321 1222211 122334444689999
Q ss_pred CEEEEEEc-----CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 489 PSLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 489 ~~l~~~~~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
..|..-+. +..|.-+|..+++...+..- .....+-.++||+++|-=+.|
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 87766443 22677788888765533222 234466668899888765554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0024 Score=69.66 Aligned_cols=127 Identities=9% Similarity=0.074 Sum_probs=91.4
Q ss_pred CCCeEEEEECCCCEEEEEecCCCCC-EEEEEEcC------CCCEEEEEeCCcEEEEEcCCCCCcceEEE-E--eeCCCce
Q 009059 410 IENYISILDVETQVCRLKLQGHKNQ-VHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHE-L--SCTGNKF 479 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~sp------~g~~l~s~sdg~I~vwd~~~~~~~~~i~~-~--~~~~~~v 479 (545)
....|+-.|++.|+.+..+..|... |..++-.. ....++.-+++.+..||.+-... .++.. . -.....+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCCc
Confidence 4578999999999999999887654 66554321 23445555688999999986432 22221 1 1245567
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.|++-+.+|. |++|+.+|.|++||--..+-. .+.+-..+|.+|..+.||++|+..+..
T Consensus 581 s~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 581 SCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred eEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 7887777775 999999999999995433322 555778999999999999988877654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.16 Score=55.67 Aligned_cols=272 Identities=13% Similarity=0.112 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~--~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
..|.-..|--|..+|.++..||.+.-|.+ .++..-..- .-...++.--.|+..++.-+.+..|+-..+|..+ ++.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcE
Confidence 34556666667889999999998876644 444433221 2235567667777665544445556666666654 233
Q ss_pred eeeEeccCcccEEEEE-Ee-CCCCcEEEEEcCCCcEEEEECCCCc--eeeEEeccCCeeEEEEeCCCCEEEEEEC-----
Q 009059 340 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI----- 410 (545)
Q Consensus 340 ~~~~~~~h~~~V~~l~-~~-p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~~~~~----- 410 (545)
....+. -..+..++ |+ +.....++++. .+.+++.-+..-. -++++........+++.+....+.+.+.
T Consensus 663 v~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 222221 11222222 22 22233454554 5668887766433 2344556667777888774333433332
Q ss_pred ------C---CeEEEEECCCCEEEEEecCC-CC---CEEEEEEcCC-CCEEEEEe-----------CCcEEEEEcCCCCC
Q 009059 411 ------E---NYISILDVETQVCRLKLQGH-KN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 465 (545)
Q Consensus 411 ------d---g~I~i~d~~~~~~~~~~~~h-~~---~I~~l~~sp~-g~~l~s~s-----------dg~I~vwd~~~~~~ 465 (545)
. ..++++|-.+-+.+...+-. .. .|.++.|..| +.++++|. .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 14777787776655543321 12 3455558776 67777764 25788888877544
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.+.+++... .+.+.++..- +|+ +.++-...|++|++.+.+.+ .-..|..++..+...-.+..++.|..-+.|.+
T Consensus 820 L~~v~e~~v-~Gav~aL~~f-ngk--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVV-KGAVYALVEF-NGK--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeee-ccceeehhhh-CCe--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 455555443 3334444322 343 45556668999999998666 44578889999999999999999987776654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.076 Score=54.19 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=56.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEE---EEcC-----CCeEEEEec---cCC--ccEEEEEEcC-----------CCCEEEEE
Q 009059 268 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 323 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~l---wd~~-----~~~~~~~l~---~h~--~~V~~l~~sp-----------~~~~l~t~ 323 (545)
+++.+|++++||.+..+..+.+ |+.. ......... .+. ..|+++.|-| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999987776665 6431 112222211 121 4677776643 45789999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~ 357 (545)
..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999875 443 33333467778777764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00036 Score=44.08 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 291 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd 291 (545)
.+..+..|...|.+++|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.12 Score=49.06 Aligned_cols=184 Identities=12% Similarity=0.074 Sum_probs=119.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 306 QWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
.-...+.|..++.++-+.+.-| .|+.+|+.+++..........----.++... +.++...-.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 3456688877777777777665 7999999998763333222233334455553 45666777889999999999999
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC-----CCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
+..+.....-..++ .++..|+.+.....|+++|.++.+....+.-. -..++-+.|- +|.+.|-.- ...|..
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 99998877767777 55678888888999999999887666555432 2256667775 566666555 778888
Q ss_pred EEcCCCCCcceEEEEee---------------CCCceEEEEEcCCCCEEEEEEcC
Q 009059 458 WSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~---------------~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
.|..++ .++..+.. ...-.+.+++.|....|++.|..
T Consensus 200 Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 200 IDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 898887 44443321 12457899999988777766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.037 Score=52.08 Aligned_cols=231 Identities=12% Similarity=0.091 Sum_probs=135.7
Q ss_pred EEEEcCCC-CEEEEEeCCCc-EEEEEcCCCeEEEEeccCCcc--EEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC
Q 009059 268 SCHFSPDG-KLLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 338 (545)
Q Consensus 268 ~l~~spdg-~~latg~~dg~-I~lwd~~~~~~~~~l~~h~~~--V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~ 338 (545)
.++|+|.- .-++.+-.-|+ ..++|....+...++...++. --.=.|+|||.+|+..-.| |.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 47788844 34566655554 567888877666554321111 1123599999999887443 789999999766
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEc------C-----------CCcEEEEECCCCceeeEEecc-----CCeeEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKCQ-----SGATQM 396 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s------~-----------dg~I~lwd~~~~~~~~~~~~~-----~~v~~l 396 (545)
..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+++.+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 556678888888888999999987765533 0 012344454555555544332 346777
Q ss_pred EEeCCCCEEEEEECCCe-----EEEEECCCCEEEEEecC-------CCCCEEEEEEcCCCCEEEEEe-C-CcEEEEEcCC
Q 009059 397 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-D-ELVRVWSIGS 462 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~-----I~i~d~~~~~~~~~~~~-------h~~~I~~l~~sp~g~~l~s~s-d-g~I~vwd~~~ 462 (545)
...+++..++.+-..|. -.+=-...++.+.-+.. ....|-+|+.+.+..+++..+ . +...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 88887554443332221 11111122222222211 123677888887777777777 4 4889999998
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+ ..+.... -.-++-.-+...-+++.+..|.+.++.-
T Consensus 312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred C---cEEeccc----ccccccceeccCceEEecCCceEEeccc
Confidence 8 3332211 1112222333344788888888887743
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.063 Score=52.79 Aligned_cols=219 Identities=11% Similarity=0.106 Sum_probs=129.3
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec--
Q 009059 269 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 345 (545)
Q Consensus 269 l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-- 345 (545)
-.|.++... +.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++... +.+++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEccc--cEEEeccCCce-eEEeccc
Confidence 346666664 444446678888888765433 222 22334555555555566665333 66677654443 12111
Q ss_pred --cC-cccEEEEEEeCCCCcEEEEEc-----C-----CCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC-
Q 009059 346 --GH-STTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI- 410 (545)
Q Consensus 346 --~h-~~~V~~l~~~p~~~~ll~s~s-----~-----dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~- 410 (545)
+. ....+.+...|+|...+-+-. . -|.|+.+|. .+..++.+.. -...+.++|+|+++.++.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 11 134567788888754442222 1 133444444 3444444443 344678999999988888877
Q ss_pred CCeEEEEECCC--C----E-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 411 ENYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 411 dg~I~i~d~~~--~----~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
.+.|+.|++.. + + ....+....+..-.++...+|.+.+++. .| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 48899888762 1 1 1222333456667788888998886555 44 89999987 5 666666666577788
Q ss_pred EEEc-CCCCEEEEEEcC
Q 009059 482 CVFH-PTFPSLLVIGCY 497 (545)
Q Consensus 482 ~~~s-p~~~~l~~~~~d 497 (545)
++|- ++.+.|++.+..
T Consensus 260 ~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 260 PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEeCCCcCEEEEEecC
Confidence 8874 455656655544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0088 Score=48.40 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=67.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 266 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 266 V~~l~~sp---dg-~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
|+++++.. || +.|++|+.|..|++|+-+ +.+..+..+ +.|+++.-... ..|+.+-.+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee---
Confidence 56676655 33 479999999999999854 566666644 45777776655 679999999999999875432
Q ss_pred eEeccCcccEEEEEEeC---CCCcEEEEEcCCCcEE
Q 009059 342 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIR 374 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p---~~~~ll~s~s~dg~I~ 374 (545)
...+ .+..+.++++.. +|..-|++|-.+|.|-
T Consensus 75 WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 222366666543 4444566787788664
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.023 Score=61.22 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=111.1
Q ss_pred CcccEEEEEEeCCCCcEEEEEc-----CC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC--------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 411 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s-----~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-------- 411 (545)
....+...+++|++..++++.. .| ..|.+++.. +.. ..+........-.|+|+++.+++....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346789999999998887762 23 356666653 333 333333447889999998877776532
Q ss_pred ----CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEE---EEcCCCCCcce--EEEEee-CCCceEE
Q 009059 412 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELSC-TGNKFHS 481 (545)
Q Consensus 412 ----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~v---wd~~~~~~~~~--i~~~~~-~~~~v~~ 481 (545)
+.+++.++..+.... .....|..+.|+|||..|+...++.|++ -....+. ... ...+.. ....+..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCcccc
Confidence 234334444333222 2356799999999999999888887777 3333332 011 111222 2334688
Q ss_pred EEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 482 CVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
+.|..++. |+++..++ .++..++.......+.. ....+.+|+-+++ .|+....+|.+.
T Consensus 502 l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99999998 45555555 34444555443322222 3566777777653 455556666544
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00059 Score=43.03 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.5
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=65.29 Aligned_cols=137 Identities=7% Similarity=0.101 Sum_probs=97.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|...|.--++...+++++.|+.-|.+.+|+-..+........+-.+.+..+..+++ ++++|.|+..|.|.++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence 44455556677788999999999999999988766544444444555666666766 57888888899999998876332
Q ss_pred ee-----EE--eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEc
Q 009059 384 AG-----VF--KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 384 ~~-----~~--~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~s 441 (545)
.. .. .+...|++++|++++..+++|...|.|....+.+. .....+....+.|..|.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 11 13456999999999999999999999999888772 1112223345677777654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.4 Score=53.03 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=106.5
Q ss_pred ccEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEE
Q 009059 306 QWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 375 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~-----dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~l 375 (545)
-.+..+.|+||+++|+.+.. .-.|++.|+.++......+.+- -..++|.++++.++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677889999998887643 2368889998765322333221 15699999988888775532 36888
Q ss_pred EECCCC--ceeeEEeccCC-ee-EEEEeCCCCEEEEEEC---CCeEEEEECC--CCEEEEEecCCCCCEEEEEEcCCCCE
Q 009059 376 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 376 wd~~~~--~~~~~~~~~~~-v~-~l~~sp~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
+++.++ +....+..... .. .+..+.++.+++..+. ++.+.+++.. .+.....+....+....+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 44444443222 22 2233447777665554 4578888853 3332222222222223332 333333
Q ss_pred EEEEe-CC-c--EEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEe
Q 009059 447 LASVS-DE-L--VRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 513 (545)
Q Consensus 447 l~s~s-dg-~--I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~ 513 (545)
++... +. . |...++.... ....+..+ ...+..+.+..+ ..+++...++ .+++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 3 4444443211 11223233 236777777632 3344444455 566677655544443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0079 Score=60.98 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=92.8
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC--------EEEEEeCCcEEEEEcCCCCCcceEEEEee----
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHELSC---- 474 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~--------~l~s~sdg~I~vwd~~~~~~~~~i~~~~~---- 474 (545)
.+.....|+-.|++.|+.+..+.-+.. |+-+.+.|+.+ .|+.-++..|.-||.+-... ..+.....
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQYS 428 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccccc
Confidence 344567899999999999999887766 77777777653 45555688999999885433 12222222
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
....+.|.+-..+| +|++|+.+|.|++||--...-. .+.+...+|..|..+.+|++|+..+..
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 23445666666565 5999999999999998333222 677888999999999999988776644
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.078 Score=48.56 Aligned_cols=206 Identities=12% Similarity=0.118 Sum_probs=111.7
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCC-cEEEEEcCCCcEEEEECCC--CceeeEE------
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVF------ 387 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~-~ll~s~s~dg~I~lwd~~~--~~~~~~~------ 387 (545)
.++.+--..|.|+-||+...+.....+.+. ++.++.+-- ++. .+.+.++..-.|--||-.. ....+++
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 344444456677779888765433333322 133333321 222 3344444444455577332 2222221
Q ss_pred eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC--------CCEEEEEEcCCCCEEEEEe--CCcEEE
Q 009059 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVRV 457 (545)
Q Consensus 388 ~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--------~~I~~l~~sp~g~~l~s~s--dg~I~v 457 (545)
......+.-..+|+|++ +.|.....-..+....+....-+.+|. .--+.++|+.+.+.+.... +-.|.-
T Consensus 106 ~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 11234566778899776 555532111122222333333333332 2335788988877766655 557777
Q ss_pred EE--cCCCCC--cceEEEEeeC----CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 458 WS--IGSGSK--GECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 458 wd--~~~~~~--~~~i~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
|| ..++.. ...+..++.. .-..-.+++..+|...+++-..++|..+|..+++.+ ++.-....|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 88 555432 2333333321 112234555678887777777789999999999988 565567889999996
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.044 Score=59.05 Aligned_cols=215 Identities=8% Similarity=0.024 Sum_probs=107.1
Q ss_pred cEEEEEcCCCeEE--EEeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCCeeeeEecc--CcccEEEEE
Q 009059 286 KAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTG--HSTTVMSLD 355 (545)
Q Consensus 286 ~I~lwd~~~~~~~--~~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~--h~~~V~~l~ 355 (545)
.+..||..+.+-. ..+...... .+++. -++.+++.|+.+ ..+..||..+... ..... ....-.+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence 5677887765422 122111111 12222 256777777754 3477888876543 11111 111111222
Q ss_pred EeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEECC-----------------
Q 009059 356 FHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE----------------- 411 (545)
Q Consensus 356 ~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~~d----------------- 411 (545)
.. ++.+.+.|+.++ .+..||..+.+....-...... .+++ .-++..+++|+.+
T Consensus 349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence 22 245666777654 4788998876543322222211 1111 2244555566543
Q ss_pred ------CeEEEEECCCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-CC------cEEEEEcCCCCCcceEEEEeeCC
Q 009059 412 ------NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 412 ------g~I~i~d~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg------~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
..+..||.++.+-. ..+...... .+++. -++++.+.|+ ++ .+..||..+......+..+....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24778888776432 222111111 12222 2466666665 32 46788887622233344333322
Q ss_pred CceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL 511 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~ 511 (545)
.....+++ +++..++||.++ .+..||..+++..
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 22222222 677778888887 7889999888766
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.18 Score=48.44 Aligned_cols=185 Identities=9% Similarity=0.018 Sum_probs=104.9
Q ss_pred cEEEEEEeCCCCcEEEEE--cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEE-CCCCEE-E
Q 009059 350 TVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-R 425 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~--s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d-~~~~~~-~ 425 (545)
.+.+.++++++..+.+.. .....++++.. +...........+....|++++...++...+....++. ..++.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999998887766 33445555544 33333332334788889999955555555566656663 333322 1
Q ss_pred EEecC--CCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCc------ceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 426 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 426 ~~~~~--h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~------~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
..+.. ....|..+.++|||..++... ++.|.+--+...... ..+.........+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11221 122899999999999888766 557777765433222 111222233567899999999987776
Q ss_pred EEcCCe-EEE-EeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 494 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 494 ~~~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+...+. +.. +....+....+..-...+..++...+...++..+
T Consensus 183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 666552 333 4444443333322222233333333333444333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.033 Score=59.88 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=120.4
Q ss_pred cCCCCEEEEEeCC------CcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Q 009059 272 SPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENP 337 (545)
Q Consensus 272 spdg~~latg~~d------g~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~ 337 (545)
+..+.+++.||.+ ..+..||..+.+-.. .+. +...-.++++. ++...++|+.| .++..||....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3345677777776 367788887753332 222 22223344444 45788888888 35677887766
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCCeeEEEEe-CCCCEEEEEECC
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAAAIE 411 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~~~~~d 411 (545)
... ....-...-..+....-++.+.++|+.|| .|-.||..+.+....-............ -++..+++|+.+
T Consensus 360 ~W~--~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 360 QWT--PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred cee--ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC
Confidence 542 12111111111112222356788888886 3667887765543333222222222222 244555666644
Q ss_pred C------eEEEEECCCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCC
Q 009059 412 N------YISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 412 g------~I~i~d~~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+ .+..||..+..-. ..+........ ++. -++.+.+.|+ |+ +|..||..+.+- ..+..+.....
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCccccc
Confidence 3 5788998876433 22222222222 332 2566666666 65 477888876521 22221221222
Q ss_pred ceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEE
Q 009059 478 KFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 511 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~ 511 (545)
.+.. ..-++...++|+.++ +|..||..+++..
T Consensus 515 ~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 515 AVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccE--EEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 2221 222455667777766 7888888777665
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.38 Score=49.31 Aligned_cols=260 Identities=13% Similarity=0.114 Sum_probs=142.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCe-----EEEEeccCCccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC--C---
Q 009059 274 DGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENP--D--- 338 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~-----~~~~l~~h~~~V~~l~~sp-----~~~~l~t~s~dg~I~vwd~~~~--~--- 338 (545)
+...|++|+..|.++||+..... ++.+ ..-..+|..|+.-. +...||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999975432 1111 12456788877642 2234444 45667888877321 1
Q ss_pred ---eeeeEeccCc--ccEEEEEEeC----CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 339 ---YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 ---~~~~~~~~h~--~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
..+.....|. .....+++-| .+..+++.-+.||.+.+|+-+.......+...--...+.|.+....|++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 2223333332 2334444433 235788899999999999976544444443323345678888888899999
Q ss_pred CCCeEEEEECCCCE--------------------E---EEEecCCCCCEEEE---EEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 410 IENYISILDVETQV--------------------C---RLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 410 ~dg~I~i~d~~~~~--------------------~---~~~~~~h~~~I~~l---~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
.+..|..|....-. . -.++. -...+..| .++.....+++-++..+.+.+-. |
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G 271 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G 271 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C
Confidence 99998888653110 0 00111 11233333 33334445555556666666653 2
Q ss_pred CCcceEEEEeeCCCceEEE-EE----cCCC---CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEE---EeCCCCEE
Q 009059 464 SKGECIHELSCTGNKFHSC-VF----HPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMV 532 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~-~~----sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~---~spd~~~l 532 (545)
.......+ .....++ .| ...+ ..+++++.++.+.||.=.+.....-..| .+ .+|. |..-...|
T Consensus 272 -~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~-~P-Val~v~~~~~~~G~I 345 (418)
T PF14727_consen 272 -SLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPH-VP-VALSVANFNGLKGLI 345 (418)
T ss_pred -eEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCC-CC-EEEEecccCCCCceE
Confidence 11222222 2222222 12 1122 2488999999999996433322211122 22 2333 22335688
Q ss_pred EEEeCCCcEEE
Q 009059 533 ASASHDKCVKI 543 (545)
Q Consensus 533 as~s~Dg~I~i 543 (545)
++-+.+|.+.+
T Consensus 346 V~Ls~~G~L~v 356 (418)
T PF14727_consen 346 VSLSDEGQLSV 356 (418)
T ss_pred EEEcCCCcEEE
Confidence 88888998865
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=66.18 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=75.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE-EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~-~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
-.|.-+.|+|.-.+||++..+|.|.+..+. .. .+.++.-|...++ +++|.||| .+++.|-.||+|++.|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQ-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cc-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence 457889999999999999999999999888 33 3667776666777 99999996 57779999999999999999887
Q ss_pred eE--EeccCCeeEEEEeC
Q 009059 385 GV--FKCQSGATQMRFQP 400 (545)
Q Consensus 385 ~~--~~~~~~v~~l~~sp 400 (545)
.. +.....+.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 76 45556677777764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.033 Score=59.88 Aligned_cols=218 Identities=11% Similarity=0.062 Sum_probs=115.8
Q ss_pred CCCEEEEEeCC------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCce
Q 009059 316 SLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSC 383 (545)
Q Consensus 316 ~~~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~ 383 (545)
.+.+++.|+.+ ..+..+|..++......-......-.++++.. +.++++|+.| ..+..||..+.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 35566777666 36778888876442222122333445566654 3677788888 3577888887764
Q ss_pred eeEEeccCCeeEEEEe-CCCCEEEEEECCC-----eEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC-
Q 009059 384 AGVFKCQSGATQMRFQ-PRLGRILAAAIEN-----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE- 453 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~s-p~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg- 453 (545)
...-.....-...... -+|..+++|+.|| .+..||.++.+-.. .+.......-.+. -+|++.++|+ ++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCC
Confidence 4422222222222222 2445666777776 58888887654322 2221111111122 2577667666 44
Q ss_pred -----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEeccCCCCeeEE
Q 009059 454 -----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSL 523 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l 523 (545)
.+..||..+..- ..+..+........ ...-++...++||.++ +|..||..+.+...+..-......+
T Consensus 440 ~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred ccccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 577888776521 22222221111111 2233556667777665 5888999988877443222222222
Q ss_pred EE-eCCCCEEEEEeCCCc
Q 009059 524 AA-STVNGMVASASHDKC 540 (545)
Q Consensus 524 ~~-spd~~~las~s~Dg~ 540 (545)
.. .-++.+.++|+.||.
T Consensus 517 g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred cEEEECCEEEEEecccCc
Confidence 11 224677788888864
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.1 Score=54.07 Aligned_cols=145 Identities=12% Similarity=0.142 Sum_probs=90.9
Q ss_pred CCCeEEEEEcCC----C-CEEEEEeCCCcEEEEEcC-----CCeEEEEec-cCCc----cEEEEEEcCCCCEEEEEeCCC
Q 009059 263 TSKVESCHFSPD----G-KLLATGGHDKKAVLWCTE-----SFTVKSTLE-EHTQ----WITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 263 ~~~V~~l~~spd----g-~~latg~~dg~I~lwd~~-----~~~~~~~l~-~h~~----~V~~l~~sp~~~~l~t~s~dg 327 (545)
-..|..++|.|- . .+||+ -..+.|.||.+. ..+.+..-. .... --..+.|+|....|++-....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 345889999994 3 35554 567899999874 223222111 1111 123467999988888776665
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-----eeEEeccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-----AGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-----~~~~~~~~~v~~l~~sp~~ 402 (545)
.-.++++......++.-....+.|.|.+|.+||..++++.+..=.-++||-..... ...|...+.|.++.-.-+
T Consensus 135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d- 213 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD- 213 (671)
T ss_pred eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-
Confidence 55666666544444444456788999999999999988777677788998654321 223444555666655554
Q ss_pred CEEEEEE
Q 009059 403 GRILAAA 409 (545)
Q Consensus 403 ~~l~~~~ 409 (545)
..+++++
T Consensus 214 sqVAvaT 220 (671)
T PF15390_consen 214 SQVAVAT 220 (671)
T ss_pred ceEEEEe
Confidence 4455544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.18 Score=49.37 Aligned_cols=203 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred CceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-EEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 249 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 249 ~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.|..+..+..-..-.+....+....++..++ ++..|.|+.= .+.++.- .....-...+..+..+++|++++++....
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 3455555432222222333344434443333 3344543332 1223222 22344557789999999999999987777
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC-CCCceeeE--E---eccCCeeEEEEeCC
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV--F---KCQSGATQMRFQPR 401 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~-~~~~~~~~--~---~~~~~v~~l~~sp~ 401 (545)
...-||-..... ...-..-...|..|.|.|++. +.+.+ ..|.|++=+. ...+.-.. . ...-.+..++|.++
T Consensus 167 ~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 167 FYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEEecCCCccc-eEEccCccceehhceecCCCC-EEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 777888764433 222233567899999999964 44333 7888888772 22221111 1 11223788999988
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEE---ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 402 LGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~---~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
+.+.+++..|.+.+ ....++.-.. ...-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 244 -~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 -NEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -S-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred -CCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 55555666665443 3333332222 2233457889999888888999999977655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.24 Score=47.16 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=118.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
+.+-...|.++.|+|+.+.|++......-.||=...|+.+.++.- .-.....|.|..++.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344455599999999999998888888888888788999887742 1223456788878887777777888888877654
Q ss_pred Cee---------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---e--------ccCCeeEEE
Q 009059 338 DYS---------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K--------CQSGATQMR 397 (545)
Q Consensus 338 ~~~---------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~--------~~~~v~~l~ 397 (545)
... +............++|.|....++ .+-+-.-+.+|.+......... . .-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 321 112222255678999999987777 4444555666665533211000 0 013467788
Q ss_pred EeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEe
Q 009059 398 FQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 398 ~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~s 451 (545)
|++..+.+++-+ .++.|.-.|..... +..+.-+. ...-.|+..++|.+.+++.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 888666666555 46677777766442 32222111 1234566666665555444
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=47.57 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=103.3
Q ss_pred EEEEEeCCCcEEEEEc--CCCeEEEEecc-----CCccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCCee
Q 009059 277 LLATGGHDKKAVLWCT--ESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYS 340 (545)
Q Consensus 277 ~latg~~dg~I~lwd~--~~~~~~~~l~~-----h~~~V~~l~~sp~~~~l~t~s~---------dg~I~vwd~~~~~~~ 340 (545)
+.+.++..-.|.=||. +.....+++.. ...+.++-..+|+|++++-.-. .|.++.|-....
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--- 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--- 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence 4444444444555773 33334444321 2345666778899998443222 245555554321
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE--CCCCce-----eeEEecc-----CCeeEEEEeCCCCEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSC-----AGVFKCQ-----SGATQMRFQPRLGRILAA 408 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd--~~~~~~-----~~~~~~~-----~~v~~l~~sp~~~~l~~~ 408 (545)
+..+...-.--+.++|+.+.+.+.++-+.+-+|.-|| ..+|.. +..++.. -..-.+++..+|+.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2233333344567899988777888888888998887 555432 2222211 113456667787888888
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
-..++|..+|..+++.+.++.-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8899999999999999999998899999999964
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00092 Score=60.67 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=81.8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEe-ccCCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~-~~~~v~~l 396 (545)
.|..-+.||.|+-+++...+...+.-..|...-.-+.+ ..-++.|..+|.|++|+..-.... ..+. ....+.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445678888888776544333332323322111222 233558888999999988722111 1111 11222222
Q ss_pred -EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-CCEEEEEEcCCCCEEEEE--e-CCcEEEEEcCCC
Q 009059 397 -RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG 463 (545)
Q Consensus 397 -~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~I~~l~~sp~g~~l~s~--s-dg~I~vwd~~~~ 463 (545)
....++.+..+++.+|.|+.|++.-.+.+-....|. .++..+..+..+++|+.. + |..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222344577788899999999999887776666676 555555555666666666 4 667777777543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.47 Score=47.55 Aligned_cols=233 Identities=13% Similarity=0.147 Sum_probs=118.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE---EEEe----ccCCccEEEEEEcCC---CCEEEEEeC-C-------
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D------- 326 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~---~~~l----~~h~~~V~~l~~sp~---~~~l~t~s~-d------- 326 (545)
..+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999988775 5699999999 44443 2222 234567899999994 334443332 1
Q ss_pred -CeEEEEECCCC-------CeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCC------------CcEEEEECCCCce
Q 009059 327 -RTVRVWDTENP-------DYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC 383 (545)
Q Consensus 327 -g~I~vwd~~~~-------~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~d------------g~I~lwd~~~~~~ 383 (545)
..|.-|.+... +..+..+.. ....-..|.|.|++..++.+|+.. |.|.-.+.. +..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444444433 111122222 223456799999984444333321 233333332 110
Q ss_pred -------------eeEEe-ccCCeeEEEEeCCCCEEEEEEC--CC--eEEEEECC--------C------C---------
Q 009059 384 -------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q--------- 422 (545)
Q Consensus 384 -------------~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg--~I~i~d~~--------~------~--------- 422 (545)
...+. .......++|+|..+.|+++.. ++ .|.+.... . +
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 01111 1123567999998566666543 22 23332110 0 0
Q ss_pred ----EEEEEecCCCCCEEEEEEcC-------CCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCC
Q 009059 423 ----VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 423 ----~~~~~~~~h~~~I~~l~~sp-------~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~ 489 (545)
.++..+.. ...+..+.|.. .|.++++.. .+.|....+...........+ ......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 12333433 35667777754 345666655 568888887644221222222 23344789999999998
Q ss_pred EEEEEEcCCeEE
Q 009059 490 SLLVIGCYETLE 501 (545)
Q Consensus 490 ~l~~~~~dg~I~ 501 (545)
.+++...+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 777777777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.36 Score=45.80 Aligned_cols=179 Identities=9% Similarity=0.019 Sum_probs=109.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAA-IENYISILDVETQVC 424 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~ 424 (545)
-...+.|..++ .++-+.+.-| .|+.+|+.+++.......+... ..++... +.++--+ .++...+||..+.+.
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE
Confidence 35577885554 5666766555 7999999999988877766653 3344443 4555555 489999999999988
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC---ceEEEEEcCCCCEEEEEEcCCeE
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---KFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~---~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
+.++. ..+.=..++ .++..|+... ...++++|..+.+....+... .... .++-+.|. +|...+=.-....|
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 88876 345567777 3455555444 778999998776432222221 2222 34455665 45444444455688
Q ss_pred EEEeCCCCeEEEec------c-------C---CCCeeEEEEeCCCCEEEEEe
Q 009059 501 ELWNMTENKTLTLS------A-------H---DKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 501 ~iwd~~~~~~~~~~------~-------h---~~~V~~l~~spd~~~las~s 536 (545)
...|..+|++.... . + ..-.+.||+.|..+.|...|
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999999887321 0 1 34689999998876554444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.079 Score=42.97 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=69.6
Q ss_pred EEEEEE---eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 351 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 351 V~~l~~---~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
|+++++ ..+|..-|++|+.|..|++|+- .+.+..+.....++.++-... +.++.+..+|+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 455554 4456677779999999999974 477888888888999988877 7899999999999998643 2333
Q ss_pred ecCCCCCEEEEEEcC-C--C-CEEEEEe-CCcEE
Q 009059 428 LQGHKNQVHSVCWNT-S--G-EYLASVS-DELVR 456 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp-~--g-~~l~s~s-dg~I~ 456 (545)
.+. +..+.++++.. + | .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 332 33466666543 2 2 2455554 77654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.57 Score=46.95 Aligned_cols=270 Identities=7% Similarity=0.004 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
...+++|+|..+.+-+|+|. ++.|.. ..+.|+.-... ......+.++.|.++ ..++++ ..+. ||..+++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCce--EEEECCCC
Confidence 45788999986666666664 454332 11222222211 112344778888643 344443 4443 33333332
Q ss_pred eeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 339 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 339 ~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
....... ........+..... ..+++.+ ..|.|.. ..+.++.-..+. ....+..+.+.+++ .+++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCce
Confidence 2222221 01112222222222 2233333 3443432 222222222111 13457788888874 5556666676
Q ss_pred EEEE-ECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEE
Q 009059 414 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 414 I~i~-d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l 491 (545)
+..- |-....-..........++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5543 2221111122223456889999999999888887876653233444322221111 01224578889998776 5
Q ss_pred EEEEcCCeEEEEeCCCCeEE-Ee---ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 492 LVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~-~~---~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++++.+|.|.. ....++.- .. ..-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 274 ~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 66667776653 44444433 22 12224577888876666655 45678776653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.019 Score=58.28 Aligned_cols=142 Identities=9% Similarity=0.109 Sum_probs=98.0
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc-------EEEEEcCCCcEEEEECCCCce--ee
Q 009059 316 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-------LLCSCDNNSEIRYWSINNGSC--AG 385 (545)
Q Consensus 316 ~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-------ll~s~s~dg~I~lwd~~~~~~--~~ 385 (545)
+.++|+ ++.....++-.|++.++. +..+.-+.. |.-+.+.|+.+. -| .|-.+..|.-||.+-... +.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKI-VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKI-VEEWKFEDD-INMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeeccccee-eeEeeccCC-cceeeccCCcchhcccccccE-EeecCCceEEecccccCcceee
Confidence 334443 444556688888988875 777776665 777777776421 23 455578899999873221 11
Q ss_pred -----EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 386 -----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 386 -----~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
.+.......|.+-..+ +++++|+.+|.|++||--.......+.+-..+|..|..+.+|++|++.++..+.+.++
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 1122233445555444 8999999999999999844444556777889999999999999999999988888776
Q ss_pred C
Q 009059 461 G 461 (545)
Q Consensus 461 ~ 461 (545)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.56 Score=44.66 Aligned_cols=270 Identities=10% Similarity=0.047 Sum_probs=145.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+-+..+.++ +++...+..+.-++|.|+.+-.....+. ...+.-.++.. .|++...+..|.-+.+.|+.+...+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 4466777778889999987643322221 12233445555 57888888877778889998776543
Q ss_pred e--EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc---eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 342 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 342 ~--~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
. .+.........++.+ |+ ..+.+..|+-+.+.|+.+.. .+........+..+..+++ +.+..-.+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 333344445677777 33 34455668889999997643 3333444446777777665 4444444555677
Q ss_pred EECCCCEEEEEecC-CCCCEEEE-EEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 417 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 417 ~d~~~~~~~~~~~~-h~~~I~~l-~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
.|..+.+....+.. ....+.++ .+.-.+++..... +.-+.+-|+.+.........+...+..-..+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 77776553333221 12222222 2223455555555 5566677776543322222222222122222222 222333
Q ss_pred EEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+ ...+.|....+.. ...+....+.+.+.+-+.+++.+...++-+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3344444333322 1222223344445555566888999999999985
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.084 Score=49.79 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=103.9
Q ss_pred CceeeEEeccCCeeEEEEeCCCCEEEE-EECCC-eEEEEECCCCEEEEEecCCCC--CEEEEEEcCCCCEEEEEe-----
Q 009059 381 GSCAGVFKCQSGATQMRFQPRLGRILA-AAIEN-YISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS----- 451 (545)
Q Consensus 381 ~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg-~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s----- 451 (545)
++++...........+.|+|....-++ +-.-| ...+||.........+...++ ..-.=+|+|||.+|+...
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 455555666666777888886555333 33444 577899888765554432222 112246999999999875
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------------------CeEEEEeCCCCeEE-
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------------------ETLELWNMTENKTL- 511 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------------g~I~iwd~~~~~~~- 511 (545)
.|.|-|||.+.+ ...+.++..|.-....+.|.+||+.++++... -++.+.|..++.++
T Consensus 138 ~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 138 NRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 248999999843 46788888899899999999999988776541 13445555555554
Q ss_pred --Eec--cCCCCeeEEEEeCCCCEEEEEeC
Q 009059 512 --TLS--AHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 512 --~~~--~h~~~V~~l~~spd~~~las~s~ 537 (545)
++. .+.-.|..++..+||..++.+-+
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 233 35567888998888876665543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.039 Score=60.73 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=71.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 352 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~-~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~ 352 (545)
-+.+++.|+..|.|...|.... .....=+.-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998899988887542 21122233467899999999999999999999999999998764 777776666655
Q ss_pred EEEE---eCCCCcEEEEEcCCCcEEEEEC
Q 009059 353 SLDF---HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 353 ~l~~---~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
.+-+ ..++ ..+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 5544 3333 34557776665 4543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.88 Score=44.60 Aligned_cols=268 Identities=10% Similarity=0.080 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--cC---CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--~h---~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...+..|+|..+..-+|+|. .+.| +-..+.|+.-.... .. .-...+|.|..+ ..+++| ..+ +.+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCC
Confidence 34789999996666666654 4543 22223332221111 11 224667788643 344444 455 333333323
Q ss_pred CeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCC
Q 009059 338 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 338 ~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
. ....+. .-.+....+....++ ..++.+ ..|.|+. ..+.++.-..+. ....+..+..++++.+++++....
T Consensus 91 ~-tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 K-TWERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp S-S-EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred C-CcEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 2 222221 122344444444443 333333 3454432 223333222222 234577888888877666665556
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE----EeeCCCceEEEEEcCCC
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~----~~~~~~~v~~~~~sp~~ 488 (545)
.+.-||.....-...-......|..+.|.|++.+.+.+..+.|++=+.... ...... +......+..++|.+++
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCC
Confidence 666788654322222223467999999999999888777778888772211 011111 11233457899999887
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEec----cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
. +.+++..|.+ +...+.++.-... .-...+..|.|.++.+-+|. +.+|.|.-|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 6 5556666655 4445555544222 33556888998766554544 567877655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.19 Score=54.26 Aligned_cols=202 Identities=8% Similarity=-0.004 Sum_probs=95.4
Q ss_pred eEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCCe-eEEEEe
Q 009059 328 TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 399 (545)
Q Consensus 328 ~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~v-~~l~~s 399 (545)
.+..||..+..... ..+.. ...-.+++.. ++.+++.|+.+ ..+..||+.+......-...... ......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-HIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-cccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 46778877655311 11111 1111223333 24566677643 34778898776543221111111 111222
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC------------------
Q 009059 400 PRLGRILAAAIEN-----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE------------------ 453 (545)
Q Consensus 400 p~~~~l~~~~~dg-----~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg------------------ 453 (545)
-++..+++|+.++ .+..||..+..-.. .+.........+. -+|++.+.|+ ++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3445666676543 48889988764322 2221111122222 2567666666 42
Q ss_pred -----cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC------CeEEEEeCCC-CeEEEe---ccCCC
Q 009059 454 -----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTL---SAHDK 518 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~I~iwd~~~-~~~~~~---~~h~~ 518 (545)
.+..||..+.. ...+..+.. ......+..-+++..++||.+ ..+..||..+ ++.... .....
T Consensus 428 ~~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNI-WETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCe-EeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 36677776542 111111111 111112223345555566543 2478899987 555422 22222
Q ss_pred CeeEEEEeCCCCEEEEEeCCC
Q 009059 519 LVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 519 ~V~~l~~spd~~~las~s~Dg 539 (545)
....+. -++++.++||.||
T Consensus 505 ~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 ALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred cceeEE--ECCEEEEEeeecc
Confidence 222222 2678889999888
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.73 Score=44.01 Aligned_cols=160 Identities=12% Similarity=0.150 Sum_probs=99.9
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+.+-...|.++.|+|+.+.|++......-.||=..++.. +++..- .-.....|.+..++ .++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 344455699999999999988887777777776555664 544331 12334566776654 455566678888888776
Q ss_pred CCceeeE-----Ee-----c-cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE---EEEecCCC-------CCEEEE
Q 009059 380 NGSCAGV-----FK-----C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHK-------NQVHSV 438 (545)
Q Consensus 380 ~~~~~~~-----~~-----~-~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~-------~~I~~l 438 (545)
....+.. +. . +.+...++|.|....|+++-..+-+.||.+..... ......+. ..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 5532221 11 1 34577899999999999998888777777653321 11111111 246777
Q ss_pred EEcCCC-CEEEEEe-CCcEEEEEcCC
Q 009059 439 CWNTSG-EYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 439 ~~sp~g-~~l~s~s-dg~I~vwd~~~ 462 (545)
.|++.. .+|+.+. ++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 887654 4444444 55666666543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.1 Score=45.05 Aligned_cols=187 Identities=15% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc----CCCCE--EEEEe-CC---CeEEEEECCCCCeeeeE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLRT 343 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s----p~~~~--l~t~s-~d---g~I~vwd~~~~~~~~~~ 343 (545)
...+++....++-+.+||+.. +.+..+.. +.++.+... -+++. |+.++ .+ .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 445777777888999999865 55555532 233333321 13332 44443 32 47999987642222433
Q ss_pred ecc-------CcccEEEEEEe--C-CCCcEEEEEcCCCcEEEEECC---CC----ceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 344 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 344 ~~~-------h~~~V~~l~~~--p-~~~~ll~s~s~dg~I~lwd~~---~~----~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|.....+..+......+.|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12347777774 3 355667778889988888774 23 4678888888999999999999999
Q ss_pred EEECCCeEEEEECCC-----CEEEEEecC--CCCCEEEEEEc--CCC-CEEEEEe--CCcEEEEEcCCC
Q 009059 407 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWN--TSG-EYLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~I~~l~~s--p~g-~~l~s~s--dg~I~vwd~~~~ 463 (545)
++-.+--|..|+.+- +..+....+ ....|-.|++- .++ .||++.+ ++...||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999999999862 233333322 34567777764 343 3666666 779999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.48 E-value=1.9 Score=47.64 Aligned_cols=216 Identities=11% Similarity=0.067 Sum_probs=128.8
Q ss_pred EEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCCCcEEEEEcC-----------C---CcEEEEECCCCce
Q 009059 319 RLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSC 383 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----------d---g~I~lwd~~~~~~ 383 (545)
.|+++. .+.+++.-++.-. ..+++.. -......+++.+.. .++++.+. . ..++++|-++.+.
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 455553 4457776665322 2234433 33455667776632 23323221 1 2467777777666
Q ss_pred eeEEeccC-----CeeEEEEeCC-CCEEEEEEC----------CCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCC
Q 009059 384 AGVFKCQS-----GATQMRFQPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGE 445 (545)
Q Consensus 384 ~~~~~~~~-----~v~~l~~sp~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~ 445 (545)
+...+... .+.++.|..+ +.++++|+. .|.|.+|.......+..... -.+.+.++.. -+|+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk 841 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK 841 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe
Confidence 65444322 2455568777 566666652 47888888776333222221 2345555543 2455
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEE--EeccCCCCee
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVS 521 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~--~~~~h~~~V~ 521 (545)
+|| +-...|++|+..+. +.++.-..+...+..+...-.+..+++|..-+.+.+ |+..++... .-.-+..+++
T Consensus 842 llA-~In~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmt 917 (1096)
T KOG1897|consen 842 LLA-GINQSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMT 917 (1096)
T ss_pred EEE-ecCcEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCcccee
Confidence 554 44668999999876 455555567788999999999999999999886555 555554455 3345778888
Q ss_pred EEEEeCCCCEEEEEeCCCcEEE
Q 009059 522 SLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~i 543 (545)
++.+-.+.. ++.+..+|.+++
T Consensus 918 aveil~~d~-ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 918 AVEILDDDT-YLGAENSGNLFT 938 (1096)
T ss_pred eEEEecCce-EEeecccccEEE
Confidence 888865554 444556666654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.5 Score=48.90 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc--------EEEEEEcC----------------CCCEEEEEeCCCeEE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 330 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~--------V~~l~~sp----------------~~~~l~t~s~dg~I~ 330 (545)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888988999999888776432211 11233321 234788888999999
Q ss_pred EEECCCCCeeeeEeccCcccEE-------------EEEEeC--CCCcEEEEEc----------CCCcEEEEECCCCceee
Q 009059 331 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 385 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~-------------~l~~~p--~~~~ll~s~s----------~dg~I~lwd~~~~~~~~ 385 (545)
-.|.++++.+ ..+. ..+.|. .+.-.| .++.++ .|+ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~-W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLC-EDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEE-EEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 9999998863 3322 111110 011111 122333 443 26889999999999988
Q ss_pred EEeccCC------------------e-eEEEEeCCCCEEEEEE------------------CCCeEEEEECCCCEEEEEe
Q 009059 386 VFKCQSG------------------A-TQMRFQPRLGRILAAA------------------IENYISILDVETQVCRLKL 428 (545)
Q Consensus 386 ~~~~~~~------------------v-~~l~~sp~~~~l~~~~------------------~dg~I~i~d~~~~~~~~~~ 428 (545)
.+..... + ..++++++.+.++... ..+.|.-.|+++++.+..+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 7753110 0 2345666655555432 1346778899999988877
Q ss_pred cCCCC---------CEEEEEEcC-CCC---EEEEEe-CCcEEEEEcCCCCC
Q 009059 429 QGHKN---------QVHSVCWNT-SGE---YLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 429 ~~h~~---------~I~~l~~sp-~g~---~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+.... ...-+.+.. +|+ .++.+. +|.+.++|-++++.
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 65111 111122322 553 677777 89999999999854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.1 Score=43.23 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC-------CCeEEEEecc-----CCccEEEEEEcCCC------------CEEE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSL------------SRLA 321 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~-------~~~~~~~l~~-----h~~~V~~l~~sp~~------------~~l~ 321 (545)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+... ..++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4569999999888888788999999986 1223344432 23457778887432 2367
Q ss_pred EEeCCCeEEEEECCCCCe----eeeEec-cCcccEE-EEEEe--CCCCcEEEEEcCCCcEEEEECCCCcee--eEEecc-
Q 009059 322 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTVM-SLDFH--PSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQ- 390 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~----~~~~~~-~h~~~V~-~l~~~--p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~~~- 390 (545)
.+++||+|.-|...-... ....+. ...+.|+ .+++. ..+..|.++--..++|.+||-.-.... ..+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532211 112222 1123343 34444 334556656567889999985422211 011100
Q ss_pred --C-----C---------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcC------CCCE
Q 009059 391 --S-----G---------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 446 (545)
Q Consensus 391 --~-----~---------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp------~g~~ 446 (545)
. . |+-..-.++...=+.+..-|.|.+||+... .++++. +.-...+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0 111112222222333444578999998744 444442 2334556777755 4566
Q ss_pred EEEEe-CCcEEEEEcCCC
Q 009059 447 LASVS-DELVRVWSIGSG 463 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~ 463 (545)
|+.-- ||+|..||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 66555 999999999877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.29 Score=50.89 Aligned_cols=177 Identities=13% Similarity=0.190 Sum_probs=107.2
Q ss_pred ccEEEEEEeCCCCcEEEEEc--CCCcEEEEECCCCceeeEEeccCCeeEEEEeCC----CCEEEEEECCCeEEEEECCC-
Q 009059 349 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 421 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~----~~~l~~~~~dg~I~i~d~~~- 421 (545)
.++..++|. ||+.++.+.- .+|++++=| ...+..| ..|..+.|.|- ...+++.-....|.||.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468889996 4556655542 344444433 2233333 56888899885 34688888999999998752
Q ss_pred ----CEEEEEecCC-C--C--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 422 ----QVCRLKLQGH-K--N--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ----~~~~~~~~~h-~--~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
.+.+..-..+ . - -...+.|+|....|++-. .+.-.++++..... .....+ ...+-|.|.+|.+||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEE
Confidence 2222221111 1 1 124578999999998877 44445666655432 222233 456789999999999988
Q ss_pred EEEEcCC-eEEEEeCCCCeEE-----EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 492 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 492 ~~~~~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spd~~~las~ 535 (545)
+++-... .-+|||-...... .+..-.+.|.+|.-.-| ..+|.+
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqVAva 219 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQVAVA 219 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ceEEEE
Confidence 7776655 7889987554322 23344556666654332 244444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.6 Score=48.60 Aligned_cols=146 Identities=6% Similarity=-0.003 Sum_probs=83.9
Q ss_pred EEEEEcCCCcEEEEECCCCceeeEEeccCCee-------------EEEEeC--CCCEEEEEEC----------CCeEEEE
Q 009059 363 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 417 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-------------~l~~sp--~~~~l~~~~~----------dg~I~i~ 417 (545)
.++.++.|+.|.-.|.++|+.+..+...+.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 44577789999999999999987765433221 111112 2356777653 5889999
Q ss_pred ECCCCEEEEEecCC---------CCC--------E-EEEEEcCCCCEEEEEe-------------------CCcEEEEEc
Q 009059 418 DVETQVCRLKLQGH---------KNQ--------V-HSVCWNTSGEYLASVS-------------------DELVRVWSI 460 (545)
Q Consensus 418 d~~~~~~~~~~~~h---------~~~--------I-~~l~~sp~g~~l~s~s-------------------dg~I~vwd~ 460 (545)
|+++++.+..+..- .+. + ...++++...+++.+. .+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988776421 011 1 1233444433333321 124555556
Q ss_pred CCCCCcceEEEEee--CC-------CceEEEEEcC-CCC---EEEEEEcCCeEEEEeCCCCeEE
Q 009059 461 GSGSKGECIHELSC--TG-------NKFHSCVFHP-TFP---SLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 461 ~~~~~~~~i~~~~~--~~-------~~v~~~~~sp-~~~---~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
++++. .-.+.. |. ....-+.+.. +++ .++.++.+|.++++|.++++.+
T Consensus 422 ~TGk~---~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKE---RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCce---EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 55532 222211 11 0111112222 453 7888999999999999999887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.35 Score=49.45 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=48.4
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE-EEEc-CC----------------CCEEEEEe--C
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCWN-TS----------------GEYLASVS--D 452 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~-l~~s-p~----------------g~~l~s~s--d 452 (545)
+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.=.. +... .. ..+|+.-. .
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 678999999776666666799999999999888888775542111 1110 10 12344433 7
Q ss_pred CcEEEEEcCCC
Q 009059 453 ELVRVWSIGSG 463 (545)
Q Consensus 453 g~I~vwd~~~~ 463 (545)
|.|.||.++.+
T Consensus 390 g~lEvW~~~~g 400 (415)
T PF14655_consen 390 GILEVWSMRQG 400 (415)
T ss_pred CeEEEEecCCC
Confidence 79999999887
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.1 Score=45.05 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=87.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEE-EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~v-wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4568899999988776665 4554432 22221112 122223456789999999865 44344 467665323444433
Q ss_pred eeEEec-----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCcE
Q 009059 384 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 455 (545)
Q Consensus 384 ~~~~~~-----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~~I~~l~~sp~g~~l~s~sdg~I 455 (545)
-..... ...+..+.+.+++ .+++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPG-EIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCC-CEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222221 1346778888874 4666667776654 33433332222 122246888888888889998889988
Q ss_pred EEEEc
Q 009059 456 RVWSI 460 (545)
Q Consensus 456 ~vwd~ 460 (545)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.26 Score=52.98 Aligned_cols=197 Identities=10% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCCEEEEEeCCC------eEEEEECCCCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCC
Q 009059 316 SLSRLATSSADR------TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNG 381 (545)
Q Consensus 316 ~~~~l~t~s~dg------~I~vwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~ 381 (545)
++..++.|+.++ .+..||..+... ..+.. ..... +++.. ++.+++.|+.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 455666665532 467778776543 22211 11111 22222 24566677654 34777888766
Q ss_pred ceeeEEeccCC--eeEEEEeCCCCEEEEEECC------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 382 SCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 382 ~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
+....-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-... +...... .+++. .++.+++.|+
T Consensus 369 ~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGG 445 (534)
T ss_pred ceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECC
Confidence 54332111111 11222 2244555556532 4688999887543221 1111111 12222 3556666555
Q ss_pred -CC--------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC
Q 009059 452 -DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD 517 (545)
Q Consensus 452 -dg--------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~ 517 (545)
++ .+.+||..+..- ..+..+.........+.+ +++.++.||.+ ..|.+||..+++...+....
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred ccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 21 378888876421 111111111111122222 56666666654 47899999888776554444
Q ss_pred CCeeEE
Q 009059 518 KLVSSL 523 (545)
Q Consensus 518 ~~V~~l 523 (545)
..+.++
T Consensus 523 ~~~~~~ 528 (534)
T PHA03098 523 KVIGSL 528 (534)
T ss_pred ccccce
Confidence 444443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.056 Score=59.79 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=95.4
Q ss_pred cEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCCeee----eEec------cCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 307 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~--s~dg~I~vwd~~~~~~~~----~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
+|..+...+|+...++. +.+-.|..||+++-.... +-+. ....-..++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555666676654443 344578999987532111 1111 12234668889987666667788899999
Q ss_pred EEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEE
Q 009059 375 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 375 lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s 449 (545)
+..+.... .+..+......++++|+|.|..+++|-..|++.-|...-. ....+.+ ....|.+|+|.....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 98876432 2333455677899999999999999999999998876533 2222221 2468999999888777776
Q ss_pred Ee
Q 009059 450 VS 451 (545)
Q Consensus 450 ~s 451 (545)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.013 Score=53.47 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=79.3
Q ss_pred EEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-CceE-
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-NKFH- 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-~~v~- 480 (545)
+.+.+.+|.|.-++++..+....-. -|... ..+ ..-+.-+++|+ +|.|++|...-... ........ ..|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~---~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEGA---HSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccch---HHHhhhccccccee
Confidence 4555667777777766432211111 01111 111 12334566666 99999998752211 11111111 1222
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCCCEEEEE--eCCCcEEEcC
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~~~las~--s~Dg~I~iWd 545 (545)
.+..-.++.+.++++.++.|+.|++.-++.+ ....|. .++..+..+..+++|+.+ |.|..++.|+
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 2222334557889999999999999999988 444566 567777777777888888 8888888885
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=38.57 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 297 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~ 297 (545)
...|.+++|+|..++||.+..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346999999999999999999999999998 4443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=2.2 Score=43.73 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=81.6
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc--eEEEE
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHEL 472 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~--~i~~~ 472 (545)
.+...+++..++++.....++-||-....-...-......+..+.|.+++.+++++..|.+.. ....+.... .+...
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA 321 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec
Confidence 345566654444443333333344322110111122345789999999999998887776443 333332111 22222
Q ss_pred ee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 473 SC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 473 ~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.. ....+..+.|.+++. +++++..|.+.... ..++.-.. ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 322 ~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 21 223588899998776 67777778666554 44444322 233466889999777665555 467877655
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.88 E-value=2.4 Score=43.13 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=104.1
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCC-e--eeeEecc---Cc----ccEEEEEEeCCCCcEEEEE--cC----CCcEEEEEC
Q 009059 316 SLSRLATSS-ADRTVRVWDTENPD-Y--SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI 378 (545)
Q Consensus 316 ~~~~l~t~s-~dg~I~vwd~~~~~-~--~~~~~~~---h~----~~V~~l~~~p~~~~ll~s~--s~----dg~I~lwd~ 378 (545)
+.++|+..+ ..+.|.|.|+.+.- . ..+.+.. +. .....+...|+|+.++ ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777766 67899999997422 1 1222221 11 1223344457765444 43 22 246888998
Q ss_pred CCCceeeEEeccCC----eeEEEEeCCCCEEEEEE--------------------CCCeEEEEECCCCEEEEEecCCCC-
Q 009059 379 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA--------------------IENYISILDVETQVCRLKLQGHKN- 433 (545)
Q Consensus 379 ~~~~~~~~~~~~~~----v~~l~~sp~~~~l~~~~--------------------~dg~I~i~d~~~~~~~~~~~~h~~- 433 (545)
++.+.....+.... -..+-|.|..+.+++.. ....+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88888777765433 45677888877777764 134799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCcEEEEEc-CCCCC-cceEEEEeeC-----------------CCceEEEEEcCCCC
Q 009059 434 -QVHSVCWN--TSGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP 489 (545)
Q Consensus 434 -~I~~l~~s--p~g~~l~s~s--dg~I~vwd~-~~~~~-~~~i~~~~~~-----------------~~~v~~~~~sp~~~ 489 (545)
.+..|.|. |+..+=++++ ...|..|-- ..+.- .+.+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34566664 4455544444 555555543 32210 1122222111 23478999999999
Q ss_pred EEEEEEc-CCeEEEEeCCCCe---EE-E-ecc---------------CCCCeeEEEEeCCCCEEEEEe
Q 009059 490 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 490 ~l~~~~~-dg~I~iwd~~~~~---~~-~-~~~---------------h~~~V~~l~~spd~~~las~s 536 (545)
+|++... .|.|+.||+.... ++ . ..+ -.+...-|..|.||+.|....
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9988876 5799999997643 22 1 111 112345678888998776543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=61.58 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 401 RLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
.+..+++++..|.+..+|.... .....-..-.++|++++|+.+|.+++.|- +|.|.+||+..+ ..++.+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence 3467888888999999998764 21122222457999999999999999998 999999999887 445555555544
Q ss_pred eE---EEEEcCCCCEEEEEEcCCe
Q 009059 479 FH---SCVFHPTFPSLLVIGCYET 499 (545)
Q Consensus 479 v~---~~~~sp~~~~l~~~~~dg~ 499 (545)
.. .+.+..++..++++...|.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc
Confidence 43 4445556666777777775
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.65 Score=47.28 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=81.3
Q ss_pred CCeeEEEEeCCCCEEEEEE-----------CCC-eEEEEECCC--CE--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 391 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~-----------~dg-~I~i~d~~~--~~--~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.....++|.++|..+++-. ..+ .|.+++-.+ ++ ....+.........+++.++| +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4466788888866554432 123 677776543 22 223343334456889999988 444 44334
Q ss_pred EEEE-EcCCCC----CcceE-EEEeeC----CCceEEEEEcCCCCEEEEEEcC-------------------CeEEEEeC
Q 009059 455 VRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM 505 (545)
Q Consensus 455 I~vw-d~~~~~----~~~~i-~~~~~~----~~~v~~~~~sp~~~~l~~~~~d-------------------g~I~iwd~ 505 (545)
|..| |..... ..+.+ ..+... ......+.|.|+|.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4444 443211 11222 223221 2447789999999866655521 35666666
Q ss_pred CCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 506 TENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 506 ~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
.+++...+...-.....++|+++|+++++-..
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 66554433322344678999999988776443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.8 Score=41.93 Aligned_cols=231 Identities=12% Similarity=0.137 Sum_probs=117.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeeE----eccCcccEEEEEEeCC---CCcEEEEEcCC-------
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRT----FTGHSTTVMSLDFHPS---KEDLLCSCDNN------- 370 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--~~~~----~~~h~~~V~~l~~~p~---~~~ll~s~s~d------- 370 (545)
..+.|+|.||+++|++ ...|.|++++.. +.. .+.. ..........++++|+ ...+.+.....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 569999999933 332 2222 2234567899999994 23343333311
Q ss_pred -CcEEEEECCCC--c-----ee-eEEec----cCCeeEEEEeCCCCEEEEEECCC-------------eEEEEECCCCE-
Q 009059 371 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV- 423 (545)
Q Consensus 371 -g~I~lwd~~~~--~-----~~-~~~~~----~~~v~~l~~sp~~~~l~~~~~dg-------------~I~i~d~~~~~- 423 (545)
..|.-|....+ . .+ ..... ......+.|.|++..+++.+..+ .|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 13444444333 1 11 11121 22356799999985555554322 23333322110
Q ss_pred -------------EEEEecCCCCCEEEEEEcCC-CCEEEEEe--CCcEEEEEcCCCCC----------------------
Q 009059 424 -------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK---------------------- 465 (545)
Q Consensus 424 -------------~~~~~~~h~~~I~~l~~sp~-g~~l~s~s--dg~I~vwd~~~~~~---------------------- 465 (545)
.+. -.++ .....++|+|. |.++++-. +..=.|.-+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~-A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIY-AYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEE-EE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEE-EeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 000 0111 13467899998 76665533 33223322322211
Q ss_pred ----cceEEEEeeCCCceEEEEEcCC-------CCEEEEEEcCCeEEEEeCCCCeEE----Ee-ccCCCCeeEEEEeCCC
Q 009059 466 ----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVN 529 (545)
Q Consensus 466 ----~~~i~~~~~~~~~v~~~~~sp~-------~~~l~~~~~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spd~ 529 (545)
...+..+. +...+..+.|... +.++++.-..+.|....++....+ .+ ......+..|++.|||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 01222232 2345666666543 333444444558888888755333 22 2344589999999999
Q ss_pred CEEEEEeCCCcEE
Q 009059 530 GMVASASHDKCVK 542 (545)
Q Consensus 530 ~~las~s~Dg~I~ 542 (545)
.++++.+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9998888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.1 Score=42.98 Aligned_cols=175 Identities=8% Similarity=-0.021 Sum_probs=80.7
Q ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeEEec-----cCC-eeEEEEeCCCCEEEEEECC-----------CeEEEEE
Q 009059 361 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QSG-ATQMRFQPRLGRILAAAIE-----------NYISILD 418 (545)
Q Consensus 361 ~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~-----~~~-v~~l~~sp~~~~l~~~~~d-----------g~I~i~d 418 (545)
..+++.|+.+ ..+.+||+.+.+....-.. ... ....+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 2578899887654332111 111 1112222344555666643 2578899
Q ss_pred CCCCEEEEEecCC-----CCCEEEEEEcCCCCEEEEEe-C-------------CcEEEEEcCCCCCcceEEEEe--eCCC
Q 009059 419 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS--CTGN 477 (545)
Q Consensus 419 ~~~~~~~~~~~~h-----~~~I~~l~~sp~g~~l~s~s-d-------------g~I~vwd~~~~~~~~~i~~~~--~~~~ 477 (545)
.++.+-.. +... ...-.+++. -++++++.++ + +.|.+||+.+.. ...+.... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 88764322 1111 011112222 2455555433 2 358888887642 12221110 0011
Q ss_pred ceEEEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEeccCC------CC--eeEEEEeCCCCEEEEE
Q 009059 478 KFHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHD------KL--VSSLAASTVNGMVASA 535 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~~~h~------~~--V~~l~~spd~~~las~ 535 (545)
...++ ...+++.++.|+.. ..|+.||..+.....+.... .. ..++.+.-++++++.|
T Consensus 243 ~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 11222 22345666666641 26888998877665432110 01 1233444445677777
Q ss_pred eCCC
Q 009059 536 SHDK 539 (545)
Q Consensus 536 s~Dg 539 (545)
+.++
T Consensus 322 G~~~ 325 (341)
T PLN02153 322 GKLP 325 (341)
T ss_pred CcCC
Confidence 7643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.56 Score=50.48 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=87.5
Q ss_pred CCCEEEEEeCCC------cEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCee
Q 009059 274 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 340 (545)
Q Consensus 274 dg~~latg~~dg------~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~~~ 340 (545)
++.+++.||.++ .+..||..+.+-... +.........+.+ ++++++.|+.+ ..+..||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456777776542 567788776544221 1111111222222 56777778765 35777888766542
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEECC-
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 411 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d- 411 (545)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-..+.+ ..++. ..++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccC
Confidence 11100111111122222 24566566532 3588899887654332221111 11222 2343455555532
Q ss_pred -------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCC
Q 009059 412 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 463 (545)
Q Consensus 412 -------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~ 463 (545)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388999887643221 1111111122222 566666665 3 26777777654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1 Score=45.51 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=82.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
..++|.++.||+|.+.||+--.|+.|.+++....+.. .+.+.....|....|+.+ .-+|.....| +-+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 3468999999999999999999999999997433322 233444566899999865 5566665555 777777665
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCc
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS 382 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~ 382 (545)
+..++..+.|...|.-..|.++..-++.+.+ ....+.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 5557777888888988889888655443433 34444445454443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.86 Score=48.27 Aligned_cols=180 Identities=7% Similarity=-0.015 Sum_probs=83.4
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeee-eE
Q 009059 274 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 343 (545)
Q Consensus 274 dg~~latg~~dg-----~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~-~~ 343 (545)
++.++++||.++ .+..||..+.+-.. .+.........+. -++.+.+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 46678877644322 2221111122222 366777777754 357788876554311 11
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCC---cEEEEECCCCceeeEEeccCCeeE-EEEeCCCCEEEEEECCCeEEEEEC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIENYISILDV 419 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg---~I~lwd~~~~~~~~~~~~~~~v~~-l~~sp~~~~l~~~~~dg~I~i~d~ 419 (545)
+. ....-.+++.. ++.+.+.|+.++ .+..||..+.+....-....+... ....-+ +.|++.+ |.+.+||.
T Consensus 349 l~-~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~-~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 349 LL-KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG-RRLFLVG--RNAEFYCE 422 (480)
T ss_pred CC-CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEEC-CEEEEEC--CceEEecC
Confidence 11 11111122222 245666776543 467788876654332221111111 111223 4444443 45778888
Q ss_pred CCCEEE--EEecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCC
Q 009059 420 ETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 463 (545)
Q Consensus 420 ~~~~~~--~~~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~ 463 (545)
++.+-. ..+....... +++. -+|++.+.|+ + ..+.+||..+.
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 765432 2222112222 2222 2566666665 3 24566665543
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=6.4 Score=44.33 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=98.8
Q ss_pred cCCccEEEEEEc---C----CCCEEEEEeCCCeEEEEECC------CCC--------eeeeEecc---CcccEEEEEEeC
Q 009059 303 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 358 (545)
Q Consensus 303 ~h~~~V~~l~~s---p----~~~~l~t~s~dg~I~vwd~~------~~~--------~~~~~~~~---h~~~V~~l~~~p 358 (545)
....+|..|+|. . ..++|++- ....+.|+... ... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 44556666621 100 01222221 224677888888
Q ss_pred CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEE
Q 009059 359 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 438 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l 438 (545)
....-||..+..|...||++....... .. ..-+.....|.| ++|.+. ...-..|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Cc----------ceeeccCCCccc-cCCCcc----------cCcceee
Confidence 777778888888999999982111110 01 111111122333 233221 1455688
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 439 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 439 ~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.|.++-..|++++...+.++|+.+......+ ........|..+.-++.....+..-....|...++..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888888888888999999876442222 2223456677777777732222222335666667665
|
These proteins are found in fungi. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.9 Score=40.03 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=87.7
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE-CCCCc
Q 009059 307 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 382 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s---~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd-~~~~~ 382 (545)
.+...++++++..++... ....+.++...... ...+.+ ..+....|.+++ .+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence 688999999999887765 33455565544322 222232 378888999995 4554555555566663 33332
Q ss_pred eee-EEe---ccCCeeEEEEeCCCCEEEEEEC---CCeEEEEECC---CC------EEEEEecCCCCCEEEEEEcCCCCE
Q 009059 383 CAG-VFK---CQSGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 446 (545)
Q Consensus 383 ~~~-~~~---~~~~v~~l~~sp~~~~l~~~~~---dg~I~i~d~~---~~------~~~~~~~~h~~~I~~l~~sp~g~~ 446 (545)
... ... ....|..+.++|+|.+++.... ++.|.+--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 111 1127999999999999888773 4677766443 22 111222233568899999999998
Q ss_pred EEEEe
Q 009059 447 LASVS 451 (545)
Q Consensus 447 l~s~s 451 (545)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.1 Score=45.50 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCC--Ce--EEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 264 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~-----------~dg-~I~lwd~~~--~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....|+|.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4467899999999877653 223 677775432 33 223443344456889999888 444 44444
Q ss_pred eEEEEECCCC-----C--eeeeEecc----CcccEEEEEEeCCCCcEEEEEcC------------------CCcEEEEEC
Q 009059 328 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 378 (545)
Q Consensus 328 ~I~vwd~~~~-----~--~~~~~~~~----h~~~V~~l~~~p~~~~ll~s~s~------------------dg~I~lwd~ 378 (545)
..++.|.... + ..+..+.. +......+.|.|+|..++..++. .|.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 1 11112222 13447789999998655544421 134555555
Q ss_pred CCCceeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 379 NNGSCAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
.+++.............++|++++..+++
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 54443222222233567889888665544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.2 Score=39.34 Aligned_cols=255 Identities=11% Similarity=-0.016 Sum_probs=153.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~- 344 (545)
-..++-.|||..-+++...+.|--.|-.+++....--+....-..|..-||+..-++=+.. -|.-.|-++.......+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4457888999888888888888888888988887666666667778888988766664433 45555555443221111
Q ss_pred -ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 345 -TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 345 -~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
..-........|.+.|. +-+++.. |.---.|.. ...++++. .......++..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 12235577788888864 4446642 211111111 11222332 224577899999998888888888898888877
Q ss_pred CEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 422 QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 422 ~~~~~~~--~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
+.....- ......-..+--+|.|+.-++.. .+.+..||..... -.-..+.+....-.++.....++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 6322211 11122344555567787777765 6788888865532 22233444555566777777776555555556
Q ss_pred eEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 499 TLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
.|.-||-++.....+.........+.+.
T Consensus 298 ai~rfdpeta~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 298 AIGRFDPETARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred ceeecCcccceEEEecCCCCCCCceecc
Confidence 7777777776655444333333334433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.087 Score=35.67 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.+++|+|...+||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.82 E-value=1 Score=48.34 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEe--CCCCcEEEEEcCCCcEEEEEC
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~ll~s~s~dg~I~lwd~ 378 (545)
..+.-+.-+.-++..++-+....+.|||...+...........+.|.+++|. |++..++++|- .+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEc
Confidence 3444455555455444444456899999987764433333557889999995 67777775554 777888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.8 Score=36.49 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=78.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCe-------eeeEeccCcccEEEEEEeC----CCCcEEEEEcCCCcEEEEEC
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-------~~~~~~~h~~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~ 378 (545)
.-+|......|++++.-|.|.|++...... .+..+. -...|++++--+ ++..+|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345666666888888999999998764321 123332 456788876544 3355666776 567999999
Q ss_pred CCCceeeEEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 379 NNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
....-+.....+.++.++.+-. ....++..+.+..|.-||.+..+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 9887777666678888887643 2244666666777777877766655543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.59 E-value=4.9 Score=39.25 Aligned_cols=164 Identities=9% Similarity=0.093 Sum_probs=94.7
Q ss_pred cEEEEECCCCceeeEEeccCC-------eeEEEEeCCC-----CEEEEEEC-CCeEEEEECCCCEEEEEecCCC------
Q 009059 372 EIRYWSINNGSCAGVFKCQSG-------ATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 432 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~-------v~~l~~sp~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------ 432 (545)
.|.+||+.+.+.++.+..+.. ...+.+.... .+.+.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677899999998888775533 5677777632 24444443 4689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCcEEEEEcCC-----CCC------cceEEEEeeCCCceEEEEEc
Q 009059 433 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSK------GECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 433 -------------~~I~~l~~sp---~g~~l~s~sdg~I~vwd~~~-----~~~------~~~i~~~~~~~~~v~~~~~s 485 (545)
..+..++.+| ++++|....=...++|.+.+ ... ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2356666655 66677666511223333322 111 01222222222456778899
Q ss_pred CCCCEEEEEEcCCeEEEEeCCC-----CeEE-EeccC-CCCeeEEEEeC--CCCEEEEE
Q 009059 486 PTFPSLLVIGCYETLELWNMTE-----NKTL-TLSAH-DKLVSSLAAST--VNGMVASA 535 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~-----~~~~-~~~~h-~~~V~~l~~sp--d~~~las~ 535 (545)
++|..+++--..+.|..|+..+ ...+ ..... -..+.++.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 9998777777788999999986 2222 22222 35678999998 77655554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=6.3 Score=40.42 Aligned_cols=147 Identities=10% Similarity=0.032 Sum_probs=80.5
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEE-EEECCCCc-eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-----
Q 009059 351 VMSLDFHPSKEDLLCSCDNNSEIR-YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV----- 423 (545)
Q Consensus 351 V~~l~~~p~~~~ll~s~s~dg~I~-lwd~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~----- 423 (545)
...+...+++. +++.+. .|.+. -||--... ..........+..+.+.+++..++ ++..|.+..- ...+.
T Consensus 241 f~~v~~~~dG~-~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l-~g~~G~l~~S-~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGD-YVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWL-LTRGGGLYVS-KGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCC-EEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEE-EeCCceEEEe-cCCCCccccc
Confidence 34455566653 443443 44433 23321110 112222345578888988866554 4466665443 22222
Q ss_pred EEEEecC--CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 424 CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 424 ~~~~~~~--h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
....... ....+..+.|.+++..+++|..|.+.... ..++...............+.+.|.++++ .++.+.+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEE
Confidence 1222221 22358999999999999988888666653 34433233222223345678889877765 67777788765
Q ss_pred EE
Q 009059 502 LW 503 (545)
Q Consensus 502 iw 503 (545)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 54
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.3 Score=43.87 Aligned_cols=186 Identities=7% Similarity=-0.063 Sum_probs=87.0
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC--CcEEEEECCCCceeeEE
Q 009059 316 SLSRLATSSADR-----TVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVF 387 (545)
Q Consensus 316 ~~~~l~t~s~dg-----~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g~I~lwd~~~~~~~~~~ 387 (545)
++.++++|+.++ .+..||..+..... ..+....... +++.. ++.+.+.|+.+ ..+..||..+.+....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445666776543 46678877654311 1111111111 22222 24666677653 35778887765443322
Q ss_pred eccCCeeE-EEEeCCCCEEEEEECC---CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 388 KCQSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 388 ~~~~~v~~-l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
........ ....-++..+++|+.+ ..+..||.++..-.. .+....... +++ .-++++.+.| |.+.+||..
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC--CceEEecCC
Confidence 22222211 1222344555666654 357788887654322 111111111 222 2356665555 356788886
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 511 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 511 (545)
+.. ...+..+....... .+ ..-+++..++||.+ ..+..||..+++..
T Consensus 424 ~~~-W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 424 SNT-WTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CCc-EeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 542 22222222111112 22 22355666666643 36778888777654
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=94.32 E-value=6.2 Score=39.28 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=48.3
Q ss_pred CcEEEEEcCC-----CcEEEEECCCCcee---eEEe-ccCCe--eEEEEeCCCCEEEEEEC-----CCeEEEEECCCCEE
Q 009059 361 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC 424 (545)
Q Consensus 361 ~~ll~s~s~d-----g~I~lwd~~~~~~~---~~~~-~~~~v--~~l~~sp~~~~l~~~~~-----dg~I~i~d~~~~~~ 424 (545)
+.+++.|+.+ ..+..||+.+.+.. ..+. .+... .+++. -++..++.|+. ...+..||+.+.+-
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666644 35667777765531 1111 11111 12222 23355555553 24688899886542
Q ss_pred E--EEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCC
Q 009059 425 R--LKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 463 (545)
Q Consensus 425 ~--~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~ 463 (545)
. ..+... ......+..-++++.+.|+ ++ .+.+||+.+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 222211 1111222223566666665 43 3568888764
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.4 Score=45.68 Aligned_cols=78 Identities=28% Similarity=0.379 Sum_probs=54.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEc---------CCCeEE---EEe--------ccCCccEEEEEEcCC---CCEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCT---------ESFTVK---STL--------EEHTQWITDVRFSPS---LSRLA 321 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~---------~~~~~~---~~l--------~~h~~~V~~l~~sp~---~~~l~ 321 (545)
.|..|.++|+|++||..|..|.+.+.=. +.++.. +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5888999999999999988665444321 111111 111 134567999999995 57899
Q ss_pred EEeCCCeEEEEECCCCCeeee
Q 009059 322 TSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.-..|+++|+||+.....+..
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEecCCEEEEEecCCCCCCeE
Confidence 999999999999986554433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.1 Score=36.05 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=72.6
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCE--------EEEEecCCCCCEEEEEEcC-----CCCEEEEEeCCcEEEEEcCC
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 462 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~--------~~~~~~~h~~~I~~l~~sp-----~g~~l~s~sdg~I~vwd~~~ 462 (545)
-.|......|++++..|.|.|++..... .+..+. -...|++|+-.+ ....|+.|+...+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3555566678899999999999876432 233333 456788886543 35789999999999999987
Q ss_pred CCCcceEEEEeeCCCceEEEEEc---CCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 463 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~s---p~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
... .. ++.-...++++.+- ....-++..+.+..|.-||....+..
T Consensus 83 N~d-~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 532 11 12223556666553 22234677777778888888776655
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=5.9 Score=38.02 Aligned_cols=251 Identities=12% Similarity=0.038 Sum_probs=132.8
Q ss_pred eeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEcCCCC
Q 009059 242 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
.++.|..+.....++..+... +--.++..+ |++..++..|.-+.+.|+.+- .+...+......-..++.+ |+
T Consensus 108 L~IvDIS~P~sP~~~~~lnt~-gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn 182 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNTD-GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN 182 (370)
T ss_pred eEEEeccCCCCcceeccccCC-ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC
Confidence 455555555544444444431 223444544 778888876777778887642 3334444444445667775 66
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcc-cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~ 395 (545)
+-..+..|+-+.|-|+.++..+...-.-..+ .+.++..+++. .++ +-. +.-+.+-|..+.+....+.. ...+.+
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~-vvy-~egvlivd~s~~ssp~~~gsyet~~p~~ 259 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYL-VVY-DEGVLIVDVSGPSSPTVFGSYETSNPVS 259 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEE-EEc-ccceEEEecCCCCCceEeeccccCCccc
Confidence 7778889999999999887654432222223 67777777653 233 333 34477777776553333321 122222
Q ss_pred E-EEeCCCCEEEEEECCCeEEEEECCCCEEE---EEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 396 M-RFQPRLGRILAAAIENYISILDVETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l-~~sp~~~~l~~~~~dg~I~i~d~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
+ .+.-.+++..++..+..+-+.|..+.... ..+......-..+.. .+.++..+..+...+-+....+. ...
T Consensus 260 ~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~---m~~ 334 (370)
T COG5276 260 ISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSM---MDK 334 (370)
T ss_pred ccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChhh---ccc
Confidence 2 33334566667766766777776543211 111111112222322 24444444433445555543311 111
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
..+....+.++..+-+.+.+.....++.+.||+.
T Consensus 335 ~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 335 RPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1122233445555555557778888888888875
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.01 E-value=5.7 Score=37.73 Aligned_cols=212 Identities=10% Similarity=0.051 Sum_probs=130.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.-..|+-.+||..-+++...+.|--.|-.+++. ...-.+....-..|..-|++...++=. ..-|.-.|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence 345677888998888888888888888888775 333334455667788888876555222 22466666665554321
Q ss_pred -Ee---ccCCeeEEEEeCCCCEEEEEEC---------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q 009059 387 -FK---CQSGATQMRFQPRLGRILAAAI---------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 452 (545)
Q Consensus 387 -~~---~~~~v~~l~~sp~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d 452 (545)
+. .........|.+.|...+++.. .+.|++|+.. .....+.||..|+|...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 11 2345778889999877777653 1234444433 234557788999998877766 7
Q ss_pred CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCC
Q 009059 453 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 453 g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~ 530 (545)
+.|...|..++.. +.+..-.........+--+|.++.-++....+.++.||-...... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7787778766532 222222222344555666777876677666778888887665544 3444444445555544444
Q ss_pred EE
Q 009059 531 MV 532 (545)
Q Consensus 531 ~l 532 (545)
..
T Consensus 289 VW 290 (353)
T COG4257 289 VW 290 (353)
T ss_pred EE
Confidence 33
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.90 E-value=3.1 Score=44.88 Aligned_cols=122 Identities=11% Similarity=0.114 Sum_probs=78.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEc--CCCCEEEEEeCCCeEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRV 331 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~s--p~~~~l~t~s~dg~I~v 331 (545)
....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334444444555666666656655555555689999999877554332 457789999995 58889999999999999
Q ss_pred EECC-----CCC---eeeeE--eccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 332 WDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 332 wd~~-----~~~---~~~~~--~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
|.-. +.. ..++. +..|+ .+|.+..|.++|. +++.+ +..+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 8532 111 11221 23344 5799999999874 43233 4578888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.77 E-value=4.2 Score=37.30 Aligned_cols=139 Identities=22% Similarity=0.283 Sum_probs=80.4
Q ss_pred CEEEEEeCCCeEEEEECCCCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCC--C---cEEEE---ECC--CCceee-
Q 009059 318 SRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG- 385 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~d--g---~I~lw---d~~--~~~~~~- 385 (545)
..|+.+...+.|.+|++......+ ..|. .-+.|..+.++..|++++..=... . .+|+| +.. ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999998444333 3444 458899999999988777432211 2 45664 222 111111
Q ss_pred ----------------------EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE------EEEecC----C-C
Q 009059 386 ----------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQG----H-K 432 (545)
Q Consensus 386 ----------------------~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~------~~~~~~----h-~ 432 (545)
.+.....+.+++..|-.+.|++|+ ++.+.+|.+..... +..+.. | .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 112234567888888777777665 46777887654332 111111 1 1
Q ss_pred C-CEEEEEEcCCCCEEEEEeCCcEEEEEc
Q 009059 433 N-QVHSVCWNTSGEYLASVSDELVRVWSI 460 (545)
Q Consensus 433 ~-~I~~l~~sp~g~~l~s~sdg~I~vwd~ 460 (545)
+ .+..+++ -+.|+|..++..++++.+
T Consensus 187 ~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred CceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 1 2344444 367888888888888765
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.72 E-value=6.5 Score=41.14 Aligned_cols=267 Identities=13% Similarity=0.021 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.+|..+.+...|. |..|+.|| +..||..+++.+..-.... .+|..+.-.-.+ .|..|+.+| |.+.+.+.....-.
T Consensus 165 ~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 165 TPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 4577888888874 45566555 6778877777765543332 556666555444 577777776 67766654222111
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEecc---CCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQ---SGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~~~---~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
...-..+.|..+.-..+|. +..|+.+|-.+ +........ ...+.+ +.+..+....+ +.+.+++.++.+++-+
T Consensus 241 ~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~ 316 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLT 316 (671)
T ss_pred CCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEec
Confidence 1111233455444444432 33455555333 233322221 111111 23445555555 5577777777766654
Q ss_pred CCCCEEEEEecCCCC-CEEEEEEcC---CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 419 VETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~-~I~~l~~sp---~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
.+- .....+....+ .+-.++..| +......-+-+.+.+-+-.++.....++. .....|+.+++..++. +..+
T Consensus 317 a~w-~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q--~Rg~nit~~~~d~~g~-lWlg 392 (671)
T COG3292 317 ADW-KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ--LRGMNITTTLEDSRGR-LWLG 392 (671)
T ss_pred chh-hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee--ccccccchhhhccCCc-EEEE
Confidence 431 11111111111 111111112 01111111122233333333321112222 2234566667776554 7777
Q ss_pred EcCCeEEEEeCCC-CeEEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 495 GCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 495 ~~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+.+-.|+.++ +-.+... ...+.|.+|-=.|+++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776677777766 3333221 2346788888788888 777888887663
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.62 E-value=12 Score=40.47 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee--eEeccCcccEEEEEEeCCCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKE 361 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~ 361 (545)
--.|+||++. |.++..+.-....+..+.|+.+. .|++...+|+++||++-...... .-+......|..+.|..+|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 3468888864 55554443333378889999765 56666799999999986432211 0011122334444444444
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEec-cC---CeeEEEEeCCCC---EEEEEECCCeEEEEECCCC-EEEEEecCCCC
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKN 433 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~---~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~ 433 (545)
++ .-..+|.+.+-+-......+..+. +. ...|-...+++. .++-....-...++...+. .....+.....
T Consensus 140 -Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22 222244444432211111222111 00 112222222211 1111110001112222211 11122222346
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.+..+..||+.++|+.-. .|.|.+-+....
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 788899999999999888 888888887654
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=93.60 E-value=11 Score=39.84 Aligned_cols=191 Identities=6% Similarity=-0.021 Sum_probs=90.0
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCCeeeeEecc-Ccc--c-EEEEEEeCCCCcEEEEEcCC-----CcEEEEECC
Q 009059 316 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--T-VMSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 379 (545)
Q Consensus 316 ~~~~l~t~s~d-------g~I~vwd~~~~~~~~~~~~~-h~~--~-V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~ 379 (545)
++.+++.|+.+ ..+.+||+.+.........+ ... . -.+++.. +..+++.|+.+ ..+..||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24677888765542211111 000 0 1112222 34566666654 358889988
Q ss_pred CCceeeEEec---cCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEec-----CCCCCEEEEEEcCCC
Q 009059 380 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 444 (545)
Q Consensus 380 ~~~~~~~~~~---~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~sp~g 444 (545)
+.+....... +.+ -.++.. -++..++.++.+ ..+..||+.+.+-...-. ..... ..++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 112222 233555556543 357788887764322110 01111 12222 256
Q ss_pred CEEEEEe-C----CcEEEEEcCCCCCcceEEEEe--eCCCceEEEEEcCCCCEEEEEEcC--------------CeEEEE
Q 009059 445 EYLASVS-D----ELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELW 503 (545)
Q Consensus 445 ~~l~s~s-d----g~I~vwd~~~~~~~~~i~~~~--~~~~~v~~~~~sp~~~~l~~~~~d--------------g~I~iw 503 (545)
++++.++ + ..+.+||+.+.. ...+.... .......+++ .-+++.++.|+.. ..+.+|
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEE
Confidence 6666655 4 368899987652 12221110 0011112222 2345666666642 258899
Q ss_pred eCCCCeEEEe
Q 009059 504 NMTENKTLTL 513 (545)
Q Consensus 504 d~~~~~~~~~ 513 (545)
|+.+.+...+
T Consensus 408 D~~t~~W~~~ 417 (470)
T PLN02193 408 DTETLQWERL 417 (470)
T ss_pred EcCcCEEEEc
Confidence 9988876643
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.2 Score=37.73 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe
Q 009059 316 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 316 ~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
++.++.+.+. ...|++||+.+++.....-.. ...+..=-...-++.+....-.+|.-..+|.++.+++..+..++.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556666554 347999999987763322221 1222222222223455555566888889999999999988877776
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE----ecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
..++.. +..++.+.....+..-|.++-....+ +.+ .-..++.+.|- +|.+.|-.- +..|...+..+++...
T Consensus 134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 666544 34577766667788777765433222 222 11233344442 454444443 4455555555542111
Q ss_pred e---------EEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 468 C---------IHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 468 ~---------i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
. +..-..+.+-.+.+++.|+...++..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 1 111112344567888988885444443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.051 Score=58.68 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=69.3
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcC--CCeEE-----EEeccCCccEEEEEEcC---CCCEEEEEeCC
Q 009059 258 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 326 (545)
Q Consensus 258 ~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~--~~~~~-----~~l~~h~~~V~~l~~sp---~~~~l~t~s~d 326 (545)
.+++..+.|-.++|-. +...++ -.-|.+.||+++ .|+.. .........+.-|.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4566777888888854 222222 223678899875 23322 22222334445566655 56778888888
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEE-----------eCCCCcEEEEEcCCCcEEEEEC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~-----------~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
++|++..+.... ...+.+|...+..++| +|||. .++....||.+++|.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeee
Confidence 999998876543 2445567776666654 56654 3445555777666654
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.41 E-value=10 Score=38.60 Aligned_cols=150 Identities=9% Similarity=0.058 Sum_probs=87.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccC--CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-cc
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT 350 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~ 350 (545)
+++ +..+..+|.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.+..+|..++.. +..+.... ..
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~ 144 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY 144 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence 454 444467888888888887766433221 12233333333565 77888899889999877765 44433333 11
Q ss_pred EEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEE--EeCCCCEEEEEEC--CCeEEEEECCCCEEE
Q 009059 351 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMR--FQPRLGRILAAAI--ENYISILDVETQVCR 425 (545)
Q Consensus 351 V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~--~sp~~~~l~~~~~--dg~I~i~d~~~~~~~ 425 (545)
+..-....+ ..++.++.++.+...|..+++.......... -.... .....+.++.+.. ++.+.-+|.+++...
T Consensus 145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 222222223 2343454689999999998988777654332 00000 1123355666665 667888899888776
Q ss_pred EEe
Q 009059 426 LKL 428 (545)
Q Consensus 426 ~~~ 428 (545)
...
T Consensus 223 w~~ 225 (370)
T COG1520 223 WSQ 225 (370)
T ss_pred eee
Confidence 653
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.0088 Score=60.18 Aligned_cols=142 Identities=15% Similarity=0.278 Sum_probs=100.1
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
.....|.+.+..+++++.+..|..||-.... +.... ..+....++|+.++..++... .+.+.+||+.+... ..+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL- 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL- 112 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH-
Confidence 4456788888889999999999999865432 22222 345567788988887766655 77999999976422 111
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-CCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+.. ....-.-+.|++.+..++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 113 E~g-g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 113 ESG-GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred hcc-CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111 11111226899999999999999999999998887775555 99999999999876 4555555543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.9 Score=37.93 Aligned_cols=169 Identities=8% Similarity=-0.019 Sum_probs=90.4
Q ss_pred cEEEEEcC--CCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEE
Q 009059 362 DLLCSCDN--NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 362 ~ll~s~s~--dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
.++.+.+. ...|++||+.+++.+....... .+..=-...-+..+..-+ .+|.-.+||.++-+++..+. ..+.=..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWg 135 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWG 135 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCccee
Confidence 55555543 4479999999998887665541 222111222234444444 58889999999887766554 3344455
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce---EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 513 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v---~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~ 513 (545)
++. |++-|+.+. ..+++.-|..+......+... ..+.+| +.+.|- +|...+-.-....|...|..+++++..
T Consensus 136 Lt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~w 211 (262)
T COG3823 136 LTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAW 211 (262)
T ss_pred eec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEE
Confidence 653 444455444 446777676554322222111 111122 222222 333333333344455556666655421
Q ss_pred -------------ccCCCCeeEEEEeCCC-CEEEEE
Q 009059 514 -------------SAHDKLVSSLAASTVN-GMVASA 535 (545)
Q Consensus 514 -------------~~h~~~V~~l~~spd~-~~las~ 535 (545)
..|....+.|++.|++ ++++||
T Consensus 212 idlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 212 IDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2355678899999988 455665
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.3 Score=45.31 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC-------cEEEEEcCCCcEEEEECCC-CceeeE
Q 009059 316 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-------DLLCSCDNNSEIRYWSINN-GSCAGV 386 (545)
Q Consensus 316 ~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-------~ll~s~s~dg~I~lwd~~~-~~~~~~ 386 (545)
+..+|+ .+.....+.-.|++.++. +..+.-|... -+.|.|... .-+ .|-.+..|.-.|.+- +..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkv-veeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKV-VEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccccee-eeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444444 344455666677777764 6666666544 456666431 233 343455566666653 333332
Q ss_pred EeccCCeeEEEEe----CCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 387 FKCQSGATQMRFQ----PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 387 ~~~~~~v~~l~~s----p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
......++.-.|+ -..+++++++..|.|++||--.......+.+-...|..|....+|++|++.+...+.+-|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 2222222222222 34589999999999999997666555667777889999999999999999998889998875
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.5 Score=44.94 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=88.8
Q ss_pred CCCEEEE-EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC--------CEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 401 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG--------EYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 401 ~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g--------~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
+...|+. +.....++-.|++.|+.+..+..|..- -+.|.|+. ..|+.-++..|.-.|.+-......+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3344433 444678999999999999998877665 46677743 456666677777677665432222222
Q ss_pred Eee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 472 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 472 ~~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.+. ..+...+..- ....++++++..|.|++||.-..+-. .+.+....|..+..+.+|++|++.+..
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 221 1222333333 34457999999999999997554444 566778889999999999987776654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.062 Score=58.06 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCe-EEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CC----eeeeEeccCcccEEEEE
Q 009059 284 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 355 (545)
Q Consensus 284 dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~--~~----~~~~~~~~h~~~V~~l~ 355 (545)
.+.|++-+.++.- ....+++..+.|-.+.|-. +...++ -.-|...|||+.- ++ ..+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4567777665422 1233467778888888854 222222 2346788998752 22 12223333334445555
Q ss_pred EeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 356 FHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 356 ~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
|.|- .+..++.+..+++|++.++.+...-....|...+..++|...| ++...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g-~~~l~------------------------- 241 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEG-VLKLA------------------------- 241 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhc-hhhhe-------------------------
Confidence 5541 1355667778889998877654331111133334444443331 11100
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCC--CCCcceEEEEeeCCCceE-EEEEcCCC---------CEEEEEEc-CCe
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHELSCTGNKFH-SCVFHPTF---------PSLLVIGC-YET 499 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~--~~~~~~i~~~~~~~~~v~-~~~~sp~~---------~~l~~~~~-dg~ 499 (545)
..+|||..|+... ||.+++|-+.- .....|++..+.|...-. |..++... .++++++. +..
T Consensus 242 -----~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre 316 (1283)
T KOG1916|consen 242 -----SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNRE 316 (1283)
T ss_pred -----eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcc
Confidence 0566666666665 66655554321 112245555555553222 22222211 12333333 337
Q ss_pred EEEEeCCCCeEE
Q 009059 500 LELWNMTENKTL 511 (545)
Q Consensus 500 I~iwd~~~~~~~ 511 (545)
+++|.....+++
T Consensus 317 ~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 317 EKFWAEAPWQCL 328 (1283)
T ss_pred eeEeeccchhhh
Confidence 889987776665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.5 Score=44.25 Aligned_cols=103 Identities=11% Similarity=0.138 Sum_probs=70.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC--C
Q 009059 431 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--T 506 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~--~ 506 (545)
..++|.+|.|++|.+.||+-- |..|.+++....+. ....++.+.....|...+|+.+. -++.....| +.+|-. .
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh
Confidence 467999999999999999988 89999999743221 12223333445568889998774 466666655 445543 3
Q ss_pred CCeEEEeccCCCCeeEEEEeCCCCEEEEE
Q 009059 507 ENKTLTLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.........|...|+-..|.++.+.+.-+
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeee
Confidence 33333555788888888899888754443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.41 Score=31.47 Aligned_cols=31 Identities=39% Similarity=0.623 Sum_probs=26.2
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCcEEEEEcCC
Q 009059 264 SKVESCHFSPD-G--KLLATGGHDKKAVLWCTES 294 (545)
Q Consensus 264 ~~V~~l~~spd-g--~~latg~~dg~I~lwd~~~ 294 (545)
+.|.+|+|||+ + ++||.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5899888889999999984
|
It contains a characteristic DLL sequence motif. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.15 E-value=18 Score=40.78 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCeEEEEECC-CCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 411 ENYISILDVE-TQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 411 dg~I~i~d~~-~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+|.++.|++- .++.+.-+. .-.+.|.++ .|...++.+|-...+++||+...+... ..+++.....|..+.+ .
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai--~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt--~ 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAI--CPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQT--Y 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEE--eccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEee--c
Confidence 3446666653 233222111 123344444 477778888888899999997653211 1112222344555554 4
Q ss_pred CCEEEEEEcCCeEE--EEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 488 FPSLLVIGCYETLE--LWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 488 ~~~l~~~~~dg~I~--iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
+..+++|.....+. .|+-.+++.+.+.. -...|+++.+- |...+|.|..=|.+.+
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 55688888777554 56666677665543 33457666654 4456777766666554
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.08 E-value=12 Score=38.53 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCee---eeEeccCcccEEEEEEeC---C-CCcEEEEEcCCCcEEEEECCC--Cc-----
Q 009059 317 LSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHP---S-KEDLLCSCDNNSEIRYWSINN--GS----- 382 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~---~~~~~~h~~~V~~l~~~p---~-~~~ll~s~s~dg~I~lwd~~~--~~----- 382 (545)
...|++|+..|.++||+....... +..-..-..+|..+..-. . ....||. =.-..+.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998654421 111122456777776532 2 2233433 2355677777631 11
Q ss_pred -----eeeEEeccCCeeEEEEeCC-----CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 383 -----CAGVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 383 -----~~~~~~~~~~v~~l~~sp~-----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
.+...........+++-|- ...+.+-+.||.+.+|+-+.-.....+.. ---.-.++|.+.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1112222334455555442 24566778899999999887655554443 22234466777777777777
Q ss_pred CCcEEEEEc
Q 009059 452 DELVRVWSI 460 (545)
Q Consensus 452 dg~I~vwd~ 460 (545)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 678888875
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.024 Score=57.12 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-E
Q 009059 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V 386 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~ 386 (545)
.....|.+.+.-++.++.+..+..||-.... ..-...++....++|..+++.+++.+...+.+.+||+.+..... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3445677777778888888889999865322 11122356677889998888888888889999999997543211 1
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
+.....-.-+.|++....++.+...|.+.|++..+.+.+.....|...+++++|.+.+..+..++|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111111222678888888888888999999999888777666669999999999998876665555544433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.95 E-value=4.8 Score=43.93 Aligned_cols=110 Identities=8% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEEEEeC-CCCcEEEEEcCCCcEEEEECCC-------C-------------ceeeEEeccCCeeEEEEe--CCCCEEEE
Q 009059 351 VMSLDFHP-SKEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILA 407 (545)
Q Consensus 351 V~~l~~~p-~~~~ll~s~s~dg~I~lwd~~~-------~-------------~~~~~~~~~~~v~~l~~s--p~~~~l~~ 407 (545)
|+.|.... .+..+|+.|.+||.|.+|.+++ . ++...+.....+..++++ .....|++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444332 2456777899999999996531 0 122344455668888888 66566666
Q ss_pred EECCCeEEEEECCC--CEEEE-EecCCCCCEEEEEEcCCC-----C-EEEEEe-CCcEEEEEc
Q 009059 408 AAIENYISILDVET--QVCRL-KLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 460 (545)
Q Consensus 408 ~~~dg~I~i~d~~~--~~~~~-~~~~h~~~I~~l~~sp~g-----~-~l~s~s-dg~I~vwd~ 460 (545)
++....|.||-... .+... .-..|...|.+|+|-++. . +|++++ .|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66667776664433 11111 111256688999997643 2 677777 998888877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.85 Score=42.60 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=55.7
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe-------c-------CCCCCEEEEEEcCCCCEEEEEeC
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSD 452 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~-------~h~~~I~~l~~sp~g~~l~s~sd 452 (545)
+.....+.. +..++.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++
T Consensus 9 i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 9 IVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 333344433 4456788999999999999999998765432 1 24567889999999998888888
Q ss_pred CcEEEEEcCC
Q 009059 453 ELVRVWSIGS 462 (545)
Q Consensus 453 g~I~vwd~~~ 462 (545)
|..+.|+..-
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 8899998654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.79 E-value=3.9 Score=44.08 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=84.8
Q ss_pred CCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE-Ee--cCCCCCEEEEEEcCCCC
Q 009059 370 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KL--QGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~-~~--~~h~~~I~~l~~sp~g~ 445 (545)
--.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+++|++-...... .. ......|..+.+..+|-
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 3457788775 44443332 2347888999987 789999999999999986432221 11 12233455555555665
Q ss_pred EEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEE-EcCCCC--EEEEEEcCCeEEEEeCCCC--eEEEeccCCCCe
Q 009059 446 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMTEN--KTLTLSAHDKLV 520 (545)
Q Consensus 446 ~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~-~sp~~~--~l~~~~~dg~I~iwd~~~~--~~~~~~~h~~~V 520 (545)
.+.+.++..+.+.++..... .....+....-...+-. +.|... .++-....-...++-..+. ....+......+
T Consensus 141 avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 55555454555555443210 00111111111111111 112111 1111110001112222222 111222223567
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEE
Q 009059 521 SSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 521 ~~l~~spd~~~las~s~Dg~I~i 543 (545)
..+..||+.++|+--..+|.|.+
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEE
Confidence 78888999998888888887765
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.081 Score=59.70 Aligned_cols=8 Identities=38% Similarity=0.410 Sum_probs=3.6
Q ss_pred cCCCcccc
Q 009059 26 NSRNMGLA 33 (545)
Q Consensus 26 ~~~~~~~~ 33 (545)
++.+|--+
T Consensus 2039 ~~q~m~~~ 2046 (2220)
T KOG3598|consen 2039 MNQNMGGM 2046 (2220)
T ss_pred cccchhhh
Confidence 44554433
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.62 E-value=20 Score=39.86 Aligned_cols=93 Identities=14% Similarity=0.173 Sum_probs=50.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
-.|..|.++++|++|+..+..| |.|-.+...-.....+.+-...|.|-.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 4588899999999999988766 4444443211001122222233333332211 1122 11
Q ss_pred EEeccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCC
Q 009059 386 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET 421 (545)
Q Consensus 386 ~~~~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~ 421 (545)
.....|..+.|+|. +..|++-+.|+.+++||+..
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 01134566777775 46777777788888887754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.58 E-value=8.1 Score=35.50 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCC--CEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~--~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
...++.... +.|+++.....|.+|++.. ...+..|.. -+.|..+.++..|+||++-.
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 334444332 5666668888999999983 355666663 48899999999999999976
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.55 E-value=1.4 Score=49.33 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=86.6
Q ss_pred CeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEE-----EEecC------CCCCEEEEEEcCCCC--EEEEEeCCcEE
Q 009059 392 GATQMRFQPRLGRILAAAI--ENYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGE--YLASVSDELVR 456 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~-----~~~~~------h~~~I~~l~~sp~g~--~l~s~sdg~I~ 456 (545)
.+..+...+++...++... +-.|+.||+++-..- .-+.. ......++.|.|.-. .++.-.|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3455555666555554444 337889998753211 11111 223556788888643 33334488888
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec----cCCCCeeEEEEeCCCCEE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMV 532 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spd~~~l 532 (545)
+..+.-.. ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+. .....|.+|+|-....+|
T Consensus 182 V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88765321 11112 124567899999999999999999999988865433222221 124789999998777776
Q ss_pred EEE
Q 009059 533 ASA 535 (545)
Q Consensus 533 as~ 535 (545)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=91.96 E-value=20 Score=38.30 Aligned_cols=226 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccC-cccEEEEEEeCCCCcEEEEEcC--CCcEEEEECCCCceeeEEec
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~--dg~I~lwd~~~~~~~~~~~~ 389 (545)
..++..++.+..+|.+....+..... ......+. .....++.+..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677889999999998887765331 11222222 4556677777765345556654 55666666555666777777
Q ss_pred cCCeeEEEEeCC----CC------EEEEEEC---CCeEEEEECCCCEE--EEEecCC--CCCEEEEEEcC-CCCEEEEEe
Q 009059 390 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS 451 (545)
Q Consensus 390 ~~~v~~l~~sp~----~~------~l~~~~~---dg~I~i~d~~~~~~--~~~~~~h--~~~I~~l~~sp-~g~~l~s~s 451 (545)
-+++..+++... .. .+++++. +|.++++.-.-+-. ....... -..++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 788999888632 22 5666653 67888874322211 1111111 22333443322 256787777
Q ss_pred CCcEEEEEcCCCCCcceEEEE-----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee-ccCCCCeeEEE
Q 009059 452 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLA 524 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~-----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-~~h~~~V~~l~ 524 (545)
...-+++.+........+... ......+.+..+. +..++=.. ...|++.+....+.. .+ ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 666667776421111222221 1112223333333 33333333 335788887776666 22 23444555555
Q ss_pred EeCCCCEEEEEeCCCcEEEc
Q 009059 525 ASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 525 ~spd~~~las~s~Dg~I~iW 544 (545)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556665543
|
... |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.1 Score=41.75 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=47.4
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEE--------ec-------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--------~~-------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+...+.+|++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 45678889999999999999999988761 11 3556788899998888777665 57777775
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.45 E-value=3.1 Score=39.36 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=74.3
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEE---EeeCCCceEEEEEcC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHE---LSCTGNKFHSCVFHP 486 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~---~~~~~~~v~~~~~sp 486 (545)
-.+||+.+++.............+-.+.+||++|.+|+ +| .+++++...........+ .-.......+...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 35788887755432222333334446779999999998 44 688888654111011111 112334555667778
Q ss_pred CCCEEEEEEcCC-eEEEEeCCC--CeEEEe--ccC------CCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 487 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SAH------DKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 487 ~~~~l~~~~~dg-~I~iwd~~~--~~~~~~--~~h------~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
||+.|++|+... +..+|.-.. .....+ ... ...--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566666532 112211 110 11112456679999999988766553
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.44 E-value=5.9 Score=45.66 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=106.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
....++|+|.-.++|.+..+|.|++|-...-+.......-. ..+..+.|-...........+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 45668999999999999999999999865433332222111 1222222222222333444455666666543221
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEE-EEeCCCCEEEEEECCCeEEEEECC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQM-RFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l-~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
..+...+++....+- ...+.+ ..+.+++||..-.......- ........ ...+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 112233343333222 111344 77888888875322111110 00000000 000000000000000001111111
Q ss_pred CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 421 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 421 ~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
... ..+..+..++.+..+......+.....+.+.+|+..... ....+. +....+..++..++++-.|+.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYL-----PNGQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcc-----cccccCccCCceEEEEEecCCE
Confidence 000 122224455666666555666665556677777654331 111111 1111227788889999999999
Q ss_pred EEEeCCCCeE
Q 009059 501 ELWNMTENKT 510 (545)
Q Consensus 501 ~iwd~~~~~~ 510 (545)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=20 Score=36.52 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEEeCCCCeEEEeccCC-CCeeEEEEeCCCCEEEEEeCC
Q 009059 500 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 500 I~iwd~~~~~~~~~~~h~-~~V~~l~~spd~~~las~s~D 538 (545)
+.+||.++++...+..-. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888876654222111 111122334467788888753
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.86 E-value=17 Score=35.38 Aligned_cols=195 Identities=10% Similarity=0.097 Sum_probs=108.8
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC------CC-ceeeEEec------cCCeeEEEEeCCCC------------
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRLG------------ 403 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~------~~-~~~~~~~~------~~~v~~l~~sp~~~------------ 403 (545)
..-+.|+++|.+. +.++....+...+||.. .. ..+-.+.. ....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3467899999864 44466667889999986 11 12222221 13456666664322
Q ss_pred EEEEEECCCeEEEEECCCCEE-----EEEecC-CCCCE-EEEEEcC--CCCEEEEEe--CCcEEEEEcCCCCCcceEEEE
Q 009059 404 RILAAAIENYISILDVETQVC-----RLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~-----~~~~~~-h~~~I-~~l~~sp--~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++.+++||+|.-|...-... ...+.. ....| ..+++.. .+.+|..+. .++|.|||-.-... ..-..+
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~~~g~F 180 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-PLPGSF 180 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-cCCCCc
Confidence 367888999999998532211 122221 12333 4455543 367888777 78999998542210 000000
Q ss_pred e-----eC---------CCc--eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeC------C
Q 009059 473 S-----CT---------GNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAAST------V 528 (545)
Q Consensus 473 ~-----~~---------~~~--v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~sp------d 528 (545)
. .. ... |+-..-.++...=+.+..-|.|-+||+...-+.++ .+.-...+.|+..| .
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0 00 000 11111122333233444556899999977765544 24456677888766 3
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
+.+|+---.||+|..||
T Consensus 261 g~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 261 GALLVGNFGDGTINAYD 277 (336)
T ss_pred CCeEEeecCCceeEEec
Confidence 56676655699999886
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.50 E-value=20 Score=35.75 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCeeEEEEeCCCCEEEEEECCCe------EEEEECCCC----EEE-----EEecCCCC--------CEEEEEEcCCCCEE
Q 009059 391 SGATQMRFQPRLGRILAAAIENY------ISILDVETQ----VCR-----LKLQGHKN--------QVHSVCWNTSGEYL 447 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~------I~i~d~~~~----~~~-----~~~~~h~~--------~I~~l~~sp~g~~l 447 (545)
++...+.+.++++.+++.+.+|. ++.+++... ..+ ..+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56788888877788888888887 776665531 111 11221111 33477887788888
Q ss_pred EEEe-C------CcEEEEEcCCCCCcceEE---EE---------eeCCCceEEEEEcCCCCEEEEEEcCC-------e--
Q 009059 448 ASVS-D------ELVRVWSIGSGSKGECIH---EL---------SCTGNKFHSCVFHPTFPSLLVIGCYE-------T-- 499 (545)
Q Consensus 448 ~s~s-d------g~I~vwd~~~~~~~~~i~---~~---------~~~~~~v~~~~~sp~~~~l~~~~~dg-------~-- 499 (545)
++.. + ..|+.++.. +.....+. .+ ......+..++++|+++.|+++.... .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 7766 6 678777765 33222221 11 12345688999999999777765422 1
Q ss_pred -----EEE--EeCCC-C---eEE--Eecc-----CCCCeeEEEEeCCCCEEEE
Q 009059 500 -----LEL--WNMTE-N---KTL--TLSA-----HDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 500 -----I~i--wd~~~-~---~~~--~~~~-----h~~~V~~l~~spd~~~las 534 (545)
+++ ||..+ + ... .+.. ....|..+.+-+++++|+-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 55554 2 111 2222 4577899999999987764
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=90.47 E-value=13 Score=40.31 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE--Eec-cCCccEEEEEEcC------CCCEEEEEeC-C---CeE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE-EHTQWITDVRFSP------SLSRLATSSA-D---RTV 329 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~--~l~-~h~~~V~~l~~sp------~~~~l~t~s~-d---g~I 329 (545)
.+.|..+.|..+++.+++.-.+|.|.+||...+.... .+. .+...|.-=+|-+ ...++++.+. + -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993322221 221 1222111112322 2345554443 2 256
Q ss_pred EEEECCCCCeeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCe-----eEEEEeCC
Q 009059 330 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPR 401 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v-----~~l~~sp~ 401 (545)
+++.+......+..+. .+........|.-..+.+..- .+++|.+|++...+...++....-+ ..+.+.|-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722221122221 112222222232222334333 5789999999888877777654222 12233332
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
...-+.-+.++.|++.|+.-...+..+.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 2223344567899999987655444433
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.46 E-value=22 Score=36.13 Aligned_cols=186 Identities=5% Similarity=-0.039 Sum_probs=98.0
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC--CeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~--~v~~ 395 (545)
.++.+..+|.|.-.|.+++.......... ...+..-.+..+|. ++.++.++.++.+|..+++.+..+.... .+..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 45555788888888888776422111111 12233333333553 4477778899999999999998888766 1112
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC---CEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN---QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
..+-.+ ..++..+.++.+...|..+++.+........ .+..--...++..++... ++.+.-+|..++.. ..
T Consensus 148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~---~w 223 (370)
T COG1520 148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL---KW 223 (370)
T ss_pred CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE---ee
Confidence 222222 4555555789999999999888766443221 111111112333333322 33455556655532 21
Q ss_pred EEe----eCCC------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 471 ELS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 471 ~~~----~~~~------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+ .... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 110 0000 01100111122 2466677777888888888877
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.3 Score=28.68 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEE
Q 009059 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 358 p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~ 398 (545)
|+++.++++...++.|.++|..+++.+..+........+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 56777887887889999999999988888776555555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=89.57 E-value=13 Score=38.48 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=23.7
Q ss_pred CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
+..|..++..+..++|++.. ++.|.+|++..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34599999999889999988 88999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.56 E-value=35 Score=37.12 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=68.4
Q ss_pred EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecC-CCCCEEEEEEcC------CCCEEEEEe--CC-
Q 009059 386 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG-HKNQVHSVCWNT------SGEYLASVS--DE- 453 (545)
Q Consensus 386 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~-h~~~I~~l~~sp------~g~~l~s~s--dg- 453 (545)
.++....+..+.|..++..+++....|.|.+||...+.... .+.. +...+..-+|-+ ...++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44566789999999999999999999999999993322111 2211 222121112222 223444433 22
Q ss_pred --cEEEEEcCCCCCcceEEEEe---eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 454 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 454 --~I~vwd~~~~~~~~~i~~~~---~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++..-+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2223332 222333334443333334333 7779999999877655
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.55 E-value=31 Score=36.45 Aligned_cols=173 Identities=8% Similarity=-0.016 Sum_probs=80.3
Q ss_pred CcEEEEEcCC-------CcEEEEECCCCceeeEEe---ccC--CeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCE
Q 009059 361 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 423 (545)
Q Consensus 361 ~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~---~~~--~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~ 423 (545)
+.+++.|+.+ ..+.+||+.+.+-...-. .+. ........-++..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566566642 247788887755432111 011 01111122233455555543 468899998764
Q ss_pred EEE--Eec--CCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCE
Q 009059 424 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 424 ~~~--~~~--~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~ 490 (545)
-.. .+. .....-.+++. -++++++.|+ ++ .+..||+.+..- ..+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 332 111 01111122222 2455555555 32 467788765421 111100 000111 12222 25566
Q ss_pred EEEEEcC----CeEEEEeCCCCeEEEeccC-----CCCeeEEEEeCCCCEEEEEeCC
Q 009059 491 LLVIGCY----ETLELWNMTENKTLTLSAH-----DKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 491 l~~~~~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spd~~~las~s~D 538 (545)
++.++.+ ..+.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6666654 4689999998877644321 1111222 23356777777753
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=27 Score=35.65 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.7
Q ss_pred cEEEEECCCCceee
Q 009059 372 EIRYWSINNGSCAG 385 (545)
Q Consensus 372 ~I~lwd~~~~~~~~ 385 (545)
.+.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889987765543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.48 E-value=24 Score=35.17 Aligned_cols=142 Identities=14% Similarity=0.195 Sum_probs=81.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCe------EEEEECCCCC---eee-----eEeccCcc--------cEEEEEEeCCCCcE
Q 009059 306 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHST--------TVMSLDFHPSKEDL 363 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~------I~vwd~~~~~---~~~-----~~~~~h~~--------~V~~l~~~p~~~~l 363 (545)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+..-.+ ..-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45677888866566666677776 5555544310 001 11111111 34477885554 45
Q ss_pred EEEEcCC------CcEEEEECCCCceeeEEe----------------ccCCeeEEEEeCCCCEEEEEEC-----CC----
Q 009059 364 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAI-----EN---- 412 (545)
Q Consensus 364 l~s~s~d------g~I~lwd~~~~~~~~~~~----------------~~~~v~~l~~sp~~~~l~~~~~-----dg---- 412 (545)
+++.-.+ ..|+.++.. ++....+. .+.+...++++|++..|+++.. |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 5465556 678888876 55544432 2334778999999987777654 22
Q ss_pred -------eEEEEECCC-CE----EEEEecC-----CCCCEEEEEEcCCCCEEEE
Q 009059 413 -------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 413 -------~I~i~d~~~-~~----~~~~~~~-----h~~~I~~l~~sp~g~~l~s 449 (545)
.|..||..+ +. ....+.. ....|..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244456554 21 2223332 3467888888899887765
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.25 E-value=6.6 Score=40.62 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=16.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
.|..+..++.|..++.+| .+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G-~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG-IKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEec-CCeeEEEE
Confidence 577778888876655444 46654443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=89.23 E-value=26 Score=35.16 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=22.9
Q ss_pred eEEEEeCCCCeEEEeccCCCC-eeEEEEeCCCCEEEEEeCCC
Q 009059 499 TLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~~h~~~-V~~l~~spd~~~las~s~Dg 539 (545)
.+.+||.++.+...+...... -...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888877655433222111 12223345788888888653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.00 E-value=4.1 Score=46.72 Aligned_cols=137 Identities=9% Similarity=0.143 Sum_probs=85.6
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc--------CC-CCEEEEEeCCcEEEEEcCCCCC----cc--eEEEE
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWN--------TS-GEYLASVSDELVRVWSIGSGSK----GE--CIHEL 472 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s--------p~-g~~l~s~sdg~I~vwd~~~~~~----~~--~i~~~ 472 (545)
.+.|+.+.+|+.+++.....+.+-...|..+..- |. ..+|+.+.--.|.++-+.-... .. ....+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3568999999999977777777666666666542 22 2344555555566654432211 01 11233
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCC----e-----------------EEEec-cCCCCeeEEEEeCC
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN----K-----------------TLTLS-AHDKLVSSLAASTV 528 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~----~-----------------~~~~~-~h~~~V~~l~~spd 528 (545)
...+..|.++....+|+ ++.+|.||.|+- |...++ + ...+. .+..+|..|++...
T Consensus 175 ~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 34466788888778888 555666664432 222221 0 11223 56779999999988
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
.++|.+-+..|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 88999999999999996
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.86 E-value=27 Score=34.96 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-------CcEEEEEcCCCeEEEEe--cc-CCc---cEEEEEEcCCCCEEEEEeCC-----CeEEEEECC
Q 009059 274 DGKLLATGGHD-------KKAVLWCTESFTVKSTL--EE-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 335 (545)
Q Consensus 274 dg~~latg~~d-------g~I~lwd~~~~~~~~~l--~~-h~~---~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~ 335 (545)
++++++.|+.+ ..+.+||..+.+-.... .. ... ....+.+ ++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 35566666653 35778887764322111 00 010 1222233 46677777653 257788887
Q ss_pred CCCe
Q 009059 336 NPDY 339 (545)
Q Consensus 336 ~~~~ 339 (545)
+...
T Consensus 110 t~~W 113 (341)
T PLN02153 110 KNEW 113 (341)
T ss_pred CCEE
Confidence 6543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.46 E-value=30 Score=35.02 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=102.2
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEe----CCCCE--EEEEEC-C---CeEEEEECC--CCEEEEEe
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ----PRLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 428 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s----p~~~~--l~~~~~-d---g~I~i~d~~--~~~~~~~~ 428 (545)
+.+++....++-+.+||+. |+.+..+.. +..+.+..- -.+.. |++++. + ..|++|.+. ++.. ..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEc
Confidence 3466677788899999998 455555532 334333321 23333 444443 2 468888664 4433 222
Q ss_pred cC-------CCCCEEEEEEc--C-CCCEEEE-Ee-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 429 QG-------HKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 429 ~~-------h~~~I~~l~~s--p-~g~~l~s-~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
.. ....++.+|+. + +|.+.+. .. +|.+..|.+..... ...++++.. ...+..|+......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777763 3 4654444 44 88888888753222 245666664 45899999999999999
Q ss_pred EEEcCCeEEEEeCCCC-----eEEEe-cc--CCCCeeEEEEeC--CC-CEEEEEe-CCCcEEEcC
Q 009059 493 VIGCYETLELWNMTEN-----KTLTL-SA--HDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~-----~~~~~-~~--h~~~V~~l~~sp--d~-~~las~s-~Dg~I~iWd 545 (545)
++-.+..|+-|+.+-. ..+.. .+ ....|-.|++-. ++ .||+..+ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999999988522 22222 22 346678887753 33 3555554 466777774
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.1 Score=28.24 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=26.9
Q ss_pred ccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCC
Q 009059 349 TTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 349 ~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~ 380 (545)
+.|.++.|+|... .||+....-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 7888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.43 E-value=34 Score=38.79 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=88.3
Q ss_pred EEEEECCCCCeeeeEec-c---CcccEEEEEEeCCCCc-EEEEEc-----------CCCcEEEEECC-CCceeeEEeccC
Q 009059 329 VRVWDTENPDYSLRTFT-G---HSTTVMSLDFHPSKED-LLCSCD-----------NNSEIRYWSIN-NGSCAGVFKCQS 391 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~-~---h~~~V~~l~~~p~~~~-ll~s~s-----------~dg~I~lwd~~-~~~~~~~~~~~~ 391 (545)
|+++|..+++. +..+. + ..-.+..+.|+..... ++++|. .+|.++.|++- .++.+. +-+..
T Consensus 855 I~~~d~~s~~~-~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le-llh~T 932 (1205)
T KOG1898|consen 855 IRVFDPKSGKI-ICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE-LLHKT 932 (1205)
T ss_pred EEEEcCCCCce-EEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee-eeecc
Confidence 66666665543 22111 1 1123555666554433 333332 23456666653 333222 22222
Q ss_pred C--eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 392 G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 392 ~--v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
. -.-.++.|-.+ .+.++....+++||+...+.++... .-...|..+.+ .+..+++|. ...|.++..+...
T Consensus 933 ~~~~~v~Ai~~f~~-~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~-- 1007 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQG-RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED-- 1007 (1205)
T ss_pred CCCccceEEeccCC-EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC--
Confidence 2 22345566656 4455667899999998876554332 23456777776 456677777 4444444433322
Q ss_pred ceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 467 ECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 467 ~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
..+..+... ...|+++.+- |...++.+..-|.+.+..+.
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 233333322 2335554443 45558888888888887664
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=87.92 E-value=24 Score=36.60 Aligned_cols=29 Identities=14% Similarity=0.392 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.|..++..+..+.+++...++.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 36666666666777777777777777764
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.91 E-value=6.7 Score=42.83 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCCEEEEEeCCCcEEEEEcCC-------C----e---------EEEEeccCCccEEEEEEc--CCCCEEEEEeCCCeEEE
Q 009059 274 DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRV 331 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~-------~----~---------~~~~l~~h~~~V~~l~~s--p~~~~l~t~s~dg~I~v 331 (545)
+...|+.|..||.|.+|.+++ . + +...+. -...++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556888999999999996531 1 0 111222 23468999998 77888999888888888
Q ss_pred EECCCC--CeeeeEeccCcccEEEEEEeCCC--C---cEEEEEcCCCcEEEEEC
Q 009059 332 WDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 332 wd~~~~--~~~~~~~~~h~~~V~~l~~~p~~--~---~ll~s~s~dg~I~lwd~ 378 (545)
|-+... +.....-..|...|-+|.|.++. . ..+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 21111112356678999997754 1 26778888999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.62 E-value=6.6 Score=39.21 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-----CEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-----QVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-----~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
+....++|...++.++++..---+...+...+.... +..+.. -.+.+..++ +|.|++=|..+.-.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~-l~~~~~G~~~kf~N~ldI~~---------~g~vyFTDSSsk~~ 184 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL-LADEAEGKPFKFLNDLDIDP---------EGVVYFTDSSSKYD 184 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCccee-ccccccCeeeeecCceeEcC---------CCeEEEeccccccc
Confidence 456788999998888888776666666666654221 111111 112233333 33333333322100
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
...+ .+ -++.+...|.+.-||..+.....+...-...+.++.|||+.+++.+=
T Consensus 185 ----------~rd~---~~-----a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 185 ----------RRDF---VF-----AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred ----------hhhe---EE-----eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence 0000 00 02333456678888988877666655566678899999999877663
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.29 E-value=15 Score=39.99 Aligned_cols=93 Identities=13% Similarity=0.249 Sum_probs=56.1
Q ss_pred eEEEEeCCCCEEEEEECCC-----eEEEEECCC---CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 394 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg-----~I~i~d~~~---~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
..+.|-|.|..+++...|| .|..|..+. |+.-.. .+....+..++|+-....++.+..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999988665 344454322 111011 12234566778877777777777889999987543
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.........-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222223445666788886643
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.21 E-value=45 Score=35.55 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=118.5
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccC-CccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCee-eeEecc
Q 009059 272 SPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS-LRTFTG 346 (545)
Q Consensus 272 spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h-~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~ 346 (545)
..++..++.+..+|.+....+.... .....-+. .....++.+..++ .+|+.|+.-|.=.++.+...... +..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4467788888999999887765433 11222222 4455667776554 47777776444333333322222 33333
Q ss_pred CcccEEEEEEeCC---CC-------cEEEEEc--CCCcEEEEECCCC---ceeeEEeccCCeeEEEEeCC----CCEEEE
Q 009059 347 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 407 (545)
Q Consensus 347 h~~~V~~l~~~p~---~~-------~ll~s~s--~dg~I~lwd~~~~---~~~~~~~~~~~v~~l~~sp~----~~~l~~ 407 (545)
.-++|..+++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4568888888532 12 4554443 5678888743111 1222222222 444332222 244554
Q ss_pred EECCCeEEEEECC---CCEEEEEec--C---CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee-CCCc
Q 009059 408 AAIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 478 (545)
Q Consensus 408 ~~~dg~I~i~d~~---~~~~~~~~~--~---h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~-~~~~ 478 (545)
+.. ..-+++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... ........ ....
T Consensus 377 S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 444 444455543 233332221 1 12233333333 55666666667888887655 34444332 3334
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-----cCCCCeeEEEEeC
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 527 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 527 (545)
|...+.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444443 356888888889999988777665 211 1467888888766
|
... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.3 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.7
Q ss_pred CCeeEEEEeCCC------CEEEEEeCCCcEEEcC
Q 009059 518 KLVSSLAASTVN------GMVASASHDKCVKIWK 545 (545)
Q Consensus 518 ~~V~~l~~spd~------~~las~s~Dg~I~iWd 545 (545)
..|.+++|||-| -+||+.+.+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 478999999955 2899999999999983
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.72 E-value=2.6 Score=42.69 Aligned_cols=163 Identities=11% Similarity=0.093 Sum_probs=96.7
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cc----cEE-EEEEeCCCCcEEEEEcCCC
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-ST----TVM-SLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~----~V~-~l~~~p~~~~ll~s~s~dg 371 (545)
+..+......|..+-..|||+.|+.-+. ..+.|+++.+.....+.+... .+ .|+ .+.....+..++ .++.||
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLL-v~~~dG 290 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLL-VVHEDG 290 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEE-EEcCCC
Confidence 3345555667888899999998887765 689999988765444433221 11 122 111122233344 777888
Q ss_pred cEEEE-ECCCCce-----eeEEecc-CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC
Q 009059 372 EIRYW-SINNGSC-----AGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 372 ~I~lw-d~~~~~~-----~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g 444 (545)
.|.-| |++.+.. ++.++.. ..+..+.-..+.+-++.-...|++.+|.....+.+..-. --..+.-++++|++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCccc
Confidence 88777 5543221 1222221 223223222333446666677888877655444333222 22356778999999
Q ss_pred CEEEEEeCCcEEEEEcCCC
Q 009059 445 EYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 445 ~~l~s~sdg~I~vwd~~~~ 463 (545)
.++++-..|.|+++.+++.
T Consensus 370 ~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 370 AYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred chheeecCCceEEEEecCC
Confidence 9999888889999998765
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.46 E-value=17 Score=42.02 Aligned_cols=157 Identities=13% Similarity=0.241 Sum_probs=94.5
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEE--------EeCCCCEEEEEECCCeEEEE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR--------FQPRLGRILAAAIENYISIL 417 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~--------~sp~~~~l~~~~~dg~I~i~ 417 (545)
|...-..+-+.|.=...-++- |..+.+|+.+++.....+.. ...|..+. |.|.=.++++.+..-.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTi--Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITI--DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEEEe--CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 333344444555433444343 88999999998654444432 12233322 33444566666666666665
Q ss_pred ECC----CCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC--CCCC--cc-e---------------
Q 009059 418 DVE----TQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG--SGSK--GE-C--------------- 468 (545)
Q Consensus 418 d~~----~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~--~~~~--~~-~--------------- 468 (545)
-+. ++.. ..++......|.|+....+|+.+.+|.||. +|.+. .... .. |
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 432 1111 122333456789999889999999999884 44431 1100 00 0
Q ss_pred -EEEEe-eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 469 -IHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 -i~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+. .+..+|..+.+...-..+++-+..++|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11122 4467899999999989999999999999999976
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=86.04 E-value=14 Score=35.86 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=66.7
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEe-----ccCCeeE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFK-----CQSGATQ 395 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~-----~~~~v~~ 395 (545)
..|++||..+.+. ...-.+-.+.|+++.|..+ +.++++|. ....+..||+.+......-. .++++..
T Consensus 16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEe-ecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 4699999987665 3333456789999999844 56776764 35578889988765422222 2356777
Q ss_pred EEEeC-CCCEEE-EEE-C--CCeEEEEECCCCEEEEE-ecCCCCCEEEEEE
Q 009059 396 MRFQP-RLGRIL-AAA-I--ENYISILDVETQVCRLK-LQGHKNQVHSVCW 440 (545)
Q Consensus 396 l~~sp-~~~~l~-~~~-~--dg~I~i~d~~~~~~~~~-~~~h~~~I~~l~~ 440 (545)
+.+.. +...+. +|. . +..|..||-.....+.. .......|..+.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 77643 333344 333 2 34677777665554443 2222345555544
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=85.61 E-value=21 Score=33.85 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred EEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC-C-CeeeeEe---ccCcccEEEEEEeC
Q 009059 287 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D--RTVRVWDTEN-P-DYSLRTF---TGHSTTVMSLDFHP 358 (545)
Q Consensus 287 I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-d--g~I~vwd~~~-~-~~~~~~~---~~h~~~V~~l~~~p 358 (545)
-.+||+.+.+....--...-....-.|.+||++|.+|+. + ..+++++... . ....... -.....--.....+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888876554222222222333457789999999875 2 3578887643 1 1111111 11122233444567
Q ss_pred CCCcEEEEEcCCCcEEEEECCCC-ceeeEEec---------cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe
Q 009059 359 SKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC---------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 428 (545)
Q Consensus 359 ~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~---------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 428 (545)
||+.+++.|...-..-+|.-... .....+.. ..--..+...|+|+.++.+..+ -.|||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 88766655555445556654321 11111110 0112356678887777776654 445688888776666
Q ss_pred cC
Q 009059 429 QG 430 (545)
Q Consensus 429 ~~ 430 (545)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 54
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=62 Score=35.26 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=103.0
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce----eeEEeccCCeeEEEEeCCCCEEEEEEC--CC--eEEEEECCC
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAI--EN--YISILDVET 421 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~~~~~--dg--~I~i~d~~~ 421 (545)
.+.+++.++++..+.+.......+++..+..+.. ..........+.-.|.+++ .+.+... ++ .++++.- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6788899998866665544334676666543332 1122223446677787775 5555532 22 2555543 3
Q ss_pred CEEEE-EecCCC-CCEEEEEEcCCCCEEEEEeC----CcEEEEEcCCCCCcc-eEE---EEeeCCCceEEEEEcCCCCEE
Q 009059 422 QVCRL-KLQGHK-NQVHSVCWNTSGEYLASVSD----ELVRVWSIGSGSKGE-CIH---ELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 422 ~~~~~-~~~~h~-~~I~~l~~sp~g~~l~s~sd----g~I~vwd~~~~~~~~-~i~---~~~~~~~~v~~~~~sp~~~~l 491 (545)
++... ...... ..|..+..++||-.++...+ +.|.|=-+....... .+. .+......+..+.|..+...+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 33321 111222 37999999999987766542 466665554322221 111 222223458999999999866
Q ss_pred EEEEc-C--CeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcE
Q 009059 492 LVIGC-Y--ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCV 541 (545)
Q Consensus 492 ~~~~~-d--g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I 541 (545)
+.+.. . ..+++.++...... .....-..+..|+-..+.+ .|+.+..++.|
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 65533 2 24555555544332 1223445566677766665 55553444444
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.16 E-value=60 Score=35.10 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC----cEEEEEC
Q 009059 308 ITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSI 378 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg----~I~lwd~ 378 (545)
+-.++.+||.+++|-+-..- ++++-|+.++......+. +....++|.+++..++++-..+. .|....+
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Q ss_pred CC--CceeeEEeccCC--eeEEEEeCCCCEEEEEECCC---eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 379 NN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 379 ~~--~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
.+ ..-...+..... ...+.-+....+|+....+. .+++.+.........+-.....=........+.++..-+
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~s 287 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILS 287 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEe
Q ss_pred --CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEE-EeccCCCCeeEEE
Q 009059 452 --DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL-TLSAHDKLVSSLA 524 (545)
Q Consensus 452 --dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~-~~~~h~~~V~~l~ 524 (545)
+| ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++... ...........+.
T Consensus 288 N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~ 367 (682)
T COG1770 288 NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLS 367 (682)
T ss_pred cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhcccc
Q ss_pred EeCC
Q 009059 525 ASTV 528 (545)
Q Consensus 525 ~spd 528 (545)
.+++
T Consensus 368 ~~~e 371 (682)
T COG1770 368 GNPE 371 (682)
T ss_pred CCCC
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=84.88 E-value=40 Score=35.17 Aligned_cols=120 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-----eCCCceEEEEEcCCC----
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTF---- 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-----~~~~~v~~~~~sp~~---- 488 (545)
...+-.+..+...-...+.|+|.|+|++|++-- .|.|++++..+... ..+..+. ........++++|+.
T Consensus 16 ~p~~f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-~~~~~l~~v~~~~ge~GLlglal~PdF~~~~ 94 (454)
T TIGR03606 16 ASENFDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-KVVFTLPEIVNDAQHNGLLGLALHPDFMQEK 94 (454)
T ss_pred CCCCcEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-eeeecCCceeccCCCCceeeEEECCCccccC
Q ss_pred --CEEEEEE----------cCCeEEEEeCCCC-------eEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 489 --PSLLVIG----------CYETLELWNMTEN-------KTL---TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 489 --~~l~~~~----------~dg~I~iwd~~~~-------~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+|++.. ....|.-|.+... +.+ .-......-..|.|.|||.++++.++.+
T Consensus 95 ~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 95 GNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=84.71 E-value=57 Score=34.48 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCEEEEE---eCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-c
Q 009059 274 DGKLLATG---GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-T 349 (545)
Q Consensus 274 dg~~latg---~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~ 349 (545)
++=+++.. .....+.++| ..|..+..+.........+.+.++|.+++... ..+..+|+.........+.... .
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccc
Q ss_pred cEEEEEEeCCCCcEEEEEc-------------CCCcEEEEECCCCceeeEEeccCCe-----------------------
Q 009059 350 TVMSLDFHPSKEDLLCSCD-------------NNSEIRYWSINNGSCAGVFKCQSGA----------------------- 393 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s-------------~dg~I~lwd~~~~~~~~~~~~~~~v----------------------- 393 (545)
--..+...|+|+.|+++.. .|. |..+| .+|+.+..+......
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Q ss_pred -----eEEEEeCCCCEEEEEECCC-eEEEEECCCCEEEEEecCCCCC
Q 009059 394 -----TQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQ 434 (545)
Q Consensus 394 -----~~l~~sp~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~ 434 (545)
.++.+.+..+.|++.+..- .|..+|.++++....+..+...
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 545 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-25 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-21 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-21 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-21 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 8e-21 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 8e-21 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-21 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-21 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-20 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-20 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-20 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-20 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-20 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-20 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-20 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-20 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-19 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 7e-16 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-15 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-14 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 5e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 7e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-10 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 5e-10 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 5e-10 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 6e-10 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 6e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 9e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 9e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 7e-09 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 8e-09 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-09 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 4e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 7e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 7e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 7e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 6e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 6e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 3e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 3e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-04 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 9e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.82 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.81 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.77 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.77 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.74 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.72 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.69 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.68 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.67 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.67 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.66 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.66 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.64 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.62 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.6 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.59 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.54 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.51 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.5 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.5 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.46 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.46 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.45 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.42 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.37 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.33 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.3 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.3 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.29 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.29 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.22 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.18 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.18 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.18 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.17 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.08 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.08 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.06 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.98 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.97 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.95 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.95 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.93 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.92 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.92 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.9 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.9 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.86 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.84 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.82 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.81 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.81 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.79 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.78 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.76 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.75 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.71 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.69 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.67 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.66 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.64 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.59 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.58 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.55 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.53 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.53 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.49 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.48 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.46 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.39 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.38 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.34 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.31 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.29 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.25 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.22 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.18 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.17 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.16 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.12 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.07 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.03 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.02 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.02 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.02 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.96 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.94 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.89 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.87 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.87 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.86 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.84 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.82 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.74 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.7 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.65 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.57 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.53 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.51 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.49 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.45 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.44 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.33 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.28 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.22 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.22 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.13 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.13 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.12 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.95 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.9 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.88 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.87 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.85 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.77 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.51 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.46 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.44 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.42 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.42 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.36 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.33 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.95 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.93 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.16 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.35 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 93.91 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.84 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.72 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.67 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 93.02 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.35 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 92.04 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 91.38 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.45 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 88.26 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 88.01 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.16 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 85.7 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 85.28 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 84.22 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=383.94 Aligned_cols=284 Identities=26% Similarity=0.485 Sum_probs=266.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
..+.+|.++|++++|+|++.+||+|+.|+.|+|||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
... +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+..+ ..+.++.+++++..+++++.|+.|+
T Consensus 182 ~~~-~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cce-eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 664 888999999999999999975 5559999999999999999998888744 4689999999999999999999999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCC--------------------CCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~--------------------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899999 999999999887 78889999
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988876 7789999999999999999999999999999997
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=368.04 Aligned_cols=288 Identities=19% Similarity=0.367 Sum_probs=262.9
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
++....+++|.+.|++++|+||+++|++|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEE
Q 009059 333 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 333 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~ 408 (545)
++.+.. .....+.+|.+.|.++.|++++ . +++++.|+.|++||+.+++++..+. +...+.+++|+|++..++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-c-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 998654 2356778999999999999875 3 5688899999999999999988886 45679999999999999999
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--CCCceEEEEEc
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH 485 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~s 485 (545)
+.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|+
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence 9999999999999999999999999999999999999999999 999999999876 44555442 23479999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 486 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999988877 7889999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=362.70 Aligned_cols=286 Identities=18% Similarity=0.325 Sum_probs=261.5
Q ss_pred EEEeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 255 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
.++.+.+|.+.|++++|+|+ +.+||+|+.|++|+||++...+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34667899999999999984 67999999999999999987654 4578999999999999999999999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA 407 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~ 407 (545)
|++||+.+++. +..+..|...+.+++|+|++. ++++++.||.|++||+++++....+..+ ..+.+++|+|++.+|++
T Consensus 104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998764 778888999999999999976 5558999999999999999888777644 45899999999999999
Q ss_pred EECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC
Q 009059 408 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 486 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp 486 (545)
++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++ |+.|++||++++ .++..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999877 67788899999999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+|++++.|+.|++||+.+++++ .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999888 7789999999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=359.20 Aligned_cols=288 Identities=17% Similarity=0.282 Sum_probs=259.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.....+.+|.+.|+|++|+|++++||+|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeC--CCCEE
Q 009059 334 TENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGRI 405 (545)
Q Consensus 334 ~~~~~-----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp--~~~~l 405 (545)
+.... .....+.+|...|.++.|+|++.. +++++.|++|++||+++++++..+.. ...+.++.|+| ++..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 86431 234567789999999999999755 55899999999999999999988874 45689999987 46799
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC--CCceEEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHSC 482 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~ 482 (545)
++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++.. ..+..+..+ ...+.++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEE
Confidence 9999999999999999999999999999999999999999999999 999999999876 444444433 3468999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999888877 7789999999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=370.63 Aligned_cols=289 Identities=17% Similarity=0.337 Sum_probs=258.8
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
...+++.+|.+.|++++|+|++++||+|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC------eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------ccCCeeEEEEeC-
Q 009059 334 TENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQP- 400 (545)
Q Consensus 334 ~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------~~~~v~~l~~sp- 400 (545)
+.+.. .....+.+|.+.|.++.|.|++...+++|+.|++|++||+.+++++..+. +...+.++.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 87532 12456789999999999999877777899999999999999999887763 345689999987
Q ss_pred CCCEEEEEECCCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC--
Q 009059 401 RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-- 476 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-- 476 (545)
++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ .++..+..+.
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~ 293 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDR 293 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccccc
Confidence 77889999999999999998 4577888999999999999999999999999 999999999987 5566554432
Q ss_pred -----CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 477 -----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 477 -----~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.+++|+|++++|++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.||+|+||+
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 24889999999999999999999999999988876 44 57999999999999999999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=345.43 Aligned_cols=283 Identities=18% Similarity=0.311 Sum_probs=253.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..+++.+|.+.|++++|+|++++|++|+.||.|+|||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEEEEeC-CCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQP-RLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l~~sp-~~~~l~~~~~d 411 (545)
.++.. +..+.+|...|.+++|+|++. ++++|+.|++|++||++++.. ...+. +...|.+++|+| ++..+++++.|
T Consensus 85 ~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred CCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 98775 788999999999999999975 556999999999999988744 44454 456699999999 56789999999
Q ss_pred CeEEEEECCCCEEEEEec-CCCCCEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+.|++||+++......+. +|...+..+.|+| ++.+|++++ |+.|++||++++ .++..+.+|...|.+++|+|+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCC
Confidence 999999998876555544 5668899999987 678999999 999999999887 788999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC--EEEEEeCCCcEE
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 542 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~--~las~s~Dg~I~ 542 (545)
+++|++++.|+.|++||+.+++.. .+..|...+++++|+|+++ +|++|+.||.+.
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 999999999999999999999888 7778999999999999885 688888887543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=345.26 Aligned_cols=289 Identities=19% Similarity=0.330 Sum_probs=251.3
Q ss_pred ceeeEEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCccEEEEEEcCCCCEEEEE
Q 009059 250 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 323 (545)
Q Consensus 250 ~~~~~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~V~~l~~sp~~~~l~t~ 323 (545)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999863 34567889999999999999999999999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCC--
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 401 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~-- 401 (545)
+.|++|++||+.+++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGET-YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCCe-eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 9999999999998764 788999999999999999865 566999999999999975444333445667999999985
Q ss_pred ----CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC
Q 009059 402 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 402 ----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++ |+.|++||+.++ .++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 34799999999999999999999999999999999999999999999999 999999999887 66666664 5
Q ss_pred CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec--------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 477 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS--------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~--------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.+++|+|++.+|++++. +.+++|++.....+ .+. .|...+.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998777664 56999999887665 222 3567899999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=348.48 Aligned_cols=293 Identities=25% Similarity=0.431 Sum_probs=250.1
Q ss_pred eeEEEEeecCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE---EEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 252 TFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 252 ~~~~~~~l~~H~~-~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~---~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+..+..+.+|.+ .|++++|+|+|++||+|+.|+.|+|||+.++... ....+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456788999998 9999999999999999999999999999887643 23368999999999999999999999999
Q ss_pred eEEEEECCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEe-ccCCeeEEEEeCCC
Q 009059 328 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRL 402 (545)
Q Consensus 328 ~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~-~~~~v~~l~~sp~~ 402 (545)
+|++||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.. +..+. +...+.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999987643 4678899999999999999975 566999999999999987643 33343 44569999999999
Q ss_pred CEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------------cc
Q 009059 403 GRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GE 467 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~------------~~ 467 (545)
.+|++++.|+.|++||.+++. +...+.+|...|.+++|+|++++|++++ |+.|+|||...... ..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 4578899999999999999999999999 99999999743221 13
Q ss_pred eEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe--------EE--EeccCCCCeeEEEEeCCC-CEEEEE
Q 009059 468 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASA 535 (545)
Q Consensus 468 ~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------~~--~~~~h~~~V~~l~~spd~-~~las~ 535 (545)
++..+.. |...|.+++|+|++..|++++.|+.|++|+..... .. ...+|...|++++|+|++ .+||+|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 4445554 77889999999999999999999999999986542 11 235899999999999998 599999
Q ss_pred eCCCcEEEcC
Q 009059 536 SHDKCVKIWK 545 (545)
Q Consensus 536 s~Dg~I~iWd 545 (545)
+.||+|+||+
T Consensus 323 s~Dg~v~~W~ 332 (345)
T 3fm0_A 323 SDDGEVAFWK 332 (345)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 9999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=354.97 Aligned_cols=282 Identities=28% Similarity=0.459 Sum_probs=251.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc------------------cEEEEEEcCCCCEEEE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 322 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~------------------~V~~l~~sp~~~~l~t 322 (545)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeC-C
Q 009059 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 401 (545)
Q Consensus 323 ~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp-~ 401 (545)
|+.|+.|+|||+.+++. +..+.+|...|.+++|+|++.. +++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 99999999999998764 7889999999999999999765 5599999999999999999999998888999999999 8
Q ss_pred CCEEEEEECCCeEEEEECCCCEEEEEe-------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC--------
Q 009059 402 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 465 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-------- 465 (545)
+.++++++.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 889999999999999999999877766 57899999999999999999999 99999999976421
Q ss_pred -cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC------CCCEEEEEeC
Q 009059 466 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 537 (545)
Q Consensus 466 -~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp------d~~~las~s~ 537 (545)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++++||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456678889999999999999999999999999999999999887 7789999999999986 6789999999
Q ss_pred CCcEEEcC
Q 009059 538 DKCVKIWK 545 (545)
Q Consensus 538 Dg~I~iWd 545 (545)
||+|+||+
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=335.66 Aligned_cols=288 Identities=24% Similarity=0.456 Sum_probs=258.5
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+.....+.+|.+.|++++|+|++++||+|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECC
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~d 411 (545)
|+.++.. +..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGKC-LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 9998764 788899999999999999975 566999999999999999998888764 4579999999999999999999
Q ss_pred CeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE---EEEEcC
Q 009059 412 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 486 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~---~~~~sp 486 (545)
+.|++||+++++.+..+. .+...+.+++|+|++++|++++ |+.|++||++++ .++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877664 4667899999999999999999 999999999887 67777777765432 233446
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEe--CCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s--~Dg~I~iWd 545 (545)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999888 7889999999999999999999997 699999995
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=342.95 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.1
Q ss_pred eeEEEEeecCCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCC-------CeEEEEeccCCccEEEEEEcCCCC
Q 009059 252 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~-----sp-dg~~latg~~dg~I~lwd~~~-------~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
.+.....+++|.+.|++++| ++ ++++||+|+.|++|+|||+.. +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 44567789999999999999 77 999999999999999999874 345678899999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---eccCCeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 395 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~---~~~~~v~~ 395 (545)
+|++++.|++|++||+.++.. +..+.+|...|.+++|+|++.. +++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTT-YKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCE-EEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 999999999999999998764 7889999999999999999764 558999999999999844332222 24456999
Q ss_pred EEEeCCC----------CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 396 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 396 l~~sp~~----------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677778889999999999999999999999 9999999995442
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Eec-----------cCCCCeeEEEEeCCCC
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 530 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-----------~h~~~V~~l~~spd~~ 530 (545)
. ....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 ~--~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 Y--PQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp S--CSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred c--cceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 2 22222 2456799999999998655 567888999999876543 222 6888899999999999
Q ss_pred EEEEEeCCCcEEEcC
Q 009059 531 MVASASHDKCVKIWK 545 (545)
Q Consensus 531 ~las~s~Dg~I~iWd 545 (545)
+|++|+.||.|++|+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=370.50 Aligned_cols=297 Identities=18% Similarity=0.270 Sum_probs=251.3
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
..+++|+ .+. ....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++.+..+.+|...|.+++|+|+++
T Consensus 129 ~~v~~wd--~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 129 GHVFLFD--TGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp EEEEETT--TCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEee--CCC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC
Confidence 3555665 333 2456889999999999999987 599999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEec-------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--- 388 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~-------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--- 388 (545)
+|++++.|++|++||+.++.. +..+. +|.+.|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 204 ~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 204 LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 999999999999999988764 55553 7999999999999975 55699999999999999887655432
Q ss_pred -----------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 389 -----------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 389 -----------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
+...|.+++|+|++.+|++++.|+.|++||+.++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 335689999999999999999999999999987644322
Q ss_pred e-c-----------------------------------------------------------------------------
Q 009059 428 L-Q----------------------------------------------------------------------------- 429 (545)
Q Consensus 428 ~-~----------------------------------------------------------------------------- 429 (545)
+ .
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 1 0
Q ss_pred ----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 430 ----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 430 ----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.|...+.+++|+|+|++|++++ |+.|++||+..+.. ..+.. ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 1234578899999999999999 99999999976521 22334 67899999999999999999999999999999
Q ss_pred CCC-CeEEE---eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 505 MTE-NKTLT---LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~-~~~~~---~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.+ ++... +..|...|++++|+||+++||+|+.|++|+|||
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 987 55442 234999999999999999999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=370.77 Aligned_cols=302 Identities=20% Similarity=0.303 Sum_probs=255.8
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-------cCCccE
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWI 308 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-------~h~~~V 308 (545)
.+.|..+++|+...+ +.+..+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+. +|.+.|
T Consensus 166 ~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 166 GSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp EETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred EeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 345788999997665 3467789999999999999999999999999999999999999888884 799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCee------------------------------------------eeEecc
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------------------LRTFTG 346 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~------------------------------------------~~~~~~ 346 (545)
.+++|+|++++|++++.|++|++||+.+++.. ...+.+
T Consensus 243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 99999999999999999999999999865421 234467
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---------------------------------------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--------------------------------------- 387 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--------------------------------------- 387 (545)
|...|++++|+|++. +|++++.|+.|++||+.++++...+
T Consensus 323 h~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~ 401 (611)
T 1nr0_A 323 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD 401 (611)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred CCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence 999999999999976 5559999999999999876543211
Q ss_pred --------------------------------------------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE
Q 009059 388 --------------------------------------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 388 --------------------------------------------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
.+...+.+++|+|++.++++++.|+.|++||+.++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 111336789999999999999999999999998765
Q ss_pred E--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE--EeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 424 C--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 424 ~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~--~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
. ... .+|...|++++|+|+|++|++++ |+.|++||+.+.. .++.. +..|...|.+++|+|++++|++++.|+
T Consensus 482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~ 558 (611)
T 1nr0_A 482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558 (611)
T ss_dssp EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence 3 233 67999999999999999999999 9999999998621 22222 334889999999999999999999999
Q ss_pred eEEEEeCCCCe--E-EEeccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~--~-~~~~~h-~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++||+.++. . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus 559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 99999998764 2 356689 89999999999998 99999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=344.43 Aligned_cols=279 Identities=15% Similarity=0.208 Sum_probs=234.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeE
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 329 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-----------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I 329 (545)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77888887321 01111222356789999999984 78899999999
Q ss_pred EEEECCCCCeee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-E
Q 009059 330 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-R 404 (545)
Q Consensus 330 ~vwd~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~-~ 404 (545)
+|||+.+++... ..+.+|.+.|++++|+|++. +|++|+.|+.|++||+.+++++..+. +...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999998876422 23458999999999999975 55699999999999999999998887 456799999999875 5
Q ss_pred EEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~-g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
+++++.|+.|++||+++++....+. .|...+.+++|+|+ +++|++|+ |+.|++||++++ .++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7788999999999999998877764 35668999999985 57888888 999999999887 67788999999999
Q ss_pred EEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 481 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 481 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
+++|+|++ ++|++++.|++|+|||+.+++++.+.+|.+.|++++|+|+++ +|++++.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=335.95 Aligned_cols=289 Identities=21% Similarity=0.331 Sum_probs=236.4
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEe-cc-CCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l-~~-h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
+..+..+.+|.+.|++++|+++ +||+|+.|+.|+|||+..+ +....+ .+ |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999987 9999999999999999874 455556 44 9999999999999999999999999
Q ss_pred EEEEECCCC------CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCeeEEE
Q 009059 329 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 397 (545)
Q Consensus 329 I~vwd~~~~------~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v~~l~ 397 (545)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998532 124567889999999999999975 5669999999999999532 4455554 456799999
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCc-----c
Q 009059 398 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 467 (545)
Q Consensus 398 ~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~--g~~l~s~s-dg~I~vwd~~~~~~~-----~ 467 (545)
|+|++..|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999998754211 2
Q ss_pred eEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeE--E-E-eccCCC-CeeEEEEeC--CCCEEEEEeCCC
Q 009059 468 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 539 (545)
Q Consensus 468 ~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~-~-~~~h~~-~V~~l~~sp--d~~~las~s~Dg 539 (545)
+...+.. |...|.+++|++++ +|++++.|+.|++||..+++. . . ..+|.. .|.+++|+| ++++||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3344444 78899999999765 799999999999999988742 3 2 357877 899999999 688999999999
Q ss_pred cEEEcC
Q 009059 540 CVKIWK 545 (545)
Q Consensus 540 ~I~iWd 545 (545)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=346.14 Aligned_cols=282 Identities=13% Similarity=0.161 Sum_probs=236.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~------dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
..+|.+.|++++|+|||++||+|+. |+.|++|+..++... ....+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 4579999999999999999999997 778999998776543 33456889999999999875 556788999
Q ss_pred EEEEECCCCCeee---eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCC-
Q 009059 329 VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG- 403 (545)
Q Consensus 329 I~vwd~~~~~~~~---~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~- 403 (545)
|+|||+.+++... ....+|...|++++|+|++. +|++|+.|+.|++||+++++++..+.. ...+.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 9999998765321 24457999999999999975 455999999999999999999988874 56799999999875
Q ss_pred EEEEEECCCeEEEEECCCCEEEEEe--cCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 404 RILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
.+++++.|+.|++||+++++....+ ..|...+.+++|+|++ .+|++++ |+.|++||++++ .++..+..|...|
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v 272 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI 272 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence 6888999999999999998766544 3467789999999974 6888888 899999999887 6777888999999
Q ss_pred EEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeC-CCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp-d~~~las~s~Dg~I~iWd 545 (545)
.+++|+|++ ++|++++.|+.|+|||+++++++...+|.+.|++|+|+| ++.+|++++.||+|++||
T Consensus 273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 999999987 578899999999999999999998889999999999998 789999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=353.04 Aligned_cols=294 Identities=27% Similarity=0.455 Sum_probs=260.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.+..+++|+.... .+..+.+|...|.+++|+|++++|++++.|+.|++||... +.+..+.+|...|.+++|+|++
T Consensus 282 ~d~~i~~w~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g 356 (577)
T 2ymu_A 282 DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDG 356 (577)
T ss_dssp TTSCEEEEETTSC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTS
T ss_pred CCCEEEEEeCCCc----EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCC
Confidence 4667889986432 4567889999999999999999999999999999999765 5566788999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l 396 (545)
++|++++.|+.|++||.. +. .+..+.+|...|.+++|+|++..+ ++++.|+.|++||.. ++.+..+. +...+.++
T Consensus 357 ~~l~~~~~dg~v~~~~~~-~~-~~~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNRN-GQ-LLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SEEEEEETTSEEEEEETT-CC-EEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT-CCEEEEEECCSSCEEEE
T ss_pred CEEEEEeCCCEEEEEcCC-CC-EEEEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEE
Confidence 999999999999999965 33 478888999999999999998655 588899999999965 55555554 55679999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+|+|++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ |+.|++||.. + .++..+..|
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h 507 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGH 507 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECC
T ss_pred EECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeCC
Confidence 99999999999999999999996 5667788899999999999999999999999 8999999953 3 678889999
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...|++++|+|++++|++++.|+.|++||........+.+|...|++++|+||+++|+|++.|++|++||
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999999976544448889999999999999999999999999999998
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=329.94 Aligned_cols=284 Identities=18% Similarity=0.253 Sum_probs=254.9
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceee-----------EEe-ccC--CeeE
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG-----------VFK-CQS--GATQ 395 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~-----------~~~-~~~--~v~~ 395 (545)
.+++. +..+. +...|.+++|+|++..++ +++.+ +.|++||+....... .+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGNYFL-AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSSEEE-EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCCEEE-EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98775 56665 888999999999976555 66667 999999998654322 222 222 7999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 396 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++|+|++..+++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||+.++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788899999999999999999999999998 999999999887 5555555
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCC--------------eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg--------------~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
+...+..++|+|++.++++++.++ .+++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 778899999999999999999988 8999999999888 778899999999999999999999999
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
|.|+||+
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=323.23 Aligned_cols=288 Identities=19% Similarity=0.332 Sum_probs=247.1
Q ss_pred eeeEEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC-----eEEEEeccCCccEEEEEEcCCCCEEEEEe
Q 009059 251 FTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSS 324 (545)
Q Consensus 251 ~~~~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~-----~~~~~l~~h~~~V~~l~~sp~~~~l~t~s 324 (545)
+.+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 344556789999999999999997 689999999999999998754 35677899999999999999999999999
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE--eccCCeeEEEEeCCC
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRL 402 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--~~~~~v~~l~~sp~~ 402 (545)
.|+.|++|+...... ......+...+..+.+.+++.. +++++.|+.+++||+......... .+...+..++|++++
T Consensus 106 ~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccce-eeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999997664 6666778888999999998765 458999999999999866544322 234568899998764
Q ss_pred --CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCce
Q 009059 403 --GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 479 (545)
Q Consensus 403 --~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v 479 (545)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. .++..+.. ...+
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v 259 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDII 259 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceE
Confidence 4577888999999999999999999999999999999999999999999 999999999876 66666654 5689
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E---------eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~---------~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++.|+|++. +++++.|+.|++||++++..+ . ..+|...|++++|+|++++||+|+.||.|+|||
T Consensus 260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999876 667778999999999987665 2 236889999999999999999999999999996
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=333.50 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.7
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe------EEEEeccCCccEEEEEEcCC----C---CE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 319 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~------~~~~l~~h~~~V~~l~~sp~----~---~~ 319 (545)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|+|+ + ++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345678899999999999998 799999999999999999887 78888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEECCCCCe----eeeEeccC-----cccEEEEEEe----CCCCcEEEEEcCCCcEEEEECCC------
Q 009059 320 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 380 (545)
Q Consensus 320 l~t~s~dg~I~vwd~~~~~~----~~~~~~~h-----~~~V~~l~~~----p~~~~ll~s~s~dg~I~lwd~~~------ 380 (545)
|++++.||.|++||+.++.. .+..+..| ...|.+++|+ |++..++++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987652 15677778 5899999999 98766366899999999999998
Q ss_pred Cceee-----EEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---C---CCCEEEEEEc
Q 009059 381 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 441 (545)
Q Consensus 381 ~~~~~-----~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h---~~~I~~l~~s 441 (545)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66665 554 35679999999998 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CcEEEEEcCCCCCcceEEEEee-------------CCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 442 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 442 p~g~~l~s~s-d---g~I~vwd~~~~~~~~~i~~~~~-------------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++++|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999 8 89999999887 67778887 899999999999999999999999999999
Q ss_pred CCCCeEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEeCCCcEEEcC
Q 009059 505 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 545 (545)
Q Consensus 505 ~~~~~~~-~~~------~h---------------~~~V~~l~~spd~----------~~las~s~Dg~I~iWd 545 (545)
+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999888 666 67 9999999999998 7999999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=346.49 Aligned_cols=305 Identities=16% Similarity=0.204 Sum_probs=265.5
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CeEEEEeccCCccEEEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~----~~~~~~l~~h~~~V~~l~ 312 (545)
..|..+++|+..++.....+..+ .|...|++++|+|++++|++|+.|+.|+|||+.+ .+.+..+.+|...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 45778999999887543333333 5899999999999999999999999999999987 458888999999999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCC------ee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 313 FSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 313 ~sp~-~~~l~t~s~dg~I~vwd~~~~~------~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|+|+ +.+|++++.||.|++||+.+.. .. +..+..|...|.+++|+|++..++++++.||.|++||+++++.
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 9998 8999999999999999998765 21 2234679999999999999777888999999999999999999
Q ss_pred eeEEec-------cCCeeEEEEeCCC-CEEEEEECCC---eEEEEECCCC-EEEEEec-CCCCCEEEEEEcC-CCCEEEE
Q 009059 384 AGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVETQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLAS 449 (545)
Q Consensus 384 ~~~~~~-------~~~v~~l~~sp~~-~~l~~~~~dg---~I~i~d~~~~-~~~~~~~-~h~~~I~~l~~sp-~g~~l~s 449 (545)
+..+.. ...+.+++|+|++ ..+++++.++ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 888875 4679999999997 5788888888 9999999986 6667777 8999999999999 8999999
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC-CEEEEEEcCCeEEEEeCCCCeEE-Eec------------
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLS------------ 514 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~------------ 514 (545)
++ |+.|++||+.++ .++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+.... ...
T Consensus 281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 99 999999999887 7788888999999999999999 89999999999999999876532 110
Q ss_pred -----------------------cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 515 -----------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 515 -----------------------~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|...+.+++|+|+|++|++++.||.|+|||
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 1667888999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=320.04 Aligned_cols=264 Identities=18% Similarity=0.256 Sum_probs=242.3
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+.|..+++|++..+. ......+.+|...|.+++|++++.++++++.|+.|+|||+.+++.+..+..|...+.+++|+|+
T Consensus 55 s~D~~v~vW~~~~~~-~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd 133 (321)
T 3ow8_A 55 SLDDLVKVWKWRDER-LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133 (321)
T ss_dssp ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT
T ss_pred cCCCCEEEEECCCCC-eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC
Confidence 346778889887653 3345678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~ 395 (545)
+++|++++.||.|++|+++++.. ...+..|...|.+++|+|++. +|++|+.||.|++||+++++++..+.. ...+.+
T Consensus 134 g~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (321)
T 3ow8_A 134 SQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211 (321)
T ss_dssp SSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeE
Confidence 99999999999999999998775 677788999999999999975 555899999999999999999888874 457999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
++|+|++.+|++++.|+.|++||++++.....+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+..
T Consensus 212 l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~ 288 (321)
T 3ow8_A 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFD 288 (321)
T ss_dssp EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999 999999999887 88899999
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
|...|.+++|+|++.+|++++.|+.|++||..
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999963
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=341.29 Aligned_cols=295 Identities=26% Similarity=0.450 Sum_probs=262.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..+..+++|+... +.+..+.+|...|.+++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|+
T Consensus 240 ~~d~~i~~w~~~~----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~ 314 (577)
T 2ymu_A 240 SDDKTVKLWNRNG----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 314 (577)
T ss_dssp ETTSCEEEECTTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT
T ss_pred eCCCEEEEEeCCC----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC
Confidence 3567889998543 346778999999999999999999999999999999996 46778889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+++|++++.|+.|++||+... .+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++.+..+. +...+.+
T Consensus 315 ~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 315 GQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 390 (577)
T ss_dssp SSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEE
Confidence 999999999999999998753 3677889999999999999976 55588999999999964 55665555 4567999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ |+.|++||... ..+..+..
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~ 465 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTG 465 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcC
Confidence 999999999999999999999995 5677888899999999999999999999999 99999999642 57778889
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++||+++.||.|+|||
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 99999999999999999999999999999976554558889999999999999999999999999999997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=316.34 Aligned_cols=280 Identities=18% Similarity=0.254 Sum_probs=250.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE---EEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~---~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
..+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.||.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999998 999999999876533 2332 7999999999999999999999999999999
Q ss_pred CCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC
Q 009059 334 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 334 ~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
+.++.. ....+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+. +...+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 987653 3567788999999999999875 55588889999999999999888876 45679999999999999999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
+.|++||+++++.+..+. +...+.+++|+|++++|++++ ++.|++||+.+.. ...+..|...|.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999999888775 788999999999999999999 8999999998763 3466778999999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++.++.|++||+.+++.+....|...|.+++|+|++++|++++.||.|++||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=334.44 Aligned_cols=261 Identities=24% Similarity=0.466 Sum_probs=239.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++.. ...+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++
T Consensus 128 ~Dg~i~vwd~~~~~~---~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~ 204 (410)
T 1vyh_C 128 EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204 (410)
T ss_dssp SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcE---EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC
Confidence 467889999888753 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l 396 (545)
.+|++|+.|++|++||+.++.. +..+.+|...|.++.|+|++. ++++|+.|+.|++||+.++++...+. +...+.++
T Consensus 205 ~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 205 DHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 9999999999999999998764 888999999999999999975 66699999999999999999888775 44569999
Q ss_pred EEeCC--------------------CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 397 RFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 397 ~~sp~--------------------~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
+|+|+ +.++++++.|+.|++||++++.++..+.+|...|.+++|+|++++|++++ |+.|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 99996 56899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
++||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|++|+++
T Consensus 363 ~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999876 6778888999999999999999999999999999999863
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=350.94 Aligned_cols=285 Identities=21% Similarity=0.353 Sum_probs=244.0
Q ss_pred EEEEeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 254 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.....+++|.+.|++|+|+|+ +++|++|+.|++|+||++.+ +.....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 445678999999999999986 47999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----eccCCeeEEEEeCCC-
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQPRL- 402 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~~~~v~~l~~sp~~- 402 (545)
+|+|||+.++.. ...+.+|...|.+++|+|++..+ ++|+.|++|++||+......... .+...+.+++|+|++
T Consensus 453 ~v~vwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGVS-TRRFVGHTKDVLSVAFSLDNRQI-VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCcc-eeEEeCCCCCEEEEEEeCCCCEE-EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 999999998764 78889999999999999997655 49999999999998754433322 234559999999986
Q ss_pred -CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 403 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 403 -~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
..+++++.|+.|++||+++++....+.+|...|++++|+|++++|++++ |+.|++||+.++ .++..+. +...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~-~~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLE-ANSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCB-CSSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEec-CCCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999887 5565554 356799
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-------------------CCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
+++|+|++.+|++ +.++.|++||+.+++.+ .+..+ ...+++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 9999999986655 45677999999998876 33221 123789999999999999999999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|+||+
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=328.96 Aligned_cols=299 Identities=14% Similarity=0.203 Sum_probs=258.5
Q ss_pred cceeeeeec----CCcee---eEEEEeecC----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q 009059 239 DRVGRSAEV----GKGFT---FTEFQLIPA----------STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 301 (545)
Q Consensus 239 d~~~~~~~~----~~~~~---~~~~~~l~~----------H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l 301 (545)
|..+++|+. .++.. +.....+.. |.+.|++++|+|++++|++|+.||.|++|| .+++.+..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~ 145 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL 145 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec
Confidence 567788887 66651 112222333 788999999999999999999999999999 677888999
Q ss_pred ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc---------------EEEEEEeCCCCcEEEE
Q 009059 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---------------VMSLDFHPSKEDLLCS 366 (545)
Q Consensus 302 ~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~---------------V~~l~~~p~~~~ll~s 366 (545)
..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+... +.+++|++++ .+++
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 222 (425)
T 1r5m_A 146 NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVI 222 (425)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC---------------CCCBSCCEEEETT--EEEE
T ss_pred cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEE
Confidence 99999999999999999999999999999999998764 6777777766 9999999874 4568
Q ss_pred EcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 367 CDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
++.+|.|++||+.+++.+..+. +...+.+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus 223 ~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 301 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD- 301 (425)
T ss_dssp ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-
T ss_pred EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-
Confidence 8889999999999988887775 45679999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe---------------
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------- 509 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------- 509 (545)
+|++++ |+.|++||+.++ ..+..+..|...+.+++|+|++++|++++.++.|++||+.+++
T Consensus 302 ~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 888887 999999999877 7788888899999999999999999999999999999998877
Q ss_pred -----EE-EeccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 -----TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 -----~~-~~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 55 7778866 999999999999999999999999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=325.80 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=247.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 355699999999999999999999999999999999987 888899999999999999999999999999999999998
Q ss_pred CCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeEEe--ccCCeeEEEEeCCCCEEEEEE
Q 009059 336 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 336 ~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~~~--~~~~v~~l~~sp~~~~l~~~~ 409 (545)
++... ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+. +...+.+++|+|++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 76532 234467899999999999975 556888999999999988763 22222 356799999999999999999
Q ss_pred CCCeEEEEEC------------------CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 410 IENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 410 ~dg~I~i~d~------------------~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
.|+.|++||+ ..++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeE
Confidence 9999999995 46788889989999999999999999999999 999999999887 6788
Q ss_pred EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC--CeE--------------------------------------
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT-------------------------------------- 510 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~--~~~-------------------------------------- 510 (545)
.+..|...|.+++|+|++.+|+++ .|+.|++||+.+ ++.
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 888899999999999999877766 999999999987 431
Q ss_pred -EEe-ccCCCCeeEEEEe-CCC---CEEEEEeCCCcEEEcC
Q 009059 511 -LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 545 (545)
Q Consensus 511 -~~~-~~h~~~V~~l~~s-pd~---~~las~s~Dg~I~iWd 545 (545)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 318 ~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 318 GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=319.53 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=211.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE----eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~----l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
.|...|.+++|+|++ .|++|+.||.|+|||+++++.+.. +.+|.+.|++|+|+|++++|++|+.|++|++||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 788999999999999998875533 458999999999999999999999999999999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCC-CEEEEEECCC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~-~~l~~~~~dg 412 (545)
+.. +..+.+|...|.+++|++++..++++++.|+.|++||++++++...+.. ...+.+++|+|++ ..+++++.||
T Consensus 159 ~~~-~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVV-LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEE-EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CcE-EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 764 8899999999999999999988888999999999999999988877643 3358899999965 4667788999
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
.|++||+++++++..+.+|...|++++|+|++ ++|++++ |+.|+|||+.++ + +..+.+|...|++++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 3 3457889999999999999875
Q ss_pred -EEEEEcCCeEEEEeCCCCeE
Q 009059 491 -LLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 491 -l~~~~~dg~I~iwd~~~~~~ 510 (545)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999977543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=306.95 Aligned_cols=280 Identities=15% Similarity=0.235 Sum_probs=248.1
Q ss_pred eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE
Q 009059 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 331 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v 331 (545)
.+..+..+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeC-CCCEEEE
Q 009059 332 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 407 (545)
Q Consensus 332 wd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp-~~~~l~~ 407 (545)
|++.... ..+..+.+|...|.++.|. ..++++++.||.|++|| .++....+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788999999999994 34677999999999999 556665555 456799999988 8899999
Q ss_pred EECCCeEEEEECCCCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc
Q 009059 408 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s 485 (545)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 5566667776 899999999999999 66666 999999999887 7788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 486 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++ .|++++.|+.|++||+.+++.. .+..|...|.+++|+|+++ +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999887 7778999999999999998 66799999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=308.79 Aligned_cols=265 Identities=18% Similarity=0.287 Sum_probs=235.4
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus 33 ~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 109 (304)
T 2ynn_A 33 YSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK 109 (304)
T ss_dssp TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence 46789999998875 456778999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~ 395 (545)
++|++|+.|++|++||++++......+.+|...|.+++|+|.+..++++|+.|+.|++||+++......+. +...+..
T Consensus 110 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~ 189 (304)
T 2ynn_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (304)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEE
T ss_pred CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEE
Confidence 99999999999999999987666778899999999999999766788899999999999998877666554 2356888
Q ss_pred EEEeC--CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 396 MRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 396 l~~sp--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
+.|.| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||+.++ .++..+
T Consensus 190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~ 266 (304)
T 2ynn_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTL 266 (304)
T ss_dssp EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeec
Confidence 89887 667899999999999999999999999999999999999999999999999 999999999887 778888
Q ss_pred eeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC
Q 009059 473 SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 508 (545)
..+...+.+++|+|++. .+++++.++.+.+|++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred cCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 88999999999999885 3355556667888887653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=323.32 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=246.0
Q ss_pred EeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEecc-----CCccEEEEEEcCC----CCEEEEE
Q 009059 257 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 323 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~-----h~~~V~~l~~sp~----~~~l~t~ 323 (545)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345589999999999984 44566666678999999998877766653 5678999999998 6799999
Q ss_pred eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----eccCCeeEEEEe
Q 009059 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 399 (545)
Q Consensus 324 s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~~~~v~~l~~s 399 (545)
+.||.|++||+.+++. +..+.+|...|.+++|+|++..++++++.||.|++||+++++.+..+ .+...+.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998765 77888999999999999944567779999999999999999988887 366789999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEE----------------------------ecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~----------------------------~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|++..+++++.||.|++||+++++.... ...|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 9999999999999999999997654332 33499999999998 77999988
Q ss_pred -CCcEEEEEcCCCCC-----------cceEEEEeeCCCceEEEEEcCC--CCEEEEEEcCCeEEEEeCCCCeE-----EE
Q 009059 452 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 512 (545)
Q Consensus 452 -dg~I~vwd~~~~~~-----------~~~i~~~~~~~~~v~~~~~sp~--~~~l~~~~~dg~I~iwd~~~~~~-----~~ 512 (545)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987532 1347778889999999999999 99999999999999999998742 25
Q ss_pred eccC--CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 513 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ~~~h--~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=321.05 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=236.3
Q ss_pred eEEEEeecCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCeEEEEec--cCCccEEEEEEcC-CCCEEEEEeCCCe
Q 009059 253 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 328 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg-~~latg~~dg~I~lwd~~~~~~~~~l~--~h~~~V~~l~~sp-~~~~l~t~s~dg~ 328 (545)
+..+..+.+|.+.|++++|+|++ ++||+|+.|+.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34566789999999999999999 999999999999999999887776665 6999999999999 7899999999999
Q ss_pred EEEEECCCCCeeeeEecc---CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCC-
Q 009059 329 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 403 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~- 403 (545)
|++||+... .+..+.. |...|.+++|+|++. ++++++.|+.|++||++ ++.+..+. +...+.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999853 2455543 448899999999975 56689999999999995 56666665 566799999999988
Q ss_pred EEEEEECCCeEEEEECCC----CEEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe----
Q 009059 404 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 473 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~---- 473 (545)
.+++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6667666 5999999999999 999999999 9999999998875433222111
Q ss_pred eCC----------CceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc--CCCCeeEEEEeCCCCEEEEEeCCCc
Q 009059 474 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 540 (545)
Q Consensus 474 ~~~----------~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spd~~~las~s~Dg~ 540 (545)
.+. ..+..++|+|++++ +++.|+.|++||+.+++.+ .+.+ |...+..++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33444666666665 6678999999999999887 5555 567788889999999999997 999
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=316.97 Aligned_cols=287 Identities=16% Similarity=0.206 Sum_probs=241.7
Q ss_pred EeecCCCCCeEEEEEcCCCCEE-EEEeC---CCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCC---CCEEEEEeCCCe
Q 009059 257 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 328 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~l-atg~~---dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~---~~~l~t~s~dg~ 328 (545)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4567899999999999999655 56655 899999999988776443 379999999999998 699999999999
Q ss_pred EEEEECCCCCeeeeEeccCcccEEEEEE------eCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEecc-----CCeeEE
Q 009059 329 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ-----SGATQM 396 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~~h~~~V~~l~~------~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~~-----~~v~~l 396 (545)
|++||+.++...+..+.+|...|.+++| +|++. ++++++.||.|++||+++++ .+..+... ..+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877458889999999999965 56654 56699999999999999887 56666432 257888
Q ss_pred E----EeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCcce
Q 009059 397 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 397 ~----~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp---~g~~l~s~s-dg~I~vwd~~~~~~~~~ 468 (545)
. |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987554 45889999999999 899999999 99999999987644333
Q ss_pred EE--EEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC-------------------eEE-EeccCCCCeeEEEE
Q 009059 469 IH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN-------------------KTL-TLSAHDKLVSSLAA 525 (545)
Q Consensus 469 i~--~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~-------------------~~~-~~~~h~~~V~~l~~ 525 (545)
+. .+..|...|.+++|+|+++ +|++++.|+.|++||+..+ +.+ .+.+|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 22 4458899999999999998 8999999999999999753 223 67789999999999
Q ss_pred eCCCCEEE-EEeCCCcEEEcC
Q 009059 526 STVNGMVA-SASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~la-s~s~Dg~I~iWd 545 (545)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=323.68 Aligned_cols=294 Identities=16% Similarity=0.242 Sum_probs=247.7
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCe------EEEEecc------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE------ 303 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~----~~~~------~~~~l~~------ 303 (545)
...+|++.... .......|.+.|++++|+|+++ +||+|+.|+.|+||++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 1r5m_A 26 IDSSDDLDGFV---KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA 102 (425)
T ss_dssp --------CCC---EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred ccccccchhhh---hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence 34556554432 1223345679999999999999 9999999999999999 8887 4555544
Q ss_pred ----CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 304 ----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 304 ----h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
|...|++++|+|++++|++++.||.|++||. ++. .+..+..|...|.+++|+|++.. +++++.|+.|++||+.
T Consensus 103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVI 179 (425)
T ss_dssp -----CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETT
T ss_pred cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECC
Confidence 6889999999999999999999999999994 344 47888899999999999999764 5588889999999999
Q ss_pred CCceeeEEeccCC----------------eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 380 NGSCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 380 ~~~~~~~~~~~~~----------------v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
+++.+..+..... +.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 9998887765443 888999998 77999999999999999999888889999999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCee
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 521 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~ 521 (545)
+++|++++ |+.|++||+.++ ..+..+..|...|.+++|+|++ .+++++.++.|++||+.+++.+ .+..|...|.
T Consensus 259 ~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 259 NKLLLSASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp TTEEEEEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 99999999 999999999876 5566777889999999999999 9999999999999999999888 6778999999
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 522 SLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++|+|++++|++++.||.|+|||
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEE
Confidence 999999999999999999999996
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=329.41 Aligned_cols=284 Identities=14% Similarity=0.237 Sum_probs=236.7
Q ss_pred EEEee-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---Ce---EEEEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 255 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 255 ~~~~l-~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~---~~---~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+..+ .+|.+.|++++|+| ++++||+|+.||.|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 45667 89999999999999 999999999999999999876 33 23333 599999999999999999999999
Q ss_pred CeEEEEECC---CCCeeeeEecc------------CcccEEEEE--EeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 327 RTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 327 g~I~vwd~~---~~~~~~~~~~~------------h~~~V~~l~--~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|.|++||++ .+.. ...+.. +...+.++. +++++ .++++++.|+.|++||+++++++..+..
T Consensus 133 g~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 133 GQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp SEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 999999995 3332 222221 445566666 44564 5677999999999999999999988874
Q ss_pred ---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcC----CCCEEEEEe-CCcEEEEEc
Q 009059 390 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI 460 (545)
Q Consensus 390 ---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp----~g~~l~s~s-dg~I~vwd~ 460 (545)
...+.+++|+|++.++++++.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++++ |+.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 5789999999999999999999999999999999999886 7888999996664 677999999 899999999
Q ss_pred CCCCCcceEEEEee--------------------------CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee
Q 009059 461 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL 513 (545)
Q Consensus 461 ~~~~~~~~i~~~~~--------------------------~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~ 513 (545)
+++ .++..+.. |...|.+++|+ ++++|++++.|+.|++||+.+++.. .+
T Consensus 291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV 366 (437)
T ss_dssp TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence 887 55555553 44568889999 7789999999999999999887754 33
Q ss_pred cc-------------------------------------CCCCeeEEEEeCC--CCEEEEEeCCCcEEEcC
Q 009059 514 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~-------------------------------------h~~~V~~l~~spd--~~~las~s~Dg~I~iWd 545 (545)
.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 32 8999999999998 77999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=322.19 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=249.9
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
|..+++|+..++.. ...+..| ..+....|++++++||+|+.|+.|+|||+.+++....+.+|...|++++|+|+++
T Consensus 77 d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 152 (420)
T 3vl1_A 77 DGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE 152 (420)
T ss_dssp TTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred CCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence 56788888776543 2334455 4455557899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec----cCCee
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGAT 394 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~----~~~v~ 394 (545)
+|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.
T Consensus 153 ~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 153 ALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp EEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred EEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 999999999999999998765 788889999999999999975 555999999999999999998888763 22344
Q ss_pred ---------------------EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCC-EEEEEe
Q 009059 395 ---------------------QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS 451 (545)
Q Consensus 395 ---------------------~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~-~l~s~s 451 (545)
+++|+|++..+++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence 44557888899999999999999999988777665 4888999999999998 999998
Q ss_pred -CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC----------eEEEeccCCCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------KTLTLSAHDKL 519 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~~~~~h~~~ 519 (545)
|+.|++||++++.. .+..+.. +...+.++.+ +++.+|++++.|+.|++||+... ....+..|...
T Consensus 311 ~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 311 ENGMLAQWDLRSPEC--PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp TTSEEEEEETTCTTS--CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred CCCeEEEEEcCCCcC--chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 99999999988642 3455555 5666777755 57789999999999999998762 23356688999
Q ss_pred eeEEEEeCCCC---EEEEEeCCCcEEEcC
Q 009059 520 VSSLAASTVNG---MVASASHDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~---~las~s~Dg~I~iWd 545 (545)
|.+++|+|++. .|++++.+|.+.+|+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred eEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 99999999999 788888899999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=303.38 Aligned_cols=266 Identities=17% Similarity=0.276 Sum_probs=232.9
Q ss_pred cccceeeeeecCCc--eeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 237 PRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~--~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
+.|..+++|+.... .....+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+
T Consensus 37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~ 116 (319)
T 3frx_A 37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116 (319)
T ss_dssp ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence 45678888887543 2234578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC-----CcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-----~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
|++.+|++|+.|++|++||+.. . .+..+.+|...|.++.|.|.. ..++++++.|+.|++||+++.+....+.
T Consensus 117 ~~~~~l~s~s~D~~i~vwd~~~-~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 194 (319)
T 3frx_A 117 KKASMIISGSRDKTIKVWTIKG-Q-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194 (319)
T ss_dssp TTSCEEEEEETTSCEEEEETTS-C-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCC-C-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence 9999999999999999999974 3 477888999999999999863 2367799999999999999988877765
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 468 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~ 468 (545)
+...+.+++|+|++.+|++++.||.|++||+++++.+..+.. ...|.+++|+|++.+|+++.++.+++|++... ..
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~ 270 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YL 270 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTE---EE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---ee
Confidence 456799999999999999999999999999999999988875 46899999999999999999888999999765 44
Q ss_pred EEEEe--------eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 469 IHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 469 i~~~~--------~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+..+. .+...+.+++|+|++++|++++.|+.|++||+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 44443 23567899999999999999999999999998654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=307.18 Aligned_cols=258 Identities=23% Similarity=0.345 Sum_probs=231.1
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h~~~V~~l~~ 313 (545)
.|..+++|+..++.. +..+..|...|.+++|+|++++||+|+.|+.|++|++.+. +....+.+|...|.++.|
T Consensus 75 ~Dg~v~iWd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 75 QDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp TTTEEEEEETTTCCE---EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred CCCcEEEEECCCCCc---ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence 467889999887754 5567889999999999999999999999999999999865 456778899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
++++. |++++.|++|++||+.++.. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.+...+. +...
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~ 228 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESD 228 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred CCCCc-EEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCC
Confidence 98764 89999999999999998764 788999999999999999865 66699999999999999999888886 4557
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
+.+++|+|++..|++++.|+.|++||++++..+..+.. +...|.+++|+|++++|++++ |+.|++||+.++ ..+
T Consensus 229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~ 305 (340)
T 1got_B 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRA 305 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEE
T ss_pred EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEe
Confidence 99999999999999999999999999999988777653 335799999999999999999 999999999876 677
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88899999999999999999999999999999997
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=327.68 Aligned_cols=285 Identities=15% Similarity=0.192 Sum_probs=230.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 258 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7888899999999999999999999999999999999998
Q ss_pred CCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc---eeeEEe--ccCCeeEEEEeCCCCEEEEE
Q 009059 336 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 336 ~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---~~~~~~--~~~~v~~l~~sp~~~~l~~~ 408 (545)
++. .....+.+|...|.+++|+|++.. |++++.|+.|++||+++++ +...+. +...+.+++|+|++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 765 235677789999999999998765 4588899999999999877 355555 56779999999999999999
Q ss_pred ECCCeEEEEECC------------------CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc-ce
Q 009059 409 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 468 (545)
Q Consensus 409 ~~dg~I~i~d~~------------------~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~-~~ 468 (545)
+.|+.|++||++ .++.+..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566677 8999999999999999999999 999999999987431 12
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe---------------------------------------
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 509 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------------------------------------- 509 (545)
+..+..|...|.+++|+|++++|++++.++. .+|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 6677889999999999999998877765554 477665221
Q ss_pred EE-E-------------eccCCCCeeEEEEeCCC-C---EEEEEeCCCcEEEcC
Q 009059 510 TL-T-------------LSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~-~-------------~~~h~~~V~~l~~spd~-~---~las~s~Dg~I~iWd 545 (545)
.. . ...|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 0 01299999999976544 3 699999999999997
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=335.50 Aligned_cols=305 Identities=9% Similarity=0.046 Sum_probs=236.8
Q ss_pred CcccceeeeeecCCcee-eEEEEeecCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCeE-----------
Q 009059 236 DPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESFTV----------- 297 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~-~~~~~~l~~H~~~V~~l~~spd------g~~latg~~dg~I~lwd~~~~~~----------- 297 (545)
.+.|..+++|+...+.. ......+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 45788999999877642 2234557789999999999997 57999999999999999976532
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE--EEeCCCCcEEEEEcCCCcEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l--~~~p~~~~ll~s~s~dg~I~l 375 (545)
...+.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.++ +|+|++..+|++|+.|++|++
T Consensus 259 ~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 2467889999999999986 4899999999999999997765566788999999999 567775478889999999999
Q ss_pred EECCCCceeeEEeccC---CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 376 WSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 376 wd~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
||++++++...+..+. .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++++|+|+|.+|++|+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC
Confidence 9999888776665332 478999999999999999999999999999988888889999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC--CCeEEEeccCCCCeeEEEEeC
Q 009059 452 DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT--ENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~--~~~~~~~~~h~~~V~~l~~sp 527 (545)
|++|++||+..... ...... ..+...+..++|+|++..+ .. ++.+.+|+.. ......+.+|...|.+++|+|
T Consensus 418 Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 418 DGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EE--CCCCCCCC-------------CCCSCCCEEECC
T ss_pred CCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-Ec--cCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 99999999865311 110000 0112257899999999844 22 2223344332 333447889999999999999
Q ss_pred CCC---EEEEEeCCCcEEEcC
Q 009059 528 VNG---MVASASHDKCVKIWK 545 (545)
Q Consensus 528 d~~---~las~s~Dg~I~iWd 545 (545)
++. +||+|+.||.|+||+
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEE
T ss_pred CCCccHHHHhhccCceEEEEE
Confidence 964 999999999999995
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=324.48 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=243.4
Q ss_pred CeEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 265 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg----------~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
.|.+++|+|+++ +||+| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|++++|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 488899999987 99999 889999999998875 33333 5889999999999999999999999999
Q ss_pred EEECCC---CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc------eeeEE----eccCCeeEEE
Q 009059 331 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQMR 397 (545)
Q Consensus 331 vwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~------~~~~~----~~~~~v~~l~ 397 (545)
+||+.. +...+..+.+|...|.+++|+|++..++++++.|+.|++||+.+++ ....+ .+...+.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 2335788889999999999999855677799999999999999876 33322 3556799999
Q ss_pred EeCC-CCEEEEEECCCeEEEEECCCCEEEEEecCC------CCCEEEEEEcCCC-CEEEEEe-CC---cEEEEEcCCCCC
Q 009059 398 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK 465 (545)
Q Consensus 398 ~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h------~~~I~~l~~sp~g-~~l~s~s-dg---~I~vwd~~~~~~ 465 (545)
|+|+ +..+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++ |+ .|++||++++.
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~- 251 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN- 251 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence 9998 678888899999999999999999988876 7899999999997 6888888 77 99999998753
Q ss_pred cceEEEEe-eCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCC-CEEEEEeCCCcE
Q 009059 466 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV 541 (545)
Q Consensus 466 ~~~i~~~~-~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~-~~las~s~Dg~I 541 (545)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus 252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3344566 7889999999999 9999999999999999999999887 778999999999999999 899999999999
Q ss_pred EEcC
Q 009059 542 KIWK 545 (545)
Q Consensus 542 ~iWd 545 (545)
+|||
T Consensus 331 ~iw~ 334 (416)
T 2pm9_A 331 EVQT 334 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=314.22 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=217.7
Q ss_pred ccceeeeeecCCceeeE-EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE----EeccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFT-EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~-~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~----~l~~h~~~V~~l~ 312 (545)
+|..+++|+..++.... ......+|...|++++|+|++++| +++.||.|+|||+.+++... ...+|...|++++
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 35678888877664332 234456799999999999998654 57789999999998876543 3458999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---c
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C 389 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~ 389 (545)
|+|++++|++|+.|+.|++||+.++.. +..+.+|...|.+++|++++..++++++.||.|++||++++++...+. .
T Consensus 147 ~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 225 (357)
T 4g56_B 147 VFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS 225 (357)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence 999999999999999999999998764 888999999999999999988788899999999999999988776554 3
Q ss_pred cCCeeEEEEeCCCC-EEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCc
Q 009059 390 QSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 390 ~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
...+.+++|+|+++ .+++++.|+.|++||+++++.+..+.+|...|++++|+|++ ++|++++ |+.|+|||+.++
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~--- 302 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS--- 302 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---
Confidence 34589999999754 67778899999999999999999999999999999999987 6788888 999999999876
Q ss_pred ceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCC
Q 009059 467 ECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+++.. ..|...|++++|+| ++.+|++++.|+.|++||+...
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 45544 47999999999998 7899999999999999999654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=315.10 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=245.7
Q ss_pred EEEEeecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 254 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 254 ~~~~~l~~H~~~V-~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
.....+.+|.+.| .|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEECCCCceee-----------------------EEe
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 388 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd~~~~~~~~-----------------------~~~ 388 (545)
|+.++.. +..+.+|...|.+++|++. ...++++++.||.|++||+.++.... .+.
T Consensus 189 d~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGCC-THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTEE-EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCcE-EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9998764 8889999999999999952 24677799999999999998776432 121
Q ss_pred -ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 389 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 389 -~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
+...+.+ +++++..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 2223444 467789999999999999999999999999999999999999999999999999 999999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++..+..|...|.++.|+ +.+|++++.|+.|++||+.+........|...+..++|++++++|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999997 5789999999999999999988775556888899999999999999998 89999996
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=315.03 Aligned_cols=279 Identities=13% Similarity=0.089 Sum_probs=226.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCeE----------EEEeccCCccEEEEEEcCCCCEEEEEe--
Q 009059 264 SKVESCHFSPDGKLLATGGHD-------KKAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS-- 324 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~d-------g~I~lwd~~~~~~----------~~~l~~h~~~V~~l~~sp~~~~l~t~s-- 324 (545)
-+|+|++|+||+++||+|+.+ +.|+||++..... ...+..|...|.++++. +..+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 479999999999999999754 3599999875421 23567888899988875 45666653
Q ss_pred ---------CCCeEEEEECCCCCeeeeE--------eccCcccEEEEEEeCCCCcEE-EEEcCCCcEEEEECCCCceeeE
Q 009059 325 ---------ADRTVRVWDTENPDYSLRT--------FTGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 325 ---------~dg~I~vwd~~~~~~~~~~--------~~~h~~~V~~l~~~p~~~~ll-~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
.|+.|++|++......+.. ...+...+.+++|+|+|..++ ++++.|++|++||+.+++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 4778999998765432221 123455689999999998764 4566899999999999999999
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 459 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd 459 (545)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+. ....|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99889999999999988877776 5567777777765543 3456888999999999999999988 65 688898
Q ss_pred cCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-E-eccCCCCeeEEEEeCCCCEEEEEe
Q 009059 460 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 460 ~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~-~~~h~~~V~~l~~spd~~~las~s 536 (545)
+..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+||+++||+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999988 4 468999999999999999999999
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=324.95 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=224.6
Q ss_pred EeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 009059 257 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 332 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vw 332 (545)
....+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 677999999999999999987654 445678999999999998 68899999999999999
Q ss_pred ECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC-EEEEEE
Q 009059 333 DTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAA 409 (545)
Q Consensus 333 d~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~ 409 (545)
|++.... ..... .+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .+++++
T Consensus 193 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 193 DFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp ETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9986532 22222 2345678999999975 56699999999999997544333334567799999999876 566788
Q ss_pred CCCeEEEEECCCCEEEE---EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC------ce
Q 009059 410 IENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------KF 479 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~---~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~------~v 479 (545)
.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|.. .+
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSCC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEeccccccccccee
Confidence 99999999998765432 3356999999999999999999999 999999999887 44444443332 23
Q ss_pred EEEEEcCCCCEEEEEEc------------CCeEEEEeCCCCeEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEc
Q 009059 480 HSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~------------dg~I~iwd~~~~~~~-~~-~~h~~~V~~l-~~spd~~~las~s~Dg~I~iW 544 (545)
..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|++.+||+|+ |+.|+||
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 45677777777766643 247999999999887 43 4788889887 6999999999876 8899999
Q ss_pred C
Q 009059 545 K 545 (545)
Q Consensus 545 d 545 (545)
|
T Consensus 427 ~ 427 (435)
T 4e54_B 427 S 427 (435)
T ss_dssp C
T ss_pred E
Confidence 7
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=303.63 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=222.1
Q ss_pred cccceeeeeecCCce----eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE
Q 009059 237 PRDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 312 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~----~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~ 312 (545)
+.|..+++|+...+. .......+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~ 125 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEE
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 346677888876542 2345678899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCCCC---------cEEEEEcCCCcEEEEECCC
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~---------~ll~s~s~dg~I~lwd~~~ 380 (545)
|+|++++|++++.|++|++||+... . .... .+|...|.+++|+|++. .++++++.|+.|++||..
T Consensus 126 ~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~- 202 (343)
T 2xzm_R 126 FSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN- 202 (343)
T ss_dssp ECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-
T ss_pred ECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-
Confidence 9999999999999999999999743 2 2222 37889999999999863 467799999999999954
Q ss_pred CceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEE
Q 009059 381 GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458 (545)
Q Consensus 381 ~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vw 458 (545)
......+. +...+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.+++|+|++.+++++.|+.|++|
T Consensus 203 ~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw 281 (343)
T 2xzm_R 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIF 281 (343)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEE
T ss_pred CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEE
Confidence 55555554 556799999999999999999999999999954 33333443 5567999999999999988889999999
Q ss_pred EcCCCCCcceEEEEe-----------eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 459 SIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 459 d~~~~~~~~~i~~~~-----------~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
|+.+..... +..+. +|...|.+++|+|++++|++++.|+.|++|++.++
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 282 NLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 998764322 22332 56788999999999999999999999999998654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=302.19 Aligned_cols=273 Identities=22% Similarity=0.350 Sum_probs=225.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--eEEEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~--~~~~~l~~h~~~V~~l~~sp 315 (545)
.|..+++|+...+..........+|.+.|.+++|+|++++||+|+.|+.|+||++..+ +.+..+.+|...|.+++|+|
T Consensus 36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp 115 (345)
T 3fm0_A 36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence 4677899988877544444556799999999999999999999999999999998876 45788899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee--eEEe-cc
Q 009059 316 SLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQ 390 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~--~~~~-~~ 390 (545)
++++|++|+.|++|++||+.+.. ..+..+.+|...|.+++|+|++. +|++++.|+.|++||++++... ..+. +.
T Consensus 116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~ 194 (345)
T 3fm0_A 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHE 194 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCC
Confidence 99999999999999999998654 23567889999999999999976 5559999999999999887543 3443 45
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCC---------------CEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CC
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~---------------~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg 453 (545)
..|.+++|+|++.+|++++.|+.|++||... ..++..+.+ |...|.+++|+|++.+|++++ |+
T Consensus 195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 6799999999999999999999999999632 234555655 889999999999999999998 99
Q ss_pred cEEEEEcCCCCCc-c-----eEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeEE
Q 009059 454 LVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 454 ~I~vwd~~~~~~~-~-----~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.|++|+....... . .......|...|.+++|+|++. +|++++.|+.|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 9999998764321 1 1222357889999999999984 8999999999999999887765
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=298.17 Aligned_cols=252 Identities=19% Similarity=0.283 Sum_probs=212.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~v 331 (545)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|.+.|++++|++ ++++|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 356789999999999999999999999999999999974 467789999999999999986 3899999999999999
Q ss_pred EECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCce--eeEE-eccCCeeEEEEeCC-----
Q 009059 332 WDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR----- 401 (545)
Q Consensus 332 wd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~--~~~~-~~~~~v~~l~~sp~----- 401 (545)
||+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998764 2356778899999999999972 35677999999999999987632 2223 35567999999996
Q ss_pred --------CCEEEEEECCCeEEEEECCCCE----EEEEecCCCCCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCC
Q 009059 402 --------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 402 --------~~~l~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+.....
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 4689999999999999998754 667889999999999999985 8899998 99999999987532
Q ss_pred cceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 GECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 ~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
......+ ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1222233 45678899999999999999999999999999763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=302.37 Aligned_cols=278 Identities=17% Similarity=0.241 Sum_probs=242.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
|.+.|.+++|+|||++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 445689999999999999998888887777666555555568999999999999999999998 99999999987543
Q ss_pred eeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc--eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 340 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 340 ~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~--~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
.+..+. +|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 123333 7899999999999975 55588889999999999887 344443 34569999999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+ .+...+.+++|+|++++|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeee-cCCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999886 555554 36788999999999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999888899999999999999999999999999999996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=305.98 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=242.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 330 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~ 330 (545)
.+....+|.+.|++++|+|++++|++++.|+.|+||++.+++ ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999998876 3455568999999999999999 999999999999
Q ss_pred EEEC-CCCCeeeeEecc--CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC---------CceeeEEeccCCeeEEEE
Q 009059 331 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRF 398 (545)
Q Consensus 331 vwd~-~~~~~~~~~~~~--h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~---------~~~~~~~~~~~~v~~l~~ 398 (545)
+||+ .++. ...+.+ |...|.+++|+| + .++++++.|+.|++||+++ ++++..+.+...+.+++|
T Consensus 83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 9999 7664 477788 999999999999 4 5666999999999999988 777777777888999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CE--EEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCC---CcceEE
Q 009059 399 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH 470 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~---~~~~i~ 470 (545)
++++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... ......
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9985 99999999999999998 43 3445556889999999999 999999999 9999999998751 014455
Q ss_pred EEeeCCC---------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC-CCCeeEEEEeCCCCEEEEEeCCC
Q 009059 471 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 471 ~~~~~~~---------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+| ...|.+++ |++++|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 6666654 9999999999999999999999999999999887 77788 99999999 9999999999999
Q ss_pred c
Q 009059 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=302.14 Aligned_cols=261 Identities=21% Similarity=0.335 Sum_probs=231.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------eEEEEeccCCccEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITD 310 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~------~~~~~l~~h~~~V~~ 310 (545)
+.|..+++|+..++.. ...+..|...|.+++|+|+|.+||+|+.|+.+++|++... .....+.+|...|.+
T Consensus 83 s~Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 159 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159 (354)
T ss_dssp ETTSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred eCCCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEE
Confidence 3467889999877654 4556789999999999999999999999999999998643 345667789999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 311 l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
++|+|++..|++++.|++|++||+++++. +..+.+|...|.+++|+|+. ..++++|+.||.|++||+++++++..+.
T Consensus 160 ~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~ 238 (354)
T 2pbi_B 160 CSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET 238 (354)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 99999999999999999999999998775 88899999999999998853 3577799999999999999999988886
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
+...|.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++.+|++++ |+.|++||+.++
T Consensus 239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-- 316 (354)
T 2pbi_B 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-- 316 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--
T ss_pred CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC--
Confidence 4567999999999999999999999999999998877766543 35789999999999999999 999999999877
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
..+..+.+|...|.+++|+|++.+|++++.|+.|++|+
T Consensus 317 -~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 -SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 67788889999999999999999999999999999996
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=304.35 Aligned_cols=288 Identities=17% Similarity=0.266 Sum_probs=243.8
Q ss_pred eeEEEEeecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-CeEE-EEeccCCccEEEEEEcCCCCEEEEEeCC
Q 009059 252 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 326 (545)
Q Consensus 252 ~~~~~~~l~~H~~~V~~l~~spd---g~~latg~~dg~I~lwd~~~-~~~~-~~l~~h~~~V~~l~~sp~~~~l~t~s~d 326 (545)
.+..+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 34457788999999999999999 69999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEE--eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~--~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~ 404 (545)
|.|++||+.++.. ..+..|...|.+++| ++++ .++++++.||.|++||+++++++..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 9999999997663 346679999999999 7775 466699999999999999999999999888777777775 58
Q ss_pred EEEEECCCeEEEEECCCCEEEEEe--cCCCCCEEEEEEcCCCCE----EEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 405 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~I~~l~~sp~g~~----l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+++++.++.+.+|+++........ ..+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 899999999999999976544332 224456677777665543 77777 99999999988654345556666654
Q ss_pred ------------ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 478 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 478 ------------~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.+++|+|++++|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 777899999999999999999999999865544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=310.26 Aligned_cols=302 Identities=19% Similarity=0.344 Sum_probs=245.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEe-------------ccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l-------------~~h 304 (545)
+..+++|+...+. ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+ .+|
T Consensus 22 ~~~~~v~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 22 ESTRRVLGLELNK---DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHTEEECT---TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cCcceeeccccCc---ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3456777765544 3466788999999999999 9999999999999999999887655443 259
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC--cEEEEEcCCCcEEEEECCCC
Q 009059 305 TQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 305 ~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~--~ll~s~s~dg~I~lwd~~~~ 381 (545)
...|.+++|+| ++.+|++++.||.|++||+.++.. ...+. +...+.++.|.+.+. .++++++.|+.|++||++++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 99999999999 788999999999999999998664 45544 778899999998643 37779999999999999999
Q ss_pred ceeeEEe-ccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCCCE-EEEEe---------------cCCCCCEEEEEEcCC
Q 009059 382 SCAGVFK-CQSGATQMRFQPRLGR-ILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTS 443 (545)
Q Consensus 382 ~~~~~~~-~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~~~-~~~~~---------------~~h~~~I~~l~~sp~ 443 (545)
+.+..+. +...+.+++|+|++.+ +++++.||.|++||++++. .+..+ ..|...|.+++|+|+
T Consensus 177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 8888876 4567999999999885 7889999999999998764 33444 568899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEE--eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCC
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL 519 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~--~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~ 519 (545)
+.+|++++ |+.|++||+.++......... ......+...........+++++.++.|++||+.+++.+ .+.+|...
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 336 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence 99999999 999999999887432111100 011112222233344556888889999999999999888 77889999
Q ss_pred eeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 520 VSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++|+|++++|++++.||.|+|||
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 99999999999999999999999996
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=305.25 Aligned_cols=277 Identities=19% Similarity=0.360 Sum_probs=239.8
Q ss_pred ecCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 259 IPASTSK--VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 259 l~~H~~~--V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
..+|... +.+++|++ ..+++++.|+.|+|||+.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 4466655 44466664 5678888999999999999998877765 88999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++. +..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...+.+++|+|++..+++++.|+.
T Consensus 165 ~~~~-~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 SQTK-LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TCCE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeE-EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 8765 788889999999999963 477799999999999998 455555554 5567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEe---CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g-~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
|++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...+.+++|+|+++
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999976 5666654 899999999887 5566664 567899999999999
Q ss_pred EEEEEE--cCCeEEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~--~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++++ .++.|++||+.+++.. .+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 999965 7999999999987655 4668999999999999999999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=335.92 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=154.6
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
|..+++|+...+... ....|...|.+++|+| |++||+++.|+.|+|||+.+++.+..+. |...|++++|+|+++
T Consensus 38 Dg~I~lw~~~~~~~~----~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~ 111 (902)
T 2oaj_A 38 TGEVHIYGQQQVEVV----IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD 111 (902)
T ss_dssp TSEEEEECSTTCEEE----EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred CCEEEEEeCCCcEEE----EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence 467788877655422 2235888999999999 8899999999999999999999888886 778999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeee----------eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 319 RLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~----------~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+|++|+.||.|++||+.++.... ..+.+|.+.|.+++|+|++..++++|+.||.| +||+++++++..+.
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~ 190 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI 190 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence 99999999999999998765311 23467899999999999866778899999999 99999999888776
Q ss_pred cc-------------------CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE
Q 009059 389 CQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 426 (545)
Q Consensus 389 ~~-------------------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~ 426 (545)
.+ ..|.+++|+|++.+|++++.||.|++||+++++++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 54 569999999999999999999999999998776543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=305.07 Aligned_cols=289 Identities=20% Similarity=0.354 Sum_probs=256.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
..|..+++|+..++. .+..+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 136 ~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 136 SDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp ETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred ECCCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 346788999988875 456788999999999998 5699999999999999999999999999999999999995
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+.+|++|+.||.|++||+.+++. +..+.+|...|.++.| ++ .++++++.||.|++||+++++++..+. +...+.+
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 56899999999999999998765 7888899999999999 34 456689999999999999999988886 4456889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
+.| ++..+++++.|+.|++||+++++.+..+.+|...+.++.++ +.+|++++ |+.|++||++++ .++..+..
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~ 357 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQG 357 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECS
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEcc
Confidence 988 67899999999999999999999999999999999998874 67888888 999999999887 66777765
Q ss_pred ---CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee-----ccCCCCeeEEEEeCCCCEEEEEeCCCc----E
Q 009059 475 ---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTVNGMVASASHDKC----V 541 (545)
Q Consensus 475 ---~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~spd~~~las~s~Dg~----I 541 (545)
|...|.+++|+ +.+|++++.|+.|++||+.+++.+ .+ ..|.+.|++++|+|++.+|++|+.||+ |
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 78889999996 578999999999999999999887 44 378899999999999999999999998 9
Q ss_pred EEcC
Q 009059 542 KIWK 545 (545)
Q Consensus 542 ~iWd 545 (545)
.|||
T Consensus 436 ~v~d 439 (445)
T 2ovr_B 436 LVLD 439 (445)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=301.25 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=219.0
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----eEEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 330 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~----~~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~ 330 (545)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999876 56777889999999999999 699999999999999
Q ss_pred EEECCCCC--------eeeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe------------
Q 009059 331 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 388 (545)
Q Consensus 331 vwd~~~~~--------~~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------------ 388 (545)
+||+..+. ..+..+..|...|.+++|+|+ +. ++++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998763 346778899999999999998 54 56688999999999999887654432
Q ss_pred --ccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCCCEE--EEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEE
Q 009059 389 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 456 (545)
Q Consensus 389 --~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~ 456 (545)
+...+.++.|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|.+++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999999998887764 77788899999999999998 7899998 99999
Q ss_pred EEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc----CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCE
Q 009059 457 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 531 (545)
Q Consensus 457 vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~ 531 (545)
+||++.+.. ..........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 999987532 2222222233333344444433333332 335556665555555 67789999999999999999
Q ss_pred EEEEeCCCcEEEcC
Q 009059 532 VASASHDKCVKIWK 545 (545)
Q Consensus 532 las~s~Dg~I~iWd 545 (545)
|++++.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=303.63 Aligned_cols=262 Identities=22% Similarity=0.369 Sum_probs=224.5
Q ss_pred cceeeeeecCCceeeEEEEeecCC------------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPAS------------------TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 300 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H------------------~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~ 300 (545)
+..+++|+..++..... +..| ...|++++|+|+|++||+|+.|+.|+|||+.+++.+..
T Consensus 84 ~~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~ 160 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 160 (393)
T ss_dssp BSCEEEEETTTCCEEEE---ECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 34677888877754332 3333 23499999999999999999999999999999999999
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...+.+++|+|....++++|+.|+.|++||+++
T Consensus 161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999999999999999999999999999998764 44444 5678999999995456777999999999999999
Q ss_pred CceeeEEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC------------EEEEEecCCCCCEEEEEE
Q 009059 381 GSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCW 440 (545)
Q Consensus 381 ~~~~~~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~------------~~~~~~~~h~~~I~~l~~ 440 (545)
+..+..+. +...+.+++|+|++..|++++.|+.|++||+++. .+...+.+|...|.+++|
T Consensus 239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 318 (393)
T 1erj_A 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318 (393)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence 98877652 4457999999999999999999999999999753 345677889999999999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC------CCCEEEEEEcCCeEEEEeCCCC
Q 009059 441 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 441 sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp------~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+|++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+.|+||++...
T Consensus 319 ~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 319 TQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 99999999999 999999999887 67888899999999999986 6789999999999999997543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=319.28 Aligned_cols=294 Identities=16% Similarity=0.279 Sum_probs=244.6
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSP 315 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp 315 (545)
..+.+|+ .+. .+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|
T Consensus 142 ~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 216 (615)
T 1pgu_A 142 GVFISWD--SGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216 (615)
T ss_dssp EEEEETT--TCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred cEEEEEE--CCC---cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence 4556665 333 4677889999999999999998 899999999999999999999999999999 999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCCeeeeEe-c---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 316 S-LSRLATSSADRTVRVWDTENPDYSLRTF-T---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 316 ~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~-~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
+ +++|++++.||.|++||+.+++. +..+ . .|...|.+++|+ ++ .++++++.|+.|++||+++++.+..+...
T Consensus 217 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 217 DSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9 99999999999999999998775 6666 5 899999999999 65 56668889999999999987765544432
Q ss_pred -----CC-------------------------------------------------------------------------
Q 009059 391 -----SG------------------------------------------------------------------------- 392 (545)
Q Consensus 391 -----~~------------------------------------------------------------------------- 392 (545)
..
T Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence 11
Q ss_pred -eeEEEEe----------------------------------CC------------------------------------
Q 009059 393 -ATQMRFQ----------------------------------PR------------------------------------ 401 (545)
Q Consensus 393 -v~~l~~s----------------------------------p~------------------------------------ 401 (545)
+.+++|. |+
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 453 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence 1112220 00
Q ss_pred --CCEEEEEEC-CCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-C
Q 009059 402 --LGRILAAAI-ENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-T 475 (545)
Q Consensus 402 --~~~l~~~~~-dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~ 475 (545)
+..+++++. |+.|++||+.++... ..+.+|...|.+++|+|++++|++++ |+.|++||+.++ ..+..+.. |
T Consensus 454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h 530 (615)
T 1pgu_A 454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFR 530 (615)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCC
T ss_pred EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCC
Confidence 334444555 666666666665444 55667899999999999999999999 999999999887 67777777 9
Q ss_pred CCceEEEEEcC----------CCCEEEEEEcCCeEEEEeCCCC-eEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 476 GNKFHSCVFHP----------TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 476 ~~~v~~~~~sp----------~~~~l~~~~~dg~I~iwd~~~~-~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
...|.+++|+| ++++|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|+++ |++++.||.|+|
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 99999999999 9999999999999999999987 555 7789999999999999999 999999999999
Q ss_pred cC
Q 009059 544 WK 545 (545)
Q Consensus 544 Wd 545 (545)
||
T Consensus 610 w~ 611 (615)
T 1pgu_A 610 WN 611 (615)
T ss_dssp EE
T ss_pred Ee
Confidence 96
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=296.97 Aligned_cols=267 Identities=23% Similarity=0.404 Sum_probs=210.0
Q ss_pred ccceeeeeecCCceeeEEEEee-cC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-------CCeEEEEeccCCccE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWI 308 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l-~~-H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-------~~~~~~~l~~h~~~V 308 (545)
.|..+++|+...+. +..+..+ .+ |.+.|.+++|+|++++||+|+.|+.|+|||++ ..+.+..+.+|...|
T Consensus 32 ~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V 110 (330)
T 2hes_X 32 TDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110 (330)
T ss_dssp SSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred CCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence 46778888887642 2234444 44 99999999999999999999999999999984 345677889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCC---eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC--ce
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SC 383 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~--~~ 383 (545)
.+++|+|++++|++|+.|++|++||+.... ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ ++
T Consensus 111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWEC 189 (330)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeE
Confidence 999999999999999999999999995332 34677889999999999999965 6669999999999999876 56
Q ss_pred eeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--------EEEEEecC-CCCCEEEEEEcCCCCEEEEEe
Q 009059 384 AGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG-HKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 384 ~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s 451 (545)
+..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .....+.. |...|.+++|++++ +|++++
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~ 268 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG 268 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe
Confidence 66665 4567999999998 568999999999999998754 44555655 89999999999776 566666
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCC-ceEEEEEcC--CCCEEEEEEcCCeEEEEeCCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~-~v~~~~~sp--~~~~l~~~~~dg~I~iwd~~~ 507 (545)
|+.|++||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+++
T Consensus 269 ~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999876521112222346766 899999999 688999999999999999865
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=303.78 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=232.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
++.|+||++ ++||+|. |++|+|||..+++....+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++. +..
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-~~~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRN 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-EEE
Confidence 456999976 4888875 899999999999887665 46788999999999999999999999999999998765 888
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+.+|...+.++.+++ .++++|+.|+.+++||..... .+..+. +...+..+.+.+++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 477899999999999998644 334444 456789999999999999999999999999987
Q ss_pred CE----EEEEecCCCCCEEEEEEcCCC-CEEEEE--e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 422 QV----CRLKLQGHKNQVHSVCWNTSG-EYLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 422 ~~----~~~~~~~h~~~I~~l~~sp~g-~~l~s~--s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++ .+.....|...|.+++|+|.+ .+++++ + |+.|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 345677899999999999976 455553 3 889999999887 66666654 567899999999999988
Q ss_pred EE--cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++ .|+.|+|||+.+++++ .+.+|.+.|++|+|+||+++||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6789999999999888 8889999999999999999999999999999997
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=304.42 Aligned_cols=293 Identities=16% Similarity=0.244 Sum_probs=252.4
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc--
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-- 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s-- 314 (545)
+.|..+++|+..++. .+..+.+|.+.|++++|++++ +|++|+.||.|++||+++++.+..+.+|...|.+++|+
T Consensus 139 s~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 139 ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp ETTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred cCCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 346788999988876 456678999999999999988 99999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee----------------------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
+++.+|++++.||.|++||+.+.... +..+.+|...|.++... + .++++++.||.
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~ 291 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G-NIVVSGSYDNT 291 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--T-TEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--C-CEEEEEeCCCe
Confidence 57889999999999999999875432 45677899999988544 3 46669999999
Q ss_pred EEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|++||+.+++++..+. +...+.+++|+|++..+++++.||.|++||+++++.+..+.+|...|.+++|+ +.+|++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 9999999999988886 45679999999999999999999999999999999999999999999999997 57888888
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTV 528 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd 528 (545)
|+.|++||+.+. ...... .+...+..++|++++.++++++ ++.|++||+.+++.+. +..|...|.+++|+ .
T Consensus 370 ~dg~v~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~ 443 (464)
T 3v7d_B 370 ADGSIRGWDANDY---SRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-G 443 (464)
T ss_dssp TTSEEEEEETTTC---CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-T
T ss_pred CCCcEEEEECCCC---ceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-C
Confidence 999999999876 333333 3667788899999999888888 8999999999999884 56899999999997 4
Q ss_pred CCEEEEEeCCCcEEEc
Q 009059 529 NGMVASASHDKCVKIW 544 (545)
Q Consensus 529 ~~~las~s~Dg~I~iW 544 (545)
..++++++.||.+.+|
T Consensus 444 ~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 444 KTLVAAVEKDGQSFLE 459 (464)
T ss_dssp TEEEEEEEETTEEEEE
T ss_pred CEEEEEEEeCCeEEEE
Confidence 4566666777766654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=314.35 Aligned_cols=278 Identities=18% Similarity=0.343 Sum_probs=230.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EEEEeccCC------------ccEEEEEEcCCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 317 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----------~~~~l~~h~------------~~V~~l~~sp~~ 317 (545)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCCee--------------------------------------eeE-eccCcccEEEEEE
Q 009059 318 --SRLATSSADRTVRVWDTENPDYS--------------------------------------LRT-FTGHSTTVMSLDF 356 (545)
Q Consensus 318 --~~l~t~s~dg~I~vwd~~~~~~~--------------------------------------~~~-~~~h~~~V~~l~~ 356 (545)
.+|++++.|++|++||+.+.... ... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 112 3679999999999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCC-CceeeEE--------eccCCeeEEEEeCCC-CEEEEEECCCeEEEEECCCCEE--
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 424 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~--------~~~~~v~~l~~sp~~-~~l~~~~~dg~I~i~d~~~~~~-- 424 (545)
+|++. ++++| .|+.|++||+++ +.....+ .+...+.+++|+|++ ..|++++.||.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99976 45577 699999999994 4444433 345679999999998 8999999999999999999876
Q ss_pred --EEEecCCCC------------CEEEEEEcCCCCEEEEEeCCcEEEEEcCC-CCCcceEEEEeeCCCc-----------
Q 009059 425 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 478 (545)
Q Consensus 425 --~~~~~~h~~------------~I~~l~~sp~g~~l~s~sdg~I~vwd~~~-~~~~~~i~~~~~~~~~----------- 478 (545)
+..+..|.. .|.+++|+|++++|++++++.|++||++. + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 677888876 99999999999999999899999999986 4 444555555421
Q ss_pred ----eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccC---------------------------------CCCee
Q 009059 479 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 521 (545)
Q Consensus 479 ----v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h---------------------------------~~~V~ 521 (545)
+..++|+|++++|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33499999999999999999999999999988765443 35688
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEc
Q 009059 522 SLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 522 ~l~~spd~~~las~s~Dg~I~iW 544 (545)
.++|+|++.+||+++.++ +++|
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998887 6666
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=289.53 Aligned_cols=261 Identities=25% Similarity=0.409 Sum_probs=231.5
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. ....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 43 ~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 119 (312)
T 4ery_A 43 ADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119 (312)
T ss_dssp TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred CCCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 35678888887765 355678999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 395 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~ 395 (545)
++|++++.|+.|++||+.+++. +..+..|...|.+++|+|++. ++++++.||.|++||+++++.+..+.. ...+..
T Consensus 120 ~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 197 (312)
T 4ery_A 120 NLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEE
Confidence 9999999999999999998764 788889999999999999975 556899999999999999988876643 346889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEE---EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~---l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
++|+|++.++++++.|+.|++||+++++.+..+.+|...+.+ ....+++.+|++++ |+.|++||+.++ ..+..
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~ 274 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQK 274 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhh
Confidence 999999999999999999999999999999999888765432 23346788999998 999999999887 77888
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEE--cCCeEEEEeCC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 506 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 506 (545)
+..|...|.+++|+|+++.|++++ .|+.|++|+.+
T Consensus 275 ~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 275 LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999987 58899999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-37 Score=314.88 Aligned_cols=273 Identities=16% Similarity=0.205 Sum_probs=234.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.++.. ...+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ-REIDQ 136 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-EEETT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-eeecc
Confidence 457999999999999999999999999988877777766 4456667899999999999999999999997654 67778
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+. +...+.+++|+|++..|++++.|+.|++||+++++.
T Consensus 137 ~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215 (420)
T ss_dssp SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence 9999999999999975 56699999999999999999888877 556799999999999999999999999999999999
Q ss_pred EEEecC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCc
Q 009059 425 RLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNK 478 (545)
Q Consensus 425 ~~~~~~---h~~~I~~l~---------------------~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~ 478 (545)
+..+.. |...|.+++ |+|++++|++++ |+.|++||++++ ..+..+ ..|...
T Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~ 292 (420)
T 3vl1_A 216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCS 292 (420)
T ss_dssp EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSC
T ss_pred eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCC
Confidence 988875 444555554 578999999999 999999999887 444444 347789
Q ss_pred eEEEEEcCCCC-EEEEEEcCCeEEEEeCCCCeE--EEecc-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 479 FHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 479 v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~--~~~~~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 99999999998 999999999999999998754 35555 6778888855 5788999999999999996
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=334.51 Aligned_cols=284 Identities=17% Similarity=0.304 Sum_probs=254.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEe-ccCCeeEEEEeC-CCCEEEEEECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~-~~~~v~~l~~sp-~~~~l~~~~~d 411 (545)
.++.. +..+.+|...|.+++|+|++.. +++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.|
T Consensus 85 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 85 NTGEK-VVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTCCE-EEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCcE-EEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 98775 7888899999999999999765 558899999999999887 5555554 456799999999 77889999999
Q ss_pred CeEEEEECCCCEEEEEecCCC-CCEEEEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 412 NYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~-~~I~~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
|.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC
Confidence 999999999887776666554 8999999999 999999999 999999999877 778888889999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCC--EEEEEeCCCcEEEc
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIW 544 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~--~las~s~Dg~I~iW 544 (545)
+.+|++++.|+.|++||+.+++.. .+..|...|.+++|+|++. ++++++ |+.+.+|
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 999999999999999999998877 7778899999999999987 566665 4556665
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=349.58 Aligned_cols=304 Identities=21% Similarity=0.374 Sum_probs=265.4
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC-
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP- 315 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp- 315 (545)
+.|..+++|+..++.. +..+.+|.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 634 ~~d~~i~vw~~~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 710 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK 710 (1249)
T ss_dssp ETTSCEEEEETTTCCE---EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCCE---EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence 3567899999988864 566789999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe------
Q 009059 316 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------ 388 (545)
Q Consensus 316 -~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~------ 388 (545)
++.++++++.|+.|++||+.++.. +..+.+|...|.+++|+|++. ++++++.||.|++||+.+++....+.
T Consensus 711 ~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 711 SNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp SSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred CCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 566899999999999999998775 788889999999999999976 55699999999999998765543321
Q ss_pred --------------------------------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 389 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 389 --------------------------------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
+...+.+++|+|++..+++++.++.|++||
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 234578899999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc--------------------------ceEEE
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------------------------ECIHE 471 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~--------------------------~~i~~ 471 (545)
+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+...... ..+..
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence 999999999999999999999999999999999 999999997531000 00000
Q ss_pred --------EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 472 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 472 --------~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.......+.+++|+|++.++++++.+|.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|+
T Consensus 949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 1123467899999999999999999999999999998877 6778999999999999999999999999999
Q ss_pred EcC
Q 009059 543 IWK 545 (545)
Q Consensus 543 iWd 545 (545)
+||
T Consensus 1029 vwd 1031 (1249)
T 3sfz_A 1029 VWN 1031 (1249)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=319.49 Aligned_cols=294 Identities=18% Similarity=0.307 Sum_probs=258.1
Q ss_pred ceeeeeecCCce-eeEEEEeecCCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC--------eEEEEeccCCcc
Q 009059 240 RVGRSAEVGKGF-TFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQW 307 (545)
Q Consensus 240 ~~~~~~~~~~~~-~~~~~~~l~~H~~~-V~~l~~sp--dg~~latg~~dg~I~lwd~~~~--------~~~~~l~~h~~~ 307 (545)
..+++|+..++. ....+..+.+|.+. |++++|+| ++++||+|+.||.|+|||+.++ +.+..+..|...
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 467888888661 11356778999999 99999999 9999999999999999999754 677888899999
Q ss_pred EEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 308 ITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 308 V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|.+++|+|++++|++++.+ +.|++||. +. .+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 9999999999999999988 78999983 33 47888899999999999999887888999999999999999999
Q ss_pred eeEEecc-C---CeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEe-c---CCCCCEEEEEEcCCCCEEEEEe-CC
Q 009059 384 AGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 384 ~~~~~~~-~---~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~-~---~h~~~I~~l~~sp~g~~l~s~s-dg 453 (545)
+..+..+ . .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ . .|...|.+++|+ ++.+|++++ |+
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~ 274 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA 274 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence 8888744 4 6999999999 999999999999999999999999988 6 899999999999 999999999 99
Q ss_pred cEEEEEcCCCCCcceEEEEeeC----CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~----~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd 528 (545)
.|++||+.++ ..+..+..+ ...+.++.|. ++.++++++.++.|++||+.+++.+ .+.+|...|.+++| |+
T Consensus 275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 9999999877 667777665 3667888886 8899999999999999999988777 77789999999998 77
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
|++++.||.|++||
T Consensus 350 ---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWS 363 (615)
T ss_dssp ---TEEEETTSCEEETT
T ss_pred ---cEEECCCCeEEEEE
Confidence 77888888888885
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=346.76 Aligned_cols=286 Identities=21% Similarity=0.353 Sum_probs=260.6
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+|||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+++. +..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+. +...+.+++|+|++..+++++.||.
T Consensus 688 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 688 TGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 8775 88899999999999999963 4577899999999999999999888775 4567999999999999999999999
Q ss_pred EEEEECCCCEEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-eCCCce
Q 009059 414 ISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKF 479 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~-------------h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-~~~~~v 479 (545)
|++||++++.....+.. +...+.+++|+|+|.++++++++.+.+||+.++ ..+..+. .|...|
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTI 843 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCC
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCce
Confidence 99999999887766542 233788999999999999999999999999887 4444444 788999
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999999999999887 7789999999999999999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=308.81 Aligned_cols=266 Identities=19% Similarity=0.328 Sum_probs=229.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-------EEEEeccCCccEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWIT 309 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-------~~~~l~~h~~~V~ 309 (545)
+.|..+++|+..++.. ...+.+|...|.+++|+|+|++||+|+.|+.|+||++.+.. ....+.+|.+.|.
T Consensus 85 s~D~~v~iWd~~~~~~---~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 85 SQDGRLIVWNALTSQK---THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS 161 (380)
T ss_dssp ETTSEEEEEETTTTEE---EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC
T ss_pred eCCCeEEEEECCCCcc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE
Confidence 3467899999888753 56778999999999999999999999999999999986532 3456789999999
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEe-----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCc
Q 009059 310 DVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGS 382 (545)
Q Consensus 310 ~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~ 382 (545)
++.|.|+ +.+|++|+.|++|++||+.++.. +..+ .+|...|.+++|++....++++|+.|+.|++||++ ..+
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 9999996 45799999999999999998775 5554 67999999999988656788899999999999998 456
Q ss_pred eeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC-------CEEEEEEcCCCCEEEEEe-CC
Q 009059 383 CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-------QVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 383 ~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~-------~I~~l~~sp~g~~l~s~s-dg 453 (545)
++..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+.. .|.+++|+|+|++|++++ |+
T Consensus 241 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 666665 456799999999999999999999999999999998888765432 489999999999999999 99
Q ss_pred cEEEEEcCCCCCcceEEEE----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 454 LVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.|++||+..+ ..+..+ ..|...|.+++|+|++.+|++++.|+.|++|++...+
T Consensus 321 ~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 321 DCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999876 555555 5788999999999999999999999999999997654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=286.21 Aligned_cols=270 Identities=22% Similarity=0.389 Sum_probs=229.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+.+|+||+++ +||+|. |++|+|||+++++.+..+ .+|...|++++|+|++++|++|+.||+|++||+++++. +..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-LRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee-EEE
Confidence 4679999986 787765 999999999999988766 46888899999999999999999999999999998765 888
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+.+|...+.++.+.+ .++++++.++.+++|+....... ..+ .+...+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 999999999888764 47779999999999999875433 333 3456789999999999999999999999999987
Q ss_pred CE----EEEEecCCCCCEEEEEEcCCCCE-EE--EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 422 QV----CRLKLQGHKNQVHSVCWNTSGEY-LA--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 422 ~~----~~~~~~~h~~~I~~l~~sp~g~~-l~--s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
++ .......+...|.++.++|++.. +. +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 33455668889999999997653 33 334 779999999876 333 33456788999999999998887
Q ss_pred EE--cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 494 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 494 ~~--~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++ .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=306.36 Aligned_cols=271 Identities=22% Similarity=0.403 Sum_probs=241.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
+....+|...|+|++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445578888999988 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee---EE-eccCCeeEEEEeCCCCEEEEEECC
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VF-KCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~---~~-~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
++.. +..+.+|...|.+++|++ .++++|+.||.|++||+.++.... .+ .+...+.++.| ++..+++++.|
T Consensus 202 ~~~~-~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGEM-LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCCE-EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCcE-EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 8775 888899999999999974 367799999999999999877652 23 24556888888 66899999999
Q ss_pred CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE
Q 009059 412 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490 (545)
Q Consensus 412 g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~ 490 (545)
|.|++||+++++.+..+.+|...|.++.| ++.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 99999999999999999999999999999 467899888 999999999887 788889999999999999 7888
Q ss_pred EEEEEcCCeEEEEeCCCCe---------EE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 491 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 491 l~~~~~dg~I~iwd~~~~~---------~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|++++.||.|++||+.++. .+ .+.+|...|.+++| ++.+|++++.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 44 78899999999999 788999999999999997
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=325.97 Aligned_cols=300 Identities=19% Similarity=0.276 Sum_probs=263.4
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
+..+++|+..++.. +..+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|++++|+|+++
T Consensus 34 ~g~v~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 34 SGRVEIWNYETQVE---VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp TSEEEEEETTTTEE---EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred CCEEEEEECCCCce---EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 56789999888764 556779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l 396 (545)
+|++++.||.|++||+.++......+.+|...|.+++|+|.+..++++++.||.|++||+.++.....+... ..+.++
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence 999999999999999998766678888999999999999944567779999999999999988877766543 679999
Q ss_pred EEeC--CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 397 RFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 397 ~~sp--~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+|+| ++..+++++.||.|++||+++++.+..+.+|...|.+++|+|++.+|++++ ||.|++||+.++ ..+..+.
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~ 267 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLN 267 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee
Confidence 9999 889999999999999999999999999999999999999999999999999 999999999887 7788888
Q ss_pred eCCCceEEEEEcCCCCE-EEEEEcCCeEEEEeCCCCe----------EEE------------------------------
Q 009059 474 CTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TLT------------------------------ 512 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~-l~~~~~dg~I~iwd~~~~~----------~~~------------------------------ 512 (545)
.+...+.+++|+|++.. +++++.++.+.+|++.... .+.
T Consensus 268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (814)
T 3mkq_A 268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL 347 (814)
T ss_dssp CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence 88999999999999874 3666778888899875432 111
Q ss_pred ----eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 513 ----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ----~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+...+.+++|+|++++|++++ ||.+.||+
T Consensus 348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 123445688999999999999888 88899885
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=296.50 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=205.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW 332 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp--~~~~l~t~s~dg~I~vw 332 (545)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998765 4678899999999999986 48999999999999999
Q ss_pred ECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCcee---eEE-eccCCeeEEEEeCC-----
Q 009059 333 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR----- 401 (545)
Q Consensus 333 d~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~---~~~-~~~~~v~~l~~sp~----- 401 (545)
|++++. .....+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... ..+ .+...+.++.|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 998764 2456788999999999999983 356779999999999999876322 222 23456889999987
Q ss_pred ------------CCEEEEEECCCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCCC----CEEEEEe-CCcEEEEEcC
Q 009059 402 ------------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIG 461 (545)
Q Consensus 402 ------------~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g----~~l~s~s-dg~I~vwd~~ 461 (545)
+.+|++++.|+.|++||++.. ..+..+.+|...|.+++|+|++ .+|++++ |++|++|++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 368899999999999999755 5677889999999999999986 8899999 9999999997
Q ss_pred CCCCc-ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 462 SGSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 462 ~~~~~-~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+.... .....+..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 63211 1222345678899999999999999999999999999975
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=288.12 Aligned_cols=247 Identities=19% Similarity=0.358 Sum_probs=209.9
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lw 376 (545)
..+.+|...|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|.+.|.+++|++. ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578899999999999999999999999999999997532 347889999999999999864 24677799999999999
Q ss_pred ECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCCE--EEEEecCCCCCEEEEEEcCC------
Q 009059 377 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 443 (545)
Q Consensus 377 d~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~I~~l~~sp~------ 443 (545)
|+++++ .+..+. +...+.+++|+|+ +..|++++.|+.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCe--
Q 009059 444 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 509 (545)
Q Consensus 444 -------g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~-- 509 (545)
+++|++++ |+.|++||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987642 22566788999999999999985 789999999999999997642
Q ss_pred --EEEe--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 --~~~~--~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1233 46889999999999999999999999999995
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=297.93 Aligned_cols=273 Identities=25% Similarity=0.465 Sum_probs=242.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
....+.+|.+.|.. ++++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34678899987643 245568999999999999999999999999999999999999997 569999999999999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCe
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
.+++. +..+.+|...|.++.|++ ..+++|+.||.|++||+.+++++..+.. ...+.++.| ++..+++++.||.
T Consensus 187 ~~~~~-~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 187 ETGEC-IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp TTTEE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred CcCcE-EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 98764 788899999999999974 3577999999999999999998887764 456888888 6789999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEE
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~ 492 (545)
|++||+++++.+..+.+|...|.+++| ++.++++++ |+.|++||++++ .++..+..|...+.++.++ +.+|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~ 333 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNILV 333 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEEE
Confidence 999999999999999999999999999 788999998 999999999887 7788888899999888874 56899
Q ss_pred EEEcCCeEEEEeCCCCeEE-Eecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~~~-~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.|+.|++||+.+++.+ .+.. |...|.+++|+ +++|++|+.||.|+|||
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999999999999998887 5554 88999999995 68999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=329.91 Aligned_cols=301 Identities=10% Similarity=0.073 Sum_probs=238.1
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----------EEeccCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----------STLEEHT 305 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----------~~l~~h~ 305 (545)
..|..+++|++.++..+.. +. |.+.|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.
T Consensus 76 s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp ETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred ECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 3578899999998865444 33 6789999999999999999999999999999988764 2346799
Q ss_pred ccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCeeeeEeccC------------------cccEEEEEEeCCCCcEEEE
Q 009059 306 QWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH------------------STTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 306 ~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h------------------~~~V~~l~~~p~~~~ll~s 366 (545)
..|++++|+|+ +.+|++|+.||.| +||++++.. +..+..| ...|.+++|+|++. +|++
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las 228 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIIT 228 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEE
Confidence 99999999996 5789999999999 999998654 6666555 57799999999975 5669
Q ss_pred EcCCCcEEEEECCCCceeeEEe-------------------ccCCeeEEEE-----------------------------
Q 009059 367 CDNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRF----------------------------- 398 (545)
Q Consensus 367 ~s~dg~I~lwd~~~~~~~~~~~-------------------~~~~v~~l~~----------------------------- 398 (545)
++.||.|++||+++++++.... +...|.+++|
T Consensus 229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred EECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEE
Confidence 9999999999997765432100 0001122222
Q ss_pred --------------------------------------------------------------------------------
Q 009059 399 -------------------------------------------------------------------------------- 398 (545)
Q Consensus 399 -------------------------------------------------------------------------------- 398 (545)
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~ 388 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTD 388 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEEC
T ss_pred ecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccc
Confidence
Q ss_pred -------------------------------------------------------eCCCCEEEEEECCCeEEEEECCCCE
Q 009059 399 -------------------------------------------------------QPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 399 -------------------------------------------------------sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
+|++..|++++.|++|++||+.++.
T Consensus 389 ~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~ 468 (902)
T 2oaj_A 389 KASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGD 468 (902)
T ss_dssp CGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCT
T ss_pred ccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcc
Confidence 2334456666677777777776542
Q ss_pred EE----EE--ec-----CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC--------------------------
Q 009059 424 CR----LK--LQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------------------------- 465 (545)
Q Consensus 424 ~~----~~--~~-----~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-------------------------- 465 (545)
.. .. +. +|...|.+++|+|++++||+|+ |++|+|||+.+++.
T Consensus 469 ~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (902)
T 2oaj_A 469 IQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNG 548 (902)
T ss_dssp TTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSC
T ss_pred ccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcc
Confidence 10 11 11 6888999999999999999999 99999999976521
Q ss_pred ----------------cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE------e-ccCCCCeeE
Q 009059 466 ----------------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSS 522 (545)
Q Consensus 466 ----------------~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~------~-~~h~~~V~~ 522 (545)
..++..+..|...|++++|+|+| +|++|+.|++|+|||+++...+. + .+|...|++
T Consensus 549 ~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~s 627 (902)
T 2oaj_A 549 VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTC 627 (902)
T ss_dssp SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEE
T ss_pred ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEE
Confidence 13467788899999999999999 99999999999999998887652 2 278999999
Q ss_pred EEEe-----CCC---CEEEEEeCCCcEEEcC
Q 009059 523 LAAS-----TVN---GMVASASHDKCVKIWK 545 (545)
Q Consensus 523 l~~s-----pd~---~~las~s~Dg~I~iWd 545 (545)
|+|+ ||| .+|++|+.|++|++||
T Consensus 628 v~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 628 IEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp EEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred EEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 9999 886 7999999999999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=294.93 Aligned_cols=270 Identities=16% Similarity=0.247 Sum_probs=229.4
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spd---g~~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~ 313 (545)
.|..+++|+..++..... ...+|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|
T Consensus 42 ~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 119 (357)
T 3i2n_A 42 GTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG 119 (357)
T ss_dssp CCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred CCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence 367899999988754322 22378999999999998 6999999999999999999888 88899999999999955
Q ss_pred ------cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcc----cEEEEE----EeCCCCcEEEEEcCCCcEEEEECC
Q 009059 314 ------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 314 ------sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~----~V~~l~----~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+|++++|++++.||.|++||+.++...+..+..|.+ .|.+++ |+|++. ++++++.||.|++||++
T Consensus 120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETT
T ss_pred ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECc
Confidence 678999999999999999999987755777766554 899998 677764 56688999999999999
Q ss_pred CCceeeEEeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCC-EEEEE
Q 009059 380 NGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGE-YLASV 450 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~-~l~s~ 450 (545)
+++......+...+.+++|+| ++..+++++.||.|++||+++++....+ .+|...|.+++|+|++. +|+++
T Consensus 199 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 199 NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence 999888888888999999999 8999999999999999999876544333 48999999999999998 78888
Q ss_pred e-CCcEEEEEcCCCCCc----------------ceEEEEeeCCCceEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCeE
Q 009059 451 S-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKT 510 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~----------------~~i~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~ 510 (545)
+ |+.|++||++.+... ..+..+..|...|.+++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 8 999999999875433 46788889999999999999999998 799999999999987653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=282.27 Aligned_cols=269 Identities=16% Similarity=0.254 Sum_probs=235.1
Q ss_pred cccceeeeeecCCce--eeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 237 PRDRVGRSAEVGKGF--TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~--~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
+.|..+++|++.++. .......+.+|...|.+++|+|++++|++|+.|+.|++|+............+...+..+.++
T Consensus 58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (340)
T 4aow_A 58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137 (340)
T ss_dssp ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence 346788899887653 234567899999999999999999999999999999999999999998888999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
+++.+|++++.|+.+++||+...........+|...+..++|++++. .++++++.|+.|++||+++++++..+. +...
T Consensus 138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~ 217 (340)
T 4aow_A 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217 (340)
T ss_dssp TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence 99999999999999999999876665666778999999999998754 467789999999999999999888776 4567
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE-
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE- 471 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~- 471 (545)
|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.|+.|++||+++. ..+..
T Consensus 218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~ 293 (340)
T 4aow_A 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDEL 293 (340)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEec
Confidence 99999999999999999999999999999999988874 56899999999999888888999999999876 33333
Q ss_pred --------EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 472 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 472 --------~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
...|...|.+++|+|++++|++++.|+.|+|||+++|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 34678899999999999999999999999999998875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=293.20 Aligned_cols=268 Identities=17% Similarity=0.241 Sum_probs=230.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+.+..+++|+..++.....+. ..|...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++| +
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 185 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--N 185 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--E
T ss_pred ECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--C
Confidence 346789999998886543322 238999999999999999999999999999999999999999999999999999 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeE
Q 009059 317 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~ 395 (545)
+.+|++++.||.|++||+......+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+. +...+.+
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 679999999999999999966666888999999999999999865 56689999999999999998887775 5567999
Q ss_pred EEEeCCCCEEEEEE---CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE--Ee-CCcEEEEEcCCCCCcceE
Q 009059 396 MRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS--VS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 396 l~~sp~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s--~s-dg~I~vwd~~~~~~~~~i 469 (545)
++|+|++..+++.+ .|+.|++||+++++.+..+. +...|.+++|+|++.+|++ |. |+.|++||+.++.. ...
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~ 342 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQ 342 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeE
Confidence 99999877666654 59999999999999988886 6788999999999999998 43 89999999987532 344
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
..+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 457789999999999999999999999999999999998876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=297.20 Aligned_cols=266 Identities=17% Similarity=0.135 Sum_probs=233.6
Q ss_pred ccceeeeeecCCce---eeEEEEeecCCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCeE-----EEEec
Q 009059 238 RDRVGRSAEVGKGF---TFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLE 302 (545)
Q Consensus 238 ~d~~~~~~~~~~~~---~~~~~~~l~~H~~~V~~l~~spd----g---~~latg~~dg~I~lwd~~~~~~-----~~~l~ 302 (545)
.|..+++|+...+. .+..+..+.+|...|++++|+|+ + ++|++++.|+.|++||+.+++. ...+.
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 113 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec
Confidence 35678888877664 22345667799999999999999 9 9999999999999999998876 88888
Q ss_pred cC-----CccEEEEEEc----CCCCE-EEEEeCCCeEEEEECCC------CCeeee-----Ee-------ccCcccEEEE
Q 009059 303 EH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSL 354 (545)
Q Consensus 303 ~h-----~~~V~~l~~s----p~~~~-l~t~s~dg~I~vwd~~~------~~~~~~-----~~-------~~h~~~V~~l 354 (545)
.| ...|.+++|+ |++++ |++++.||.|++||+.+ ... +. .+ ..|...|.++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEE
Confidence 88 5999999999 99999 99999999999999987 443 33 55 4488999999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-------cCCeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEE
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVC 424 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~ 424 (545)
+|+|++ ++++++.||.|++||+++++.+..+.. ...+.+++|+|++.+|++++.| +.|++||+++++.
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 999997 777999999999999999999988886 6789999999999999999999 9999999999999
Q ss_pred EEEecC-------------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe------eC---------
Q 009059 425 RLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------CT--------- 475 (545)
Q Consensus 425 ~~~~~~-------------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~------~~--------- 475 (545)
+..+.. |...|.+++|+|++++|++++ |+.|++||+.++ .++..+. .|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCT
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhcccc
Confidence 999998 999999999999999999999 999999999887 7788888 77
Q ss_pred ------CCceEEEEEcCCC----------CEEEEEEcCCeEEEEeCCCCe
Q 009059 476 ------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 476 ------~~~v~~~~~sp~~----------~~l~~~~~dg~I~iwd~~~~~ 509 (545)
...|.+++|+|++ ++|++++.|+.|++||+.+++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=314.20 Aligned_cols=267 Identities=16% Similarity=0.266 Sum_probs=228.9
Q ss_pred CcccceeeeeecCCcee--eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 236 DPRDRVGRSAEVGKGFT--FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~--~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
.+.|..+++|+..+... -.....+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|
T Consensus 401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 45678899998875422 2345678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeE---eccCcccEEEEEEeCCCC-cEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~---~~~h~~~V~~l~~~p~~~-~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
+|++++|++|+.|++|++||+..... ... ..+|...|.+++|+|++. .++++++.|+.|++||++++++...+.
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 559 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 99999999999999999999865432 222 246889999999999863 477799999999999999998888776
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 468 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~ 468 (545)
+...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...|.+++|+|++.+|+++.++.|+|||+.++ ..
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~ 635 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SI 635 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CC
Confidence 45679999999999999999999999999999999888776 456899999999999999988889999999886 44
Q ss_pred EEEEeeC-------------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 469 IHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 469 i~~~~~~-------------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+..+..+ ...+.+++|+|++++|++++.||.|+|||+..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 4444321 12378899999999999999999999999853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=293.47 Aligned_cols=263 Identities=17% Similarity=0.241 Sum_probs=229.3
Q ss_pred ceeeeeecCCceeeEEEEeecC--CCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~--H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
..+++|+..++.....+..+.. |...|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 4689999988877666665543 8899999999999 679999999999999999999999999999999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-
Q 009059 314 SP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 388 (545)
Q Consensus 314 sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~- 388 (545)
+| ++.+|++++.||.|++||+.+++. +..+ .+|...|.+++|+|++. ++++++.||.|++||+++++....+.
T Consensus 124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 124 HPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccce
Confidence 99 899999999999999999998764 6666 68999999999999875 55588889999999999876554332
Q ss_pred ----------------------------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--------------EEEE
Q 009059 389 ----------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRL 426 (545)
Q Consensus 389 ----------------------------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--------------~~~~ 426 (545)
+...+.+++|+ +..+++++.|+.|++||++++ ..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 55679999999 579999999999999999876 3477
Q ss_pred EecCCCCCEEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCcc-eEEEEeeC--CCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 427 KLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 427 ~~~~h~~~I~~l~~sp~--g~~l~s~s-dg~I~vwd~~~~~~~~-~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.+..|...|.+++|+|+ +.+|++++ |+.|++||+.++.... ....+..| ...|.+++|+|++++|++++.|+.|
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 88889999999999999 99999999 9999999999875433 55567777 6899999999999999999999999
Q ss_pred EEEeCC
Q 009059 501 ELWNMT 506 (545)
Q Consensus 501 ~iwd~~ 506 (545)
++||+.
T Consensus 360 ~iwd~~ 365 (366)
T 3k26_A 360 WRWDRL 365 (366)
T ss_dssp EEEEC-
T ss_pred EEEEec
Confidence 999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=290.21 Aligned_cols=266 Identities=19% Similarity=0.286 Sum_probs=231.0
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..+|.... +..+.+|...|+||+|+|+|++||+|+.||.|+|||+++++.+..+.+|...|.++.|+ +
T Consensus 123 ld~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~ 199 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S 199 (420)
T ss_dssp ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred eCCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C
Confidence 46789999999986543 33466889999999999999999999999999999999999999999999999998885 6
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee----e-EEeccCC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G-VFKCQSG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~----~-~~~~~~~ 392 (545)
.+|++|+.|+.+++||.......+..+.+|...+..+.|+|++. ++++++.|+.|++|++.+++.. . ...+...
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~ 278 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence 79999999999999999987777888999999999999999975 5558999999999999876532 2 2235567
Q ss_pred eeEEEEeCCCCEEEE-E--ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRILA-A--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~~-~--~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
|.+++|+|.+..+++ + +.|+.|++||+.++.+...+.. ...+.++.|++++..+++++ |+.|+|||+.++
T Consensus 279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--- 354 (420)
T 4gga_A 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 354 (420)
T ss_dssp EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence 999999997665543 3 3589999999999999988875 46789999999999888764 789999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.++.++.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 788999999999999999999999999999999999999776544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=289.99 Aligned_cols=253 Identities=21% Similarity=0.298 Sum_probs=217.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVR 330 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~ 330 (545)
.+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 356788999999999999999999999999999999998 66777889999999999999987 89999999999999
Q ss_pred EEECCCCCe-eeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceeeE---EeccCCeeEEEEeC-----
Q 009059 331 VWDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGV---FKCQSGATQMRFQP----- 400 (545)
Q Consensus 331 vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~~---~~~~~~v~~l~~sp----- 400 (545)
+||+.++.. .+..+..|...|.+++|+|+. ..++++++.|+.|++||+++...... ..+...+.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999998752 467778899999999999982 34666899999999999998743332 24556799999999
Q ss_pred --------CCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCC
Q 009059 401 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 401 --------~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~sp~---g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999765 355678889999999999999 89999999 9999999998864
Q ss_pred CcceEEEEe--eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 465 KGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 465 ~~~~i~~~~--~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.......+. .+...|.+++|+|++++|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 322333333 3778899999999999999999999999999873
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=292.29 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.1
Q ss_pred EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEE
Q 009059 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 300 ~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd 377 (545)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|++. ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46788999999999999763 235677999999999999
Q ss_pred CCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCCE---EEEEecCCCCCEEEEEEcCC------
Q 009059 378 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 443 (545)
Q Consensus 378 ~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~~---~~~~~~~h~~~I~~l~~sp~------ 443 (545)
++++. ....+. +...|.+++|+|+ +..|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344443 4567999999997 6789999999999999998753 23456779999999999997
Q ss_pred -----------CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC----CEEEEEEcCCeEEEEeCCC
Q 009059 444 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 444 -----------g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~----~~l~~~~~dg~I~iwd~~~ 507 (545)
+++|++++ |+.|++||++......++..+..|...|.+++|+|++ .+|++++.|++|++||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46889888 9999999997554335677788999999999999986 7899999999999999976
Q ss_pred C---e--EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~---~--~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
. . ...+..|...|.+++|+|++++||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=296.43 Aligned_cols=277 Identities=15% Similarity=0.234 Sum_probs=234.2
Q ss_pred eEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCe----EEEEeccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCC-
Q 009059 266 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 338 (545)
Q Consensus 266 V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~----~~~~l~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~- 338 (545)
...++++|+...+ ++++.||.|+||++.... .+..+.+|...|++++|+| ++.+|++|+.||.|+|||+.++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4458888876544 457889999999986542 3445778999999999999 99999999999999999998763
Q ss_pred -----eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE--e-ccCCeeEEEEeCCCCEEEEEEC
Q 009059 339 -----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 339 -----~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--~-~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..+..+.+|...|.+++|+|++..++++++.||.|++||+.+++++..+ . +...+.+++|+|++..|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 3467888999999999999998778889999999999999999998888 3 5567999999999999999999
Q ss_pred CCeEEEEECCCCEEEEEe-cCCCCC-EEEEEEcCCCCEEEEE---e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 411 ENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~-~~h~~~-I~~l~~sp~g~~l~s~---s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
|+.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++|
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~ 275 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFF 275 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEE
Confidence 999999999999999888 778776 8999999999999999 5 88999999988654222322 246678999999
Q ss_pred cCCCCEEEEEE-cCCeEEEEeCCCCe--EEEec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 485 HPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 485 sp~~~~l~~~~-~dg~I~iwd~~~~~--~~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++.+|++++ .|+.|++||+.+++ ...+. .|...|.+++|+|++.++++ .|+.+++|+
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 99999997665 69999999999887 33333 36699999999999988775 567899995
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=276.87 Aligned_cols=263 Identities=14% Similarity=0.157 Sum_probs=233.1
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|++
T Consensus 52 ~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 127 (369)
T 3zwl_B 52 KDSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG 127 (369)
T ss_dssp SSSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS
T ss_pred CCCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC
Confidence 35678899888775 456788999999999999999999999999999999999999998887 88999999999999
Q ss_pred CEEEEEeCC-----CeEEEEECCCCCe----------eeeEeccCcc--cEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 318 SRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 318 ~~l~t~s~d-----g~I~vwd~~~~~~----------~~~~~~~h~~--~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
++|++++.+ +.|++||+..... ....+..|.. .+.+++|+|++. ++++++.||.|++||+++
T Consensus 128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTT
T ss_pred CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCC
Confidence 999999999 9999999976542 2344555666 899999999976 555888999999999998
Q ss_pred -CceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----
Q 009059 381 -GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---- 453 (545)
Q Consensus 381 -~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---- 453 (545)
.+.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++ ++
T Consensus 207 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC----
T ss_pred CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceE
Confidence 67777776 45679999999999999999999999999999999888887 788999999999999999998 66
Q ss_pred ----------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 454 ----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 454 ----------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.+++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++|+++.+.
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp ---------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 7999999887 7788888999999999999999999999999999999997654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=285.96 Aligned_cols=297 Identities=10% Similarity=0.068 Sum_probs=249.2
Q ss_pred eeeeecCC-ceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-----EeccCCccEEEEEEcC
Q 009059 242 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP 315 (545)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-----~l~~h~~~V~~l~~sp 315 (545)
.++|.+.. +..+..+..+..+. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|++
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred eEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC
Confidence 34554433 12344555565554 46699999988888888889999999999998887 4457899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
++.++++++.|+.|++||+.+++. +..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 258 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRG 258 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceE
Confidence 999999999999999999998764 6777789999999999999988888888899999999999999888887778999
Q ss_pred EEEeCCCCEEEEEE--------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-e-CCcEEEEEcCCCCC
Q 009059 396 MRFQPRLGRILAAA--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSK 465 (545)
Q Consensus 396 l~~sp~~~~l~~~~--------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~-s-dg~I~vwd~~~~~~ 465 (545)
++|+|+++.+++++ .|+.|++||+++++.+..+. |...+.+++|+|+++++++. + ++.|++||+.++
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-- 335 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-- 335 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT--
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC--
Confidence 99999999999888 48899999999998777663 56689999999999866544 5 889999999876
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEc---------------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~---------------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~ 530 (545)
..+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|+++
T Consensus 336 -~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 413 (433)
T 3bws_A 336 -KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNR 413 (433)
T ss_dssp -EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSC
T ss_pred -cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCC
Confidence 5555554 6778999999999999998887 4699999999999885555567899999999999
Q ss_pred EEEEEeC-CCcEEEcC
Q 009059 531 MVASASH-DKCVKIWK 545 (545)
Q Consensus 531 ~las~s~-Dg~I~iWd 545 (545)
+|++++. |+.|+||+
T Consensus 414 ~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 414 YLVISDFLDHQIRVYR 429 (433)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCeEEEEE
Confidence 9998875 99999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=281.37 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=227.8
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE--eccCCccEEEEEEcCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~ 316 (545)
+..+++|+..++. +..+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.... +..|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 5678899887764 446778889999999999999999999999999999999998875543 4679999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC--------------
Q 009059 317 LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------------- 379 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-------------- 379 (545)
+++|++++.|+.|++||+..... ......+|...|.+++|+|++. ++++++.||.|++||++
T Consensus 108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 186 (372)
T 1k8k_C 108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 186 (372)
T ss_dssp SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccc
Confidence 99999999999999999987652 2334467899999999999875 55688899999999954
Q ss_pred ----CCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 380 ----NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 380 ----~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.++++..+. +...+.+++|+|++..+++++.|+.|++||+++++.+..+..|...|.+++|+|++.+|+++.|+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~ 266 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF 266 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCe
Confidence 566776664 456799999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCC--CC-----------------------------CcceE------EEE-eeCCCceEEEEEc-CCC---CEEE
Q 009059 455 VRVWSIGS--GS-----------------------------KGECI------HEL-SCTGNKFHSCVFH-PTF---PSLL 492 (545)
Q Consensus 455 I~vwd~~~--~~-----------------------------~~~~i------~~~-~~~~~~v~~~~~s-p~~---~~l~ 492 (545)
|++|++.. +. ..... ..+ .+|...|.+++|+ +++ .+|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 31 00110 222 3788999999966 666 8999
Q ss_pred EEEcCCeEEEEeCCCCe
Q 009059 493 VIGCYETLELWNMTENK 509 (545)
Q Consensus 493 ~~~~dg~I~iwd~~~~~ 509 (545)
+++.||.|++||+.+++
T Consensus 347 s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEETTSEEEEEEHHHHH
T ss_pred EecCCCceEEEEecChh
Confidence 99999999999986643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=283.02 Aligned_cols=251 Identities=20% Similarity=0.351 Sum_probs=213.7
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCc
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSE 372 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~ 372 (545)
|+++..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 35567788999999999999999999999999999999997432 2466788999999999998762 356779999999
Q ss_pred EEEEECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcC---
Q 009059 373 IRYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT--- 442 (545)
Q Consensus 373 I~lwd~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp--- 442 (545)
|++||+.+++ .+..+. +...+.+++|+|+ +..+++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999886 444444 4567999999999 899999999999999999887 34556778999999999999
Q ss_pred ----------CCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCC---CCEEEEEEcCCeEEEEeCCC
Q 009059 443 ----------SGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 443 ----------~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~I~iwd~~~ 507 (545)
++.+|++++ |+.|++||++++.. ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 699999999 99999999987643 2355678889999999999999 89999999999999999988
Q ss_pred Ce----EE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NK----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~----~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 241 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 63 22 2334889999999999999999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=284.11 Aligned_cols=259 Identities=14% Similarity=0.146 Sum_probs=215.2
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecc---CCccEEEEEEc
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS 314 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~---h~~~V~~l~~s 314 (545)
|..+++|+..++.... ...+.+|.+.|.+++|+| ++++|++++.|+.|++||+.+ ..+..+.. |...|.+++|+
T Consensus 95 dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp TSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred CCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence 5678888888765432 233457999999999999 789999999999999999986 44555543 45889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEecc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQ 390 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~~ 390 (545)
|++++|++++.|+.|++||+. +. .+..+.+|...|.+++|+|++..++++++.|+.|++||+++ +.++..+.+.
T Consensus 173 ~~~~~l~~~~~d~~i~i~d~~-~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 173 VSRQMLATGDSTGRLLLLGLD-GH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp TTTTEEEEEETTSEEEEEETT-SC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCEEEEECC-CC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence 999999999999999999995 33 47888899999999999999886888999999999999997 6777778888
Q ss_pred CCeeEEEEeC-CCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----------------CCEEEEEEcCCCCEEEEEe-
Q 009059 391 SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK-----------------NQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 391 ~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----------------~~I~~l~~sp~g~~l~s~s- 451 (545)
..+.+++|+| ++..|++++.|+.|++||+++++....+.+|. ..+..++|+|++++ +++
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 8999999999 99999999999999999999876655554432 34445666666666 445
Q ss_pred CCcEEEEEcCCCCCcceEEEEee--CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 452 DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
|+.|++||+.++ .++..+.. +...+..++|+|++++|++++ |+.|++||+++
T Consensus 329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 899999999887 66777776 456777889999999999996 99999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=268.97 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=223.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---eEEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~---~~~~~l~~h~~~V~~l~~s 314 (545)
.|..+++|+..++. ....+..|...|.+++|+|++++|++++.|+.|++|++... +.+..+.+|...|.+++|
T Consensus 37 ~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 112 (313)
T 3odt_A 37 RDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF- 112 (313)
T ss_dssp TTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred cCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence 46788999987765 34567789999999999999999999999999999998654 567788899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCC
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSG 392 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~ 392 (545)
++.+|++++.||.|++|| . ......+..|...+.++.|.|....++++++.||.|++||. .+....+. +...
T Consensus 113 -~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~ 186 (313)
T 3odt_A 113 -QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDV 186 (313)
T ss_dssp -ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSC
T ss_pred -cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCccc
Confidence 577999999999999999 2 33477888899999999999844566779999999999994 44555554 5667
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++. |++++ |+.|++||+.++ ..+..
T Consensus 187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~---~~~~~ 261 (313)
T 3odt_A 187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENG---SLKQV 261 (313)
T ss_dssp EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTC---CEEEE
T ss_pred EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCC---ceeEE
Confidence 99999999966 99999999999999999999999999999999999999996 55555 999999999887 67888
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+..+...|.+++|+|+++ +++++.|+.|++||+++++..
T Consensus 262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 888999999999999998 778999999999999987765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=265.66 Aligned_cols=264 Identities=19% Similarity=0.275 Sum_probs=226.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++||..+|..... ..+.+|...|++++|+|++++||+|+.||.|+|||+++++.+..+.+|...+.++.+ ++
T Consensus 43 ~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~ 119 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NS 119 (318)
T ss_dssp ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ET
T ss_pred eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CC
Confidence 467899999999875543 345688999999999999999999999999999999999999999999999887766 46
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-----EEeccCC
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-----~~~~~~~ 392 (545)
.+|++++.++.+++|+.......+..+.+|...+..+.+.+++. ++++++.|+.|++||+++++... .......
T Consensus 120 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 198 (318)
T 4ggc_A 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198 (318)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence 79999999999999999988777888999999999999999975 55599999999999998765432 2234456
Q ss_pred eeEEEEeCCCCEEE---EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCc
Q 009059 393 ATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG 466 (545)
Q Consensus 393 v~~l~~sp~~~~l~---~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~ 466 (545)
+..+.+.+.+..++ +++.++.|++||.+......... +...+..++|++++..+++++ |+.|++||+.++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--- 274 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 274 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---
Confidence 89999999876554 33457899999999987776655 678899999999999887654 789999999887
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 509 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 509 (545)
.++.++.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 275 ~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7888999999999999999999999999999999999997653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=276.79 Aligned_cols=274 Identities=14% Similarity=0.157 Sum_probs=216.0
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEEC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 334 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~ 334 (545)
+..+.+|.+.|+|++|+|||++||+|+.+ .++||++.+++.......+ .+..++|.++++++ ++++.|++|++||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 44568899999999999999999999866 4789999988776554432 47788898888877 56778899999999
Q ss_pred CCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ceeeEEeccCCeeEEEEeCCCCEEEEE--ECC
Q 009059 335 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAA--AIE 411 (545)
Q Consensus 335 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~~~--~~d 411 (545)
.+++. +..+. |...|.++.|+++. ++ ++. ++.|++||+.++ +.+..+.. ....+++++ ..++++ +.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98764 56665 66799999999762 33 333 789999999988 77666654 444566676 566664 679
Q ss_pred CeEEEEECCCCE---------------E-EEEecCCCCCEEEEEEcCCCCEEEEEe-CCc-EEEEEcCCCCCcceEEEEe
Q 009059 412 NYISILDVETQV---------------C-RLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 412 g~I~i~d~~~~~---------------~-~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~-I~vwd~~~~~~~~~i~~~~ 473 (545)
|.|++||++++. + +..+.+|...|.+++|+|+|++|++++ |++ |++||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2 677889999999999999999999999 998 999999887 7788887
Q ss_pred -e-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE---Ee--------------------c-cCCCCeeEEEEeC
Q 009059 474 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 527 (545)
Q Consensus 474 -~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~--------------------~-~h~~~V~~l~~sp 527 (545)
+ |...|.+++|+|++++|++++.|+.|++||+...... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 11 0 1122347799999
Q ss_pred CCCEEEEEeCCCcEEEcC
Q 009059 528 VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 528 d~~~las~s~Dg~I~iWd 545 (545)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=288.29 Aligned_cols=266 Identities=14% Similarity=0.156 Sum_probs=211.0
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~h~~~V~~l~~s 314 (545)
.|..+++|+..++. +..+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++ ....+..|...|.+++|+
T Consensus 31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence 45678889887652 34577889999999999999999999999999999999999877 677788999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCe--eeeEecc-CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-----------
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----------- 380 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----------- 380 (545)
|++++|++++.|+.|++||++.+.. ....+.. |...|.+++|+|++. ++++++.|+.|++||+..
T Consensus 110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 188 (377)
T 3dwl_C 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASV 188 (377)
T ss_dssp TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCS
T ss_pred CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccc
Confidence 9999999999999999999987652 3566777 999999999999875 666999999999999852
Q ss_pred -------CceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE----EEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 381 -------GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 381 -------~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
++++..+.+...+.+++|+|++.+|++++.|+.|++||+++++. +..+.+|...|.+++|+|++++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp SCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred cccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 44555555666799999999999999999999999999998876 7788899999999999999999999
Q ss_pred EeCCcEEEEEcCCCCC---------------------------cceE------EEE----------------eeCCCceE
Q 009059 450 VSDELVRVWSIGSGSK---------------------------GECI------HEL----------------SCTGNKFH 480 (545)
Q Consensus 450 ~sdg~I~vwd~~~~~~---------------------------~~~i------~~~----------------~~~~~~v~ 480 (545)
++++.+.+|+...... ...+ ..+ ..|...|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~ 348 (377)
T 3dwl_C 269 GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA 348 (377)
T ss_dssp ESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred EcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence 9977777887752210 0000 111 12888999
Q ss_pred EEEEcCCCC----EEEEEEcCCeEEEEeC
Q 009059 481 SCVFHPTFP----SLLVIGCYETLELWNM 505 (545)
Q Consensus 481 ~~~~sp~~~----~l~~~~~dg~I~iwd~ 505 (545)
++.+.+... .|++++.||.|++||+
T Consensus 349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 999766543 5999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=277.12 Aligned_cols=300 Identities=15% Similarity=0.255 Sum_probs=217.0
Q ss_pred cceeeeeecCCceeeEEEEe----------ecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc
Q 009059 239 DRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 307 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~----------l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~ 307 (545)
|..+++|+..++.....+.. ..+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. +...
T Consensus 65 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~ 143 (408)
T 4a11_B 65 DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEET 143 (408)
T ss_dssp TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCc
Confidence 45677777766543322221 136999999999999 78899999999999999999999888876 7788
Q ss_pred EEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-e
Q 009059 308 ITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-C 383 (545)
Q Consensus 308 V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~ 383 (545)
+.++.|++. +.+|++++.|+.|++||+.++.. +..+.+|...|.+++|+|++..++++++.||.|++||++++. +
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 999999984 45999999999999999998764 788889999999999999998888899999999999998765 3
Q ss_pred eeEE----------------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC------CCEEEEEEc
Q 009059 384 AGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWN 441 (545)
Q Consensus 384 ~~~~----------------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~I~~l~~s 441 (545)
+..+ .+...+.+++|+|++.++++++.||.|++||+++++....+..+. .....+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 3332 244669999999999999999999999999999887654443221 122223333
Q ss_pred CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCee
Q 009059 442 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVS 521 (545)
Q Consensus 442 p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~ 521 (545)
....+++++.++.|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.........
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~- 378 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK- 378 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------------
T ss_pred CCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-
Confidence 4456666666999999999887 778889999999999999999999999999999999999998877322222222
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEcC
Q 009059 522 SLAAST-VNGMVASASHDKCVKIWK 545 (545)
Q Consensus 522 ~l~~sp-d~~~las~s~Dg~I~iWd 545 (545)
..+.+ ....+.+++.|+.+++|+
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp -------------------------
T ss_pred -cccccccceeecccCccCceeecC
Confidence 22333 334566777899999995
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=292.32 Aligned_cols=263 Identities=16% Similarity=0.228 Sum_probs=218.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CCe--eee
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDY--SLR 342 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~---~~~--~~~ 342 (545)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +.. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677887777665 388 556888888 89999999999999 999999999999999999875 321 122
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEEe-------------ccCCeeEEE--EeCCCCE
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGR 404 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~-------------~~~~v~~l~--~sp~~~~ 404 (545)
.+ .|...|.+++|+|++. ++++++.||.|++||+. +++....+. ....+.++. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 23 5999999999999865 56699999999999995 555444333 234456666 5578889
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceE
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFH 480 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~--h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~ 480 (545)
+++++.|+.|++||+++++.+..+.+ |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceE
Confidence 99999999999999999999999988 889999999999999999999 999999999886 7777775 6777899
Q ss_pred EEEEcC----CCCEEEEEEcCCeEEEEeCCCCeEE-Eecc--------------------------CCCCeeEEEEeCCC
Q 009059 481 SCVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVN 529 (545)
Q Consensus 481 ~~~~sp----~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~--------------------------h~~~V~~l~~spd~ 529 (545)
+++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ ++
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~ 340 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND 340 (437)
T ss_dssp EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence 996664 5779999999999999999998876 3332 56678999999 77
Q ss_pred CEEEEEeCCCcEEEcC
Q 009059 530 GMVASASHDKCVKIWK 545 (545)
Q Consensus 530 ~~las~s~Dg~I~iWd 545 (545)
++|++|+.||.|++||
T Consensus 341 ~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 341 KILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEEGGGTEEEEEE
T ss_pred eEEEecCCCCeEEEEE
Confidence 8999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=280.66 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=222.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe---EEEEecc-------------------------------------
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 303 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~---~~~~l~~------------------------------------- 303 (545)
.+|.|++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999977766 57899999999888 5555442
Q ss_pred -----------------CCccEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCCeeeeEec--cCcccEEEEEEeCCCC
Q 009059 304 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 361 (545)
Q Consensus 304 -----------------h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~--~~~~~~~~~~--~h~~~V~~l~~~p~~~ 361 (545)
|...|.+++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 6554 55554 5678999999999975
Q ss_pred cEEEEEcCCCcEEEEECCCCceee----EE-eccCCeeEEEEeCC---CCEEEEEECCCeEEEEECCCCEEEEE-ecCCC
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAG----VF-KCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 432 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~----~~-~~~~~v~~l~~sp~---~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~ 432 (545)
+|++++.+|.|++|++.++.... .+ .+...+.+++|+|+ +.+|++++.|+.|++||++++..+.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 45588889999999998877553 33 35577999999999 88999999999999999999887776 56899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-------------------------eCCCceEEEEEcC
Q 009059 433 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 486 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-------------------------~~~~~v~~~~~sp 486 (545)
..|.+++|+ ++.+|++++ |+.|++||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4555554 2245789999999
Q ss_pred CCCEEEEEE-cCCeEEEEeC--CCC---eEE-EeccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEc
Q 009059 487 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 544 (545)
Q Consensus 487 ~~~~l~~~~-~dg~I~iwd~--~~~---~~~-~~~~h~~~V~~l~~spd~~~las~s~-------Dg~I~iW 544 (545)
++++|++++ .++.|++|++ ..+ +.+ .+..| ..|.+++|+|++ ++++.+. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8899999999 554 444 55566 889999999954 5554433 4557777
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=280.79 Aligned_cols=270 Identities=16% Similarity=0.190 Sum_probs=222.7
Q ss_pred cccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------eEEEEeccCCcc
Q 009059 237 PRDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQW 307 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~-------~~~~~l~~h~~~ 307 (545)
..+..+++|+..+.. ....+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++ +.+..+.+|...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~ 133 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe
Confidence 346778899876543 3345667889999999999999 9999999999999999999987 567888999999
Q ss_pred EEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEe--ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 308 ITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 308 V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
|.+++|+|++ .+|++++.||.|++||+.++.. +..+ .+|...|.+++|+|++..+ ++++.||.|++||+++++.+
T Consensus 134 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp EEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCcee
Confidence 9999999998 6999999999999999998764 6777 7899999999999987654 58889999999999999998
Q ss_pred eEE-eccC-C-eeEEEEeCCCCEEEEE---ECCCeEEEEECCCCEE-EEEe-cCCCCCEEEEEEcCCCCEEEE-Ee-CCc
Q 009059 385 GVF-KCQS-G-ATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLAS-VS-DEL 454 (545)
Q Consensus 385 ~~~-~~~~-~-v~~l~~sp~~~~l~~~---~~dg~I~i~d~~~~~~-~~~~-~~h~~~I~~l~~sp~g~~l~s-~s-dg~ 454 (545)
..+ ..+. . +..+.|+|++..++++ +.|+.|++||++++.. +... ..|...|.+++|+|++.+|++ ++ |+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~ 291 (402)
T 2aq5_A 212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS 291 (402)
T ss_dssp EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence 887 3333 2 7999999998777777 5899999999998643 2222 247788999999999999864 54 899
Q ss_pred EEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 455 VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 455 I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.+++..
T Consensus 292 i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 292 IRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred EEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999988753 22333333 5689999999999987654 5669999999887654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=287.10 Aligned_cols=262 Identities=9% Similarity=0.068 Sum_probs=212.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
.-...|.+++|+|||+++|+++.|++|+ |...+ ..+.+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 75554 4457999999999999998 45555665543211
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-----CeeEEEEeCCCCEEEEEECCCeEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-----~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
...+ .|...|.+++|+|+|..+ ++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++++.||.|+
T Consensus 79 ~~~~-~~~~~V~~vawSPdG~~L-As~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLNS-QPVCYPRVCKPSPIDDWM-AVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SSTT-SCSCCEEEEEECSSSSCE-EEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eeec-CCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 2222 458899999999998654 5889999999999654 555555332 499999999999999999999999
Q ss_pred EEECCCCE-------EEEEe----cCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEE-eeCCCceEEEE
Q 009059 416 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 483 (545)
Q Consensus 416 i~d~~~~~-------~~~~~----~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~ 483 (545)
+||+.++. .+.++ .+|...|.+++|+|+| +++++.|+.|++||+..........++ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 35666 6688899999999999 555444999999999876532244566 36788999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE--eCCCCEEEEEeCCCcEEEcC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~--spd~~~las~s~Dg~I~iWd 545 (545)
|+ +..|++++ +++|++||+.+++.. ...+|...|..++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57777776 699999999999985 34389999999999 999999999999999 9984
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=286.51 Aligned_cols=267 Identities=14% Similarity=0.193 Sum_probs=213.9
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEEEEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRF 313 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~~l~~ 313 (545)
..|..+++|+...+... .+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+++......... +...+.+++|
T Consensus 139 s~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 217 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV 217 (435)
T ss_dssp ETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEE
T ss_pred eCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEE
Confidence 34677888888766432 3445779999999999998 789999999999999999987655444433 4456889999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE----ec
Q 009059 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KC 389 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~----~~ 389 (545)
+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++|+.|+.|++||+++.+....+ .+
T Consensus 218 ~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 218 SASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp ETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred CCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 999999999999999999999753 367888999999999999999889999999999999999887654333 35
Q ss_pred cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCC------CEEEEEEcCCCCEEEEEe------------
Q 009059 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWNTSGEYLASVS------------ 451 (545)
Q Consensus 390 ~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~------~I~~l~~sp~g~~l~s~s------------ 451 (545)
...|.+++|+|++.+|++++.||.|++||+.++.....+..|.. .+..+.|+|++.+++++.
T Consensus 296 ~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 375 (435)
T 4e54_B 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 375 (435)
T ss_dssp SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTT
T ss_pred cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEec
Confidence 66799999999999999999999999999999887777766543 234556777777766654
Q ss_pred -CCcEEEEEcCCCCCcceEEEEe-eCCCceEEE-EEcCCCCEEEEEEcCCeEEEEeCCCCeE
Q 009059 452 -DELVRVWSIGSGSKGECIHELS-CTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKT 510 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 510 (545)
++.|++||..++ ..+..+. .|...|.++ +|+|++.+|+++ .|+.|+|||+++++.
T Consensus 376 ~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 376 ELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEART 433 (435)
T ss_dssp CCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC----
T ss_pred CCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcCee
Confidence 247999999887 5555543 577778887 699999988775 488999999998865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=298.05 Aligned_cols=256 Identities=9% Similarity=0.057 Sum_probs=198.2
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCeEE----EEeccCCccEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCCe--
Q 009059 272 SPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 339 (545)
Q Consensus 272 spdg~~latg~~dg~I~lwd~~~~~~~----~~l~~h~~~V~~l~~sp~------~~~l~t~s~dg~I~vwd~~~~~~-- 339 (545)
+|+++.||+++.|++|+||++.+++.. ..+..|.+.|.+|+|+|+ +.+||+++.||+|+|||+..+..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 344445555678899999999876542 446678899999999996 57999999999999999986532
Q ss_pred --------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe-ccCCeeEE--EEeCCC-CEEE
Q 009059 340 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQM--RFQPRL-GRIL 406 (545)
Q Consensus 340 --------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~-~~~~v~~l--~~sp~~-~~l~ 406 (545)
+...+.+|...|++++|++++ .|++|+.||+|++||++++.. ...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 124678899999999999863 677999999999999997643 34444 55679998 567776 7889
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCC--CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
+++.|++|+|||++++++...+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|++++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666543 588999999999999988 889999999887 56667888999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-----CCCCeeEEEEeCCCCEE
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLTLSA-----HDKLVSSLAASTVNGMV 532 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-----h~~~V~~l~~spd~~~l 532 (545)
|+|++++|++|+.|++|++||+.......... +...|+.++|+|+++.+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 99999999999999999999986642111111 12257899999999855
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=279.68 Aligned_cols=300 Identities=17% Similarity=0.278 Sum_probs=236.5
Q ss_pred eeeecCCceeeEEEEeecCCCCCeEEEEEcCCC----------CEEEEEeC----CCcEEEEEcC---------------
Q 009059 243 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG----------KLLATGGH----DKKAVLWCTE--------------- 293 (545)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg----------~~latg~~----dg~I~lwd~~--------------- 293 (545)
++|.......+..+.... -.-+..|+.|.|+. .+|++|+. .+.|.++++.
T Consensus 26 ~~wk~n~~~~y~~~~~~~-l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~ 104 (430)
T 2xyi_A 26 KIWKKNTPFLYDLVMTHA-LEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDN 104 (430)
T ss_dssp HHHHHHHHHHEEEEEEEE-CSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC-------------
T ss_pred hhHhhCChHHHHHHhhcC-CCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccc
Confidence 455444443333333221 22356788888865 35777764 3456666532
Q ss_pred -----------CCeE-EEEeccCCccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC---------CeeeeEeccCcccE
Q 009059 294 -----------SFTV-KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTV 351 (545)
Q Consensus 294 -----------~~~~-~~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I~vwd~~~~---------~~~~~~~~~h~~~V 351 (545)
+++. ......|.+.|++++|+|+ +.+|++++.||.|++||+... ...+..+.+|...|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v 184 (430)
T 2xyi_A 105 EKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG 184 (430)
T ss_dssp -------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC
T ss_pred cccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCe
Confidence 1122 2344679999999999997 789999999999999999762 23467888999999
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-------eeEE-eccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCC
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-------~~~~-~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
++++|+|++..+|++|+.||.|++||+..+.. ...+ .+...+.+++|+| ++..|++++.|+.|++||++++
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999876888999999999999987432 2233 3456799999999 6677888899999999999987
Q ss_pred ---EEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEc
Q 009059 423 ---VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC 496 (545)
Q Consensus 423 ---~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~ 496 (545)
..+..+..|...|++++|+|++. +|++++ |+.|++||++... ..+..+..|...|.+++|+|+++ +|++++.
T Consensus 265 ~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 56777888999999999999987 677888 9999999998743 45677888999999999999995 5889999
Q ss_pred CCeEEEEeCCC--------------CeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTE--------------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~--------------~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iWd 545 (545)
|+.|+|||+.. ...+ .+.+|...|++++|+|++. +|++++.||.|+||+
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 99999999977 2333 6678999999999999999 999999999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=278.09 Aligned_cols=273 Identities=18% Similarity=0.360 Sum_probs=221.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++. .+..+.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++
T Consensus 151 ~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-- 223 (435)
T 1p22_A 151 RDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-- 223 (435)
T ss_dssp SSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--
T ss_pred CCCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--
Confidence 46788999988775 45678899999999999 788999999999999999999999999999999999999974
Q ss_pred CEEEEEeCCCeEEEEECCCCCee--eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCee
Q 009059 318 SRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 394 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~ 394 (545)
.+|++|+.||.|++||+.++... ...+.+|...|.+++|. ..++++|+.||.|++||+++++++..+.. ...+.
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 300 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEE
Confidence 59999999999999999876642 26778999999999994 34667999999999999999999988874 45688
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------cc
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GE 467 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~------~~ 467 (545)
++.++ +..+++++.||.|++||+++++.+..+.+|...|.+++| ++.+|++++ ||.|++||+.++.. ..
T Consensus 301 ~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~ 376 (435)
T 1p22_A 301 CLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376 (435)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred EEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccch
Confidence 88885 579999999999999999999999999999999999999 788999999 99999999976531 12
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........+..++.|.
T Consensus 377 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 377 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred heeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 78889999999999999 6778999999999999999887766443444455555554
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=278.18 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=210.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCCee
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 340 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~---------~~~~~ 340 (545)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999998888776 567888899988 9999999999999766 33322
Q ss_pred eeEeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 341 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.....+|...|.+++|+| ++. ++++++.||.|++||++++++..... +...+.+++|+|++..+++++.||.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 764 56699999999999999998876653 3346999999999999999999999999
Q ss_pred EECCCCEEE-EEecC-CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCce--EEEEEcCCCCEEE
Q 009059 417 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 492 (545)
Q Consensus 417 ~d~~~~~~~-~~~~~-h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v--~~~~~sp~~~~l~ 492 (545)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++++|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77888 9999999999999999999997799999999875433232222233333 4699999999999
Q ss_pred EEEc-CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeC---CCCEEEEEeCCCcEEEc
Q 009059 493 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 544 (545)
Q Consensus 493 ~~~~-dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp---d~~~las~s~Dg~I~iW 544 (545)
+++. ++.|++|++...... .. .++..+.|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999998655322 22 4567777887 77788888888887765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-30 Score=263.50 Aligned_cols=262 Identities=11% Similarity=0.128 Sum_probs=223.2
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 4678889999999999999999999887754 8999999999977 6677899999999988764 55665444 89999
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE-EEEECCCeEEEEECCCCEEEEEecCCCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999888888888899999999999999999888889999999999888 45566999999999999998888755 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE---cCCeEEEEeCCCC
Q 009059 434 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 508 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~-s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~---~dg~I~iwd~~~~ 508 (545)
.+.+++|+|++++|+ ++. ++.|++||++++ .++..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 555 789999999876 5555554 466889999999999999988 6889999999999
Q ss_pred eEEEeccCCCCeeEEEEeCCCCEE-EEEeCCCcEEEcC
Q 009059 509 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 545 (545)
Q Consensus 509 ~~~~~~~h~~~V~~l~~spd~~~l-as~s~Dg~I~iWd 545 (545)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887433334568999999999977 6778899999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=277.57 Aligned_cols=252 Identities=19% Similarity=0.366 Sum_probs=218.6
Q ss_pred EeecCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------CeEEEEeccCCccEEEEEEcCCCC-EEEEEe
Q 009059 257 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 324 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~----------~~~~~~l~~h~~~V~~l~~sp~~~-~l~t~s 324 (545)
....+|.+.|++++|+|+ +.+||+++.||.|+||++.. .+.+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 78999999999999999986 677888899999999999999988 999999
Q ss_pred CCCeEEEEECCCCCe------eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC---ceeeEE-eccCCee
Q 009059 325 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVF-KCQSGAT 394 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~---~~~~~~-~~~~~v~ 394 (545)
.||.|++||+..... ....+.+|...|.+++|+|++..+|++++.||.|++||++++ ..+..+ .+...+.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987332 135677899999999999977788889999999999999987 455555 4557799
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCC-CEEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCC-----
Q 009059 395 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 465 (545)
Q Consensus 395 ~l~~sp~~~-~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~----- 465 (545)
+++|+|++. .+++++.||.|++||+++ ...+..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 577899999999999998 567788889999999999999985 677777 99999999987321
Q ss_pred ------cceEEEEeeCCCceEEEEEcCCCC-EEEEEEcCCeEEEEeCCCC
Q 009059 466 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 466 ------~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~ 508 (545)
...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777888899999999999999 8999999999999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=265.26 Aligned_cols=262 Identities=11% Similarity=0.110 Sum_probs=204.8
Q ss_pred ccceeeeeecCCcee-----e--EEEEeecCCCCCeEEEEEcCCCCEEEEEe-----------CCCcEEEEEcCCCeEE-
Q 009059 238 RDRVGRSAEVGKGFT-----F--TEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK- 298 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~-----~--~~~~~l~~H~~~V~~l~~spdg~~latg~-----------~dg~I~lwd~~~~~~~- 298 (545)
.+..+++|++..+.. + .....+.+|...|.+++++ ++.+++|. .|+.+++|++......
T Consensus 41 i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~ 118 (365)
T 4h5i_A 41 IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL 118 (365)
T ss_dssp CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence 345678888765421 1 1223577899999998875 45676653 4778999997654321
Q ss_pred ---EEe-----ccCCccEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc
Q 009059 299 ---STL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 299 ---~~l-----~~h~~~V~~l~~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+. |...|.+++|+|++. ++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~~-~~~~V~~v~fspdg~-~l~s~s 195 (365)
T 4h5i_A 119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEIE-TRGEVKDLHFSTDGK-VVAYIT 195 (365)
T ss_dssp EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSS-EEEEEC
T ss_pred EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEeC-CCCceEEEEEccCCc-eEEecc
Confidence 111 23556799999999999987654 689999999998764 55554 778899999999986 555777
Q ss_pred CCCcEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECCCCEE----EEEecCCCCCEEE
Q 009059 369 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHS 437 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~~~~~----~~~~~~h~~~I~~ 437 (545)
++.+++|+..++..+.... +...+.+++|+|++..+++++.++ .+++|++..... ...+.+|...|++
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 5567778877777654432 334589999999999999998877 688899877643 3567789999999
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 438 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 438 l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
++|+|+|++||+|+ |+.|+|||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+..+
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999 999999999887 777775 689999999999999999999999999999999654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=299.68 Aligned_cols=252 Identities=20% Similarity=0.319 Sum_probs=213.8
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEcCC--CCEEEEEeCCCeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~sp~--~~~l~t~s~dg~I~v 331 (545)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35688999999999999999999999999999999998 56778889999999999999987 999999999999999
Q ss_pred EECCCCCe-eeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCCceee---EEeccCCeeEEEEeC------
Q 009059 332 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP------ 400 (545)
Q Consensus 332 wd~~~~~~-~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~~~~~---~~~~~~~v~~l~~sp------ 400 (545)
||+.++.. .+..+.+|...|.+++|+|+. ..++++|+.||.|++||++++.... ...+...+.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 99998652 467788899999999999982 3466699999999999998874332 234556799999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----EEEEEecCCCCCEEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCC
Q 009059 401 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 401 -------~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h~~~I~~l~~sp~---g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ |+.|++||+.++..
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 4889999999999999999876 667788899999999999999 89999999 99999999988632
Q ss_pred c--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 466 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 466 ~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 1 12223345778899999999999999999999999999874
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-29 Score=257.51 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=223.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+++|+..++... ..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|+
T Consensus 10 ~d~~v~v~d~~~~~~~---~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spd 84 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVT---ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPD 84 (391)
T ss_dssp TTTEEEEEETTTTEEE---EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTT
T ss_pred CCCEEEEEECCCCeEE---EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCC
Confidence 4578999999888643 4455664 49999999999977 667789999999999999998887665 8999999999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 317 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 317 ~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
+++|+++ +.++.|++||+.+++. +..+.. ...+.+++|+|+++.++++++.++.|++||+.+++.+..+..+..+..
T Consensus 85 g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 162 (391)
T 1l0q_A 85 GKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence 9988655 4679999999998764 555554 457899999999988878999999999999999999999988888999
Q ss_pred EEEeCCCCEEE-EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEE
Q 009059 396 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 396 l~~sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~ 470 (545)
++|+|+++.++ ++..++.|++||+++++.+..+. +...+.+++|+|++++|++++ ++.|++||+.++ ..+.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~ 238 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEE
Confidence 99999998885 45568999999999998887776 567899999999999888775 679999999877 5666
Q ss_pred EEeeCCCceEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCeEE-EeccCCC
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHDK 518 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~~-~~~~h~~ 518 (545)
.+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++.+ .+..|..
T Consensus 239 ~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 239 RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 66654 4578999999999885 5567889999999999887 4444443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=274.96 Aligned_cols=262 Identities=14% Similarity=0.251 Sum_probs=212.5
Q ss_pred ccceeeeeecCCce--------eeEEEEeecCCC------------CCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGF--------TFTEFQLIPAST------------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESF 295 (545)
Q Consensus 238 ~d~~~~~~~~~~~~--------~~~~~~~l~~H~------------~~V~~l~~spdg--~~latg~~dg~I~lwd~~~~ 295 (545)
.|..+++|+..++. .+..+..+.+|. +.|++++|+|++ .+|++++.|+.|++||+.++
T Consensus 48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 35677788777554 344677888998 899999999998 79999999999999998764
Q ss_pred eEE---------------------------------------EE-eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 296 TVK---------------------------------------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 296 ~~~---------------------------------------~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
+.. .. ..+|...|.+++|+|++++|++| .|+.|++||+.
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 206 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLE 206 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETT
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECC
Confidence 432 12 46899999999999999999999 89999999998
Q ss_pred CCCeeee-------EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce----eeEEeccC-------------
Q 009059 336 NPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQS------------- 391 (545)
Q Consensus 336 ~~~~~~~-------~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~----~~~~~~~~------------- 391 (545)
.....+. .+.+|...|.+++|+|++..++++|+.||.|++||+++++. +..+..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (447)
T 3dw8_B 207 ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIIS 286 (447)
T ss_dssp EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTT
T ss_pred CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCc
Confidence 5444344 35689999999999999867788999999999999999886 56666543
Q ss_pred CeeEEEEeCCCCEEEEEECCCeEEEEECCC-CEEEEEecCCCCC---------------EEEEEEcCCCCEEEEEe-CCc
Q 009059 392 GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVCWNTSGEYLASVS-DEL 454 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~-~~~~~~~~~h~~~---------------I~~l~~sp~g~~l~s~s-dg~ 454 (545)
.+.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++|+|++.+|++++ |+.
T Consensus 287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~ 365 (447)
T 3dw8_B 287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNF 365 (447)
T ss_dssp CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTE
T ss_pred eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCE
Confidence 7999999999999999988 9999999997 7888888877532 33499999999999999 999
Q ss_pred EEEEEcCCCCCcceEEEEe---------------------------------eCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 455 VRVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~---------------------------------~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
|++||+.++. .+ .+. .....|..++|+|++.+|++++.++ ++
T Consensus 366 v~iwd~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~ 440 (447)
T 3dw8_B 366 FRMFDRNTKR---DI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY 440 (447)
T ss_dssp EEEEETTTCC---EE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred EEEEEcCCCc---ce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence 9999998863 22 211 1235688999999999888777765 88
Q ss_pred EEeCC
Q 009059 502 LWNMT 506 (545)
Q Consensus 502 iwd~~ 506 (545)
+|..+
T Consensus 441 ~~~~~ 445 (447)
T 3dw8_B 441 IFQDK 445 (447)
T ss_dssp EEECC
T ss_pred eeccc
Confidence 88654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=282.34 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=204.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc-----cEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~-----~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
.|...|.+|+|||||++||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCe------eeeEe----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee---eEEe--ccCCeeEEEEeC
Q 009059 336 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 400 (545)
Q Consensus 336 ~~~~------~~~~~----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~---~~~~--~~~~v~~l~~sp 400 (545)
++.. .+.++ .+|...|.+++|+|++ +++++.|+.|++||+.++... .++. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8652 34565 6788899999999997 457777999999999887743 3453 34679999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEE--cCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 401 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 401 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~--sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
+..+++++ ++.|++||+.+++......+|...|..+.| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57777776 799999999998885444479999999999 99999999999 889 999975
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
.+.++|++..++.. |+++++|+...+....+ .+...|.+++|+|||+.+|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEEEEEe
Confidence 15689999766554 88999999876654333 34677999999999999999874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=260.96 Aligned_cols=255 Identities=13% Similarity=0.112 Sum_probs=218.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc-CCCeEEEEecc--CCccEEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRF 313 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~-~~~~~~~~l~~--h~~~V~~l~~ 313 (545)
.|..+++|+...+........+.+|...|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|
T Consensus 31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~ 109 (342)
T 1yfq_A 31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK 109 (342)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence 356788999887764445566679999999999999999 9999999999999999 87655 67788 9999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC---------CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-Cce
Q 009059 314 SPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC 383 (545)
Q Consensus 314 sp~~~~l~t~s~dg~I~vwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~ 383 (545)
+| +.+|++++.|+.|++||+.+ ... +..+. |...|.+++|+|++ +++++.|+.|++||+++ +..
T Consensus 110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC
T ss_pred CC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc
Confidence 99 99999999999999999886 442 44555 88999999999875 66888999999999998 553
Q ss_pred e---eEEeccCCeeEEEEeC-CCCEEEEEECCCeEEEEECCCC------EEEEEecCCCC---------CEEEEEEcCCC
Q 009059 384 A---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSG 444 (545)
Q Consensus 384 ~---~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~---------~I~~l~~sp~g 444 (545)
. ....+...+.+++|+| ++..+++++.||.|++|+++.. +....+..|.. .|.+++|+|++
T Consensus 184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence 2 2223456799999999 9999999999999999999876 67777877765 99999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEcCCe-EEEEe
Q 009059 445 EYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET-LELWN 504 (545)
Q Consensus 445 ~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~-I~iwd 504 (545)
++|++++ |+.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+. .+.|.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999 999999999887 778888888 99999999 99999999999998 54444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=291.85 Aligned_cols=248 Identities=21% Similarity=0.367 Sum_probs=210.1
Q ss_pred EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-eeeeEeccCcccEEEEEEeCCC-CcEEEEEcCCCcEEE
Q 009059 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRY 375 (545)
Q Consensus 298 ~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~-~~~~~~~~h~~~V~~l~~~p~~-~~ll~s~s~dg~I~l 375 (545)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|.+.|++++|+|+. ..++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999997432 3467888999999999999872 356679999999999
Q ss_pred EECCCCc--eeeEEe-ccCCeeEEEEeCC--CCEEEEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcC------
Q 009059 376 WSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------ 442 (545)
Q Consensus 376 wd~~~~~--~~~~~~-~~~~v~~l~~sp~--~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp------ 442 (545)
||+.+++ .+..+. +...+.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 444443 5567999999999 899999999999999999877 34456778999999999999
Q ss_pred -------CCCEEEEEe-CCcEEEEEcCCCCCc-ceEEEEeeCCCceEEEEEcCC---CCEEEEEEcCCeEEEEeCCCCe-
Q 009059 443 -------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK- 509 (545)
Q Consensus 443 -------~g~~l~s~s-dg~I~vwd~~~~~~~-~~i~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~I~iwd~~~~~- 509 (545)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998863
Q ss_pred -----EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 -----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 -----~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
......|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 223446889999999999999999999999999996
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=269.47 Aligned_cols=259 Identities=15% Similarity=0.116 Sum_probs=177.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEEcC--------CCCEEEEEeC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSP--------SLSRLATSSA 325 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~sp--------~~~~l~t~s~ 325 (545)
...|...+....+++++.+||+++.|++|+|||..+++.. ..+.+|.+.|++|+|+| ++++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3456666667777778889999999999999999887654 34689999999999997 7899999999
Q ss_pred CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-e--eEEEEeCCC
Q 009059 326 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-A--TQMRFQPRL 402 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v--~~l~~sp~~ 402 (545)
|++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++.......... . ..+.+..
T Consensus 165 D~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~-- 241 (393)
T 4gq1_A 165 DCTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT-- 241 (393)
T ss_dssp TSEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES--
T ss_pred CCeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc--
Confidence 99999999987664 6667778899999999999888888999999999999998876554432111 1 1111111
Q ss_pred CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc-CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 403 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s-p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
..........+|...+.++.|+ ++++.|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 242 -----------------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~ 301 (393)
T 4gq1_A 242 -----------------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLG 301 (393)
T ss_dssp -----------------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred -----------------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccc
Confidence 1111122345688899999987 7999999999 99999999987632 222222222222
Q ss_pred E------------------EEEcC--CCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 481 S------------------CVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 481 ~------------------~~~sp--~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
. +.|++ ++.++++++.|+.|++||+.+++.. .+..|...|.+++|+|||++||+++.||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 302 PKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp --CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred cEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 2 23333 2335566677999999999988776 6678999999999999999999999888
Q ss_pred c
Q 009059 540 C 540 (545)
Q Consensus 540 ~ 540 (545)
.
T Consensus 382 v 382 (393)
T 4gq1_A 382 V 382 (393)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=255.56 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=203.2
Q ss_pred cCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcC--CCeEEEEec--cCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 260 PASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~--~~~~~~~l~--~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
.+|.+.|++++|+|++++| |+|+.||.|+|||+. +++.+..+. .|...|.+++|+|++++|++++.||.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4677789999999999996 899999999999999 888888776 56789999999999999999999999999999
Q ss_pred CCCCe---eeeEeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEE
Q 009059 335 ENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 335 ~~~~~---~~~~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~ 407 (545)
.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...+.+++|+ ++.+|++
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s 257 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS 257 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence 87653 22367789999999999998 23566699999999999999998887643 56779999999 9999999
Q ss_pred EECCCeEEEEECCCCEEEEEecC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 408 AAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~-------------------------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
++.|+.|++||+++++.+..+.. ....|.+++|+|++++|++++ ++.|++|++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999999988887752 245799999999999999887 779999999
Q ss_pred --CCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------CCeEEEEeCC
Q 009059 461 --GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 506 (545)
Q Consensus 461 --~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-------dg~I~iwd~~ 506 (545)
..+.....+..+..+ ..|.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 544444667777776 889999999954 4444433 3457777653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.40 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=198.8
Q ss_pred ccceeeeeecCCce-eeEEEEeecCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC---------eEEEEeccCC
Q 009059 238 RDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHT 305 (545)
Q Consensus 238 ~d~~~~~~~~~~~~-~~~~~~~l~~H~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~~---------~~~~~l~~h~ 305 (545)
.|..+++|+..++. .+..+..+.+|...|++++|+| |+++|++|+.||.|++||+.++ +.+..+..|.
T Consensus 31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 110 (351)
T 3f3f_A 31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK 110 (351)
T ss_dssp TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence 46788999988653 4456788899999999999999 6999999999999999999887 6678889999
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeeEe-------------ccCcccEEEEEEeCC--CCcEEEEEc
Q 009059 306 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTF-------------TGHSTTVMSLDFHPS--KEDLLCSCD 368 (545)
Q Consensus 306 ~~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~~~-------------~~h~~~V~~l~~~p~--~~~ll~s~s 368 (545)
..|.+++|+|+ +.+|++++.||.|++||+.++.. +..+ ..|...+.+++|+|+ ...++++++
T Consensus 111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 189 (351)
T 3f3f_A 111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE
T ss_pred CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec
Confidence 99999999999 99999999999999999987653 2221 267889999999997 345677888
Q ss_pred CCCcEEEEECCCCce--eeEEe-ccCCeeEEEEeCCC----CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc
Q 009059 369 NNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 441 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~--~~~~~-~~~~v~~l~~sp~~----~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s 441 (545)
.++.+.+|+...+.. +..+. +...+.+++|+|++ ..|++++.||.|++||++++........+...+....+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 269 (351)
T 3f3f_A 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNS 269 (351)
T ss_dssp TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------
T ss_pred CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCC
Confidence 899998888887765 33333 45679999999998 789999999999999998876555544444455555555
Q ss_pred CCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 442 TSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 442 p~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+....++.+. ++ ....+.+........+..+..|...|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 270 ADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ---------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred cccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 5555555544 22 2333333222333778888899999999999999999999999999999999887544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=252.01 Aligned_cols=252 Identities=11% Similarity=0.167 Sum_probs=207.8
Q ss_pred EEEcCCCeEEEEeccCCccEEEEEEcCC---CCEEEEEeCCCeEEEEECCC-CCeeeeEeccCcccEEEEEEeCCCCcEE
Q 009059 289 LWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLL 364 (545)
Q Consensus 289 lwd~~~~~~~~~l~~h~~~V~~l~~sp~---~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~ll 364 (545)
.|+....+.+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+ +......+.+|...|.+++|+|++. +|
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l 101 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-KV 101 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-EE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-EE
Confidence 3455677788889999999999999998 59999999999999999997 4443478889999999999999875 55
Q ss_pred EEEcCCCcEEEEECCCCceeeEEeccCCeeEEEE--eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcC
Q 009059 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF--QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442 (545)
Q Consensus 365 ~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp 442 (545)
++++.||.|++||+.+++.+....+...+.+++| ++++..+++++.|+.|++||+++++.+..+..+. .+.++.+.+
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred EEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence 5899999999999999999988888899999999 8898899999999999999999998888888654 677777764
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE----EEEEEcCCeEEEEeCCCCeE----EEe
Q 009059 443 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS----LLVIGCYETLELWNMTENKT----LTL 513 (545)
Q Consensus 443 ~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~----l~~~~~dg~I~iwd~~~~~~----~~~ 513 (545)
..++++. ++.+++|++..... ............+.++.+.++... +++++.++.|++||+..... ..+
T Consensus 181 --~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 181 --PMAVVATAERGLIVYQLENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp --TEEEEEEGGGCEEEEECSSSCE-EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred --CeeEEEeCCCcEEEEEeccccc-hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 3566665 99999999987532 111112233455666777666554 99999999999999988632 256
Q ss_pred ccCCC------------CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 514 SAHDK------------LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 514 ~~h~~------------~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 66665 799999999999999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=253.63 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=187.8
Q ss_pred EEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc
Q 009059 289 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 289 lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
||++.+.+.+..+..|...|++++|+|++++|++|+.++ ++||++..... ..... ...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQE--MRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEEE--CSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeeee--cCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999886543 22222 224778888888877777888
Q ss_pred CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC-EEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 369 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
.|+.|++||+.+++++..+.+...+.++.|+++ .+ +.+.++.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999886 23 3345899999999987 55554443 444566667 666
Q ss_pred EEE--e-CCcEEEEEcCCCCCc------------c-eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCe-EEEEeCCCCeE
Q 009059 448 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 510 (545)
Q Consensus 448 ~s~--s-dg~I~vwd~~~~~~~------------~-~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~ 510 (545)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 899999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 511 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 511 ~-~~~-~-h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 8 555 4 999999999999999999999999999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=239.69 Aligned_cols=259 Identities=13% Similarity=0.063 Sum_probs=192.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC--
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-- 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~-- 316 (545)
+..+++|+..++..++.+.++.+|..+|..+.|.||..-|++..- | .-+...|..|+|+|+
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~sla~spd~~ 124 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-G----------------NLEIREIRALFCSSDDE 124 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-C----------------SSSEEEEEEECC-----
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-c----------------cccccceEEEEECCCcc
Confidence 467899999999999999999999999999999998654443321 1 124567899999999
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc--CCCcEEEEEC-CCCceeeEEe-cc
Q 009059 317 --LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK-CQ 390 (545)
Q Consensus 317 --~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~-~~~~~~~~~~-~~ 390 (545)
+.++++++.+ +++|++.+++ ++.++. .|+.|++|++ .+++.+..+. +.
T Consensus 125 ~~~~~l~s~g~~--~~v~~l~~g~------------------------lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 125 SEKQVLLKSGNI--KAVLGLTKRR------------------------LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp -CCEEEEEEEEE--EEEEEETTTE------------------------EEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ccccEEEeCCCe--EEEEecCCCc------------------------EEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 8899998744 7778654332 332322 3556666666 2344444333 34
Q ss_pred CCeeEEEEeC---CCCEEEEEECCCeEEEEECCCCEEEEEecCCC---CCEEEEEEcCCCCEE------------EEEe-
Q 009059 391 SGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS- 451 (545)
Q Consensus 391 ~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~---~~I~~l~~sp~g~~l------------~s~s- 451 (545)
..+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 5678888888 77899999999999999999999999998754 367788999999887 4466
Q ss_pred CCcEEEEEcCCCCCcceEEEE-----eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCee-EEE
Q 009059 452 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLA 524 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~i~~~-----~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~-~l~ 524 (545)
|++|++||..++ .++..+ .+|...+.+..++ +.++++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus 259 D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 259 VFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 789999999887 555443 2444444444443 778999999999999999999988 7778887655 689
Q ss_pred EeCCCCEEEEEeCCCcEEEcC
Q 009059 525 ASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 525 ~spd~~~las~s~Dg~I~iWd 545 (545)
|+|||++|++|+.|++|||||
T Consensus 334 fSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEec
Confidence 999999999999999999997
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-27 Score=253.11 Aligned_cols=301 Identities=10% Similarity=0.059 Sum_probs=244.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCeEEEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~--~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
.+..+.+||..++... .++..+.. +.+++|+|||++|++++.|+.|++||+ .+++.+.++.. ...+..++|+|
T Consensus 157 ~d~~V~v~D~~t~~~~---~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp 231 (543)
T 1nir_A 157 DAGQIALVDGDSKKIV---KVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSK 231 (543)
T ss_dssp GGTEEEEEETTTCCEE---EEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECC
T ss_pred CCCeEEEEECCCceEE---EEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCC
Confidence 3567889998887654 44553323 899999999999999999999999999 88998888874 45689999999
Q ss_pred ----CCCEEEEEeC-CCeEEEEECCCCCeeeeEecc----------Cc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 316 ----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 316 ----~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~----------h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
++++|++++. +++|.|||..+.+. +..+.. |. ..+.++.++|++..++++...++.|.+||+.
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 9999999885 89999999988764 555543 22 3789999999999999999999999999998
Q ss_pred CCceee--EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCC-CCEEEEEe
Q 009059 380 NGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVCWNTS-GEYLASVS 451 (545)
Q Consensus 380 ~~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~-g~~l~s~s 451 (545)
+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+.. |.+....+ ++|+ +.+++++.
T Consensus 311 ~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 311 DIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp TSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 876554 4555566888999999998887765 89999999999999888764 55444444 4676 66777764
Q ss_pred --CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEE-------cCCeEEEEeCCCCeEE-Ee----
Q 009059 452 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG-------CYETLELWNMTENKTL-TL---- 513 (545)
Q Consensus 452 --dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-------~dg~I~iwd~~~~~~~-~~---- 513 (545)
|++|.+||+.+... .+++.++..+...+..+.++|++++|+++. .+++|.+||+.+++.. ..
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~ 469 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 469 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech
Confidence 78999999987322 588999999988899999999999999987 2679999999988765 32
Q ss_pred -----ccCCCCeeEEEEeCCCCEEEEEe-----CCCcEEEcC
Q 009059 514 -----SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 545 (545)
Q Consensus 514 -----~~h~~~V~~l~~spd~~~las~s-----~Dg~I~iWd 545 (545)
..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 35678899999999999888763 479999997
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=244.62 Aligned_cols=262 Identities=11% Similarity=0.117 Sum_probs=221.1
Q ss_pred cceeeeeecCCceeeEEEE--eecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 239 DRVGRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~--~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+..+++|+..++.....+. .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|+
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 4568999998886543322 45689999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-------CCCcEEEEECCCCceeeEEe
Q 009059 317 LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-------NNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 317 ~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-------~dg~I~lwd~~~~~~~~~~~ 388 (545)
++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..+++++. .|+.|++||+.+++.+..+.
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~ 300 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG 300 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc
Confidence 99886554 799999999987654 555554 456999999999876664443 58899999999999888887
Q ss_pred ccCCeeEEEEeCCCCEEEEE-ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C--------------
Q 009059 389 CQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-------------- 452 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-------------- 452 (545)
+...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ +
T Consensus 301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence 77789999999998876555 679999999999998888776 778899999999999888877 2
Q ss_pred -CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCC
Q 009059 453 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 507 (545)
Q Consensus 453 -g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~ 507 (545)
|.|++||+.++ ..+..+.. ...+..++|+|++++|++++. ++.|++|+++.
T Consensus 380 dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 380 LGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 48999999876 55666654 567999999999999998886 89999999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=245.84 Aligned_cols=283 Identities=12% Similarity=0.073 Sum_probs=230.4
Q ss_pred ccceeeeeec--CCceeeEEEEeecCCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCC
Q 009059 238 RDRVGRSAEV--GKGFTFTEFQLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESF 295 (545)
Q Consensus 238 ~d~~~~~~~~--~~~~~~~~~~~l~~H~~~V~~l~~sp--------------dg~~latg~~d------g~I~lwd~~~~ 295 (545)
.+..+++||+ .++..+. -..+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 91 ~~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g- 168 (415)
T 2hqs_A 91 YNVAYQLVDTGGAPGTVLA-QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG- 168 (415)
T ss_dssp EEEEEEEEECSSSTTCEEE-EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-
T ss_pred EEEEEEEEeCCCCCCCEEe-eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-
Confidence 4558999999 8886432 245788988888888775 15566666554 7999999974
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
.....+..|...|.+++|+|++++|++++.++ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 55677778999999999999999999999885 999999998764 4566788899999999999888878876654
Q ss_pred --EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 373 --IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 373 --I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
|++||+.+++......+...+.+++|+|++..|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|
T Consensus 247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l 325 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM 325 (415)
T ss_dssp CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence 99999998887655555667899999999999988886 44 788889988764 3455577789999999999999
Q ss_pred EEEe-C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeEEEeccCCCCe
Q 009059 448 ASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLV 520 (545)
Q Consensus 448 ~s~s-d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V 520 (545)
++++ + ..|++||+.++. . ..+..+. .+.+++|+|++++|++++.++ .|++||+.++....+..|.+.|
T Consensus 326 ~~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 326 VMVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 400 (415)
T ss_dssp EEEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred EEEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCC
Confidence 9887 4 389999998763 2 3344443 899999999999999998877 8999999988877899999999
Q ss_pred eEEEEeCCCC
Q 009059 521 SSLAASTVNG 530 (545)
Q Consensus 521 ~~l~~spd~~ 530 (545)
.+++|+|...
T Consensus 401 ~~~~~~~~~~ 410 (415)
T 2hqs_A 401 KFPAWSPYLH 410 (415)
T ss_dssp EEEEECCCCC
T ss_pred cCCccccccc
Confidence 9999999653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=239.65 Aligned_cols=253 Identities=11% Similarity=0.102 Sum_probs=196.7
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---------CCeEEEEec-cCCc
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVKSTLE-EHTQ 306 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~---------~~~~~~~l~-~h~~ 306 (545)
+.|..+++|+..++.....+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+. +|..
T Consensus 55 ~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (343)
T 3lrv_A 55 CEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN 126 (343)
T ss_dssp EETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred CCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence 457789999998887655544 466888899988 9999999999999765 444444443 6778
Q ss_pred cEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 307 WITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 307 ~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
.|.+++|+| ++++|++++.||+|++||++++.. +..+ ..|...|.+++|+|++ .++++|+.||.|++||+++++.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS
T ss_pred CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC
Confidence 999999999 999999999999999999998775 4444 4456689999999996 4666999999999999999987
Q ss_pred e-eEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC---CCCCE--EEEEEcCCCCEEEEEe--CC
Q 009059 384 A-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQV--HSVCWNTSGEYLASVS--DE 453 (545)
Q Consensus 384 ~-~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~I--~~l~~sp~g~~l~s~s--dg 453 (545)
+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |...+ .+++|+|+|++|++++ |+
T Consensus 205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC
Confidence 7 55554 67899999999999999988 55999999998866544433 33344 3699999999999966 78
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC---CCCEEEEEEcCCeEEEEeCCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~I~iwd~~~ 507 (545)
.|++|++...... .. . ..+..+.|.+ +...+++++.|+.+.++-...
T Consensus 284 ~i~v~~~~~~~~~--~~-~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 284 SLTIYKFDKKTKN--WT-K----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEEECTTTCS--EE-E----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cEEEEEEcccccc--eE-e----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999999765321 11 1 4567788888 888999999999888875443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=240.33 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=217.3
Q ss_pred CeEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCeEE--EEeccCCccEEEEEEcC--------------CC
Q 009059 265 KVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------SL 317 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg~----~dg----~I~lwd~--~~~~~~--~~l~~h~~~V~~l~~sp--------------~~ 317 (545)
.|...+|.+.|. ++++|+ .+| .|+|||+ .+++.+ ..+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 466677877665 566776 467 8999999 888877 55888888888877764 15
Q ss_pred CEEEEEeCC------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC---CcEEEEECCCCceeeEEe
Q 009059 318 SRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 318 ~~l~t~s~d------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g~I~lwd~~~~~~~~~~~ 388 (545)
..++.++.+ +.|++||+... ..+.+.+|...+.+++|+|++..++ +++.+ ..|++||+.++++.....
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEeec
Confidence 666666654 79999999743 2677788999999999999987666 55545 499999999998876666
Q ss_pred ccCCeeEEEEeCCCCEEEEE-ECCC--eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcC
Q 009059 389 CQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIG 461 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~-~~dg--~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~ 461 (545)
+...+.+++|+|++..|+.. +.++ .|++||+.+++. ..+..|...+.+++|+|+|++|++++ ++ .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 66779999999999988844 4454 599999998876 56777888999999999999988877 34 68888987
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
++. ...+..+...+..++|+|++++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.|
T Consensus 300 ~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 300 GGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp SSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred CCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence 763 23344566788999999999999988875 48999999999887776665 89999999999999998887
Q ss_pred C---cEEEcC
Q 009059 539 K---CVKIWK 545 (545)
Q Consensus 539 g---~I~iWd 545 (545)
+ .|++||
T Consensus 375 ~~~~~l~~~d 384 (415)
T 2hqs_A 375 GMGSVLNLVS 384 (415)
T ss_dssp TTEEEEEEEE
T ss_pred CCccEEEEEE
Confidence 7 688875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=240.50 Aligned_cols=224 Identities=11% Similarity=0.096 Sum_probs=172.0
Q ss_pred cccceeeeeecCCceee--EEEEeecCCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc
Q 009059 237 PRDRVGRSAEVGKGFTF--TEFQLIPASTSKVESCHFSP--------DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 306 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~--~~~~~l~~H~~~V~~l~~sp--------dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~ 306 (545)
+.|..+|+|+...+... ..+..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++..+..+..|..
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~ 187 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS 187 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS
T ss_pred eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC
Confidence 45788999998887543 34567899999999999998 889999999999999999999888888889999
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeee------------------------eEeccCcccEEEEEEe-CCC
Q 009059 307 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL------------------------RTFTGHSTTVMSLDFH-PSK 360 (545)
Q Consensus 307 ~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~------------------------~~~~~h~~~V~~l~~~-p~~ 360 (545)
.|.+++|+|++. +|++++.|++|++||+.++.... ....+|...|.++.|. +++
T Consensus 188 ~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg 267 (393)
T 4gq1_A 188 PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG 267 (393)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTT
T ss_pred CcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCC
Confidence 999999999874 89999999999999998764311 1124677889999997 565
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEecc-------------------CCeeEEEEeC-CCCEEE-EEECCCeEEEEEC
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQP-RLGRIL-AAAIENYISILDV 419 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-------------------~~v~~l~~sp-~~~~l~-~~~~dg~I~i~d~ 419 (545)
..+++++.|+.+++||+..+.....+... .......+.+ .++.++ +++.||.|++||+
T Consensus 268 -~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 268 -SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp -CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred -CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 45669999999999999876654433211 1122233444 344444 4556999999999
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcC
Q 009059 420 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 461 (545)
Q Consensus 420 ~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~ 461 (545)
.++.....+..|...|.+++|+|+|++||+++++.+.+|.+.
T Consensus 347 ~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 347 YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp TCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 999888888889999999999999999999998878888764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=219.47 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=164.1
Q ss_pred EEeecCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCCeEE
Q 009059 256 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVR 330 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spd----g~~latg~~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~ 330 (545)
+..=.-|.+.|.+++|+|| +.++++++.+ +.+|++.+++.+.. ..+| |+.|+
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~---------------------d~~V~ 160 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLS---------------------DQQVE 160 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSST---------------------TCEEE
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCC---------------------CCcEE
Confidence 3333446668999999999 9999998854 77887654444433 2333 55566
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCCCceeeEEecc----CCeeEEEEeCCCCE
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGR 404 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~----~~v~~l~~sp~~~~ 404 (545)
+|++......+..+.+|...+..++|++ ....+|++++.|++|++||+.++++++++..+ ..+.+++|+|++..
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 6665332223455667888888888887 23467779999999999999999999999732 24677899999877
Q ss_pred E------------EEEECCCeEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc
Q 009059 405 I------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466 (545)
Q Consensus 405 l------------~~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~ 466 (545)
+ ++++.|++|++||..+++.+..+ .+|...+.+..++ +.++++++ |++|+|||+.++
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG--- 315 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG--- 315 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC---
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC---
Confidence 6 34667899999999999887765 3676666555554 88899998 999999999988
Q ss_pred ceEEEEeeCCCceE-EEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 467 ECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 467 ~~i~~~~~~~~~v~-~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+++.++.+|...+. .++|+|++++|++|+.|++|+|||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88899988877655 5899999999999999999999995
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-24 Score=215.38 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=216.2
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECC
Q 009059 264 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 335 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~-------dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~ 335 (545)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45788999999999888874 568999999999988887643 447889999999966555 557999999999
Q ss_pred CCCeeeeEeccCcc---------cEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCE
Q 009059 336 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 404 (545)
Q Consensus 336 ~~~~~~~~~~~h~~---------~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~ 404 (545)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8775 455544332 278999999998777666 458899999999999988887 4455889999999999
Q ss_pred EEEEECCCeEEEEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 405 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 405 l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
++++..++.|.+||+.+++.+..+.. +...+..++|+|++++++++. ++.|.+||+.++ ..+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877664 556788999999999877776 579999999887 4455554333
Q ss_pred eEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 479 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 35689999999877777 5789999999999988544455678999999999977766654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=236.39 Aligned_cols=268 Identities=9% Similarity=0.060 Sum_probs=215.1
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCCeeeeEeccC
Q 009059 270 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 347 (545)
Q Consensus 270 ~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~--~~~~~~~~~~~~h 347 (545)
+|+|++.++++++.|+.|.+||..+++++.++..+.. +.+++|+|++++|++++.|++|++||+ .+.+. +..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-VAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-EEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-EEEEe-c
Confidence 4789999999999999999999999999999874433 899999999999999999999999999 66553 56666 4
Q ss_pred cccEEEEEEeC----CCCcEEEEEcCCCcEEEEECCCCceeeEEecc------------CCeeEEEEeCCCCEEEEEE-C
Q 009059 348 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 410 (545)
Q Consensus 348 ~~~V~~l~~~p----~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~~~~-~ 410 (545)
...+..++|+| +++.+++++..+++|.+||..+++++..+... ..+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 55689999999 98877766667899999999999998887642 2578999999877766555 5
Q ss_pred CCeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee----CCCceEEE
Q 009059 411 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 482 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~ 482 (545)
++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7999999998754322 343 567788999999999877665 789999999987 66666653 43333333
Q ss_pred EEcCCCCEEEEEE--cCCeEEEEeCCC-------CeEE-EeccCCCCeeEEEEeCCCCEEEEEe-------CCCcEEEcC
Q 009059 483 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 545 (545)
Q Consensus 483 ~~sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spd~~~las~s-------~Dg~I~iWd 545 (545)
++|++..+++.+ .+++|.+||+.+ ++++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444443 478999999988 7777 7778888899999999999999987 277999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=216.45 Aligned_cols=274 Identities=7% Similarity=0.133 Sum_probs=206.2
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEecc
Q 009059 269 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 269 l~~spdg~~-latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~ 346 (545)
..|.+++++ +++++.++.|.+||..+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345565554 6777889999999999999988887777777 9999999997776665 889999999987653556666
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCC-C--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCe-EEEEECCC
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 421 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~-I~i~d~~~ 421 (545)
+..+..+++|+|++..++ ++..+ + .|++||+.+++.+..+........++|+|++++++++.. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999987777 55444 3 899999999999988888788999999999987776654 578 99999875
Q ss_pred CEEE----EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 422 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 422 ~~~~----~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
...+ .........+..++|+|+|++++++. ++.|++||+.++.....+..+.. ...+..++|+|++++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999766655 77999999988744222555553 46678899999999887776
Q ss_pred c-CCeEEEEeCCCCeEE---EeccC----CC---CeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 009059 496 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 545 (545)
Q Consensus 496 ~-dg~I~iwd~~~~~~~---~~~~h----~~---~V~~l~~spd~~~las~s~-Dg~I~iWd 545 (545)
. ++.|.+||+.+++.. .+..+ .. ....++|+||+++|++++. ++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 568999999998873 22211 22 2355899999998876655 56999996
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=213.81 Aligned_cols=266 Identities=9% Similarity=0.134 Sum_probs=196.5
Q ss_pred EEEEEeCCCcEEEEEcC-CC--eEEEEeccCCccEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCCe-eeeEeccCcc
Q 009059 277 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDY-SLRTFTGHST 349 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~-~~--~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g~I~vwd~~--~~~~-~~~~~~~h~~ 349 (545)
++++++.|+.|++|++. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++.. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444789999999995 33 333333 477789999999999999998886 999999997 4443 233444333
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECC---CCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCC-CEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 424 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~-~~~ 424 (545)
.+..++|+|++..+++++..++.|++||+. ..+....+.....+.+++|+|++.++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998888777778999999994 444555566666789999999999888888 799999999987 644
Q ss_pred EE----EecC-CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeC------CCceEEEEEcCCCCE
Q 009059 425 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT------GNKFHSCVFHPTFPS 490 (545)
Q Consensus 425 ~~----~~~~-h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~------~~~v~~~~~sp~~~~ 490 (545)
.. .+.. ....+.+++|+|++++|++++ ++.|.+|++.... .......+... ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2222 345789999999999776554 7899999996421 11223232211 235678999999998
Q ss_pred EEEEE-cCCeEEEEeCC--CC--eEE-EeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 491 LLVIG-CYETLELWNMT--EN--KTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~--~~--~~~-~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
|+++. .++.|.+||+. ++ +.+ .+..+. .+.+++|+|++++|++++ .|+.|.+|+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 33 333 333343 489999999999888887 689999993
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-25 Score=243.07 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCeEEEEeccCCc------------------------cEEEEE
Q 009059 263 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 312 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~-dg-----~I~lwd~~~~~~~~~l~~h~~------------------------~V~~l~ 312 (545)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346899999999999999998 88 899999999988777765433 378999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc
Q 009059 313 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 313 ~sp~~~~l~t~s~dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~ 390 (545)
|+|||++|++++. +.|.+||+.++. . ...+..|...+.+++|+|+|+.++++ + ++.|++||+.+++........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~~-~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSFI-R-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEEE-E-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEEE-e-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999986 899999998762 2 45667788889999999999776644 4 568999999988766544332
Q ss_pred CC-----------------eeEEEEeCCCCEEEEEECCC---------------------------------eEEEEECC
Q 009059 391 SG-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE 420 (545)
Q Consensus 391 ~~-----------------v~~l~~sp~~~~l~~~~~dg---------------------------------~I~i~d~~ 420 (545)
.. +..+.|+|++.+|++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 22 47799999999999987765 88999998
Q ss_pred C-CEEEEEec--CCCCCEEEEEEcCCCCEEEEEe------CCcEEEEEcCCCCCcceEEEEeeCCC----ceEEEEEcCC
Q 009059 421 T-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPT 487 (545)
Q Consensus 421 ~-~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s------dg~I~vwd~~~~~~~~~i~~~~~~~~----~v~~~~~sp~ 487 (545)
+ ++...... .|...+..++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCC
Confidence 8 77654443 37778999999 9999988764 2379999998873 3444433332 3468899999
Q ss_pred CCEEEEEEcCCeEEEEeC--CCCeEEEeccCCCCeeEE-EEeCCCCEEEE-EeCCC--cEEEcC
Q 009059 488 FPSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~--~~~~~~~~~~h~~~V~~l-~~spd~~~las-~s~Dg--~I~iWd 545 (545)
++++++++.++.++||.+ .+. ...+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 998888888886666654 444 55777888888887 59999997765 44455 888884
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=208.54 Aligned_cols=289 Identities=11% Similarity=0.074 Sum_probs=204.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCe--EEEEeccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE--SFT--VKSTLEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d-g~I~lwd~~--~~~--~~~~l~~h~~~V~~l~ 312 (545)
.+..+++|+......+..+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++
T Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS 90 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence 3567888887533333334333 477789999999999999988876 999999997 444 344554444 789999
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCC--eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeE--
Q 009059 313 FSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV-- 386 (545)
Q Consensus 313 ~sp~~~~l~t~s~-dg~I~vwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~-- 386 (545)
|+|++++|++++. ++.|.+||+.++. .....+. ....+.+++|+|++..+++++..++.|++||+.+ ++....
T Consensus 91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 9999998877765 8899999995222 1233444 3346889999999987876665899999999987 654322
Q ss_pred --Ee--ccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCC--CEE--EEEec---CC---CCCEEEEEEcCCCCEEEEEe
Q 009059 387 --FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQ---GH---KNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 387 --~~--~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~---~h---~~~I~~l~~sp~g~~l~s~s 451 (545)
+. ....+..++|+|++.++++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|+|++|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 22 234688899999999887776 689999999953 322 22222 11 24677899999999887554
Q ss_pred --CCcEEEEEcCCC-CCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEE--eCCCCeEE--EeccCCCCeeEE
Q 009059 452 --DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTL--TLSAHDKLVSSL 523 (545)
Q Consensus 452 --dg~I~vwd~~~~-~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~~~~~--~~~~h~~~V~~l 523 (545)
++.|.+||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+| |..+++.. ..........++
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i 328 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV 328 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence 789999999832 12244555554444 88999999999998888 57899999 55566543 222223567788
Q ss_pred EEeCCCC
Q 009059 524 AASTVNG 530 (545)
Q Consensus 524 ~~spd~~ 530 (545)
+|.++.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 8887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=210.17 Aligned_cols=257 Identities=13% Similarity=0.089 Sum_probs=200.6
Q ss_pred CCcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccC-CccEEEEE
Q 009059 235 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVR 312 (545)
Q Consensus 235 ~~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h-~~~V~~l~ 312 (545)
....+..+++|+..++.. ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++....+..| ...|.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 345678899999988763 34556889999999999999999987 78999999999 8877777666 47789999
Q ss_pred EcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC--CCCceeeEEe
Q 009059 313 FSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK 388 (545)
Q Consensus 313 ~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~--~~~~~~~~~~ 388 (545)
|+|++++|++++ .++.+.||.++........+..+. .+..++|+|++..+++++..++.+++|++ .+++......
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 999999999998 334555555432222244444443 48999999999888878888998999985 4555544445
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-----------Cc
Q 009059 389 CQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------EL 454 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~-~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-----------g~ 454 (545)
....+.++.|+|++..+++++. ++.+.+|++. .+.....+..|...+.+++|+|++++|++++ + ..
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 5567999999999998887774 8888999876 4555667777888899999999999998877 4 46
Q ss_pred EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC
Q 009059 455 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 498 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 498 (545)
|++||+.++.. ..+..+..+...+..++|+|++++|++++.+.
T Consensus 251 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999987643 44555667788899999999999998887765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-24 Score=207.53 Aligned_cols=252 Identities=11% Similarity=0.093 Sum_probs=195.4
Q ss_pred EeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCeeeeEeccC-cccEEEEEEeC
Q 009059 281 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFHP 358 (545)
Q Consensus 281 g~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~~~~~~~~~h-~~~V~~l~~~p 358 (545)
++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...+.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEECC
Confidence 457899999999998876 4556889999999999999999986 78999999998 654 4444445 46789999999
Q ss_pred CCCcEEEEEc-CC--CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEE-EEECCCeEEEEEC--CCCEEEEEecCCC
Q 009059 359 SKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGHK 432 (545)
Q Consensus 359 ~~~~ll~s~s-~d--g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-~~~~dg~I~i~d~--~~~~~~~~~~~h~ 432 (545)
++..+++++. .+ ..|..|++.++. ...+.....+..++|+|++..++ ++..++.+.+|++ .++. ...+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 9877665442 23 445555655554 34444455688999999999887 5667898888885 4444 45566688
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----------Ce
Q 009059 433 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET 499 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------g~ 499 (545)
..+.+++|+|++++|+.++ ++.+++|++.... ..+..+..+...+..+.|+|++++|++++.+ ..
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999887665 7789999886321 3455666677789999999999999988876 46
Q ss_pred EEEEeCCCCeEE---EeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 500 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 500 I~iwd~~~~~~~---~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
|++||+.+++.. .+.+|...+.+++|+|++++|++++.|.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999988654 3447888999999999999998887653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=209.73 Aligned_cols=262 Identities=11% Similarity=0.072 Sum_probs=206.3
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCc--cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEec-cC----
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 347 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~--~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~-~h---- 347 (545)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ ++..++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999998887763322 478899999998765 555678999999988765 44333 22
Q ss_pred cccEEEEEEeCCCCcEEEEEc-----------CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 348 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~ll~s~s-----------~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.....+..++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 225778999999877665431 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------cEEEEEcCCCCCcceEEE
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg-----------------------~I~vwd~~~~~~~~~i~~ 471 (545)
||+.+++.+..+..+... ..+.|+|++.+|+... ++ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 999999888777654311 1237899998766554 22 3689999887432 344
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 55566778899999999998888 6899999999998875444556789999999999999999999999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-23 Score=203.96 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=209.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeE-EEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~-~~~l~~h~~~V~~l~~sp 315 (545)
.+..+++|+..++.... .+..+...+ +++|+|+|++|++++. ++.|.+||..+++. ...+..+..+..+++|+|
T Consensus 18 ~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILN---QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GGTEEEEEETTTCCEEE---EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred CCCeEEEEeCcccceee---eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence 35678899988876543 334556667 9999999997766665 88999999999887 777777777666699999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc-EEEEECCCCcee-----eE
Q 009059 316 SLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCA-----GV 386 (545)
Q Consensus 316 ~~~~l~t~s~dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~-I~lwd~~~~~~~-----~~ 386 (545)
++++|+++..++ .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+ ..
T Consensus 94 dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 171 (331)
T 3u4y_A 94 DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF 171 (331)
T ss_dssp TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred CCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence 999999655553 899999987764 555543 4457999999999888877777788 999998754332 22
Q ss_pred EeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE---EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEc
Q 009059 387 FKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI 460 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~ 460 (545)
+.....+..++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++|+++. ++.|.+||+
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 33445688999999998777766 488999999998876 666664 46778999999999877765 668999999
Q ss_pred CCCCCcceEEEEeeC----CC---ceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 461 GSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~----~~---~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
.+++. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+............-....++|+.
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 251 LSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp TTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred CCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence 87632 123333322 11 12458999999998877765 49999999887765555444433334445554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=232.20 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=204.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 3889999999999999886 999999999873 4456777888999999999999999987 46899999987653 33
Q ss_pred EeccCccc----------------EEEEEEeCCCCcEEEEEcCCC--------------------------------cEE
Q 009059 343 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 374 (545)
Q Consensus 343 ~~~~h~~~----------------V~~l~~~p~~~~ll~s~s~dg--------------------------------~I~ 374 (545)
....+... +.++.|+|+++.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999988775543221 789
Q ss_pred EEECCC-CceeeEEe---ccCCeeEEEEeCCCCEEEEEEC-----CCeEEEEECCCCEEEEEecCCCC----CEEEEEEc
Q 009059 375 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 441 (545)
Q Consensus 375 lwd~~~-~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~-----dg~I~i~d~~~~~~~~~~~~h~~----~I~~l~~s 441 (545)
+||+.+ ++...... +...+..++| |++..|+++.. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77654432 3345789999 99999988764 56899999999987776665443 45689999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEE-EEcCCCCEEEEEEcCC---eEEEEeCCC-Ce-EEEec
Q 009059 442 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 514 (545)
Q Consensus 442 p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~-~~sp~~~~l~~~~~dg---~I~iwd~~~-~~-~~~~~ 514 (545)
|+|++++++. |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888888 8888888776321 3 56666777778887 5999999887666544 788998753 33 33444
Q ss_pred cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEc
Q 009059 515 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 544 (545)
Q Consensus 515 ~h~~~V~~l~~spd~~~las~s~D----g~I~iW 544 (545)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 4 6678899999999988766443 345554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=237.87 Aligned_cols=275 Identities=14% Similarity=0.154 Sum_probs=206.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 332 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~t~s~d---------g~I~vw 332 (545)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3667999999998877 7899999999999988888877765 49999999999999999764 788899
Q ss_pred ECCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCe-----------------
Q 009059 333 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA----------------- 393 (545)
Q Consensus 333 d~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v----------------- 393 (545)
|+.++.. .+....+|...+..++|+|+|+.++++. ++.|++||+.+++....... ...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9998763 1222234455588999999998777544 37999999998877665543 2222
Q ss_pred -eEEEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCEEEEEecCC------C
Q 009059 394 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 432 (545)
Q Consensus 394 -~~l~~sp~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~~~~~~h------~ 432 (545)
..+.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999887543 7999999988765566554 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCcceEEEEee-CCCce----EEEEEcCCCCEEEEE--EcCC--
Q 009059 433 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 498 (545)
Q Consensus 433 ~~I~~l~~sp~g~~l~s~s-d----g~I~vwd~~~~~~~~~i~~~~~-~~~~v----~~~~~sp~~~~l~~~--~~dg-- 498 (545)
..+..++|+|||++|++.. . ..|++||+.+++ +...+.. +...+ ..++|+|+|+.|+.. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999987764 2 379999998873 3333322 23333 378999999987764 4455
Q ss_pred ----eEEEEe-CCCCe---EEEeccCCCCeeE-EEEeCCCCEEEEEeCC---CcEEEcC
Q 009059 499 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 545 (545)
Q Consensus 499 ----~I~iwd-~~~~~---~~~~~~h~~~V~~-l~~spd~~~las~s~D---g~I~iWd 545 (545)
.|++|| ..++. ...+..+...+.. ++|+||+++|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 578888 45555 4455444444554 6999999999876665 7888884
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=240.70 Aligned_cols=291 Identities=8% Similarity=-0.013 Sum_probs=232.2
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEeccCCccEEEEEEcCCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l~~h~~~V~~l~~sp~~~ 318 (545)
...++|....+. ....+.+|.+.|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|+|+
T Consensus 183 ~~~~lw~~~~~~---~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~ 257 (1045)
T 1k32_A 183 TRGKIWIEVNSG---AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR 257 (1045)
T ss_dssp TCCEEEEEEETT---EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred CcCCEEEECCCC---CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCC
Confidence 345666544332 33445899999999999998 6777888889999998653 44455666565 366779999999
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEecc-----------CcccEEEEEEe-CCCCcEEEEEcCCCcEEEEECCCCceeeE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 386 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~-----------h~~~V~~l~~~-p~~~~ll~s~s~dg~I~lwd~~~~~~~~~ 386 (545)
+|+++ .++.|.+|++.... +..+.. |...+.+++|+ |++..+++.+ ++.|++|++..++....
T Consensus 258 ~la~~-~~~~i~~~d~~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~ 332 (1045)
T 1k32_A 258 RILFS-KGGSIYIFNPDTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKV 332 (1045)
T ss_dssp CEEEE-ETTEEEEECTTTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEEC
T ss_pred EEEEE-eCCEEEEecCCceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEc
Confidence 99988 48999999995432 334443 34578999999 9987776544 78999999998776554
Q ss_pred EeccC-CeeEEEEeCCCCEEEEEECCCeEE-EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 387 FKCQS-GATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 387 ~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~-i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
..+.. .+..+.|+ ++..+++++.++.+. +||+.++.... +.+|...+..++|+|+|++|++++ ++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 44444 68889999 988899988888899 99998876554 447888999999999999999988 889999999887
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC----------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~la 533 (545)
........+...+..++|+|++++|++++.++ .|++||+.+++...+..|...+..++|+|||++|+
T Consensus 411 ---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 411 ---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp ---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred ---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence 45555557888899999999999998887754 89999999998778888999999999999999999
Q ss_pred EEeCCCcEEEcC
Q 009059 534 SASHDKCVKIWK 545 (545)
Q Consensus 534 s~s~Dg~I~iWd 545 (545)
+++.++...+|+
T Consensus 488 ~~s~~~~~~~~~ 499 (1045)
T 1k32_A 488 YLSYRSLDPSPD 499 (1045)
T ss_dssp EEESCCCCCEEC
T ss_pred EEecccCCcCcc
Confidence 999888777764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=228.78 Aligned_cols=273 Identities=12% Similarity=0.088 Sum_probs=206.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CC
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PD 338 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-----~~ 338 (545)
..|.+++|+|| +.++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 69999999998876544 4466778999999999999995 689999999987 55
Q ss_pred eeeeEeccCccc--------------EEEEEEeCCCCcEEEEEc--------------------------------CCCc
Q 009059 339 YSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNSE 372 (545)
Q Consensus 339 ~~~~~~~~h~~~--------------V~~l~~~p~~~~ll~s~s--------------------------------~dg~ 372 (545)
. ......+... +.++.|+|+++.++++.. .+..
T Consensus 158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 3 3333333332 488999999987775541 3467
Q ss_pred EEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEECCC-----eEEEEECCCC-EEEEEecC-CCC---CEEEEE
Q 009059 373 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSVC 439 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg-----~I~i~d~~~~-~~~~~~~~-h~~---~I~~l~ 439 (545)
|++||+.+++...... +...+..++|+|+++.+++++.++ .|++||+.++ ........ +.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887655442 234588999999999999887765 8999999998 44333321 222 346789
Q ss_pred EcC--CCCEEEEEe-CCcEEEEEcC-CCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcCC-----eEEEEeCCCCe
Q 009059 440 WNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTENK 509 (545)
Q Consensus 440 ~sp--~g~~l~s~s-dg~I~vwd~~-~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~ 509 (545)
|+| +|++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.+++
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999 999998888 8888999876 33 456666667777776 79999999887776653 67788888877
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 009059 510 TLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 545 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd~~~las~s~D----g~I~iWd 545 (545)
...+ .|...+.+++|+||+++|+.++.+ +.|++||
T Consensus 394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 5444 377789999999999988876544 4588885
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=225.79 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=205.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--
Q 009059 263 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 336 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~-dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~-- 336 (545)
..+|++++|+|||++||+++. ||++.||++.+++.......+...+..++|+|| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999777665544444468999999999 77777775 45566655543
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC----C
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g 412 (545)
..... .+..+. .+...+|+|+++.++++.+.++.+.+||+.+++......... .++.|+|+|..+++++.+ +
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22212 333222 344668899887766565556667799999988776665444 889999999999988776 7
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEE------
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------ 483 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~------ 483 (545)
.|++||+.+++.. .+..|...+..++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence 8999999988755 5677888999999999999999766 77 8999999876 333 5556666666666
Q ss_pred --EcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCc---EEEcC
Q 009059 484 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 545 (545)
Q Consensus 484 --~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~---I~iWd 545 (545)
|+|++..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |.+||
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888999999999999 65543 345678999999 9999998887743 55553
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=236.44 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=229.1
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCeEEEEeccCCccE------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI------ 308 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d------g~I~lwd~~~~~~~~~l~~h~~~V------ 308 (545)
.+.+|+...+. .+.+.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+
T Consensus 34 ~l~~~~~~gg~----~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~ 108 (1045)
T 1k32_A 34 DLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF 108 (1045)
T ss_dssp EEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred cEEEEECCCCc----EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence 56777777664 35567899999999999999999988643 379999998877 56788888888
Q ss_pred -EEEEEcCCCCEEEEEeCC------CeEEEEECCCCCee-----------------------------------------
Q 009059 309 -TDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS----------------------------------------- 340 (545)
Q Consensus 309 -~~l~~sp~~~~l~t~s~d------g~I~vwd~~~~~~~----------------------------------------- 340 (545)
..++|+|||+++++++.+ ..|.+|++..+...
T Consensus 109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw 188 (1045)
T 1k32_A 109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW 188 (1045)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence 999999999977777754 35777776543210
Q ss_pred -------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC-CceeeEEeccCCeeEEEEeCCCCEEEEEECCC
Q 009059 341 -------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 341 -------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 412 (545)
...+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+..+..+...+|+|++..++++ .++
T Consensus 189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~ 265 (1045)
T 1k32_A 189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG 265 (1045)
T ss_dssp EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence 1123456778888899876 6777888889889997653 3344444444557778999998888777 589
Q ss_pred eEEEEECCCCEEEEEecC-----------CCCCEEEEEEc-CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCC-ce
Q 009059 413 YISILDVETQVCRLKLQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KF 479 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~-----------h~~~I~~l~~s-p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~-~v 479 (545)
.|++||+...... .+.. |...+.+++|+ |+|++|+++.++.|.+|++..+ . ...+..+.. .+
T Consensus 266 ~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~ 340 (1045)
T 1k32_A 266 SIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRY 340 (1045)
T ss_dssp EEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEE
T ss_pred EEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceE
Confidence 9999999554433 5554 23368999999 9999999998999999998765 2 233555666 89
Q ss_pred EEEEEcCCCCEEEEEEcCCeEE-EEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 480 HSCVFHPTFPSLLVIGCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 480 ~~~~~sp~~~~l~~~~~dg~I~-iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..++|+ +++.|++++.+..|+ +||+.+++...+..|...+..++|+|||++|++++.++.|++||
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 999999 999999999888899 99999988777668888999999999999999999999999996
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-22 Score=197.55 Aligned_cols=249 Identities=14% Similarity=0.158 Sum_probs=183.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 334 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~---dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~ 334 (545)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 4456788899999999 555443 6899999998766 3445456777889999999999998888 6899999999
Q ss_pred CCC-Ce-eeeEecc---------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceeeE--Ee--ccCCeeEEEE
Q 009059 335 ENP-DY-SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 398 (545)
Q Consensus 335 ~~~-~~-~~~~~~~---------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~~--~~--~~~~v~~l~~ 398 (545)
... .. .+..+.. +...+.+++|+|+++ ++++...++.|++|++. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 632 22 1222221 123488999999998 77788788999999998 5544322 22 2235788999
Q ss_pred eCCCCEEEEEE-CCCeEEEEECCC--CEE--EEEecCCC------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC
Q 009059 399 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 465 (545)
Q Consensus 399 sp~~~~l~~~~-~dg~I~i~d~~~--~~~--~~~~~~h~------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~ 465 (545)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 578999999874 543 23333222 3588999999999875544 78999999974323
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEE--eCCCCeEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 511 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 511 (545)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 35566666666778999999999999998876 799999 55667665
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-21 Score=194.84 Aligned_cols=260 Identities=11% Similarity=0.101 Sum_probs=182.4
Q ss_pred CCcEEEEEc--CCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCe-eeeEeccCcccEEEEEE
Q 009059 284 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 356 (545)
Q Consensus 284 dg~I~lwd~--~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~---dg~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~ 356 (545)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|.+|++.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777755 4565543 3334556788899999999 555544 68999999976553 23344556778899999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCC-Cc--eeeEEecc----------CCeeEEEEeCCCCEEEEEECCCeEEEEECC-CC
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 422 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~-~~--~~~~~~~~----------~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~-~~ 422 (545)
+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|++..+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999987876666889999999963 33 23333221 137789999998844444457899999998 55
Q ss_pred EEE--EEecC-CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CcceEEEEeeCC------CceEEEEEcCCCCE
Q 009059 423 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFPS 490 (545)
Q Consensus 423 ~~~--~~~~~-h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~-~~~~i~~~~~~~------~~v~~~~~sp~~~~ 490 (545)
+.. ..+.. ....+..++|+|+|++|+++. ++.|.+|++.... ....+..+.... ..+..++|+|++++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22232 234788999999999777755 7799999987521 112233333222 45889999999998
Q ss_pred EEEEE-cCCeEEEEeCCCC---eEE-EeccCCCCeeEEEEeCCCCEEEEEeCC-CcEEEc
Q 009059 491 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 544 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~~~---~~~-~~~~h~~~V~~l~~spd~~~las~s~D-g~I~iW 544 (545)
|+++. .++.|.+|++... +.+ .+..+...+..++|+||+++|++++.+ +.|.+|
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86554 5789999999732 333 445566778999999999998888765 899999
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-22 Score=202.56 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=207.6
Q ss_pred EEeecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 256 FQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 256 ~~~l~~H~~~V~~-----l~~spdg~~latg~~-dg--~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
+..+..|...+.. .+|+|||++||.++. ++ .|.+||+.+++......++...+..++|+||+++|+.++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4456667666666 899999999999887 66 488899999988877777777666788999999999999999
Q ss_pred eEEEEECCCCCeeeeEeccCcccEEEEE--EeCCCCcEEEEE---------------------cCCCcEEEEECCCCcee
Q 009059 328 TVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSCA 384 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h~~~V~~l~--~~p~~~~ll~s~---------------------s~dg~I~lwd~~~~~~~ 384 (545)
.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++..
T Consensus 103 ~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (388)
T 3pe7_A 103 NLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST 181 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence 999999998764 444454555554444 478876655321 23468999999999877
Q ss_pred eEEeccCCeeEEEEeC-CCCEEEEEECC------CeEEEEECCCCEEEEEecCCC--CCEEEEEEcCCCCEEEEEe--CC
Q 009059 385 GVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--DE 453 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~--~~I~~l~~sp~g~~l~s~s--dg 453 (545)
........+..+.|+| ++..|+.+..+ ..|.++|+..+.... +..+. ..+..++|+|+|+.|+..+ ++
T Consensus 182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (388)
T 3pe7_A 182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKG 260 (388)
T ss_dssp EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCC
Confidence 7777667789999999 98888877753 378889987665433 33343 3578899999999776544 33
Q ss_pred ----cEEEEEcCCCCCcceEEEEeeCCCc---eEEEEEcCCCCEEEEE---------EcCCeEEEEeCCCCeEEEeccCC
Q 009059 454 ----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAHD 517 (545)
Q Consensus 454 ----~I~vwd~~~~~~~~~i~~~~~~~~~---v~~~~~sp~~~~l~~~---------~~dg~I~iwd~~~~~~~~~~~h~ 517 (545)
.|++||+.+++. ..+..+..+... ...+.|+|+|+.|+.. ..+..|++||+.+++...+..|.
T Consensus 261 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (388)
T 3pe7_A 261 SPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHD 339 (388)
T ss_dssp CCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECC
T ss_pred CCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecccc
Confidence 299999988743 233333221000 1113699999988765 34558999999999887776666
Q ss_pred C-----------CeeEEEEeCCCCEEEEEe-CCCcEEEc
Q 009059 518 K-----------LVSSLAASTVNGMVASAS-HDKCVKIW 544 (545)
Q Consensus 518 ~-----------~V~~l~~spd~~~las~s-~Dg~I~iW 544 (545)
. .+.+++|+|||+.|+.++ .+|...||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 340 TSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 6 588899999999888666 47777776
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=224.34 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=206.2
Q ss_pred cceeeeeecCCceeeEEEEeecCCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCeEE--EEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVK--STLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~spdg~~latg~~d---------g~I~lwd~~~~~~~--~~l~~h 304 (545)
+..+++|+..++.. ...+.+|.. .|.+++|||||++||+++.+ +.|++||+.+++.. .....|
T Consensus 36 dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 36 KGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp SSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccc
Confidence 45789999988754 344566665 49999999999999999764 78889999988762 222345
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCccc------------------EEEEEEeCCCCcEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT------------------VMSLDFHPSKEDLLCS 366 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~------------------V~~l~~~p~~~~ll~s 366 (545)
...+..++|+|||++|++++. +.|++||+.++.. ......+... +.+++|+|+++.++++
T Consensus 113 ~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 113 NAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp SCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred cccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 556889999999999999986 7999999987664 4444433332 3789999999877755
Q ss_pred EcCC---------------------------------CcEEEEECCCCceeeEEec-------cCCeeEEEEeCCCCEEE
Q 009059 367 CDNN---------------------------------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRIL 406 (545)
Q Consensus 367 ~s~d---------------------------------g~I~lwd~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~ 406 (545)
...+ ..|++||+.++++...+.. ...+..+.|+|++..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~ 270 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV 270 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence 4321 2799999998876555543 23478899999988776
Q ss_pred EEEC----CCeEEEEECCCCEEEEEecC-CCCCE----EEEEEcCCCCEEEEE-e--CC------cEEEEEc-CCCCCcc
Q 009059 407 AAAI----ENYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S--DE------LVRVWSI-GSGSKGE 467 (545)
Q Consensus 407 ~~~~----dg~I~i~d~~~~~~~~~~~~-h~~~I----~~l~~sp~g~~l~s~-s--dg------~I~vwd~-~~~~~~~ 467 (545)
+... +..|++||+.+++....+.. +...+ ..++|+|+|+.|+.. + ++ .|.+||+ ..+.. .
T Consensus 271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~ 349 (723)
T 1xfd_A 271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN-D 349 (723)
T ss_dssp EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS-C
T ss_pred EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc-c
Confidence 6653 35799999999887665543 33444 378999999977654 3 66 4666773 33320 0
Q ss_pred eEEEEeeCCCceEE-EEEcCCCCEEEEEEcC---CeEEEEeCCCC---eEEEecc---CCCCeeEEEEeCCCCEEEEEe
Q 009059 468 CIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA---HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 468 ~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~d---g~I~iwd~~~~---~~~~~~~---h~~~V~~l~~spd~~~las~s 536 (545)
+...+......+.. ++|+|+++.|+..+.+ +.++||++... +...+.. |...+..++|+||+++|+...
T Consensus 350 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 12233333344444 6999999999877766 67889987542 2223433 677799999999999887654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-20 Score=190.15 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=199.5
Q ss_pred cceeeeeecC--CceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCC--CeE--EEEeccCCccE
Q 009059 239 DRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWI 308 (545)
Q Consensus 239 d~~~~~~~~~--~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d----g~I~lwd~~~--~~~--~~~l~~h~~~V 308 (545)
+..+.+|.+. ++ .+..+..+ |...+..++|+|||++|++++.+ +.|.+|++.. ++. +.....+....
T Consensus 26 ~~~i~~~~~d~~~g-~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETG-ESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp CCEEEEEEEETTTC-CEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCEEEEEEeCCCC-CEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 3445566543 33 33444444 77788899999999999999875 7999998765 443 33444456677
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeee--eE---ecc--------CcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 309 TDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~--~~---~~~--------h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
..+++ ++++|++++ .++.|.+|++....... .. ..+ +...+.+++|+|+++.+++++..++.|+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 88888 788777776 57899999997543211 11 111 1234688999999988887877789999
Q ss_pred EEECCCCce--------------eeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE--EEEec---CCCCC
Q 009059 375 YWSINNGSC--------------AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQ 434 (545)
Q Consensus 375 lwd~~~~~~--------------~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~--~~~~~---~h~~~ 434 (545)
+|++..... .........+..++|+|++++++++. .++.|.+||+.++.. +..+. .+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 260 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG 260 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence 998875431 11223345688999999999888888 589999999987754 23332 23456
Q ss_pred EEEEEEcCCCCEEEEEe-C--CcEEEEEcCCC-CCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEE--eCCC
Q 009059 435 VHSVCWNTSGEYLASVS-D--ELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTE 507 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~s-d--g~I~vwd~~~~-~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iw--d~~~ 507 (545)
+..++|+|+|++|+++. + +.|.+|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+| |..+
T Consensus 261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 78999999999987766 5 68999999621 22234545554 56788999999999999988 45788885 5567
Q ss_pred CeEEEec--cCCCCeeEEEEe
Q 009059 508 NKTLTLS--AHDKLVSSLAAS 526 (545)
Q Consensus 508 ~~~~~~~--~h~~~V~~l~~s 526 (545)
++...+. .+...+.||.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 7766443 345678898886
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=196.09 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=193.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEec
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
.++++++++++++++.++.|++||..+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 35778889999999999999999999999888876543 2578899999998665 455689999999988764 44443
Q ss_pred -cC-----cccEEEEEEeCCCCcEEEEEcC-----------CCcEEEEECCCCc---eeeEEeccCCeeEEEEeCCCCEE
Q 009059 346 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 346 -~h-----~~~V~~l~~~p~~~~ll~s~s~-----------dg~I~lwd~~~~~---~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347889999998877755432 4899999998844 344555666788999999988 6
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCC------------------------CEEEEEEcCCCCEEEEEe--CCcEEEEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 459 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~------------------------~I~~l~~sp~g~~l~s~s--dg~I~vwd 459 (545)
+++ ++.|++||+.+++.+..+..+.. ....+++++++....... ...+..++
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34499999999988777654320 344566766542211111 11222345
Q ss_pred cCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 460 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
..++. .....+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 44432 12222334566788999999 99988888 889999999999887444455568899999999988888889
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=195.33 Aligned_cols=262 Identities=12% Similarity=0.068 Sum_probs=199.6
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCC-CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEecc-C----CccEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-H----TQWITD 310 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~-~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~-h----~~~V~~ 310 (545)
.+..+++||..++.....+. .++.. .+.+++|+|+|++++ ++..++.|.+||+.+++.+..+.. + ...+.+
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVIT--IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEE--CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CCCeEEEEECCCCcEEEEEE--cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 35678889988876544332 12222 478899999998764 555678999999999988876653 2 235778
Q ss_pred EEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEEC
Q 009059 311 VRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378 (545)
Q Consensus 311 l~~sp~~~~l~t~s------------~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~ 378 (545)
++|+|++++|+++. .++.|.+||+.+++. +..+.. ...+.+++|+|+++.++++ ++.|++||+
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d~ 161 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMDP 161 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEET
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEEC
Confidence 99999999999886 579999999987654 444443 4567889999998877644 688999999
Q ss_pred CCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC------------------------eEEEEECCCCEEE-EEecCCCC
Q 009059 379 NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------------------------YISILDVETQVCR-LKLQGHKN 433 (545)
Q Consensus 379 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg------------------------~I~i~d~~~~~~~-~~~~~h~~ 433 (545)
.+++....+........+.|+|++..+++.+..+ .|.+||+.+++.. ..+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9998887776544223447888887666554322 4789999988664 33445667
Q ss_pred CEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 434 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus 242 ~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 88999999999999888 789999999876 45555543 456789999999999999988999999999998877
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=212.63 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=194.4
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----CeEEEEeccCCcc-------
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW------- 307 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-----~~~~~~l~~h~~~------- 307 (545)
..+++|+..++.. ..+..|...+.+++|||||++||++ .++.|++|++.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~----~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 101 GGLVGFDMLARKV----TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TEEEEEETTTTEE----EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CEEEEEECCCCce----EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 6788999887743 3345677789999999999999995 689999999998 7776655544443
Q ss_pred -------EEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCCCCeeeeEe--c
Q 009059 308 -------ITDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTF--T 345 (545)
Q Consensus 308 -------V~~l~~sp~~~~l~t~s---------------------------------~dg~I~vwd~~~~~~~~~~~--~ 345 (545)
+.+++|+|||++|++++ .+..|.+||+.++.. .... .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence 48899999999999987 457899999987654 2222 2
Q ss_pred cCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCC-ceeeEEeccC-----CeeEEEEeC--CCCEEEEEECCC
Q 009059 346 GHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-SCAGVFKCQS-----GATQMRFQP--RLGRILAAAIEN 412 (545)
Q Consensus 346 ~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~-~~~~~~~~~~-----~v~~l~~sp--~~~~l~~~~~dg 412 (545)
.|...+.+++|+|+++.++++. .++ .|++||+.++ .......... .+..+.|+| ++.+++++..++
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 5677899999999987766444 343 8999999998 4333332211 236789999 988787787888
Q ss_pred eEEEEECC-CCEEEEEecCCCCCEEE-EEEcCCCCEEEEEe--CC----cEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 413 YISILDVE-TQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 413 ~I~i~d~~-~~~~~~~~~~h~~~I~~-l~~sp~g~~l~s~s--dg----~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
.+++|++. ++..+..+..+...+.. ++|+|+++.|+.++ ++ .|..||+.++. ...+. +...+..++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEE
Confidence 88888776 56677778778888877 79999999887665 44 56667766653 22222 5667899999
Q ss_pred cCCCCEEEEEEcC----CeEEEEeCCCCe
Q 009059 485 HPTFPSLLVIGCY----ETLELWNMTENK 509 (545)
Q Consensus 485 sp~~~~l~~~~~d----g~I~iwd~~~~~ 509 (545)
+|++++|++...+ +.|++||+.+++
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999988877554 369999998887
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=187.16 Aligned_cols=235 Identities=9% Similarity=0.077 Sum_probs=190.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~-------dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+..++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456789999999999888874 56899999998764 555443 345788999999988888888889999999
Q ss_pred CCCCceeeEEeccC----------CeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCC
Q 009059 378 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 378 ~~~~~~~~~~~~~~----------~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
+.+++.+..+.... .+..+.|+|++++++++. .++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888877543 168899999999888877 378999999999999988876666789999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 519 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~ 519 (545)
+|+++. ++.|.+||+.++ ..+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 889999999887 55555543 44567889999999988888765 799999999998873322222
Q ss_pred eeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 520 VSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 520 V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
...++|+|++++|++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 25799999999666555 689999996
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=199.25 Aligned_cols=241 Identities=10% Similarity=0.084 Sum_probs=175.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe----------EEEE-----eccCCccEEEEEEcCCCCEEE----EE
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSPSLSRLA----TS 323 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~----------~~~~-----l~~h~~~V~~l~~sp~~~~l~----t~ 323 (545)
...+..+++++++.+|++++.++ |+||+..... .+.. ...|...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34688999999999999999887 8888753210 1111 113567799999999999999 78
Q ss_pred eCCCeEEEEECCCC-----Ce-----eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCC
Q 009059 324 SADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSG 392 (545)
Q Consensus 324 s~dg~I~vwd~~~~-----~~-----~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~ 392 (545)
+.|+.|+|||+.+. .. .+..+.+|...|.+++|+|+...++++++.||+|++||++++..+.... +...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999998653 11 2456678999999999999867788899999999999999886654433 4568
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-------CCEEEEEEcCCCCEEEEEe--CC------cEEE
Q 009059 393 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS--DE------LVRV 457 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-------~~I~~l~~sp~g~~l~s~s--dg------~I~v 457 (545)
+.+++|+|++.+|++++.||.|++||++ +.....+..|. ..|.+++|++++.++++.. +| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 55555554432 3799999999988887654 43 3899
Q ss_pred EEcCCCCC--cceEEEEe-------eCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeC
Q 009059 458 WSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 505 (545)
Q Consensus 458 wd~~~~~~--~~~i~~~~-------~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~ 505 (545)
|+++.... ......+. ....+...+.+.++.+++++++... .|.|+..
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 274 ALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99986532 12222221 1122333344447777777766544 4555543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=187.14 Aligned_cols=266 Identities=9% Similarity=0.073 Sum_probs=187.5
Q ss_pred CCEEEEEe----CCCcEEEEEc--CCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCC--Ce-ee
Q 009059 275 GKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-SL 341 (545)
Q Consensus 275 g~~latg~----~dg~I~lwd~--~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~--~~-~~ 341 (545)
..++++|+ .++.|.+|.+ ++++.......+...+..++|+|++++|++++.+ +.|.+|++... .. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 3568999866 4555443222267778889999999999999886 79999998763 22 12
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE----Eec-----------cCCeeEEEEeCCCCEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKC-----------QSGATQMRFQPRLGRIL 406 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~----~~~-----------~~~v~~l~~sp~~~~l~ 406 (545)
.....+......+++ +++.++++...++.|.+|++.....+.. +.. ...+.+++|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333445566778888 6777777777889999999975433221 111 12247899999999887
Q ss_pred EEEC-CCeEEEEECCCCE-------E------EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEE
Q 009059 407 AAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 407 ~~~~-dg~I~i~d~~~~~-------~------~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~ 470 (545)
++.. ++.|.+|++.... . ......+...+..++|+|+|++|+++. ++.|.+|++.++.. ..+.
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~ 249 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ 249 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence 7765 7899999887432 1 122233456788999999999887776 77999999986522 2233
Q ss_pred EEe---eCCCceEEEEEcCCCCEEEEEEcC--CeEEEEeCC--CCeEE---EeccCCCCeeEEEEeCCCCEEEEEe-CCC
Q 009059 471 ELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDK 539 (545)
Q Consensus 471 ~~~---~~~~~v~~~~~sp~~~~l~~~~~d--g~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spd~~~las~s-~Dg 539 (545)
.+. .+......++|+|++++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+||+++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 332 223457899999999999887766 799999985 44432 2333 56788999999999988887 678
Q ss_pred cEEEc
Q 009059 540 CVKIW 544 (545)
Q Consensus 540 ~I~iW 544 (545)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=216.91 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=199.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc---cEEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 335 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~---~V~~l~~sp~~~~l~t~s~---------dg~I~vwd~~ 335 (545)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999966555 4699999999999998877776654 4899999999999999876 7899999998
Q ss_pred CCCeee-eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-------------------CCeeE
Q 009059 336 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 395 (545)
Q Consensus 336 ~~~~~~-~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-------------------~~v~~ 395 (545)
+++... ..+ ...+..++|+|+|+.++++ . ++.|++||+.+++........ .....
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2468899999999877754 3 789999999888765432211 11148
Q ss_pred EEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCEEE---E-----EecCCCC
Q 009059 396 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 433 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg----------------------------------~I~i~d~~~~~~~---~-----~~~~h~~ 433 (545)
+.|+|+|..|++++.|. .|++||+.+++.+ . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999887642 7889999987642 1 1335778
Q ss_pred CEEEEEEcCCCCEEEEEe-CC----cEEEEE----cCCCCCcceEE-EEeeCCCceE-----EEEEcCCCCEEEEE--Ec
Q 009059 434 QVHSVCWNTSGEYLASVS-DE----LVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 496 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg----~I~vwd----~~~~~~~~~i~-~~~~~~~~v~-----~~~~sp~~~~l~~~--~~ 496 (545)
.+..++|+||++++++.. .+ .|.+|| +.+++....+. ....+...+. .+.|+|+++.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 22 488899 76653222221 1134555565 78999999976653 34
Q ss_pred CC--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCC-----CcEEEcC
Q 009059 497 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 545 (545)
Q Consensus 497 dg--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~D-----g~I~iWd 545 (545)
++ .|++||+.+++...+..+...+..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888999888877777777778888888 88877776655 7788873
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=183.96 Aligned_cols=267 Identities=11% Similarity=0.062 Sum_probs=185.7
Q ss_pred EEEEEeCC--CcEEEEEc--CCCeEEEE--ec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCeeeeEecc-C
Q 009059 277 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 347 (545)
Q Consensus 277 ~latg~~d--g~I~lwd~--~~~~~~~~--l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~-~~~~~~~~~~~-h 347 (545)
+|++|++. +.|.+|++ .++++... .. .+...+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45566653 46877764 55654322 21 234467889999999999999888 99999997 5543 222211 1
Q ss_pred cccEEEEEEeCCCCc-EEEEEc-------------CCCcEEEEECC-CCceeeEEe-----ccCCeeEEEEeCCCCEEEE
Q 009059 348 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 348 ~~~V~~l~~~p~~~~-ll~s~s-------------~dg~I~lwd~~-~~~~~~~~~-----~~~~v~~l~~sp~~~~l~~ 407 (545)
.+.+.+++|+|+++. +++++. .++.+.+|++. +++....+. ....+..++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123556899999875 344553 68999999997 466554433 3456899999999998887
Q ss_pred EEC-CCeEEEEECC-CCEEE--EEec--CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCC--CCCcceEEEEee---
Q 009059 408 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELSC--- 474 (545)
Q Consensus 408 ~~~-dg~I~i~d~~-~~~~~--~~~~--~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~--~~~~~~i~~~~~--- 474 (545)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|+|++|+++. ++.|.+|++.. +........+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 765 6899999998 66543 3333 2466799999999999988776 67999998763 321100122221
Q ss_pred ----CCC------ceEEEE-EcCCCCEEEEEEcCC------eEEEEeCC-CCeEEE----eccCCCCeeEEEEeC---CC
Q 009059 475 ----TGN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 529 (545)
Q Consensus 475 ----~~~------~v~~~~-~sp~~~~l~~~~~dg------~I~iwd~~-~~~~~~----~~~h~~~V~~l~~sp---d~ 529 (545)
+.. .+..++ |+|++++|+++..+. .|.+|++. +++... ...+...+..++|+| |+
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 111 588999 999999988776533 89999996 565542 223556678899999 89
Q ss_pred CEEEEEeCC-CcEEEcC
Q 009059 530 GMVASASHD-KCVKIWK 545 (545)
Q Consensus 530 ~~las~s~D-g~I~iWd 545 (545)
++|++++.+ +.|+||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999875 8999995
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=191.46 Aligned_cols=271 Identities=13% Similarity=0.041 Sum_probs=191.5
Q ss_pred eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 266 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 266 V~~l~~spdg~~latg~~d---g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+.+++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+++|+.++.++.|.+||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 4788899998876655444433333478999999999999999999999987654 33
Q ss_pred EeccCcccEEE-------------------EEEeCCCCcEEEEE----cCCCcEEEEECCCCceeeEEeccCCeeEEEEe
Q 009059 343 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399 (545)
Q Consensus 343 ~~~~h~~~V~~-------------------l~~~p~~~~ll~s~----s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s 399 (545)
....+...... +.|+|+++.+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677766555332 45678999999998877777666778999999
Q ss_pred C-CCCEEEEEECC------CeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCC
Q 009059 400 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS 464 (545)
Q Consensus 400 p-~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~ 464 (545)
| ++..|+..+.+ ..|.+||+..+.... +..+ ...+..++|+|+|++|+..+ + +.|++||+.++.
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 9 77777776653 469999987665333 3223 23578899999999777665 3 239999998763
Q ss_pred CcceEEEEeeCCCceEEEEEcC-CCCEEEEEE----------------cCCeEEEEeCCCCeEEEeccCCC---------
Q 009059 465 KGECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK--------- 518 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~----------------~dg~I~iwd~~~~~~~~~~~h~~--------- 518 (545)
. ..+..+ . ... +.|+| +++++++++ .+..|++||+.+++...+..+..
T Consensus 276 ~-~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 276 N-EEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDR 349 (396)
T ss_dssp E-EEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBS
T ss_pred e-EEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccc
Confidence 2 222221 1 233 89999 999887755 23689999999887666655554
Q ss_pred --CeeEEEEeCCCCEEEEEeC-CCcEEEc
Q 009059 519 --LVSSLAASTVNGMVASASH-DKCVKIW 544 (545)
Q Consensus 519 --~V~~l~~spd~~~las~s~-Dg~I~iW 544 (545)
.+..++|+|||+.|+.++. ++...||
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2567899999998887765 5666665
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-20 Score=199.59 Aligned_cols=230 Identities=10% Similarity=0.058 Sum_probs=177.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcC---CCcEEEEEC
Q 009059 304 HTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSI 378 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~---dg~I~lwd~ 378 (545)
+..+|++++|+|||++||+++. ||+++||++..+. .+.+..|. ..+..++|+|+ .++++++. +...++|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 9999999986543 45555555 68999999998 56666664 444555544
Q ss_pred CC---CceeeEEeccCCeeEEEEeCCCCE-EEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-
Q 009059 379 NN---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D- 452 (545)
Q Consensus 379 ~~---~~~~~~~~~~~~v~~l~~sp~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d- 452 (545)
.. +... .+.........+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEE
T ss_pred eccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcC
Confidence 32 2222 3333345667789998765 4555566667799999987665554333 7899999999999776 5
Q ss_pred ---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEEEeccCCCCeeEEE---
Q 009059 453 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA--- 524 (545)
Q Consensus 453 ---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~h~~~V~~l~--- 524 (545)
..|++||+.++.. ..+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTA 247 (582)
T ss_dssp TTEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSE
T ss_pred CCCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcc
Confidence 5899999987642 25567788899999999999999888888 89999999988876667877777777
Q ss_pred -----EeCCCCEEEEEeCCCcEEEcC
Q 009059 525 -----ASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 525 -----~spd~~~las~s~Dg~I~iWd 545 (545)
|+|||.++++++.||.++||+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=205.73 Aligned_cols=295 Identities=11% Similarity=0.041 Sum_probs=201.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCC---CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCeEE--EEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVK--STLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~---~V~~l~~spdg~~latg~~---------dg~I~lwd~~~~~~~--~~l~~h 304 (545)
+..+++|+..++.. ...+.+|.. .|.+++|||||++||+++. ++.|++||+.+++.+ ..+
T Consensus 35 d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--- 108 (719)
T 1z68_A 35 DNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--- 108 (719)
T ss_dssp TSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---
T ss_pred CCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---
Confidence 45788999888764 233444433 4899999999999999876 689999999998873 222
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-----------------EEEEEeCCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~ll~s~ 367 (545)
...+..++|+|||++|+++. ++.|++|++.++.....+..++...| .+++|+|||+.+++..
T Consensus 109 ~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 109 PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 24688899999999999986 78999999987664222223333323 4899999998777544
Q ss_pred cCCC---------------------------------cEEEEECCCCcee--eEE-------eccCCeeEEEEeCCCCEE
Q 009059 368 DNNS---------------------------------EIRYWSINNGSCA--GVF-------KCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 368 s~dg---------------------------------~I~lwd~~~~~~~--~~~-------~~~~~v~~l~~sp~~~~l 405 (545)
..++ .|++||+.+++.. ..+ .+...+..++|+|++..+
T Consensus 188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 3221 7889999987753 111 122347899999995544
Q ss_pred EEEECC----CeEEEEE----CCCCEEEEEe----cCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--cEEEEEcCCC
Q 009059 406 LAAAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSG 463 (545)
Q Consensus 406 ~~~~~d----g~I~i~d----~~~~~~~~~~----~~h~~~I~-----~l~~sp~g~~l~s--~s-dg--~I~vwd~~~~ 463 (545)
++.... ..|.+|| +.+++....+ .+|...+. .+.|+|+|+.|+. .. ++ .|.+||+.++
T Consensus 268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 443322 2589999 8887765544 46777676 8899999986554 33 55 6777777655
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCC--CC--eEEEec----cCCCCeeEEEEeCCCC
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNG 530 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~--~~--~~~~~~----~h~~~V~~l~~spd~~ 530 (545)
. ...+..+...+..+.++ +++.|+..+.+ +.+++|.+. ++ +...+. +|...+..+.|+|+++
T Consensus 348 ~----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 348 N----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp T----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS
T ss_pred c----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC
Confidence 3 23444455567777777 88888888776 677777664 34 223332 2667788999999998
Q ss_pred EEEE-EeCC--CcEEEcC
Q 009059 531 MVAS-ASHD--KCVKIWK 545 (545)
Q Consensus 531 ~las-~s~D--g~I~iWd 545 (545)
+|+. ++.+ ..+.+||
T Consensus 423 ~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 423 YYALVCYGPGIPISTLHD 440 (719)
T ss_dssp SEEEEECCBSSCEEEEEC
T ss_pred EEEEEcCCCCCCeEEEEE
Confidence 7764 3333 3456664
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=175.86 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=174.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCeEEEEeccC-CccEEEEEEcCCCCE--EEEEe-------------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 324 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~-~~~~~~~l~~h-~~~V~~l~~sp~~~~--l~t~s------------- 324 (545)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999887 99999997 77765433211 123556899999994 45553
Q ss_pred CCCeEEEEECCC-CCeeeeEec----cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-CCceee--EEe---ccCCe
Q 009059 325 ADRTVRVWDTEN-PDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGA 393 (545)
Q Consensus 325 ~dg~I~vwd~~~-~~~~~~~~~----~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-~~~~~~--~~~---~~~~v 393 (545)
.++.+.+|++.. +.. ...+. .+...+.+++|+|+++.++++...++.|++||+. +++... .+. +...+
T Consensus 117 ~~g~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 689999999974 332 22222 2456799999999998776555557899999998 676532 333 14568
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECC--CCEEE---EEec---C----CCC------CEEEEE-EcCCCCEEEEEe--
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQ---G----HKN------QVHSVC-WNTSGEYLASVS-- 451 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~--~~~~~---~~~~---~----h~~------~I~~l~-~sp~g~~l~s~s-- 451 (545)
..++|+|++++++++.. ++.|.+|++. +++.. ..+. . |.. .+..++ |+|+|++|+++.
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999888875 6899999765 55432 1222 1 122 488999 999999888765
Q ss_pred CC-----cEEEEEcC-CCCCcceEE-EEeeCCCceEEEEEcC---CCCEEEEEEcC-CeEEEEeCCCCe
Q 009059 452 DE-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 509 (545)
Q Consensus 452 dg-----~I~vwd~~-~~~~~~~i~-~~~~~~~~v~~~~~sp---~~~~l~~~~~d-g~I~iwd~~~~~ 509 (545)
++ .|.+|++. ++.. ..+. ....+...+..++|+| ++++|++++.+ +.|.+|+++...
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 33 89999996 3321 1111 2333445567889999 89999999875 799999987663
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-18 Score=174.41 Aligned_cols=260 Identities=10% Similarity=0.060 Sum_probs=181.5
Q ss_pred cceeeeeecCCceeeEEEEeecCCC-CCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccC------CccEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEH------TQWITD 310 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~-~~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h------~~~V~~ 310 (545)
+..+.+||..++..... +..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+..+ ...+.+
T Consensus 20 ~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKS---CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEEE---EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCCcEEEE---EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence 56788899888765433 33332 2578999999998665 4556899999999999888776532 233788
Q ss_pred EEEcCCCCEEEEEeCC------------CeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 311 VRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 311 l~~sp~~~~l~t~s~d------------g~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
++|+|++++|++++.+ +.|.+||+.+++. .+..+. +...+.+++|+|++. +++ ++ +.|++|
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~ 171 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM 171 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence 9999999999998865 8999999987432 123333 344688999999987 654 43 349999
Q ss_pred ECCCCceeeEEeccC-------------------------CeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE-EEEec
Q 009059 377 SINNGSCAGVFKCQS-------------------------GATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ 429 (545)
Q Consensus 377 d~~~~~~~~~~~~~~-------------------------~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~ 429 (545)
|+.+++.+..+.... ....+.+.+++....... ....+..+|..+++. ...+.
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 999998877765432 223455554431110000 011222355554432 12233
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 430 GHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 430 ~h~~~I~~l~~sp-~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
.+...+..++|+| ++++++++ ++.|.+||+.++ +.+..+.. ...+..++|+|++++|++++.++.|++||+.++
T Consensus 252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 3667889999999 99999988 889999999876 55555543 445789999999999999888899999999998
Q ss_pred eEE
Q 009059 509 KTL 511 (545)
Q Consensus 509 ~~~ 511 (545)
+.+
T Consensus 327 ~~~ 329 (349)
T 1jmx_B 327 EKV 329 (349)
T ss_dssp EEE
T ss_pred cee
Confidence 877
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=184.80 Aligned_cols=212 Identities=14% Similarity=0.158 Sum_probs=159.2
Q ss_pred CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC---------eeee-----EeccCccc
Q 009059 285 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 350 (545)
Q Consensus 285 g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~---------~~~~-----~~~~h~~~ 350 (545)
+.|++|+... . .+...+..+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688876431 1 1334578899999999999999998 8888753110 0011 11235678
Q ss_pred EEEEEEeCCCCcEEE---EEcCCCcEEEEECCCC--------ceeeEEe----ccCCeeEEEEeCC-CCEEEEEECCCeE
Q 009059 351 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 414 (545)
Q Consensus 351 V~~l~~~p~~~~ll~---s~s~dg~I~lwd~~~~--------~~~~~~~----~~~~v~~l~~sp~-~~~l~~~~~dg~I 414 (545)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.||.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999876665 7888999999998754 2222222 3567999999998 7789999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------CCceEEEEEcC
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 486 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------~~~v~~~~~sp 486 (545)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.++.|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778899999999999999999999 9999999997 3 233344333 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEeCCCC
Q 009059 487 TFPSLLVIG-CYE------TLELWNMTEN 508 (545)
Q Consensus 487 ~~~~l~~~~-~dg------~I~iwd~~~~ 508 (545)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 888775544 332 4899999764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=193.26 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=192.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-----V~~l~~sp~~~~l~t~s~d---------g~I~ 330 (545)
...+++|+|||++|+++ |+.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35679999999999886 899999999999988888777643 2447899999999998876 5667
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-cc------------------C
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQ------------------S 391 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~------------------~ 391 (545)
+||+.+++ ...+..|...+...+|+|+|+.++++ .++.|++||+.+++...... .. .
T Consensus 96 ~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 99999875 34567778889999999999887755 37899999998877554221 11 1
Q ss_pred CeeEEEEeCCCCEEEEEECCC------------------------------------eEEEEECCC---C---EEEEEec
Q 009059 392 GATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---Q---VCRLKLQ 429 (545)
Q Consensus 392 ~v~~l~~sp~~~~l~~~~~dg------------------------------------~I~i~d~~~---~---~~~~~~~ 429 (545)
....+.|+|+|++|+.+..|. .|++||+.+ + +.. .+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~ 250 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QIT 250 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EEC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Eec
Confidence 113489999999998875321 588899998 7 333 333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCC------cceEEEEeeCCCceE-----EEEEcCC
Q 009059 430 ------GHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHPT 487 (545)
Q Consensus 430 ------~h~~~I~~l~~sp~g~~l~s~s-d----g~I~vwd~~~~~~------~~~i~~~~~~~~~v~-----~~~~sp~ 487 (545)
+|...+..++|+|||++++... . ..|++||+.++.. ...+. -..+...+. ...|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999776654 2 2799999988751 11111 123444443 6789999
Q ss_pred CCEEE-EEEcC-C--eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 488 FPSLL-VIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 488 ~~~l~-~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~ 537 (545)
|+.|+ ..+.. | .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99877 56543 3 799999999888877666666766543 44665554443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-18 Score=172.26 Aligned_cols=278 Identities=10% Similarity=0.101 Sum_probs=202.7
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEeccC----
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH---- 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~----------dg~I~lwd~~~~~~~~~l~~h---- 304 (545)
+..+.+||..++... ..+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+...
T Consensus 30 d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFL---GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp GCEEEEEETTTCCEE---EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred cCeEEEEECCCCeEE---EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 557778887777543 445555555 8999999999998862 568999999999888777532
Q ss_pred --CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 305 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
......++|+|+|++|+++.. ++.|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLG 181 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence 245677999999999999874 68999999998764 554 43 22 233466788876677788889999999986
Q ss_pred C-CceeeEE------eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecCC------C----CCEEEEEE
Q 009059 380 N-GSCAGVF------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGH------K----NQVHSVCW 440 (545)
Q Consensus 380 ~-~~~~~~~------~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h------~----~~I~~l~~ 440 (545)
. ++..... ........+.+.+++..++..+.++.|+++|+.... ....+... . .....++|
T Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 5 5544221 112222334456777788888889999999997542 22222110 0 11112689
Q ss_pred cCCCCEEEEEe------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 441 NTSGEYLASVS------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 441 sp~g~~l~s~s------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
+|++..++++. .+.|.+||+.+. +.+..+..+. +..++|+|++++|++++. +.|.+||..++
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 99988777653 237999999887 7777887766 999999999999988886 99999999999
Q ss_pred --eEE-EeccCCCCeeEEEEeCCCC
Q 009059 509 --KTL-TLSAHDKLVSSLAASTVNG 530 (545)
Q Consensus 509 --~~~-~~~~h~~~V~~l~~spd~~ 530 (545)
+.+ .+..+......++++|+|+
T Consensus 336 ~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 336 EPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cceeeEEeccCCCCcEEEEecCCCC
Confidence 888 4457888899999999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=187.46 Aligned_cols=280 Identities=10% Similarity=0.054 Sum_probs=196.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCeEEEEeccCCccEE---------EEEEc--CCCCE-EEEE
Q 009059 258 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 323 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~~latg--~~dg~I~lwd~~~~~~~~~l~~h~~~V~---------~l~~s--p~~~~-l~t~ 323 (545)
.+.+|...|..++|++++-+++.. +.++...||....+.....+..|...+. ...|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788899999999887666766 5578899999655555666766766666 56665 99998 7766
Q ss_pred eC-CCeEEEEECC--C-CCeeeeEecc-----CcccEEEEEEeCCCCcEEEEEcCC----------CcEEEEECCC----
Q 009059 324 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN----------SEIRYWSINN---- 380 (545)
Q Consensus 324 s~-dg~I~vwd~~--~-~~~~~~~~~~-----h~~~V~~l~~~p~~~~ll~s~s~d----------g~I~lwd~~~---- 380 (545)
+. +..|.+|++. . +. ...+.. |...+..++|+|+|+.++++.. + ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE-EFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE-EECSSSTTCEEEEEEEEETTSTTTT
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEe-cccCCCCCCceeEEEEEECCCCccc
Confidence 54 5566677765 2 22 445554 6778999999999987775543 4 5899999988
Q ss_pred --CceeeEE-eccCCeeEEEEeCCCCEEEEEECC--------CeEEEEECC-CC---EEEEEecCCCCCEEEEEEcCCCC
Q 009059 381 --GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGE 445 (545)
Q Consensus 381 --~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~-~~---~~~~~~~~h~~~I~~l~~sp~g~ 445 (545)
++..... .....+..+.|+|+|++|+.++.+ ..|++||+. ++ .......+|...+..+.|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 5554444 334557788999999999888754 379999999 56 44444455678999999999999
Q ss_pred EEEEEe-CC--cEEEEEcCCCCCcceEEEEeeCCCc--------eEEEEEcCCCCEEEEEEcCCeEEEE--eCCCCeEEE
Q 009059 446 YLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLT 512 (545)
Q Consensus 446 ~l~s~s-dg--~I~vwd~~~~~~~~~i~~~~~~~~~--------v~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~ 512 (545)
+++++. ++ .|.+||+.++ ........+... +..++|++++..++++.. +.++|| |+.+++...
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~ 330 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD 330 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE
T ss_pred EEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE
Confidence 777777 67 5666666454 222211211111 457889999998888888 877777 777777767
Q ss_pred eccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LSAHDKLVSSL-AASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~~h~~~V~~l-~~spd~~~las~s~Dg~I~iW 544 (545)
+..|...+..+ +++.+.-++++++.+....||
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 77787778777 554333344555666555555
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=167.25 Aligned_cols=263 Identities=8% Similarity=0.057 Sum_probs=187.8
Q ss_pred CCCEEEEEe------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCC
Q 009059 274 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~----------dg~I~vwd~~~~ 337 (545)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||+++|+++.. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555655543 3679999999999999888777665 8999999999999863 678999999876
Q ss_pred CeeeeEecc------CcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeE-EeccCCeeEEEEeCCC-CEEEEE
Q 009059 338 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 408 (545)
Q Consensus 338 ~~~~~~~~~------h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~-~~~~~~v~~l~~sp~~-~~l~~~ 408 (545)
+. +..+.. +......++|+|+++.++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 64 444432 22456789999999887766544 68999999999988777 5543 33335677765 567788
Q ss_pred ECCCeEEEEECCC-CEEEEE------ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC----
Q 009059 409 AIENYISILDVET-QVCRLK------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 476 (545)
Q Consensus 409 ~~dg~I~i~d~~~-~~~~~~------~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~---- 476 (545)
+.||.+.+|++.. ++.... +..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8899999999865 544321 11222222 233456777766666 88999999875432 2222221110
Q ss_pred ------CceEEEEEcCCCCEEEEEEc-----------CCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCC
Q 009059 477 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 477 ------~~v~~~~~sp~~~~l~~~~~-----------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~D 538 (545)
.....++|+|+++.++++.. .+.|.+||+.+++.+ .+..+. +.+|+|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11123689999998888754 348999999999988 555555 999999999999998887
Q ss_pred CcEEEcC
Q 009059 539 KCVKIWK 545 (545)
Q Consensus 539 g~I~iWd 545 (545)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999996
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-17 Score=161.13 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=182.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 317 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~d------------------------g~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~ 317 (545)
-+.|.+++++|+|+++++...+ +.|.+||..+++.+..+. ++-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888776 479999999888877664 455678999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEe---------ccCcccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCceeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~---------~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~~~~~~ 387 (545)
+++++...++.|++||.......+..+ .++-.....++++|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 344557899999994456666775 689999999 557766666
Q ss_pred ecc-----------CCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEE---
Q 009059 388 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 450 (545)
Q Consensus 388 ~~~-----------~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~--- 450 (545)
... ..+..++++|+++.++++. .++.|++||..+++.+..+. .+...+..++|+| +..++..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 422 2278999999855555555 57899999999888888774 4567899999999 4333332
Q ss_pred ----e-CCcEEEEEcCCCCCcceEEEE---eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 451 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 451 ----s-dg~I~vwd~~~~~~~~~i~~~---~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
. +..|++||+.++ ..+..+ ..+...+..++++|++..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 556555 35567789999999996666666778999999754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-17 Score=182.72 Aligned_cols=289 Identities=14% Similarity=0.059 Sum_probs=195.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCC-----eEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCeEEEEeccC
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEH 304 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~-----V~~l~~spdg~~latg~~d---------g~I~lwd~~~~~~~~~l~~h 304 (545)
+..+++|+..++.. ...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++.. .+..|
T Consensus 35 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI 110 (740)
T ss_dssp TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence 45788999888864 3446666643 2447899999999998875 56779999998865 46677
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-----------------EEEEEeCCCCcEEEEE
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC 367 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~ll~s~ 367 (545)
...+..++|+|||+.||.+. |+.|.+|++.++.....+..++...+ ..+.|+|||+.+++..
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88899999999999999984 68999999987664222333433333 3489999998777654
Q ss_pred cCCC-----------------------------------cEEEEECCC---Cce--eeEEe-------ccCCeeEEEEeC
Q 009059 368 DNNS-----------------------------------EIRYWSINN---GSC--AGVFK-------CQSGATQMRFQP 400 (545)
Q Consensus 368 s~dg-----------------------------------~I~lwd~~~---~~~--~~~~~-------~~~~v~~l~~sp 400 (545)
..++ .|++||+.+ ++. ...+. +...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 2222 588899988 732 22222 223378899999
Q ss_pred CCCEEEEEEC----CCeEEEEECCCCE----EEE--Ee--cCCCCCEE-----EEEEcCCCCEEE-EEe--CC--cEEEE
Q 009059 401 RLGRILAAAI----ENYISILDVETQV----CRL--KL--QGHKNQVH-----SVCWNTSGEYLA-SVS--DE--LVRVW 458 (545)
Q Consensus 401 ~~~~l~~~~~----dg~I~i~d~~~~~----~~~--~~--~~h~~~I~-----~l~~sp~g~~l~-s~s--dg--~I~vw 458 (545)
++..++.... +..|++||+.+++ +.. .+ ..|...|. .+.|+|||+.|+ ..+ +| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 9876665543 2379999998876 221 11 34555544 788999999877 555 44 78899
Q ss_pred EcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-------CeEEEEeCCCCeEE-Eec----cCCCCeeEEEEe
Q 009059 459 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTENKTL-TLS----AHDKLVSSLAAS 526 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------g~I~iwd~~~~~~~-~~~----~h~~~V~~l~~s 526 (545)
|+.++. .. .+......+..+.. ++++.|+..+.. ..|+..++.++... .+. .....+..+.|+
T Consensus 350 ~~~~~~---~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S 424 (740)
T 4a5s_A 350 QIDKKD---CT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS 424 (740)
T ss_dssp ETTCSS---CE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred ECCCCc---eE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence 987652 22 33333445555442 446666666654 25666677665543 332 134678899999
Q ss_pred CCCCEEEEEeC
Q 009059 527 TVNGMVASASH 537 (545)
Q Consensus 527 pd~~~las~s~ 537 (545)
|++++++....
T Consensus 425 ~dg~~~~~~~s 435 (740)
T 4a5s_A 425 KEAKYYQLRCS 435 (740)
T ss_dssp TTSSEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 99997765543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-17 Score=162.24 Aligned_cols=252 Identities=11% Similarity=0.098 Sum_probs=177.2
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC---C--eEE
Q 009059 265 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 330 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~---------~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d---g--~I~ 330 (545)
.+..+++ ||++||... .++.|.+||+.+++... + ..+..++|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3666777 888887652 25689999999877543 3 568899999999999988754 3 477
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC--------------------------CCcEEEEECCCCcee
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 384 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~--------------------------dg~I~lwd~~~~~~~ 384 (545)
+|++.++.. ..... +.. +..+.|+|+++.++++... ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~-~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS-KKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE-EEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce-EEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876543 33333 334 9999999999887766532 257999999988874
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCC---------eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE- 453 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg---------~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg- 453 (545)
..+... .+..+.|+|++ .++++..++ .|.++| +++... +..+ ..+..+ +|+|++|+.++ ++
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 78899999998 666665432 456666 555433 3334 455554 89999887766 32
Q ss_pred -------cEEEEEcCCCCCcceEEEEeeCCCceEE-EEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEE
Q 009059 454 -------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 525 (545)
Q Consensus 454 -------~I~vwd~~~~~~~~~i~~~~~~~~~v~~-~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 525 (545)
.|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 577777 33 222223344567776 8999 88 88888899999999 876666666667888999999
Q ss_pred eCCCCEEEEEeCCCcE-EEc
Q 009059 526 STVNGMVASASHDKCV-KIW 544 (545)
Q Consensus 526 spd~~~las~s~Dg~I-~iW 544 (545)
+| .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 688888777654 555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-16 Score=159.48 Aligned_cols=269 Identities=8% Similarity=0.024 Sum_probs=190.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
..|.+++|++++..++....++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347788999988888777788999999 3466667777777889999999999888888899999999987664 333
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEEC------
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 410 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~------ 410 (545)
...+...+.++++++++. ++++...+ +.|.+||..++.....+. ....+..+.++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 334667899999999975 55455555 689999998876553332 2345889999999765554433
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCC-CCCcceEE--EEee--CCCceEEEE
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECIH--ELSC--TGNKFHSCV 483 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~-~~~~~~i~--~~~~--~~~~v~~~~ 483 (545)
.+.|..||..+++..... .+...+..++|+|++++|+.+. ++.|.+||+.+ +.....+. .... ....+..++
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 357888887765443322 2334678999999998665554 67999999964 22111111 1111 114678899
Q ss_pred EcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCC------CeeEEEEeCCCCEEEEEeCC
Q 009059 484 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 484 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~------~V~~l~~spd~~~las~s~D 538 (545)
+++++..+++...++.|.+||.+......+..+.. .+.+++|+||++.|+.++.+
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99999977766677899999985443334433322 68999999998777666555
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-16 Score=149.93 Aligned_cols=238 Identities=10% Similarity=0.155 Sum_probs=175.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------cCCccEEEEEE-cCCCCEEEEEeC-CCeEEE
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRV 331 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~-sp~~~~l~t~s~-dg~I~v 331 (545)
.+|-..+.+++++++++++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3556779999999999988888889999999987 56665553 34467899999 467766666543 889999
Q ss_pred EECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec---cCCeeEEEEeCCCCEEEE
Q 009059 332 WDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 407 (545)
Q Consensus 332 wd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~ 407 (545)
||. ++.. +..+. .+...+.++++.+++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++
T Consensus 105 ~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 105 YNQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp ECT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred ECC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 994 4443 44443 3446789999999975 66677778899999965 555555542 235889999999775555
Q ss_pred EECCCeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCCCCCcceEEEEeeCC--CceEE
Q 009059 408 AAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHS 481 (545)
Q Consensus 408 ~~~dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~~~~~~~i~~~~~~~--~~v~~ 481 (545)
...++.|++||.. +..+..+..+ ...+..++++++|+++++.. ++ .|.+||.. + ..+..+..+. ..+..
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD 255 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence 5568999999985 4455556433 36789999999999888887 65 99999953 3 3455554443 34789
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
++++|+++.+++ +.++.|++|++...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999999975544 77899999998654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-16 Score=149.98 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=172.6
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------cCcccEEEEEEeCCCCcEEEEEcC-CCcEEE
Q 009059 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 375 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~-dg~I~l 375 (545)
++-..+.++++++++.++++...++.|.+||.. +.. +..+. ++...+..+++.+.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 455678999999999988888889999999987 333 44442 244578999995333456656533 789999
Q ss_pred EECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe
Q 009059 376 WSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 376 wd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|| .+++.+..+... ..+..+++++++..+++...++.|.+||.. ++.+..+. .+...+..++++++|+++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 567766666432 458899999998766655668899999965 44455553 3456789999999999887776
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCCEEEEEEcCC-eEEEEeCCCCeEEEeccCC--CCeeEEEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 525 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~~~~~h~--~~V~~l~~ 525 (545)
++.|++||... ..+..+... ...+..+++++++..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344555433 25789999999998777766675 9999997654444444433 34789999
Q ss_pred eCCCCEEEEEeCCCcEEEcC
Q 009059 526 STVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 526 spd~~~las~s~Dg~I~iWd 545 (545)
+|+|+++++ +.|++|++|+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-15 Score=159.53 Aligned_cols=300 Identities=11% Similarity=0.012 Sum_probs=219.0
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCeEEEEeccCCccEEEEEEc--
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFS-- 314 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~--~~~~~~~l~~h~~~V~~l~~s-- 314 (545)
+..+.++|..++.....+. . ...+..+.|+|||++|++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~---~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLD---T-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEE---C-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEe---C-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 4567888888876554443 2 2357799999999999999999999999995 888888876544 36789999
Q ss_pred --CCCCEEEEEeC-CCeEEEEECCCCCeeeeEecc----------Ccc-cEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 315 --PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 315 --p~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~----------h~~-~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
|||++++++.. ++.|.|+|..+.+. +..+.- |.. .+..+.+++++..+++....+|.|.++|...
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~ 329 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 329 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence 69998888765 58999999988664 444331 112 5788889998888888888889999999987
Q ss_pred Cceee--EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC-----CCCCEEEEEEcCCC-CEEEEEe
Q 009059 381 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSG-EYLASVS 451 (545)
Q Consensus 381 ~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~sp~g-~~l~s~s 451 (545)
.+... .+........+.|+|++.+++++.. ++.|.++|+.+++.+..+.. |.+.-..+ ++|++ .+++++.
T Consensus 330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~ 408 (567)
T 1qks_A 330 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH 408 (567)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC
Confidence 64333 3334455778999999999888775 78999999999987766643 33222222 57874 4555554
Q ss_pred --CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------CCeEEEEeCCCC-----e-E-E
Q 009059 452 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMTEN-----K-T-L 511 (545)
Q Consensus 452 --dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-------dg~I~iwd~~~~-----~-~-~ 511 (545)
++.|.++|..+... .+.+.++......-..+.++|+++++++... .++|.+||+.+. . . .
T Consensus 409 ~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~ 488 (567)
T 1qks_A 409 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 488 (567)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence 67999999987332 4667777765544455778999999998773 359999999876 2 1 1
Q ss_pred Eec--------cCCCCeeEEEEeCCCCEEEEEeC-----CCcEEEcC
Q 009059 512 TLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 545 (545)
Q Consensus 512 ~~~--------~h~~~V~~l~~spd~~~las~s~-----Dg~I~iWd 545 (545)
.+. .....+..+.|+++|++|..+.. ++.|.|+|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 221 12457899999999997776633 67888765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-16 Score=154.87 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=173.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCCeeeeEec-cCcccEEEEEEeCC
Q 009059 305 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 359 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~d------------------------g~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~ 359 (545)
-+.+.+|+++++|+++++...+ +.|.+||..+++. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 4569999999999998888777 4799999987775 34333 44567899999999
Q ss_pred CCcEEEEEcCCCcEEEEECCCCc-eeeEEec----------cCCeeEEEEeC-CCCEEEEEE-CCCeEEEEECCCCEEEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 426 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~-~~~~~~~----------~~~v~~l~~sp-~~~~l~~~~-~dg~I~i~d~~~~~~~~ 426 (545)
+. ++++...++.|++||..... .+..+.. ...+..++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 86 66688888999999986542 4444421 12478999999 555555554 589999999 5566666
Q ss_pred EecCC----------CCCEEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCcceEEEEe--eCCCceEEEEEcCCCCEEE
Q 009059 427 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 ~~~~h----------~~~I~~l~~sp~-g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~--~~~~~v~~~~~sp~~~~l~ 492 (545)
.+... -.....++++|+ +.++++.. ++.|++||..++ ..+..+. .+...+..++|+| +..+.
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 65422 234899999998 66666555 779999999866 5555553 3456788999999 32222
Q ss_pred EE-------EcCCeEEEEeCCCCeEEEe----ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 493 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 493 ~~-------~~dg~I~iwd~~~~~~~~~----~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+. ..+..|++||+.+++.+.. .++...+..|+++|+|.++++...+++|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999988844 35777899999999998888888899999985
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-16 Score=154.26 Aligned_cols=249 Identities=17% Similarity=0.182 Sum_probs=171.5
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC---C--cEEEEEcCCCeEEEEeccCCccEEEEEE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRF 313 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d---g--~I~lwd~~~~~~~~~l~~h~~~V~~l~~ 313 (545)
+..+.+|+...+... .+ ..+.+++|||||++||.++.+ + .|.+|++.+++.......+ . +..++|
T Consensus 42 ~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w 111 (347)
T 2gop_A 42 ENTIVIENLKNNARR----FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW 111 (347)
T ss_dssp EEEEEEEETTTCCEE----EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred cceEEEEeCCCCceE----Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence 455667777766421 22 468899999999999987754 2 4888898888776555443 3 999999
Q ss_pred cCCCCEEEEEeCC---------------------------CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEE
Q 009059 314 SPSLSRLATSSAD---------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 366 (545)
Q Consensus 314 sp~~~~l~t~s~d---------------------------g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s 366 (545)
+||++.|+.++.+ ..|.+||+.++.. +..+.. . .+..+.|+|++ ++++
T Consensus 112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEE
Confidence 9999999888642 5789999987653 244443 3 78899999998 5556
Q ss_pred EcCCC---------cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEEEec
Q 009059 367 CDNNS---------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQ 429 (545)
Q Consensus 367 ~s~dg---------~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~ 429 (545)
+..+. .|+++| +++....... ..+.. ++|+|..|+.++.+ ..|++|| +++......
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 259 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD 259 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST
T ss_pred EecccccccccccccEEEeC--CCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc
Confidence 64432 355555 5554443333 33333 49999988887754 3788888 565555455
Q ss_pred CCCCCEEE-EEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE-EEEeCC
Q 009059 430 GHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~-l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I-~iwd~~ 506 (545)
.+...+.. +.|+ ++ +++++. ++.++|| +.++ .. ..+..+...|..+.|+| ..+++++.++.. .||.+.
T Consensus 260 ~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 260 EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 56778886 9999 88 777777 8899999 8743 33 33334577899999999 667777777643 666655
Q ss_pred CCeEEEeccCCCC
Q 009059 507 ENKTLTLSAHDKL 519 (545)
Q Consensus 507 ~~~~~~~~~h~~~ 519 (545)
++...+..|...
T Consensus 331 -g~~~~lt~~n~~ 342 (347)
T 2gop_A 331 -GEEKQLTDYNDP 342 (347)
T ss_dssp -SSEEECCCTTST
T ss_pred -CcEEEeccccHh
Confidence 655566666543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=162.61 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=176.4
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEE--EcCCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLS 318 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~--~sp~~~ 318 (545)
.+.+|+..++.. .....+|...+..++|+|||+.|+.++.++.|++||+.+++....+..+...+.... ++++++
T Consensus 61 ~l~~~d~~~g~~---~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~ 137 (388)
T 3pe7_A 61 NYYLLDLNTQVA---TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT 137 (388)
T ss_dssp EEEEEETTTCEE---EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEeCCCCce---EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC
Confidence 345566666542 344556666666789999999999999999999999999988777776666665444 489999
Q ss_pred EEEEE----------------------eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCCcEEEEEcC-----C
Q 009059 319 RLATS----------------------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----N 370 (545)
Q Consensus 319 ~l~t~----------------------s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~ll~s~s~-----d 370 (545)
+++.. ..+..|.+||+.++. ...+..+...+..+.|+| ++..++++... .
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVD 215 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCc
Confidence 88753 244789999999875 445555677899999999 88777655542 3
Q ss_pred CcEEEEECCCCceeeEEeccC--CeeEEEEeCCCCEEEEEEC-CC----eEEEEECCCCEEEE--EecCCCCC---EEEE
Q 009059 371 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCRL--KLQGHKNQ---VHSV 438 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~~~~-dg----~I~i~d~~~~~~~~--~~~~h~~~---I~~l 438 (545)
..|.++|+..+.......... .+..+.|+|+++.|+..+. ++ .|++||+.+++... .+.++... ...+
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 295 (388)
T 3pe7_A 216 ARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS 295 (388)
T ss_dssp CSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred ceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence 478888987665444333332 3677899999998866554 22 39999999886433 33321000 1123
Q ss_pred EEcCCCCEEEEE---------e-CCcEEEEEcCCCCCcceEEEEeeCCC-----------ceEEEEEcCCCCEEEEEEc-
Q 009059 439 CWNTSGEYLASV---------S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC- 496 (545)
Q Consensus 439 ~~sp~g~~l~s~---------s-dg~I~vwd~~~~~~~~~i~~~~~~~~-----------~v~~~~~sp~~~~l~~~~~- 496 (545)
.|+|+|+.|+.. . +..|++||+.++. +..+..+.. .+..++|+|+++.|+..+.
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp EEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred eEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 689999887753 2 5589999998752 234444444 5788899999998887775
Q ss_pred CC--eEEEEeCCC
Q 009059 497 YE--TLELWNMTE 507 (545)
Q Consensus 497 dg--~I~iwd~~~ 507 (545)
++ .|+++++..
T Consensus 372 ~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 372 HGKPALYLATLPE 384 (388)
T ss_dssp TSSCEEEEEECCG
T ss_pred CCceeEEEEECCh
Confidence 44 455555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-14 Score=138.44 Aligned_cols=275 Identities=9% Similarity=-0.029 Sum_probs=194.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
+..+...+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 34556789999999999988776667899999988 55443 223355779999999999988887778899999986 3
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
......+......+.++++.+++ .++++...++.|..||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 32222222345678999999986 45556666789999998 555443221 224588999999976555555578999
Q ss_pred EEECCCCEEEEE-ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 416 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 416 i~d~~~~~~~~~-~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.. ...........+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 334456789999999999777766 779999998 5431 11122334567899999999984444
Q ss_pred EEcCCeEEEEeCCCCeEEEe--ccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 494 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.+++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 446789999998 4554433 345577999999 88887777655554443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=173.69 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=176.6
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeE---------EEEEc--CCCCE-EEEEeC-CCcEEEEEcC--CCeEEEEecc--
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVE---------SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-- 303 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~---------~l~~s--pdg~~-latg~~-dg~I~lwd~~--~~~~~~~l~~-- 303 (545)
..++|....+.. .+.+..|...|. ...|+ |||++ |+.++. +..|.+|++. .......+..
T Consensus 48 ~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 48 RATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp EEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred cEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 445555433321 344556665655 56565 99998 776654 4567777765 2033445554
Q ss_pred ---CCccEEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CCeeeeEec-cCcccEEEEEEeCCCCcE
Q 009059 304 ---HTQWITDVRFSPSLSRLATSSAD----------RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDL 363 (545)
Q Consensus 304 ---h~~~V~~l~~sp~~~~l~t~s~d----------g~I~vwd~~~------~~~~~~~~~-~h~~~V~~l~~~p~~~~l 363 (545)
|...+.+++|+|||++|++++.+ ..|.+||+.+ +. ...+. .+...+..++|+|||+.+
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~l 202 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQA 202 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEE
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEE
Confidence 67789999999999999998877 5899999987 33 44555 566788899999999877
Q ss_pred EEEEcCC-------CcEEEEECC-CC---ceeeEEec-cCCeeEEEEeCCCCEEEEEECCC--eEEEEECCCCEEEEEec
Q 009059 364 LCSCDNN-------SEIRYWSIN-NG---SCAGVFKC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ 429 (545)
Q Consensus 364 l~s~s~d-------g~I~lwd~~-~~---~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg--~I~i~d~~~~~~~~~~~ 429 (545)
+++.... ..|++||+. ++ +....... ...+..+.|+|++..++++..++ .|++||+.+++......
T Consensus 203 a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 203 VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 7555332 479999999 56 44444443 46789999999999666666677 78888887776554333
Q ss_pred CCCCC--------EEEEEEcCCCCEEEEEeCCcEEEE--EcCCCCCcceEEEEeeCCCceEEE-EEcCCCCEEEEEEcCC
Q 009059 430 GHKNQ--------VHSVCWNTSGEYLASVSDELVRVW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE 498 (545)
Q Consensus 430 ~h~~~--------I~~l~~sp~g~~l~s~sdg~I~vw--d~~~~~~~~~i~~~~~~~~~v~~~-~~sp~~~~l~~~~~dg 498 (545)
.+... +..++|+|++++++++.++.++|| |+.++ .+..+..+...+..+ .++.+.-.+++++.+.
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~ 358 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRT 358 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCC
Confidence 33222 567899999999888877777888 54433 355666666677766 4443332233333333
Q ss_pred --eEEEEeCCCCeEEEe
Q 009059 499 --TLELWNMTENKTLTL 513 (545)
Q Consensus 499 --~I~iwd~~~~~~~~~ 513 (545)
.|++||+.+++...+
T Consensus 359 ~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 359 AYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCCceEEe
Confidence 677778888876644
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-14 Score=144.20 Aligned_cols=244 Identities=13% Similarity=0.115 Sum_probs=175.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----CeEEE
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 331 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~v 331 (545)
+..+..+...+.+++|+++|++++++..++.|.+||..+++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 45566777889999999999988888889999999998887765554567789999999999988877666 68999
Q ss_pred EECCCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCC
Q 009059 332 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 332 wd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
||..++.. ...+. .+...+.+++++|++. ++++... .+.|..||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEE-EEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 99987654 22222 2445799999999975 4445442 3567777776655544444445678999999988
Q ss_pred EEEEEE-CCCeEEEEECCC-CEEEE--------EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 404 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 404 ~l~~~~-~dg~I~i~d~~~-~~~~~--------~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|+++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999963 22111 12222 4678899999999888776 7899999974 3 344455
Q ss_pred eeCCC------ceEEEEEcCCCCEEEEEEcCC------eEEEEeCC
Q 009059 473 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 506 (545)
Q Consensus 473 ~~~~~------~v~~~~~sp~~~~l~~~~~dg------~I~iwd~~ 506 (545)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777663 45555543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-15 Score=148.60 Aligned_cols=251 Identities=10% Similarity=0.023 Sum_probs=188.3
Q ss_pred CCCcEEEEEcCCCeEEEEec------cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEE
Q 009059 283 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 356 (545)
Q Consensus 283 ~dg~I~lwd~~~~~~~~~l~------~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~ 356 (545)
.++.|.+||.++++....+. ........+.+. +++++++...++.|.+||..+++. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998876542 122446778874 445555666679999999998775 55554 3467889999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC------CeeEEEEeCCCCEEEEEE--CCCeEEEEECCCCEEEEEe
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 428 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~------~v~~l~~sp~~~~l~~~~--~dg~I~i~d~~~~~~~~~~ 428 (545)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8886 666566578999999999999888877655 5667777 456777776 3889999999999888877
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-C----------CcEEEEEcCCCCCcceEEEEeeC-CCceEEEEEcCCCCEEEEEEc
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-d----------g~I~vwd~~~~~~~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~ 496 (545)
.. ......++++|+|++++++. + +.|.+||..++ .....+... ......++|+|++++|+++..
T Consensus 169 ~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 64 34567899999999777766 4 68999999876 444444432 346899999999998888765
Q ss_pred CCeEEEEeCCCCeEEE--e-ccCCCCeeEEEEeCC-CCEEEEE----eCCCcEEEcC
Q 009059 497 YETLELWNMTENKTLT--L-SAHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~~--~-~~h~~~V~~l~~spd-~~~las~----s~Dg~I~iWd 545 (545)
.|.+||..+++... + ..+......++++|+ +.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999998887641 1 122467899999995 5555555 5688999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-16 Score=170.04 Aligned_cols=244 Identities=8% Similarity=-0.008 Sum_probs=175.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe--------
Q 009059 262 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 328 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg-----~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~-------- 328 (545)
|...+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444578899999999999876543 8999999999887543222 22677999999999999988766
Q ss_pred --------EEEEECCCCCee-eeE--eccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCC------Cc-eeeE
Q 009059 329 --------VRVWDTENPDYS-LRT--FTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 386 (545)
Q Consensus 329 --------I~vwd~~~~~~~-~~~--~~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~------~~-~~~~ 386 (545)
|++|++.++... ... ...|...+..+.|+|+++.++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876531 122 23355668899999999888766542 56899999986 43 2344
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECC----CeEEEEECCCCE--EEEEecCCCC--CEEEEEEcCCCCEEEEEe-CC--cE
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--LV 455 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~~--~~~~~~~h~~--~I~~l~~sp~g~~l~s~s-dg--~I 455 (545)
+..........|+++++.|+..+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++.. ++ .|
T Consensus 282 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 4333322233588998988887763 369999998764 1233444443 688899997777777777 76 56
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCe
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 509 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~ 509 (545)
.+|++.++ ..+..+..+...+..+.++|++..++....+ +.|++||+.+++
T Consensus 362 ~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 77787565 4556666667778899999999877655433 589999998876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-15 Score=144.65 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=177.1
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 009059 258 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 336 (545)
Q Consensus 258 ~l~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~ 336 (545)
.+..+.....+++|+|+|+ +++++..++.|.+|+..++ ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445566688999999998 7888888999999999887 556666778899999999999888777778999999977
Q ss_pred CCeeeeEeccC----cccEEEEEEeCCCCcEEEE----Ec-------------CCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 337 PDYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 337 ~~~~~~~~~~h----~~~V~~l~~~p~~~~ll~s----~s-------------~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
+... ...... ...+..++++|+|. ++++ +. ..+.|..++.. ++.............
T Consensus 100 g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 100 GEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp CCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 6642 221111 13467899999975 5545 22 13466667665 554444444455789
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECC-CCEE---EEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEE
Q 009059 396 MRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~-~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~ 471 (545)
++|+|+++.+++...++.|++||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+..
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~ 251 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGR 251 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEE
Confidence 9999999888555568899999986 4543 33333355667889999999987777 8899999975 3 55666
Q ss_pred EeeCCCceEEEEE-cCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 472 LSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 472 ~~~~~~~v~~~~~-sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+..+.. +.+++| .++++.|++++.+ .+..++.++.++.
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 666666 899999 5899988888875 5667777666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=141.94 Aligned_cols=238 Identities=9% Similarity=0.071 Sum_probs=171.3
Q ss_pred EEEEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 297 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 297 ~~~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
.+..+..+.....+++|+|+++ +++++..++.|.+|+..++ ...+..+...+.++++++++. ++++...++.|.+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLER 94 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEE
Confidence 3344555667788999999998 7788888999999999875 455566777899999999975 5556666789999
Q ss_pred EECCCCceeeEEec-----cCCeeEEEEeCCCCEEEEE----E-------------CCCeEEEEECCCCEEEEEecCCCC
Q 009059 376 WSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHKN 433 (545)
Q Consensus 376 wd~~~~~~~~~~~~-----~~~v~~l~~sp~~~~l~~~----~-------------~dg~I~i~d~~~~~~~~~~~~h~~ 433 (545)
||..+++....... ...+..++++|+|..+++. + ..+.|..++.. ++. ..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC
Confidence 99988876544322 1245679999998766652 2 13577777776 443 33445667
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~-~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
....++|+|++++|++.. ++.|.+|++. ++........+......+..++++++|+.+ ++. ++.|.+||.......
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~-~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA-GDGVHVLTPDGDELG 250 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE-TTEEEEECTTSCEEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc-CCeEEEECCCCCEEE
Confidence 789999999999986555 7799999997 332101122223345566789999999844 444 889999999744333
Q ss_pred EeccCCCCeeEEEE-eCCCCEEEEEeCCCcEEE
Q 009059 512 TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 543 (545)
Q Consensus 512 ~~~~h~~~V~~l~~-spd~~~las~s~Dg~I~i 543 (545)
.+..+.. +++++| .|+++.|++++.++.+++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 6666666 999999 589999999888876554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-15 Score=145.39 Aligned_cols=280 Identities=8% Similarity=-0.048 Sum_probs=193.2
Q ss_pred ccceeeeeecCCceeeEEEEe---ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEc
Q 009059 238 RDRVGRSAEVGKGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~---l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~s 314 (545)
.+..+.++|..++.....+.. -+........+++. +++++++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 356777788777653222100 00122346778875 45566666667999999999999988885 34668999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-----ccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCceeeEEe
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-----~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~~~~~~~ 388 (545)
++++.+++...++.|.+||..+.+. ...+.... .....+++ ++..++++.. .++.|.+||+.+++.+..+.
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 8885444444899999999998764 43433222 14556777 3456665654 48899999999999988888
Q ss_pred ccCCeeEEEEeCCCCEEEEEECC----------CeEEEEECCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCcEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAIE----------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRV 457 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~d----------g~I~i~d~~~~~~~~~~~~h-~~~I~~l~~sp~g~~l~s~sdg~I~v 457 (545)
.......+.+++++..++++..+ +.|.+||..+++....+... ......++|+|++++|+++.. .|.+
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~ 248 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWR 248 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEE
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEE
Confidence 77778899999997655544443 78999999999887766532 346899999999998887665 8999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-----cCCeEEEEeCCCCeEEEeccCCCCeeEEEE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 525 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-----~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~ 525 (545)
||..+++... ...+.........++++|++..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 249 ~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 249 MPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp EETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred EECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 9998764311 011111246688999999655566665 56799999998 766632223334455555
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-14 Score=148.67 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=194.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCCeeeeEeccCccc
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 350 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~--~~~~~~~~~~~h~~~ 350 (545)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~G-~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKIG-SE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEECC-SE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEecC-CC
Confidence 44556777778899999999999999888643 357799999999999999999999999995 5554 4555433 34
Q ss_pred EEEEEEe----CCCCcEEEEEcCCCcEEEEECCCCceeeEEecc------------CCeeEEEEeCCCCEEEEEEC-CCe
Q 009059 351 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 413 (545)
Q Consensus 351 V~~l~~~----p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~~~~~-dg~ 413 (545)
...++|+ |+|+.++++...++.|.++|..+.+.+..+... ..+..+.+++++..+++... .|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699999888888899999999999988877532 14677888888776665554 689
Q ss_pred EEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee-----CCCceEEEEE
Q 009059 414 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 484 (545)
Q Consensus 414 I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~-----~~~~v~~~~~ 484 (545)
|.++|....+. +..+. .......+.|+|+|++|+++. ++.|.++|+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 22332 445678999999999988776 779999999987 44444433 2211212 26
Q ss_pred cCCCCEEEEEE--cCCeEEEEeCCC-------CeEE-EeccCCCCeeEEEEeCCCCEEEEEeC-------CCcEEEcC
Q 009059 485 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 545 (545)
Q Consensus 485 sp~~~~l~~~~--~dg~I~iwd~~~-------~~~~-~~~~h~~~V~~l~~spd~~~las~s~-------Dg~I~iWd 545 (545)
+|++..+++.+ .++.|.++|... .+.+ .+......-..+..+|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866565554 457999999987 5565 44433333355788999998887663 34777764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-16 Score=169.27 Aligned_cols=247 Identities=10% Similarity=0.006 Sum_probs=170.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCeEEEEeccCCccE--EEEEEcCCCCEEEEEeCCCe-----
Q 009059 261 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 328 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg-----~~dg~I~lwd~~~~~~~~~l~~h~~~V--~~l~~sp~~~~l~t~s~dg~----- 328 (545)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 455568899999999999843 345689999999988651 1122222 67999999999999998776
Q ss_pred --------EEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCC-C--cEEEEECCCCceeeEEeccCCee
Q 009059 329 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 329 --------I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-g--~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
|++|++.++.. .+.....|...+..+.|+|+|+.++++...+ + .|++|+..+++..........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987652 2223334556789999999998887665533 2 67788776666555555445566
Q ss_pred EEEEeCCCCEEEEEEC----CCeEEEEECCCCEE---EEEecCC-CCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 395 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h-~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 6666 5656 655554 57899999987642 3333333 4567888888 666777776 887777765421
Q ss_pred cceEEEEeeC-CCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEec
Q 009059 466 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 514 (545)
Q Consensus 466 ~~~i~~~~~~-~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~~ 514 (545)
......+..+ ...+..+.++|++..++....+ +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1344445444 5567778899999877755443 58999999988765443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=154.85 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=173.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEE----------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD---------- 310 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~---------- 310 (545)
.+.+|+...+.. .....++...+.++.|+|||++|+.++.++.|++||+.+++.......+......
T Consensus 61 ~l~~~d~~~~~~---~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 61 NYYLLNLETQQA---VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp EEEEEETTTTEE---EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred eEEEEECCCCcE---EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC
Confidence 345566666542 1222233322334889999999999999999999999988776665545443333
Q ss_pred ---------EEEcCCCCEEEEE-----eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeC-CCCcEEEEEcCC-----
Q 009059 311 ---------VRFSPSLSRLATS-----SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN----- 370 (545)
Q Consensus 311 ---------l~~sp~~~~l~t~-----s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~~ll~s~s~d----- 370 (545)
+.|+|+++.++.+ ..+..|.+||+.++.. ..+..+...+..+.|+| ++..+++.....
T Consensus 138 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 138 KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence 3567777776654 3567899999987653 33335667899999999 666566554322
Q ss_pred CcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEEecCCCCCEEEEEEcC-
Q 009059 371 SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT- 442 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp- 442 (545)
..|++||+..++........ ..+..+.|+|++..|++++.+ +.|++||+.+++....... . ... +.|+|
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~ 292 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNF 292 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECS
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCC
Confidence 46999998766543333321 236778999999988777653 4499999998865443221 1 233 89999
Q ss_pred CCCEEEEEe-----------------CCcEEEEEcCCCCCcceEEEEeeCCC-----------ceEEEEEcCCCCEEEEE
Q 009059 443 SGEYLASVS-----------------DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 443 ~g~~l~s~s-----------------dg~I~vwd~~~~~~~~~i~~~~~~~~-----------~v~~~~~sp~~~~l~~~ 494 (545)
+|++|+++. +..|++||+.++.. . .+..+.. .+..+.|+|+++.|+.+
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C---EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E---EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 999888753 35899999987642 2 2333333 25667899999988887
Q ss_pred EcC-C--eEEEEeCCCCeEE
Q 009059 495 GCY-E--TLELWNMTENKTL 511 (545)
Q Consensus 495 ~~d-g--~I~iwd~~~~~~~ 511 (545)
+.. + .|+++|+.++...
T Consensus 369 s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 369 SDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp ECTTSSCEEEEEECCTTCC-
T ss_pred ecCCCCceEEEEEEcccccc
Confidence 764 3 5667777776655
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-13 Score=129.92 Aligned_cols=274 Identities=8% Similarity=-0.031 Sum_probs=191.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +.
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3445678999999999988877778999999987 55443 233344679999999999887777668899999988 55
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-e-ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
............+.++++.+++. ++++...++.|..||.. ++..... . ....+..+++.+++..+++...++.|.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 42222333446789999998864 55566667889999987 5544221 1 2345889999999775444445789999
Q ss_pred EECCCCEEEE-EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 417 LDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 417 ~d~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
||. +++... ....+...+..++++++|.++++.. .+.|.+||. ++. ............+..+++++++..+++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 444333 2333456789999999998777766 668999998 332 1112223345678999999999844444
Q ss_pred EcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 495 GCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..++.|..||. +++... +......+.++++.++|+++++.. . .|..+
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 45689999998 454443 333456789999999998666654 4 45443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=138.03 Aligned_cols=238 Identities=8% Similarity=-0.037 Sum_probs=167.7
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
...+++++++|++++ +...++.|.+|+..+.........+...+.++++.++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578899999999777 446788999999766544332233445688999999998666655 88999999876442 22
Q ss_pred ec-cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC
Q 009059 344 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVET 421 (545)
Q Consensus 344 ~~-~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~ 421 (545)
+. .....+.++++.+++. ++++...++.|.+|+..+....... .....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999875 6656667889999986654433221 1223578899999877555555678999999987
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.........+...+.+++++++|.++++.. ++.|.+|+..... .......+...+..++++++++.+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765543333446789999999997777766 7799999986542 122112233568999999999877777778899
Q ss_pred EEEeCCCCe
Q 009059 501 ELWNMTENK 509 (545)
Q Consensus 501 ~iwd~~~~~ 509 (545)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-13 Score=135.29 Aligned_cols=266 Identities=9% Similarity=0.005 Sum_probs=183.3
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 009059 271 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 335 (545)
Q Consensus 271 ~spdg~~latg~~--dg---~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~ 335 (545)
..|+++++++... .. .|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666653 22 8899999999998888755444 899999999999886 36789999998
Q ss_pred CCCeeeeEeccC-------cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeE-EeccCCeeEEEEeCCCC-EE
Q 009059 336 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRLG-RI 405 (545)
Q Consensus 336 ~~~~~~~~~~~h-------~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~-~~~~~~v~~l~~sp~~~-~l 405 (545)
+.+. +..+.-. ......+.|+|+++.++++... ++.|.++| .+++.+.. +..... +.+.+.+. .+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7654 3333211 1235689999999888866544 57899999 99988877 654332 45556543 45
Q ss_pred EEEECCCeEEEEECCCCEEEEEec-----CCCCCE-EEEEEcCCCCEE-EEEeCCcEEEEEcCCCCCcceEEEEee----
Q 009059 406 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC---- 474 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~-----~h~~~I-~~l~~sp~g~~l-~s~sdg~I~vwd~~~~~~~~~i~~~~~---- 474 (545)
++.+.||.+.++|. +++...... ....++ ....+.+++..+ +...++.+.+.|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 56667999999999 776653321 111221 234556665443 334477999999875421 22222221
Q ss_pred ------CCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-
Q 009059 475 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 536 (545)
Q Consensus 475 ------~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s- 536 (545)
.......+.++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1223445789999998888764 3579999999999874334455689999999999 777777
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.++.|.+||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 489999986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=143.21 Aligned_cols=271 Identities=10% Similarity=0.071 Sum_probs=191.2
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 009059 269 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 333 (545)
Q Consensus 269 l~~spdg~~latg~~-----dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd 333 (545)
....|+++.+++... ++.|.++|..+++.+..+.....+ . ++++||+++|+++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345688988888765 679999999999999988765555 4 99999999988875 367899999
Q ss_pred CCCCCeeeeEec-cC------cccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEE
Q 009059 334 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405 (545)
Q Consensus 334 ~~~~~~~~~~~~-~h------~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l 405 (545)
..+.+. +..+. +. ......+.|+|+|+.++++... ++.|.++|+.+++.+.++...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998775 44442 11 1245678999999888866543 78999999999999998875442 22333344567
Q ss_pred EEEECCCeEEEEECCC-CEEEEEecCC----CCCEE-EEEEc-CCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-----
Q 009059 406 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS----- 473 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~-~~~~~~~~~h----~~~I~-~l~~s-p~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~----- 473 (545)
++.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++...++.|++.|+.+... ..+..+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 7888899999999986 5543222111 12222 23554 678777766688999999976531 1222221
Q ss_pred -----eCCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-
Q 009059 474 -----CTGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 536 (545)
Q Consensus 474 -----~~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s- 536 (545)
........++++++++.+++... .+.|.++|+.+++.+....-...++.|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 01122335777999999888754 2479999999999984433445789999999997 666654
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
.++.|.++|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-14 Score=156.62 Aligned_cols=268 Identities=8% Similarity=-0.012 Sum_probs=181.4
Q ss_pred CCCCEEEEEeCCC-----cEEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 009059 273 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 336 (545)
Q Consensus 273 pdg~~latg~~dg-----~I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~ 336 (545)
|+|++++....++ .|.+.+...++....+ .+|...+..++|+|||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877654332 3444444444433222 23545789999999999998776543 899999998
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc----------------EEEEECCCCcee--eEEec---cCCeeE
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 395 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~----------------I~lwd~~~~~~~--~~~~~---~~~v~~ 395 (545)
++.....+. ...+..++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 765222222 223678999999988776554 433 999999887632 22222 223678
Q ss_pred EEEeCCCCEEEEEEC-----CCeEEEEECCC------CE-EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEE
Q 009059 396 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVW 458 (545)
Q Consensus 396 l~~sp~~~~l~~~~~-----dg~I~i~d~~~------~~-~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vw 458 (545)
+.|+|++++|+.... +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999888775 56899999986 42 34455556665554 4888998777665 22 69999
Q ss_pred EcCCCCCcceEEEEeeCCC--ceEEEEEcCCCCEEEEEEcCC--eEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEE
Q 009059 459 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~~~--~v~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~la 533 (545)
|+.++... ....+..+.. .+..+.|++++..+++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 2233333433 678889997777777777787 5778888667654 6666778899999999987655
Q ss_pred EE-e---CCCcEEEcC
Q 009059 534 SA-S---HDKCVKIWK 545 (545)
Q Consensus 534 s~-s---~Dg~I~iWd 545 (545)
.. + ..+.|.+||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 246777774
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-14 Score=136.57 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=163.9
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
...++++++++++++ +...++.|.+||..+... ......+...+.++++.+++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998776 446788999999865442 111123335688999999876 555555 8899999987654332
Q ss_pred EE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 386 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 386 ~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
.. .....+..+++.+++..+++...++.|.+|+..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1224688999999877555555688999998766544332223334678999999999777766 779999998765
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec-cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
. ...........+..+++++++..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999876655433 3346789999999999888888999999
Q ss_pred EcC
Q 009059 543 IWK 545 (545)
Q Consensus 543 iWd 545 (545)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=133.12 Aligned_cols=240 Identities=10% Similarity=0.054 Sum_probs=177.5
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V 351 (545)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999999 6665 6666654 3578
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-------CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 424 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-------~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~ 424 (545)
.++.+.+++..+++.+..++.|..+|. +++.+..+.... ....+.+.++++++++...++.|..||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998766644433777888886 677777765332 24456788999999888889999999998 988
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC------CceEEEEEcCCCCEEEEEEcC
Q 009059 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 425 ~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~------~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.++... ..+.++.+.++|++++++. ++.|..+|..++ +.+.++.... ..+..+...+++..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 8888754 4566788889999999888 568999999877 5566654322 237888889999866665311
Q ss_pred --------CeEEEEeC-CCCeEE-EeccCC--CCeeEE
Q 009059 498 --------ETLELWNM-TENKTL-TLSAHD--KLVSSL 523 (545)
Q Consensus 498 --------g~I~iwd~-~~~~~~-~~~~h~--~~V~~l 523 (545)
+..+++++ .+++.+ .+..+. +.|.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 23345555 355555 444322 345444
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-12 Score=127.51 Aligned_cols=257 Identities=12% Similarity=0.070 Sum_probs=180.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 304 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h------ 304 (545)
.+.++|..++... ..+.....+ .++|+|||++|+++. .++.|.+||..+++.+..+...
T Consensus 48 ~v~v~D~~t~~~~---~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGSIL---GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCeEE---EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 4566776666543 344443344 899999999998886 3678999999998888766432
Q ss_pred -CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeE-eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 305 -TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 305 -~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
......++|+|||++|+++.. ++.|.++| .+++. +.. +. ... ++.+.|++...+++.+.||.+.++|. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 123458999999999999874 47899999 87764 444 33 222 25566777777777788999999999 8
Q ss_pred CceeeEEe-----c-cCC-eeEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEecC----------CCCCEEEEEEc
Q 009059 381 GSCAGVFK-----C-QSG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWN 441 (545)
Q Consensus 381 ~~~~~~~~-----~-~~~-v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~----------h~~~I~~l~~s 441 (545)
++...... . ... .....+.++++.++..+.++.+.++|+.... .+..+.. .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 77664322 1 111 1234567776776666688999999997652 2222211 11234457889
Q ss_pred CCCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCCC
Q 009059 442 TSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTEN 508 (545)
Q Consensus 442 p~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~ 508 (545)
|+++.+++.. .+.|.++|+.+. +.+..+. .......+.|+|+++ .++++. .++.|.+||+.++
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988777754 247999999877 5666664 344689999999999 677766 4789999999999
Q ss_pred eEEEe
Q 009059 509 KTLTL 513 (545)
Q Consensus 509 ~~~~~ 513 (545)
+.+..
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 98843
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=156.53 Aligned_cols=268 Identities=12% Similarity=-0.008 Sum_probs=173.1
Q ss_pred cCCCCEEEEEeCCC---c--EEEEEcCCCeEEEEe------ccCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEECC
Q 009059 272 SPDGKLLATGGHDK---K--AVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 335 (545)
Q Consensus 272 spdg~~latg~~dg---~--I~lwd~~~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~-----s~dg~I~vwd~~ 335 (545)
+|+|++++....++ . |.+.+...++....+ .+|...+..++|+|||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888888776543 2 444454454433333 2466679999999999999843 345689999999
Q ss_pred CCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCc-------------EEEEECCCCcee--eEEec---cCCeeEE
Q 009059 336 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSCA--GVFKC---QSGATQM 396 (545)
Q Consensus 336 ~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~-------------I~lwd~~~~~~~--~~~~~---~~~v~~l 396 (545)
++... ...+... ....++|+|+++.++++. .|.. |++|++.++... ..+.. ...+..+
T Consensus 156 tg~~~~~~~~~~~--~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEGG--KYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSCC--TTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCcc--cccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 1122211 126899999998777554 4444 999999987632 22222 2357899
Q ss_pred EEeCCCCEEEEEECCC----eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcce
Q 009059 397 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 468 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg----~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~ 468 (545)
.|+|+|.+|+++..++ .|++++..++... .+..+...+....| ++|.+++... ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887765 7888877665433 33345556666667 5566444443 25899999877632112
Q ss_pred EEEEeeC-CCceEEEEEcCCCCEEEEEEcCCeEEEE--eCCCCeEEEeccC-CCCeeEEEEeCCCCEEEEEe----CCCc
Q 009059 469 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 540 (545)
Q Consensus 469 i~~~~~~-~~~v~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~~~~h-~~~V~~l~~spd~~~las~s----~Dg~ 540 (545)
...+..+ ...+..+.|+ ++..+++...++..+|| ++.......+..+ ...|..++++|+++.|+... ..+.
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223322 4567888888 66677777888866665 5444433355444 66788899999998666332 3467
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-13 Score=129.81 Aligned_cols=240 Identities=10% Similarity=0.097 Sum_probs=169.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCeEEEEec----cCCccEEEEEEcCC-CCEEEEEeCCC
Q 009059 260 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 327 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~lat-------g~~dg~I~lwd~~~~~~~~~l~----~h~~~V~~l~~sp~-~~~l~t~s~dg 327 (545)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++. ..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCC
Confidence 334456789999999988887 5678899999988777653322 25567999999999 6655544 445
Q ss_pred eEEEEECCCCCeeeeEe-cc-----CcccEEEEEEeCCCCcEEEEEcCC---------------CcEEEEECCCCceeeE
Q 009059 328 TVRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGV 386 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~-~~-----h~~~V~~l~~~p~~~~ll~s~s~d---------------g~I~lwd~~~~~~~~~ 386 (545)
.|.+||.. ++. ..+ .. ....+.++++.+++. ++++...+ +.|..||.. ++....
T Consensus 93 ~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 79999988 543 222 11 124588999999975 44455444 568888876 555444
Q ss_pred EeccCCeeEEEEe----CCCCEEEEEE-CCCeEEEEECC-CCE-----EEEEecCCC-CCEEEEEEcCCCCEEEEEe-CC
Q 009059 387 FKCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 387 ~~~~~~v~~l~~s----p~~~~l~~~~-~dg~I~i~d~~-~~~-----~~~~~~~h~-~~I~~l~~sp~g~~l~s~s-dg 453 (545)
.........++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|+++++.. ++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 4444567889999 9977776665 57899999976 443 223344443 5688999999999888876 78
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
.|.+||..++. .+..+..+...+.+++|+++++.|++++. ++.|..|++...
T Consensus 248 ~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99999987553 33344455578999999999996766654 568999998653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=153.08 Aligned_cols=245 Identities=12% Similarity=0.038 Sum_probs=165.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCe--------
Q 009059 262 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 328 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~-------- 328 (545)
|...+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33457889999999999987654 46999999998876431 12222357899999 99998887654
Q ss_pred ------EEEEECCCCCee-eeEe--ccCcccEEEEEEeCCCCcEEEEEcC----CCcEEEEECCCC--ceeeEEe-ccCC
Q 009059 329 ------VRVWDTENPDYS-LRTF--TGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 392 (545)
Q Consensus 329 ------I~vwd~~~~~~~-~~~~--~~h~~~V~~l~~~p~~~~ll~s~s~----dg~I~lwd~~~~--~~~~~~~-~~~~ 392 (545)
|++|++.++... ...+ ..+...+..+.|+|+|+.++++... ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 889999766521 1222 2333458899999999888766642 348999999877 4133333 3333
Q ss_pred eeEEEEeCCCCEEEEEECC----CeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCC
Q 009059 393 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 464 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~-~~~ 464 (545)
.... +.++++.|+..+.+ +.|.+||+.++ .....+..+...+..+.|+ ++.++++.. |+..+||.+. .+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45888998888764 45999999884 4444445455566778887 556666666 8866666554 22
Q ss_pred CcceEEEEee-CCCceEEEEEcCCCCEEEEEEc----CCeEEEEeCCCCeEEEe
Q 009059 465 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 513 (545)
Q Consensus 465 ~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~----dg~I~iwd~~~~~~~~~ 513 (545)
.....+.. ....+..+.++|++..|+.... .++|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34444543 3567888999999886664433 25899999998875544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-12 Score=122.49 Aligned_cols=236 Identities=8% Similarity=-0.006 Sum_probs=168.5
Q ss_pred eccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 301 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
+..+...+.++++.++++++++...++.|.+||.. +.........+...+.++++.+++. ++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEECCC-
Confidence 34455779999999999987777668899999988 5432222233456799999999875 55566667889999986
Q ss_pred CceeeEEe---ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 381 GSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 381 ~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
++. ..+. ....+..+++.+++..+++...++.|.+||. +++.. .....+...+..++++++|+++++.. ++.|
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 332 3333 2346889999998766665556889999999 54433 23333556799999999998888776 6799
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEE
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVA 533 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~la 533 (545)
.+||. ++.. ...........+..+++++++..+++...++.|.+||. +++... ...+...+.+++++++|++++
T Consensus 165 ~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 165 GRITE-SGDI--TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp EEECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred EEEcC-CCcE--EEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 99998 4421 11112334456889999999985555555779999999 666543 334557799999999998777
Q ss_pred EEeCCCcEEEcC
Q 009059 534 SASHDKCVKIWK 545 (545)
Q Consensus 534 s~s~Dg~I~iWd 545 (545)
+...++.|.+||
T Consensus 241 ~~~~~~~i~~~d 252 (299)
T 2z2n_A 241 TEWGANKIGRLT 252 (299)
T ss_dssp EETTTTEEEEEE
T ss_pred eccCCceEEEEC
Confidence 765677888774
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=8.7e-13 Score=132.15 Aligned_cols=275 Identities=11% Similarity=0.097 Sum_probs=185.0
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccCC----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT---- 305 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h~---- 305 (545)
..+.+.|..++.....+.. -..+ . ++++|||++|+++. .++.|.+||..+++.+..+.-..
T Consensus 59 ~~V~ViD~~t~~v~~~I~v---G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~ 133 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDG---GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 133 (386)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CEEEEEECCCCeEEEEEEC---CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence 3566677777765555443 2334 3 99999999887775 35789999999999988774321
Q ss_pred ---ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 306 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 306 ---~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
.....++|+|||++|+++.. ++.|.++|+.+.+. +.++.-. + + ..+.|.+...+++.+.||.+.+.++.+
T Consensus 134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D-C--YHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECC-S-E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C-c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence 23556899999999998874 68999999998775 5555321 1 1 223355555555667799999999876
Q ss_pred -CceeeEEecc-----CCe-eEEEEeCCCCEEEEEECCCeEEEEECCCCE--EEEEec---------C-CCCCEEEEEEc
Q 009059 381 -GSCAGVFKCQ-----SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWN 441 (545)
Q Consensus 381 -~~~~~~~~~~-----~~v-~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~---------~-h~~~I~~l~~s 441 (545)
++........ ..+ ....|.+..+.++..+.+|.|+++|+.+.. ....+. + ..+.+..++++
T Consensus 209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 5543211110 111 124665434566667779999999997653 332221 0 11233357778
Q ss_pred CCCCEEEEEe-C----------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEEc-CCeEEEEeCCCC
Q 009059 442 TSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 442 p~g~~l~s~s-d----------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~~-dg~I~iwd~~~~ 508 (545)
++++.++... + +.|.++|+.+. +.+..+.. ...++.+.++++++ .|+++.. ++.|.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9988877764 1 37999999887 55555543 34788999999997 6666554 789999999999
Q ss_pred eEEEeccCCCCeeEEEEeCC
Q 009059 509 KTLTLSAHDKLVSSLAASTV 528 (545)
Q Consensus 509 ~~~~~~~h~~~V~~l~~spd 528 (545)
+.+......+..+.|.+++|
T Consensus 365 k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCCCSSCCEEEECC
T ss_pred cEEEEecCCCCCceeEECCc
Confidence 98854444555666777776
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-13 Score=128.44 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=163.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CC
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SG 392 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~ 392 (545)
.+++|++++.|+.|.+||.++++. +..+..+. ..+.++.+.|+|+ ++++ .++.|+.||. +++.+..+... ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 457899999999999999988876 66666555 4788999999986 4543 3778999999 79999888864 35
Q ss_pred eeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 393 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
+..+.+.++++.+++.+. ++.|..+|. +++.+..+.. +......+++.++|.+|++.. ++.|.+||.. +
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G- 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G- 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence 778899999999988887 788888886 6666655541 112445667889999999988 8899999987 6
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC------CCeeEEEEeCCCCEEEEEe
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~------~~V~~l~~spd~~~las~s 536 (545)
+.+.++... ..+..+.+.++++.++++..++.|..+|..+++.+ .+..+. ..+..+...++|.++++..
T Consensus 156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 556666543 45667888999998888888889999999988887 543322 2378888899999888873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=127.62 Aligned_cols=235 Identities=8% Similarity=-0.012 Sum_probs=161.2
Q ss_pred CccEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCCeeeeEec-----cCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 305 TQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t-------~s~dg~I~vwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
-....+++|.+++.++++ ...++.|.+||..+++. ..+. ++...+.++++++++..++++.. ...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~ 93 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLG 93 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TTE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCC
Confidence 345688999999987777 56788999999877664 2222 24567899999998334554444 447
Q ss_pred EEEEECCCCceeeE-Eec-----cCCeeEEEEeCCCCEEEEEECC---------------CeEEEEECCCCEEEEEecCC
Q 009059 373 IRYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 373 I~lwd~~~~~~~~~-~~~-----~~~v~~l~~sp~~~~l~~~~~d---------------g~I~i~d~~~~~~~~~~~~h 431 (545)
|.+||.. ++.... ... ...+..+++++++..+++...+ +.|..||.. ++..... .+
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~ 170 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TA 170 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cC
Confidence 9999998 665433 221 1247899999997666555444 578888876 5443322 23
Q ss_pred CCCEEEEEEc----CCCCEEEEEe--CCcEEEEEcC-CCCC--cceEEEEeeCC-CceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 432 KNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 432 ~~~I~~l~~s----p~g~~l~s~s--dg~I~vwd~~-~~~~--~~~i~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
......++|+ ++++.|+.+. ++.|.+||+. .+.. ...+..+..+. ..+..+++++++..+++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 3457889999 9997665554 6799999986 3311 01222232232 5678899999998777777788999
Q ss_pred EEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEE-EEeCCCcEEEcC
Q 009059 502 LWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA-SASHDKCVKIWK 545 (545)
Q Consensus 502 iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~la-s~s~Dg~I~iWd 545 (545)
+||..+++.+ .+..+...+.+++|+++++.|+ +...++.|..|+
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 9999866544 4555667899999999999555 444567777664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-13 Score=134.87 Aligned_cols=266 Identities=8% Similarity=0.051 Sum_probs=185.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCC
Q 009059 273 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 337 (545)
Q Consensus 273 pdg~~latg~~d-----g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~~~ 337 (545)
++++.+++.... +.|.++|..+++.+..+.....+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466665555442 69999999999999998765565 899999999988886 3678999999987
Q ss_pred CeeeeEec-c------CcccEEEEEEeCCCCcEEEEEcC-CCcEEEEECCCCceeeEEeccCCeeEEEEeCCC-CEEEEE
Q 009059 338 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 408 (545)
Q Consensus 338 ~~~~~~~~-~------h~~~V~~l~~~p~~~~ll~s~s~-dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~ 408 (545)
+. +..+. + .......+.|+|++++++++... ++.|.+.|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 75 44432 1 11235678999999888866543 68899999999999988876432 3334433 556677
Q ss_pred ECCCeEEEEECCCCEEEEE----ecCCCCCE-EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--------
Q 009059 409 AIENYISILDVETQVCRLK----LQGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 474 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~----~~~h~~~I-~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-------- 474 (545)
+.||.+.+.+..+++.... +.....++ ..+.|.+++..++... .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 7889888888866654432 11111121 2356788888777666 78999999865421 11111110
Q ss_pred --CCCceEEEEEcCCCCEEEEEEc----------CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCc
Q 009059 475 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 540 (545)
Q Consensus 475 --~~~~v~~~~~sp~~~~l~~~~~----------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~ 540 (545)
.......++++++++.+++... .+.|.++|+.+++.+....-......|+|+||++ +|+++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888753 3479999999999883333334689999999999 888888 4899
Q ss_pred EEEcC
Q 009059 541 VKIWK 545 (545)
Q Consensus 541 I~iWd 545 (545)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-13 Score=145.91 Aligned_cols=267 Identities=12% Similarity=0.028 Sum_probs=169.8
Q ss_pred CCCCEEEEEeCCCc---EEEEE--cC---CCeEEEEe------ccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEE
Q 009059 273 PDGKLLATGGHDKK---AVLWC--TE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWD 333 (545)
Q Consensus 273 pdg~~latg~~dg~---I~lwd--~~---~~~~~~~l------~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd 333 (545)
|+|++++....++. -.||. .. .++....+ .+|...+..++|+|||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 88998887664432 45554 33 33333221 2344578899999999999887654 4699999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-------------cEEEEECCCCce--eeEEeccC---CeeE
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GATQ 395 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-------------~I~lwd~~~~~~--~~~~~~~~---~v~~ 395 (545)
+.+++. +.. ..+...+..++|+|+ +.++++...+. .|++|++.++.. ...+.... .+..
T Consensus 196 l~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 196 VADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp TTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 998775 322 112222357899999 77776654322 399999987663 22333222 3788
Q ss_pred EEEeCCCCEEEEEECCC-----eEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC----cEEEEEcCCC
Q 009059 396 MRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 463 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg-----~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg----~I~vwd~~~~ 463 (545)
+.|+|+|.+|+....++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ ++ .|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999988877543 8999999877 31344555555555554 48888887776 32 5999998764
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEEEecc-CCCCeeEEEEeCCCCEEE-EEe---
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS--- 536 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~~~~~-h~~~V~~l~~spd~~~la-s~s--- 536 (545)
. ......+..+...+..+.|. ++..+++...++..+| +++..+....+.. +...|..++++|+++.|+ +.+
T Consensus 352 ~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 352 T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 2 12233333444556677777 5556777777875555 4654444444543 467788999999987555 322
Q ss_pred CCCcEEEcC
Q 009059 537 HDKCVKIWK 545 (545)
Q Consensus 537 ~Dg~I~iWd 545 (545)
..++|++||
T Consensus 430 ~P~~i~~~d 438 (741)
T 1yr2_A 430 QPATVLALD 438 (741)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 346777775
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-12 Score=127.68 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=161.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCce
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 383 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~ 383 (545)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999987653 233332 23334 99999987666 554444 799999876655
Q ss_pred eeEE----e-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE----ecCCCCCE-E-EEEEcCCCCEEEEE-e
Q 009059 384 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV-H-SVCWNTSGEYLASV-S 451 (545)
Q Consensus 384 ~~~~----~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~----~~~h~~~I-~-~l~~sp~g~~l~s~-s 451 (545)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- . .++|+|++..|+.+ .
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 334578899999767888877788999999987754332 22222222 3 99999964444444 4
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCC---------------CceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEec
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTG---------------NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 514 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~---------------~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~ 514 (545)
++.|+.|+.... +..+.++. .....+++++++..+++-. .++.|+.||+.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 678999987542 22332222 4478999999999555545 5679999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 515 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 515 ~h---------------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++ -.....|++++++.++++-..+++|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468899999998888877778888765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-11 Score=124.99 Aligned_cols=232 Identities=9% Similarity=0.040 Sum_probs=163.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~ 341 (545)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 4688999999999888877789999999998877766554333 33 99999999999988866 788888876543 2
Q ss_pred eEe----ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE----EeccCCe--e-EEEEeCCCCEEEEEEC
Q 009059 342 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 410 (545)
Q Consensus 342 ~~~----~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~----~~~~~~v--~-~l~~sp~~~~l~~~~~ 410 (545)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 224566889999996566665 66688999999987764332 1111122 3 9999997667666654
Q ss_pred -CCeEEEEECCCCEEEEEecCCC---------------CCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEE
Q 009059 411 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 411 -dg~I~i~d~~~~~~~~~~~~h~---------------~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~ 472 (545)
.+.|+.|+.... +..+.++. .....++++++|+++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 789999998755 22333322 3588999999999777654 459999997665 2 3334
Q ss_pred eeC---------------CCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 473 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 473 ~~~---------------~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333 245789999999765555555668877765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=142.29 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=166.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEEEE-eccCCccEEEEEEcCCCCEEEEEeCCC--------
Q 009059 262 STSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADR-------- 327 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~-----~dg~I~lwd~~~~~~~~~-l~~h~~~V~~l~~sp~~~~l~t~s~dg-------- 327 (545)
|...|..++|||||++||.+. ....|++||+++++.+.. +.. .....++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 445678899999999998643 235799999999886543 211 113568999 999999988874
Q ss_pred -----eEEEEECCCCCe---eeeEecc-CcccEEEEEEeCCCCcEEEEEcC---CCcEEEEECCCCc-eeeEEeccC-Ce
Q 009059 328 -----TVRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGS-CAGVFKCQS-GA 393 (545)
Q Consensus 328 -----~I~vwd~~~~~~---~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~---dg~I~lwd~~~~~-~~~~~~~~~-~v 393 (545)
.|++|++.+... .+..... |...+..+.|+|+++.++++... ...|+++|+.++. ....+.... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999987653 1222233 44457889999999988777653 3589999998763 333333333 33
Q ss_pred eEEEEeCCCCEEEEEECC----CeEEEEECCCCEE--EEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCC
Q 009059 394 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 463 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~d----g~I~i~d~~~~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~ 463 (545)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++|++..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 77777887776653 5799999987643 234555665555 8889998888776 54 7889988743
Q ss_pred CCcceEEEEee-CCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeEEEe
Q 009059 464 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 513 (545)
Q Consensus 464 ~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 513 (545)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 2333332 33457777888888877777655 6999999988765543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-10 Score=113.40 Aligned_cols=234 Identities=8% Similarity=-0.046 Sum_probs=166.3
Q ss_pred cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc
Q 009059 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~ 382 (545)
.....+.++++.++++++++...++.|.+||.. +......+..+...+.++++.+++. ++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEECCC-CC
Confidence 345678999999999988877778999999988 5442222333446789999998875 55566667889999988 55
Q ss_pred eeeEEec---cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEE
Q 009059 383 CAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 457 (545)
Q Consensus 383 ~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~-~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~v 457 (545)
.. .+.. ...+..+++.+++..+++...++.|..||.. ++.. ..+......+.+++++++|+++++.. ++.|.+
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred eE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 43 3332 2458899999987666555558899999998 5443 33333456789999999999777666 678999
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE--eccCCCCeeEEEEeCCCCEEEEE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--~~~h~~~V~~l~~spd~~~las~ 535 (545)
||. ++.. ...........+..+++++++..+++....+.|.+||. +++... ...+...+.+++++++++++++.
T Consensus 172 ~~~-~g~~--~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKL--EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCE--EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcE--EEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 4321 11122233456889999999975554445668999998 454443 33455678999999999877776
Q ss_pred eCCCcEEEcC
Q 009059 536 SHDKCVKIWK 545 (545)
Q Consensus 536 s~Dg~I~iWd 545 (545)
..++.|.+||
T Consensus 248 ~~~~~i~~~~ 257 (300)
T 2qc5_A 248 WGANQIGRIT 257 (300)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCeEEEEC
Confidence 6678888775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=130.75 Aligned_cols=261 Identities=9% Similarity=-0.008 Sum_probs=170.8
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCeEEEEe-------ccCCccEEEEEEcCCCCEEEEEeC-----CCeE
Q 009059 264 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 329 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~--~dg~I~lwd~~~~~~~~~l-------~~h~~~V~~l~~sp~~~~l~t~s~-----dg~I 329 (545)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+..|+|.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343566665555543 22 235568999999999876665433 5789
Q ss_pred EEEECCCCCeeeeEecc------CcccEEEEEEeCCCCcEEEEEc---CCCcEEEEECCCCceeeEEeccCCe--eEEEE
Q 009059 330 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGA--TQMRF 398 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~ll~s~s---~dg~I~lwd~~~~~~~~~~~~~~~v--~~l~~ 398 (545)
.+||+.+++. +..+.. +...+..+++.+++..++++.. .++.|.+||+.+++..+.+..+... ....+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987764 343332 2245689999987666666665 6789999999988776655321111 01334
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC-cEEEEEcCC---CCC--cc---e
Q 009059 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GE---C 468 (545)
Q Consensus 399 sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg-~I~vwd~~~---~~~--~~---~ 468 (545)
.+++..+.+...++.+..|. ..+..|+|+|+|+.|+.+. ++ .|..++... +.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 44555555555666655442 2468899999999888877 44 555555321 100 00 0
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc--CCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~--h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
+. ..++......+++++++..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+.+
T Consensus 241 ~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 241 IE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp CE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred eE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 11 11233456678999999877777778899999995666543332 34568999999999888887654433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-11 Score=116.29 Aligned_cols=228 Identities=10% Similarity=0.039 Sum_probs=154.7
Q ss_pred eccCCccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 301 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 301 l~~h~~~V~~l~~sp~~-~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+..+..-..+..|++++ .++++...++.|..||..++.. ..+. ....+.++++++++. ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRVT-MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEE-CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEEe-CCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 34445566789999954 4556666788999999987653 2332 456799999999987 4433 3 5679999998
Q ss_pred CCceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-----------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCC
Q 009059 380 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 380 ~~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~ 443 (545)
+++........ ..+..+++++++..+++... .+.|+.+|.. ++... +..+....+.++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 87765443321 23678999999875554322 2355666554 33222 2223345689999999
Q ss_pred CCEEEEEe--CCcEEEEEcC--CCCCc--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccC
Q 009059 444 GEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 516 (545)
Q Consensus 444 g~~l~s~s--dg~I~vwd~~--~~~~~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h 516 (545)
++.|+.+. ++.|.+|++. ++... ..+..+.........++++++|+..++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776655 6799999984 44211 122233333456789999999986666666778999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEe
Q 009059 517 DKLVSSLAAS-TVNGMVASAS 536 (545)
Q Consensus 517 ~~~V~~l~~s-pd~~~las~s 536 (545)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 8887665444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-11 Score=115.38 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=156.8
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 261 ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 261 ~H~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
.+..-..+..|+++ +.++++...++.|..||..+++.. .+ .....+.+++++++++++++ . ++.|.+||..++..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 33344568899995 445666667899999999887653 23 24567999999999995554 4 56799999987653
Q ss_pred eee-Eecc--CcccEEEEEEeCCCCcEEEEEcC----------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 340 SLR-TFTG--HSTTVMSLDFHPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 340 ~~~-~~~~--h~~~V~~l~~~p~~~~ll~s~s~----------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
... .... ....+..+++.|+|..++.+... .+.|+.++.. ++.............++|+|+++.++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEE
Confidence 211 1111 12458899999998744422221 2344444443 44433344445578899999998776
Q ss_pred EEEC-CCeEEEEEC--CCCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCC
Q 009059 407 AAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 477 (545)
Q Consensus 407 ~~~~-dg~I~i~d~--~~~~~-----~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~ 477 (545)
++.. ++.|.+||+ .++.. ...+..+...+..++++++|++.++.. .+.|.+||..++ +.+..+.....
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~ 241 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLPVD 241 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECSSS
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECCCC
Confidence 6654 789999987 45432 223333446788999999998887776 668999998877 56667776667
Q ss_pred ceEEEEEc-CCCCEEEEEEcC
Q 009059 478 KFHSCVFH-PTFPSLLVIGCY 497 (545)
Q Consensus 478 ~v~~~~~s-p~~~~l~~~~~d 497 (545)
.+++++|. |+++.|++++..
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEBC
T ss_pred CceEEEEeCCCCCEEEEEcCC
Confidence 89999998 888888877764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=132.11 Aligned_cols=172 Identities=14% Similarity=0.121 Sum_probs=137.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-----------EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-----------~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
.+..+++++...+|++|+.+ .+++|++...+ ..... .+.. |+.|+| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865433 11222 3566 999999 89999999 889999999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
+.+... ......|...+.++.+.+. . ++++..||.|.+||+.++.... ....+++++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987653 4556667788888887754 3 5578889999999999887654 34689999999997 788999999
Q ss_pred EEEEECCCCEE--EEEe------c---CCCCCEEEEEEcCCCCEEEEEe
Q 009059 414 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 414 I~i~d~~~~~~--~~~~------~---~h~~~I~~l~~sp~g~~l~s~s 451 (545)
+++|+...+.. ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988875 5556 3 3778999999999999988744
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-10 Score=113.56 Aligned_cols=220 Identities=15% Similarity=0.085 Sum_probs=153.3
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 266 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
..+.+|+|++. ++++...++.|.+||..+++... +. ....+.+++|+++++++++. .+ .|.+||..++.. ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence 45789999754 56666678899999998876543 22 34679999999999877754 44 499999987664 222
Q ss_pred ccC-----cccEEEEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC
Q 009059 345 TGH-----STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 412 (545)
Q Consensus 345 ~~h-----~~~V~~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg 412 (545)
... ...+.+++++|++..++ +... .+.|+.++ +++.............++|+++++.++++.. ++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 211 24688999999986443 4321 24566666 4554443333345778999999887776654 68
Q ss_pred eEEEEECC--CC-E-----EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 413 YISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 413 ~I~i~d~~--~~-~-----~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
.|.+||+. ++ . ....+......+..++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEE
Confidence 99999985 55 2 2333433445678999999998877766 678999997 34 45556666666799999
Q ss_pred Ec-CCCCEEEEEEcCC
Q 009059 484 FH-PTFPSLLVIGCYE 498 (545)
Q Consensus 484 ~s-p~~~~l~~~~~dg 498 (545)
|. +++..|++++..+
T Consensus 278 f~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 278 FIGPDASRLLVTSARE 293 (326)
T ss_dssp EESTTSCEEEEEEBCT
T ss_pred EecCCCCEEEEEecCC
Confidence 98 8888787776554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-11 Score=125.81 Aligned_cols=259 Identities=13% Similarity=0.146 Sum_probs=180.5
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC-----
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH----- 304 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h----- 304 (545)
..+.+.|..++.....+..- ..+ .++++|||++|+++. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG---~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGG---FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEEC---SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEECC---CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 45677777777665555432 234 799999999888876 3678999999999998776421
Q ss_pred --CccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 305 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 305 --~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
......++|+||+++|+++.. ++.|.+.|+.+.+. +..+.--. . ....|++...+++.+.||.+.+.++.+
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 123456899999999999875 57899999998775 55444211 1 334555556666677788888888866
Q ss_pred CceeeE----EeccCC--eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecC----------CCCCEEEEEEcC
Q 009059 381 GSCAGV----FKCQSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNT 442 (545)
Q Consensus 381 ~~~~~~----~~~~~~--v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~----------h~~~I~~l~~sp 442 (545)
++.... +..... ...+.|.++++.++.....+.|.+.|........ .+.. .......++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 655422 111111 1235678898888888889999999987654221 1110 001112368899
Q ss_pred CCCEEEEEe-----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC-EEEEEE-cCCeEEEEeCCCCe
Q 009059 443 SGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 443 ~g~~l~s~s-----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~~ 509 (545)
+++.+++.. ++.|.++|+.+. +.+..+.. ......+.|+|+++ .+++.. .++.|.++|+.+++
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 988777653 237999999887 55555543 23588999999999 888888 48899999999999
Q ss_pred EEE
Q 009059 510 TLT 512 (545)
Q Consensus 510 ~~~ 512 (545)
.+.
T Consensus 405 vv~ 407 (426)
T 3c75_H 405 ELR 407 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 883
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-11 Score=118.45 Aligned_cols=234 Identities=6% Similarity=0.001 Sum_probs=158.2
Q ss_pred EEeccCCccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd 377 (545)
..+..+........|+++++ ++++...++.|..|+.. +. ...+..+...+..+++++++. ++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 33444555678899999998 56667778999999984 43 345555667899999999975 554555567899999
Q ss_pred CCCCceeeEEec-----cCCeeEEEEeCCCCEEEE----EEC-------------CCeEEEEECCCCEEEEEecCCCCCE
Q 009059 378 INNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 378 ~~~~~~~~~~~~-----~~~v~~l~~sp~~~~l~~----~~~-------------dg~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
.. ++....... ...+..+.+.++|..+++ +.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 553322211 123668999999876664 321 357888888766544332 33467
Q ss_pred EEEEEcCCCCEEEEEe-C------CcEEEEEcCCCCCcceEEEE-eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 436 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-d------g~I~vwd~~~~~~~~~i~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
..++|+|+++.|+.+. . +.|.+|++.... ......+ .........++++++|+ |+++.. +.|.+|+...
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence 8899999999777766 4 689999987542 1111111 11233456789999998 555554 4699999854
Q ss_pred CeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 508 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 508 ~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
.....+..+. .+.+++|+++++.|..++.++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4433444443 6899999999998888888776554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-10 Score=111.97 Aligned_cols=220 Identities=9% Similarity=0.024 Sum_probs=148.4
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 307 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 307 ~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
...+++|+|++. ++++...++.|.+||..++.. ..+. ....+.+++|.+++. ++++. .+ .|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEE
Confidence 356788999754 556666788999999987643 3332 346799999999975 44343 33 49999998887654
Q ss_pred EEecc-----CCeeEEEEeCCCCEEEEEEC------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C
Q 009059 386 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 452 (545)
Q Consensus 386 ~~~~~-----~~v~~l~~sp~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d 452 (545)
..... ..+..+.+++++..+++... .+.|+.++ +++..... .+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee-CCCcccCCeEEcCCCCEEEEEECCC
Confidence 33221 23788999999875554432 25677777 45543322 2334578999999998776665 6
Q ss_pred CcEEEEEcC--CC-CCc--ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe
Q 009059 453 ELVRVWSIG--SG-SKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 526 (545)
Q Consensus 453 g~I~vwd~~--~~-~~~--~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 526 (545)
+.|.+||+. ++ ... ..+..+.........+++++++.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 211 2232332234567889999999866666567899999984 5444 555566679999998
Q ss_pred -CCCCEEEEEe
Q 009059 527 -TVNGMVASAS 536 (545)
Q Consensus 527 -pd~~~las~s 536 (545)
++++.|+.++
T Consensus 280 g~d~~~L~vt~ 290 (326)
T 2ghs_A 280 GPDASRLLVTS 290 (326)
T ss_dssp STTSCEEEEEE
T ss_pred cCCCCEEEEEe
Confidence 8887665544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.4e-11 Score=116.70 Aligned_cols=231 Identities=11% Similarity=0.119 Sum_probs=158.9
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 260 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. +.
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 34445577899999998 5667777899999997 444 34455566779999999999977666666889999986 44
Q ss_pred eeeeEeccC-----cccEEEEEEeCCCCcEEEE----EcC-------------CCcEEEEECCCCceeeEEeccCCeeEE
Q 009059 339 YSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQM 396 (545)
Q Consensus 339 ~~~~~~~~h-----~~~V~~l~~~p~~~~ll~s----~s~-------------dg~I~lwd~~~~~~~~~~~~~~~v~~l 396 (545)
. ..+..+ ...+..+++.++|. ++++ |.. .+.|+.||..+++..... .......+
T Consensus 118 ~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 118 A--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp E--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred E--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 2 222211 13467899999975 5544 321 256888888777655444 44567889
Q ss_pred EEeCCCCEEEEEECC------CeEEEEECCCCEE--EEEe-cCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcc
Q 009059 397 RFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 467 (545)
Q Consensus 397 ~~sp~~~~l~~~~~d------g~I~i~d~~~~~~--~~~~-~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~ 467 (545)
+|+|++..|+++... +.|++|++..... ...+ ......+..++++++|++.++. .+.|.+|+.. + .
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g---~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G---Q 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---C
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---C
Confidence 999999988888765 7899999876431 1111 1123455678999999965554 3459999974 3 4
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.+..+.... .+.+++|.++++.|++++.+ .|+.++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 455555444 58899999999988888875 454444
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-12 Score=125.22 Aligned_cols=266 Identities=12% Similarity=0.062 Sum_probs=178.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccC------
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------ 304 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h------ 304 (545)
.+.+.|..++.....+. .-..+ .+.|+||+++|+++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~---vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL---GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEE---ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEe---CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 45566777766554433 22334 799999999998886 3688999999999999888643
Q ss_pred -CccEEEEEEcCCCCEEEEEeC--CCeEEE--EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 305 -TQWITDVRFSPSLSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 305 -~~~V~~l~~sp~~~~l~t~s~--dg~I~v--wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
......++|+|||++|+++.. +..|.+ +|+.+ +..+.- .+. +.+.|++...+++.+.|+.+.+.|+.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 123567999999999999875 457888 98876 233321 111 22456666677677788888888988
Q ss_pred C-----Cceee----EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC--EEEEEecCC----------CCCEEEE
Q 009059 380 N-----GSCAG----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSV 438 (545)
Q Consensus 380 ~-----~~~~~----~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h----------~~~I~~l 438 (545)
+ ++... .+....... . .++++.++..+. +.|.+.|+.+. +.+..+... ......+
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred cccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence 6 43321 111111122 3 677777777777 99999999754 233222111 0111226
Q ss_pred EEcCCCCEEEEEe--C--------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE-EE-cCCeEEEEeCC
Q 009059 439 CWNTSGEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IG-CYETLELWNMT 506 (545)
Q Consensus 439 ~~sp~g~~l~s~s--d--------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~-~~-~dg~I~iwd~~ 506 (545)
+++|+++.++++. . +.+.++|+.+. +.+..+... .....++|+|+++++++ .. .++.|.++|+.
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 8999998777643 2 35679999887 455555432 26889999999985544 44 48999999999
Q ss_pred CCeEEEeccCCCCeeEEEEeC
Q 009059 507 ENKTLTLSAHDKLVSSLAAST 527 (545)
Q Consensus 507 ~~~~~~~~~h~~~V~~l~~sp 527 (545)
+++.+....-......+++.+
T Consensus 346 t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 346 SDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp SCEEEEECCCCSCCCEEECCC
T ss_pred CCcEEEEEECCCCCCEEEeec
Confidence 999995544455566777654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.9e-10 Score=111.61 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=164.7
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE--
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 351 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-- 351 (545)
++..|++++.++.|..+|..+++.+................ +..++.++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 35577788889999999999999887665443222122222 45788888999999999998875 33333221111
Q ss_pred ---EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee--------EEEEeC--CCCEEEEEECCCeEEEEE
Q 009059 352 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--------QMRFQP--RLGRILAAAIENYISILD 418 (545)
Q Consensus 352 ---~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~--------~l~~sp--~~~~l~~~~~dg~I~i~d 418 (545)
...... +. .++.+..++.|..+|..+++.+.......... .+...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 44577778999999999999887776432100 010111 247788888899999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-CCCceEEEEEcCCCCEEEEEEc
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~-~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
.++++.+..... .....+... +..|+.++ ++.|..+|..++ +.+..... ....+..... .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999988876653 334455443 45555555 889999999888 34444331 1122222222 2456889999
Q ss_pred CCeEEEEeCCCCeEE-EeccCCCCeeE-EEEeCCCCEEEEEeCCCcEEEcC
Q 009059 497 YETLELWNMTENKTL-TLSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 497 dg~I~iwd~~~~~~~-~~~~h~~~V~~-l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.|+++|..+++.+ ........+.. ... .+..|+.++.||.|..||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 999999999999987 33332333322 222 256788899999999875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.2e-11 Score=119.34 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=164.0
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCCeeeeEeccC-------c
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 348 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~vwd~~~~~~~~~~~~~h-------~ 348 (545)
.|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+.-. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999998766666 799999999999886 368999999999876 5555422 1
Q ss_pred ccEEEEEEeCCCCcEEEEEcC-CCcEEE--EECCCCceeeEEeccCCeeEEEEeCCCC-EEEEEECCCeEEEEECCC---
Q 009059 349 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILDVET--- 421 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~-dg~I~l--wd~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~I~i~d~~~--- 421 (545)
.....+.++|+++.++++... +..|.+ +|+.+ +..+..... +.+.|++. .+++.+.||.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 245689999999888866543 467888 99877 455543322 22334433 445566788888999987
Q ss_pred --CEEEEE----ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeC----------CCceEEEEEc
Q 009059 422 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFH 485 (545)
Q Consensus 422 --~~~~~~----~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~----------~~~v~~~~~s 485 (545)
++.... +.....+. .+...+.++++.. +.|.+.|+..... ..+..+... ......++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 433211 11112333 3333444455555 8899999865321 122211110 0111226899
Q ss_pred CCCCEEEEEEc-C--------CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC-EEEEEe-CCCcEEEcC
Q 009059 486 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 486 p~~~~l~~~~~-d--------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~-~las~s-~Dg~I~iWd 545 (545)
|+++.++++.. . +.+.++|+.+++.+....-......|+|+||++ ++++.. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99998888654 2 367799999999884333333689999999998 566666 589999986
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-10 Score=122.99 Aligned_cols=263 Identities=12% Similarity=0.090 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-----------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|.-+|..+|+.+..+...... ...+++ ++..|++++.|+.|..+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 456777777899999999999999877543210 112333 456888889999999999999886 444
Q ss_pred eccC-c----ccEE-EEEEeCCCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccCCe-------------------
Q 009059 344 FTGH-S----TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 393 (545)
Q Consensus 344 ~~~h-~----~~V~-~l~~~p~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~~v------------------- 393 (545)
+..+ . ..+. ...+. +..+++..+ .++.|+.||..+++.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 4332 1 1111 11112 234443332 2689999999999998877642211
Q ss_pred --------------eEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCEEEEEecC--CC------
Q 009059 394 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 432 (545)
Q Consensus 394 --------------~~l~~sp~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~------ 432 (545)
..+.++++++.++++..++ .|..+|.++++.+..++. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899989988887664 599999999999887664 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-----------Cce-----------------
Q 009059 433 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 479 (545)
Q Consensus 433 -~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-----------~~v----------------- 479 (545)
.....+....+| .+|+.++ +|.|+++|..+++ .+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233333467 5777777 8999999999884 343332111 111
Q ss_pred -------EEEEEcCCCCEEEEEEcC-------------------------------------------CeEEEEeCCCCe
Q 009059 480 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 509 (545)
Q Consensus 480 -------~~~~~sp~~~~l~~~~~d-------------------------------------------g~I~iwd~~~~~ 509 (545)
..++++|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889988888776432 689999999999
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+-...+...+....+..++.+++.++.||.+++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 883333555566666778888999999999999986
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-14 Score=145.49 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcc-cEE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 352 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~-~V~ 352 (545)
++..|++++.|+.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 567899999999999999999999988876 4555555666787888888999999999987764 333332221 110
Q ss_pred -EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC
Q 009059 353 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 353 -~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h 431 (545)
+..+. .+ ..+++++.++.|+.||..+|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 01111 22 345577779999999999999888776543 2345667888999999999999999998766554321
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE--EEcCCeEEEEeC
Q 009059 432 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 505 (545)
Q Consensus 432 ~~~I~~l~~sp~----g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~--~~~dg~I~iwd~ 505 (545)
. ....++..+ +.+++...++.|+.||..++ +.+.........+....+++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122233332 44444334999999999887 445555433332333445556542110 011334556665
Q ss_pred CCCe
Q 009059 506 TENK 509 (545)
Q Consensus 506 ~~~~ 509 (545)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-08 Score=96.85 Aligned_cols=247 Identities=9% Similarity=0.010 Sum_probs=160.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEE-----EEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcc
Q 009059 276 KLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 349 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~-----~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~ 349 (545)
.+|+.+.. +.|+.+++...... ..+......+..++|++++..|+.+. .++.|.++++..... ...+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 47888887754321 12222234578999999766665554 578999999976542 223322235
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 425 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~ 425 (545)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 68899999987778877777889999998754332222222 457899999987887777653 68989988643322
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEE
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 502 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~i 502 (545)
......-.....+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222335688999999887776666 669999998653 2222222 23344566654 456666665 469999
Q ss_pred EeCCCCeEE-EeccCC-CCeeEEEEeCCCC
Q 009059 503 WNMTENKTL-TLSAHD-KLVSSLAASTVNG 530 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~-~~V~~l~~spd~~ 530 (545)
+|..+++.+ .+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 999998877 443222 3578888888764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=126.52 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=156.7
Q ss_pred cCCccEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-------
Q 009059 303 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 370 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s-----~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------- 370 (545)
+|...+..++|+|||++||.+. ....|++||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 4566788999999999988543 2357999999988742222221 113578899 988887665432
Q ss_pred -----CcEEEEECCCCce--eeEEecc----CCeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCE-EEEEecCCCCC
Q 009059 371 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAI----ENYISILDVETQV-CRLKLQGHKNQ 434 (545)
Q Consensus 371 -----g~I~lwd~~~~~~--~~~~~~~----~~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~-~~~~~~~h~~~ 434 (545)
..|++|++.+... ...+... .....+.|+|++.+|+.... .+.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987653 2233222 23678999999998876553 2589999998763 33445555555
Q ss_pred EEEEEEcCCCCEEEEEe--C---CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCC
Q 009059 435 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 506 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~s--d---g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~ 506 (545)
.... |+++|..|+..+ + +.|.++|+.++... ....+..+...+. .|++++.+|+....++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 5555 566666555444 3 47999999876431 1234445555554 8999999888777655 79999998
Q ss_pred CCeEEEec-cCCCCeeEEEEeCCCCEEEEEeCC----CcEEEcC
Q 009059 507 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 545 (545)
Q Consensus 507 ~~~~~~~~-~h~~~V~~l~~spd~~~las~s~D----g~I~iWd 545 (545)
++....+. ...+.+..+.++++++.|+....+ +.|..||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 77655443 345667788888888766554433 6677664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-10 Score=123.12 Aligned_cols=265 Identities=11% Similarity=0.107 Sum_probs=173.9
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|+.+|..+|+.+..+..+... + ..+.+ .+..|++++.|+.|..+|..+++.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777788899999999999999887543221 0 11222 3567888999999999999998864333
Q ss_pred ecc-CcccEEEEEEeC--CCCcEEEEEc-----CCCcEEEEECCCCceeeEEeccC------------------------
Q 009059 344 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 391 (545)
Q Consensus 344 ~~~-h~~~V~~l~~~p--~~~~ll~s~s-----~dg~I~lwd~~~~~~~~~~~~~~------------------------ 391 (545)
-.. +......+...| .+..+++..+ .+|.|+.||..+++.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 222 111111111111 1234443322 36899999999999988775310
Q ss_pred --------CeeEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCEEEEEecC--CC-------CCE
Q 009059 392 --------GATQMRFQPRLGRILAAAIENY-------------------ISILDVETQVCRLKLQG--HK-------NQV 435 (545)
Q Consensus 392 --------~v~~l~~sp~~~~l~~~~~dg~-------------------I~i~d~~~~~~~~~~~~--h~-------~~I 435 (545)
....+.++++.+.++++..++. |..+|.++++.+..++. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 0125788998899988887763 99999999999887764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-----------------------------------
Q 009059 436 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 476 (545)
Q Consensus 436 ~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~----------------------------------- 476 (545)
.......+|+ +|+.++ +|.++++|..+++. +.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2223223564 677777 89999999998843 32111100
Q ss_pred ----CceEEEEEcCCCCEEEEEEc---------------------------------------------CCeEEEEeCCC
Q 009059 477 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 507 (545)
Q Consensus 477 ----~~v~~~~~sp~~~~l~~~~~---------------------------------------------dg~I~iwd~~~ 507 (545)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 00112678888887776532 36799999999
Q ss_pred CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++.+ .+. +...+..-.+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~-~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVP-YVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEcc-CCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 9988 443 333344446667788999999999999986
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-11 Score=119.57 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=130.5
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-----------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-----------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
.++.+++++... ++++|+.+ .+++|++...+ ......... +..++| ++..|+++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999865 45566666 57779865332 223445566 999999 77888888 889999999
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+.. .. +...|.+++|+|+| ++++..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98765555566677889988887653 55555 99999999987632 22 34579999999999 7889999
Q ss_pred CeEEEEeCCCCeE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEEe
Q 009059 498 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 498 g~I~iwd~~~~~~--~-~~------~---~h~~~V~~l~~spd~~~las~s 536 (545)
|.+++|+....+. . ++ . +|...|.+|.|.+++.+|++-+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999988774 3 44 2 4788999999999999888744
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-09 Score=107.74 Aligned_cols=254 Identities=9% Similarity=0.046 Sum_probs=163.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccC---------CccEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h---------~~~V~-~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
+..|++++.++.|..||.++++.+...... ...+. .+.. ++..+++++.++.|..+|..+++. +..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTV-AWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCE-EEEE
Confidence 557778888899999999999988666542 12232 2222 456788888999999999998876 3333
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee------EEEEeCCCCEEEEEECCCeEEEEE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~------~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
............. + . .++.++.++.|..+|..+++.+..+.....+. ..... ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222211122222 2 3 45577789999999999999988877544331 22222 46788888899999999
Q ss_pred CCCCEEEEEecCCCCC----EE---EEEEcC--CCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCC
Q 009059 419 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~----I~---~l~~sp--~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
..+++.+......... +. .+...| .+..++.++ ++.+..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999888766532110 00 011111 244556666 889999999887 3343333 223444444 35
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-Eec-cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..+++++.++.|..+|..+++.+ ... .....+...... +..|+.++.+|.|.+||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 67889999999999999999887 333 122233333332 56788888888888774
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-09 Score=108.57 Aligned_cols=223 Identities=11% Similarity=0.061 Sum_probs=156.5
Q ss_pred EEc--CCCCEEEEE-eCCCcEEEEEcCCC----eEEEEec------c-CCccEEEEEEcCCCCEEEEEeCC------CeE
Q 009059 270 HFS--PDGKLLATG-GHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 329 (545)
Q Consensus 270 ~~s--pdg~~latg-~~dg~I~lwd~~~~----~~~~~l~------~-h~~~V~~l~~sp~~~~l~t~s~d------g~I 329 (545)
.++ +++++|++. ..++.|.|+|+.+. +...+++ . ....-..+...|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 788877665 46789999999765 6666663 1 12245678889999 77776555 789
Q ss_pred EEEECCCCCeeeeEeccCc---ccEEEEEEeCCCCcEEEEEc-------------------CCCcEEEEECCCCceeeEE
Q 009059 330 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 387 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~ll~s~s-------------------~dg~I~lwd~~~~~~~~~~ 387 (545)
.++|..+.+. +..+.... ..-+.+-|+|+++.++ +.. .+..|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998775 55554221 2244678899987555 543 3689999999999888888
Q ss_pred ecc---CCeeEEEE--eCCCCEEEEEEC------CCeEEEEECCCCEE--EEE--ecCC----------------CCCEE
Q 009059 388 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 436 (545)
Q Consensus 388 ~~~---~~v~~l~~--sp~~~~l~~~~~------dg~I~i~d~~~~~~--~~~--~~~h----------------~~~I~ 436 (545)
... .....+.| +|++.++++++. ++.|.+|....+.. ... +... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 764 23556666 999998888774 56887766554421 111 1110 24578
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCC--------------ceEEEEEcCCCCEEEEEE
Q 009059 437 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~--------------~v~~~~~sp~~~~l~~~~ 495 (545)
.|.+++||++|.++. .+.|.+||+......+.+..+...+. ....+.++|+|++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 67999999975544456655554321 358899999999999998
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-10 Score=112.20 Aligned_cols=259 Identities=10% Similarity=0.003 Sum_probs=170.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
..+.++.+.+++.+ ..++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. +.. ...
T Consensus 60 ~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~ 131 (330)
T 3hxj_A 60 IIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWR 131 (330)
T ss_dssp EEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEE
T ss_pred CcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEE
Confidence 34567777777754 444444 888885 555554443333223333333 5568888889999999988 554 444
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-CeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
+..+...+.++...+++. ++ .++.++.|..||.. ++....+.... .+..+.+.+++. +++++ +.|..|| .++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDG 204 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTS
T ss_pred EcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCC
Confidence 444445566666666654 44 56778999999998 77776665433 355666766644 55555 8899999 777
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
+.+..+......+.++...++|.+.+...++.|..+|. ++ ..+..+......+..+.+.+++. |++++.++.|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~ 279 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYA 279 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEE
T ss_pred cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEE
Confidence 77777766667788889988888777666788888874 33 33444444444444556665664 888888889999
Q ss_pred EeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 503 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+|. +++.+ .+......+.++...+++. |..++.+|.+++.
T Consensus 280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 996 55554 4444456677788777776 5568889988764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-09 Score=115.98 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccC--CccEEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h--~~~V~~l~~sp---~~~~l~t~s------~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.|+.|+.+|.++|+.+..+... ......+..+| ++ .+++++ .+|.|..||..+++...+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888889999999999999998776532 11111111122 44 444443 3789999999998863332
Q ss_pred ecc-C-----------------------------cccEEEEEEeCCCCcEEEEEcCCC-------------------cEE
Q 009059 344 FTG-H-----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 374 (545)
Q Consensus 344 ~~~-h-----------------------------~~~V~~l~~~p~~~~ll~s~s~dg-------------------~I~ 374 (545)
... + ......+++.|+.. +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 210 0 00112567888754 555666665 399
Q ss_pred EEECCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCC-CC------
Q 009059 375 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 434 (545)
Q Consensus 375 lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~------ 434 (545)
.||..+++.+..+.... ......+..++. .++.++.+|.++++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998876421 112222223443 57788889999999999998874432111 00
Q ss_pred --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 009059 435 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 451 (545)
Q Consensus 435 --------------------------------I~~l~~sp~g~~l~s~s------------------------------- 451 (545)
-..++++|+..+|++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 11267888887777652
Q ss_pred ---------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eecc
Q 009059 452 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 515 (545)
Q Consensus 452 ---------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~ 515 (545)
++.|+.||+.++ +.+-.+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 256999999888 4555554433 2333455667778999999999999999999998 4443
Q ss_pred -CCCCeeEEEEeCCCC-EEEEEe
Q 009059 516 -HDKLVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 516 -h~~~V~~l~~spd~~-~las~s 536 (545)
+.....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 322234467778887 555443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-09 Score=118.56 Aligned_cols=253 Identities=10% Similarity=0.040 Sum_probs=167.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccC-C----ccEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCCeee
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 341 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h-~----~~V~~-l~~sp~~~~l~t~s~------dg~I~vwd~~~~~~~~ 341 (545)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+.. ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888889999999999999999887654 1 11111 111 2345555543 7999999999988633
Q ss_pred eEeccCc-------------------------------ccEEEEEEeCCCCcEEEEEcCCC-------------------
Q 009059 342 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 371 (545)
Q Consensus 342 ~~~~~h~-------------------------------~~V~~l~~~p~~~~ll~s~s~dg------------------- 371 (545)
+...... .....++++|++..++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 3221110 0112567888865544 554443
Q ss_pred cEEEEECCCCceeeEEeccC----------CeeEEEEeCCC---CEEEEEECCCeEEEEECCCCEEEEEecCCCC-----
Q 009059 372 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 433 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~----- 433 (545)
.|..+|..+++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998876421 12233333466 5678888899999999999998876642210
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 009059 434 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 452 (545)
Q Consensus 434 ------~I------------------------~~l~~sp~g~~l~s~s-d------------------------------ 452 (545)
.+ ..++++|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1467889888877753 2
Q ss_pred -------------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec-cCC
Q 009059 453 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 517 (545)
Q Consensus 453 -------------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~ 517 (545)
+.|..||+.++ +.+-.+.. ...+....+...+..+++++.++.+++||..+++.+ .+. ++.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999887 44444442 334445556677888899999999999999999998 443 333
Q ss_pred CCeeEEEEeCCCCEEE
Q 009059 518 KLVSSLAASTVNGMVA 533 (545)
Q Consensus 518 ~~V~~l~~spd~~~la 533 (545)
....-+.+..+|+.++
T Consensus 520 ~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYV 535 (677)
T ss_dssp CCSCCEEEEETTEEEE
T ss_pred cccCCEEEEeCCEEEE
Confidence 3334456677887443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=111.47 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=168.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCc
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 348 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~ 348 (545)
..+..++ .|..++.++.|..|| .+++.......+...+.++...+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4444555 455667788999999 88888777665556667788877665 5555444 888886 3432 33332222
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC-eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
.......+. + .. ++.++.++.|..+|.. ++.......... +..+...++ +.+++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~-g~l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-DI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSED-GTIYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-TE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT-SCEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-CE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCC-CEEEEEcCCCEEEEECCC-CCEeEE
Confidence 222233333 3 33 4467778999999998 777666654433 455566655 557778888999999999 877776
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+......+.++...+++.++++. +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 66556677788888888866655 8899999 555 44445554556678888888875 77788888999998644
Q ss_pred CeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 508 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 508 ~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.....+......+..+.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4443444444445556665555 456677777777664
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-09 Score=113.31 Aligned_cols=257 Identities=10% Similarity=0.029 Sum_probs=176.8
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecc---------------------------------C------CccEEEEEEcC---
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------H------TQWITDVRFSP--- 315 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~---------------------------------h------~~~V~~l~~sp--- 315 (545)
+.+|+..|.|+|+-+.+++.+..+.- + .+....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888777765420 0 11122344554
Q ss_pred --CCCEEEEEeC-CCeEEEEECCCCCeeeeEec-cCcccEEEEEE-e-CCCCcEEEEE-----------------cCCCc
Q 009059 316 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 372 (545)
Q Consensus 316 --~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~-~-p~~~~ll~s~-----------------s~dg~ 372 (545)
||++|+.... +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++ -.++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55799999998764 44222 12345778887 4 8988887664 33568
Q ss_pred EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC--------------------------------------eE
Q 009059 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 414 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--------------------------------------~I 414 (545)
+.++|..+.+.+..+........++++|+++++++.+.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999888766778899999999999888543 36
Q ss_pred EEEECCC--CEE-EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC--------CcceEEEEeeCCCceEE
Q 009059 415 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 481 (545)
Q Consensus 415 ~i~d~~~--~~~-~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~--------~~~~i~~~~~~~~~v~~ 481 (545)
.+.|.++ ++. +..+.. .....++.++|||++++++. +++|.++|+.+.. ....+.....-+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 333332 23567899999999999988 7799999998541 01122222234566889
Q ss_pred EEEcCCCCEEEE-EEcCCeEEEEeCCC----------CeEE-EeccCCCC-----eeEEEEeCCCCEEEEEeC
Q 009059 482 CVFHPTFPSLLV-IGCYETLELWNMTE----------NKTL-TLSAHDKL-----VSSLAASTVNGMVASASH 537 (545)
Q Consensus 482 ~~~sp~~~~l~~-~~~dg~I~iwd~~~----------~~~~-~~~~h~~~-----V~~l~~spd~~~las~s~ 537 (545)
++|+++| ++++ .-.++.|.+||+.. ...+ .+..|-.+ -.++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 5554 44577999999976 4444 44444332 123356899999998763
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-08 Score=102.11 Aligned_cols=219 Identities=9% Similarity=-0.000 Sum_probs=147.8
Q ss_pred CCCCEEEEE-eCCCeEEEEECCCC-C--eeeeEec------c-CcccEEEEEEeCCCCcEEEEEcCC------CcEEEEE
Q 009059 315 PSLSRLATS-SADRTVRVWDTENP-D--YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWS 377 (545)
Q Consensus 315 p~~~~l~t~-s~dg~I~vwd~~~~-~--~~~~~~~------~-h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd 377 (545)
.++++|+.. -.++.|.|+|+.+. . ...+++. . .......+.+.|++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 777777654 55789999999643 1 1233331 0 11245567788997 55565444 7899999
Q ss_pred CCCCceeeEEeccCC----eeEEEEeCCCCEEEEEE-------------------CCCeEEEEECCCCEEEEEecCCC--
Q 009059 378 INNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQGHK-- 432 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~----v~~l~~sp~~~~l~~~~-------------------~dg~I~i~d~~~~~~~~~~~~h~-- 432 (545)
..+.+.+..+..... ...+.|+|+++.+++.. ....|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 999999998874422 34588899989777774 36899999999998888776521
Q ss_pred CCEEEEEE--cCCCCEEEEEeC-------CcEEEEEcCCCCCcceEEEE--eeC----------------CCceEEEEEc
Q 009059 433 NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SCT----------------GNKFHSCVFH 485 (545)
Q Consensus 433 ~~I~~l~~--sp~g~~l~s~sd-------g~I~vwd~~~~~~~~~i~~~--~~~----------------~~~v~~~~~s 485 (545)
.....+.| +|++++++++.. +.|.+|....+. ......+ ... ......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23455655 999998777654 477777665431 2222222 110 2456788999
Q ss_pred CCCCEEEEEEcC-CeEEEEeCCC---CeEE-Eec-c-C------------CCCeeEEEEeCCCCEEEEEe
Q 009059 486 PTFPSLLVIGCY-ETLELWNMTE---NKTL-TLS-A-H------------DKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 486 p~~~~l~~~~~d-g~I~iwd~~~---~~~~-~~~-~-h------------~~~V~~l~~spd~~~las~s 536 (545)
+|+++|+++... +.|.+||+.. .+.+ .+. + . .+....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988874 5999999853 2333 221 1 1 01368899999999999887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-10 Score=110.28 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.0
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEe-------ccCcccEEEEEEeCCCCcEEEEEcC-----CC
Q 009059 306 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 371 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~-------~~h~~~V~~l~~~p~~~~ll~s~s~-----dg 371 (545)
..+..|+++++++++++... ++.++||.+.++. +..+ ..+-..+..+++++++. |+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999999888642 3435666655333 3322 23456899999999864 5544322 57
Q ss_pred cEEEEECCCCceeeEEecc-------CCeeEEEEeCCCCEEEEEE----CCCeEEEEECCCCEEEEEecCCCCCEE-EEE
Q 009059 372 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 439 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~~~~----~dg~I~i~d~~~~~~~~~~~~h~~~I~-~l~ 439 (545)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999887777643 2358899998767766655 478999999998887776665432110 133
Q ss_pred EcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-eEEEEeCC---CCe-----
Q 009059 440 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 509 (545)
Q Consensus 440 ~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-~I~iwd~~---~~~----- 509 (545)
+.++|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 344666666555 66665553 2356799999999999988776 66666532 111
Q ss_pred ---EEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 510 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 510 ---~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999998888889999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-09 Score=109.74 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=168.0
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCeEEEEeccC-CccEEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 009059 274 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 331 (545)
Q Consensus 274 dg~~latg~~-dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~-s-p~~~~l~t~s------------------~dg~I~v 331 (545)
||++|+.... ++.|.+.|+.+++....+.-. ...+..+++ . |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877665 457999999999988855322 245788998 5 8999999885 2468999
Q ss_pred EECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-------------------------------------CcEE
Q 009059 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 374 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-------------------------------------g~I~ 374 (545)
+|.++.+. ...+.-- +....++++|+++.+++++... +.|.
T Consensus 180 ID~~t~~v-~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEV-AWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEE-EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeE-EEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99998765 3333311 1456778899988888766433 2477
Q ss_pred EEECCC--Cce-eeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCE------------EEEEecCCCCCEEEE
Q 009059 375 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 438 (545)
Q Consensus 375 lwd~~~--~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~------------~~~~~~~h~~~I~~l 438 (545)
+.|..+ ++. +..+.......++.++|+|+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 545 567777778889999999999888775 7899999999653 334443 34567899
Q ss_pred EEcCCCCEEEEEe--CCcEEEEEcCCC-------CCcceEEEEeeCCCceEE-----EEEcCCCCEEEEEEcCC--eE--
Q 009059 439 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFHS-----CVFHPTFPSLLVIGCYE--TL-- 500 (545)
Q Consensus 439 ~~sp~g~~l~s~s--dg~I~vwd~~~~-------~~~~~i~~~~~~~~~v~~-----~~~sp~~~~l~~~~~dg--~I-- 500 (545)
+|+++| ++.+.. |+.|.+||+... +....+..+..+..+-.. +.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 665555 999999999762 113567777766554321 24589999999887533 34
Q ss_pred ---------EEEeCCCCeEE
Q 009059 501 ---------ELWNMTENKTL 511 (545)
Q Consensus 501 ---------~iwd~~~~~~~ 511 (545)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-08 Score=91.51 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=143.5
Q ss_pred eEEEEeccCCc--cEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCeeeeEec-cCcccEEEEEEeCCCCcEEEEEcCC
Q 009059 296 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 296 ~~~~~l~~h~~--~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.+.++. |.. ....++|++++.++++.+. ++.|+++|+.+++. +..+. +.......+++. ++.++++.-.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 4455553 443 3689999998644444433 57999999999886 44433 222233455555 45777777788
Q ss_pred CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCC
Q 009059 371 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~ 445 (545)
+.+.++|..+.+.+..+... ......++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999999999988765 12234466688888888788999999999988777765321 246788888 676
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 508 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~ 508 (545)
+++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++ ..+.|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555554 779999999988 555555432 13568999999998777666 4568888887544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-07 Score=88.75 Aligned_cols=222 Identities=7% Similarity=0.010 Sum_probs=142.3
Q ss_pred CEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CC
Q 009059 318 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG 392 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~ 392 (545)
.+|+.+.. +.|+.+++...... ...+......+..++|++++..++++...++.|..+++........+... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888754321 11122123457899999987788878777889999999866543333322 46
Q ss_pred eeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcc
Q 009059 393 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 467 (545)
Q Consensus 393 v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~ 467 (545)
...++++++++.++++.. .+.|.++++..................++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998777777665 67999999875432222322235678999999766555554 3 4788888764321 1
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEEcC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 545 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~iWd 545 (545)
.+ ..........+++++++..|+++... +.|.++|+.+.....+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11223467899999988878777665 59999999876554333233445667654 45555554 456776653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.4e-11 Score=118.36 Aligned_cols=201 Identities=9% Similarity=-0.020 Sum_probs=109.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCC--e
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A 393 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~--v 393 (545)
++..+++++.||.|+.||..+++. +..+.. +.+.+..+..++ .++++++.||.|+.||..+++.+..+..... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999886 444543 445544455554 3555778899999999998887665542211 1
Q ss_pred e-EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 394 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 394 ~-~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
. ...+. .++.+++++.++.|+.||.++++.+..+..+. ...++|++..|++++ |+.|+.||.++++......
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 0 11111 34678888889999999999999888776543 234566777888777 8999999999885422221
Q ss_pred EeeCCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeE-EEEeCCCC
Q 009059 472 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 530 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~-l~~spd~~ 530 (545)
... .....+..+. ..+++++.++.|+.||..+++.+-......++.. ..+++++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 111 1122333332 4588899999999999999988732234445443 34455553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-08 Score=107.39 Aligned_cols=262 Identities=13% Similarity=0.098 Sum_probs=169.1
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc----------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~----------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.++.|.-+|..+|+.+..+...... + ..+++ .+..|++++.|+.|..+|..+++...+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777778899999999999999877533211 0 11222 3557888889999999999998863332
Q ss_pred eccCc---ccEE-EEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccC--C-------------------
Q 009059 344 FTGHS---TTVM-SLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQS--G------------------- 392 (545)
Q Consensus 344 ~~~h~---~~V~-~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~--~------------------- 392 (545)
-.... ..+. ...+. +..++ .+.. +|.|+.+|..+++.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVI-IGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEEE--CCEEE-EeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 22111 1111 11111 23444 4432 5899999999999998776311 0
Q ss_pred -----------eeEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCEEEEEecC--CC-------C
Q 009059 393 -----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------N 433 (545)
Q Consensus 393 -----------v~~l~~sp~~~~l~~~~~dg-------------------~I~i~d~~~~~~~~~~~~--h~-------~ 433 (545)
...+++.++.+.++++..++ .|..+|.++++.+..++. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 12468888888888887765 499999999999887764 22 2
Q ss_pred CEEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC------------Cc-------------------
Q 009059 434 QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK------------------- 478 (545)
Q Consensus 434 ~I~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~------------~~------------------- 478 (545)
++....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 333333334665 577777 8999999999884 332211110 00
Q ss_pred -----eEEEEEcCCCCEEEEEE------------------------------------cCCeEEEEeCCCCeEE-EeccC
Q 009059 479 -----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTL-TLSAH 516 (545)
Q Consensus 479 -----v~~~~~sp~~~~l~~~~------------------------------------~dg~I~iwd~~~~~~~-~~~~h 516 (545)
-..++++|+...+++.. .++.|+.||+.+++.+ ... +
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~ 456 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-Y 456 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-E
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-C
Confidence 01257777766665421 2378999999999988 333 3
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 517 DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 517 ~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
...+....+...+.+|++++.||.|+.||
T Consensus 457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCCcCceeEeCCCEEEEECCcccchhhh
Confidence 33344445556788999999999999886
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-06 Score=96.07 Aligned_cols=267 Identities=7% Similarity=0.092 Sum_probs=177.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+...|.++...+++.+.+ |+.++-|.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence 356799999888886555 44454589999887665443222 245699999988877544 4455 4888998
Q ss_pred CCCCeeeeEec--------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------ccCCeeEEEEe
Q 009059 335 ENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ 399 (545)
Q Consensus 335 ~~~~~~~~~~~--------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-------~~~~v~~l~~s 399 (545)
.+... ..+. -....|.++...++|. +. .|..++-|..|+..+........ ....|.++...
T Consensus 290 ~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 290 GTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 76543 2222 1235799999888764 33 56666779999876544322111 12347888888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEecC--------CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--------h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~ 470 (545)
++ +.|.+|+.++.|..||..++........ ....|.+++..++|.+|..|. ++-|.+||..++. +.
T Consensus 366 ~~-g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~ 440 (795)
T 4a2l_A 366 KD-KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VE 440 (795)
T ss_dssp TT-SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EE
T ss_pred CC-CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EE
Confidence 77 5577888888899999987754432211 235799999999999444455 6789999987752 22
Q ss_pred EEe-----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc-------CCCCeeEEEEeCCCCEEEEEeCC
Q 009059 471 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD 538 (545)
Q Consensus 471 ~~~-----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spd~~~las~s~D 538 (545)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...+++.+.+... +
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 222 1345789999988887 555665 569999998887664432 236789999998888666554 5
Q ss_pred CcEEEc
Q 009059 539 KCVKIW 544 (545)
Q Consensus 539 g~I~iW 544 (545)
| |..|
T Consensus 518 G-l~~~ 522 (795)
T 4a2l_A 518 G-LSVF 522 (795)
T ss_dssp C-EEEE
T ss_pred c-eEEE
Confidence 5 4444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-06 Score=94.61 Aligned_cols=265 Identities=7% Similarity=0.051 Sum_probs=179.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.++...++|.+.+ |+.+ -|.+|+..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999999887554 4444 589999887765543221 235799999988876 5567777778999876
Q ss_pred CCCeeeeEecc-------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---------ccCCeeEEEEe
Q 009059 336 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ 399 (545)
Q Consensus 336 ~~~~~~~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---------~~~~v~~l~~s 399 (545)
.... ..+.. ....|.++...+++. +. .|..++-|..||..++....... ....|.++...
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5432 22211 235699998887764 43 56667779999988766543221 12457888888
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe--
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-- 473 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~----~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-- 473 (545)
+++..|.+++.++.|.+||..+++...... .....|.++...++|.+.++.. +-|.+||..++ . ...+.
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~-~~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---S-FTTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---E-EEECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---e-EEEcccc
Confidence 886548888888889999998876544322 1345799999999998777665 55888998764 2 22221
Q ss_pred -----eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec-------cCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 474 -----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 474 -----~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-------~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.....|.++...+++. |.+++. +.|..||..+++. .+. .....|.++...++|.+.++.. .| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-c
Confidence 1236789999999888 555555 6699999887766 332 1335789999988888665543 35 4
Q ss_pred EEc
Q 009059 542 KIW 544 (545)
Q Consensus 542 ~iW 544 (545)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-07 Score=101.25 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=164.6
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeEEEEeccCCc-c---------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 275 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-W---------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 275 g~~latg~~-dg~I~lwd~-~~~~~~~~l~~h~~-~---------V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+..|++++. ++.|.-+|. .+++.+..+..... . + ..+++ .+..+++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 789999999 89998877643221 0 0 11223 35678888899999999999988633
Q ss_pred eEec-cCcc--cEE-EEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCe------------------
Q 009059 342 RTFT-GHST--TVM-SLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGA------------------ 393 (545)
Q Consensus 342 ~~~~-~h~~--~V~-~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v------------------ 393 (545)
+.-. .+.. .+. ..... +..++ .+.. ++.|+.+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~-vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EecCCCCCccceeccCCEEE--CCEEE-EEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 3221 1110 111 11112 23444 4443 789999999999998877643321
Q ss_pred ---------------------eEEEEeCCCCEEEEEECC----------------CeEEEEECCCCEEEEEecC--CC--
Q 009059 394 ---------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK-- 432 (545)
Q Consensus 394 ---------------------~~l~~sp~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~--h~-- 432 (545)
..+++.++.+.++++..+ +.|..+|.++++.+..++. |.
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 235677777788777642 3599999999998887753 21
Q ss_pred ------CCEEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-------------Cce----------
Q 009059 433 ------NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF---------- 479 (545)
Q Consensus 433 ------~~I~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-------------~~v---------- 479 (545)
.++. +....+|+ +++.++ +|.++++|..+++ .+....... .++
T Consensus 297 d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~ 372 (571)
T 2ad6_A 297 DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMD 372 (571)
T ss_dssp CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTT
T ss_pred ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCC
Confidence 2221 22224674 566666 8899999998884 333332111 111
Q ss_pred ----------------EEEEEcCCCCEEEEEEc-------------------------------------CCeEEEEeCC
Q 009059 480 ----------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMT 506 (545)
Q Consensus 480 ----------------~~~~~sp~~~~l~~~~~-------------------------------------dg~I~iwd~~ 506 (545)
..++++|+...+++... ++.|+.||+.
T Consensus 373 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~ 452 (571)
T 2ad6_A 373 HKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLT 452 (571)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTT
T ss_pred CCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECC
Confidence 23577888777776542 4689999999
Q ss_pred CCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 507 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 507 ~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++.+ ... +...+....+...+.+|+.++.||.|+.||
T Consensus 453 tG~~~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 453 TGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp TCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCCEEEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 99887 332 333333333344567788899999999875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-07 Score=87.09 Aligned_cols=202 Identities=7% Similarity=0.038 Sum_probs=139.4
Q ss_pred eEEEEeecCCCC--CeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCeEEEEeccCC-ccEEEEEEcCCCCEEEEE-eCC
Q 009059 253 FTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SAD 326 (545)
Q Consensus 253 ~~~~~~l~~H~~--~V~~l~~spdg~~latg~~--dg~I~lwd~~~~~~~~~l~~h~-~~V~~l~~sp~~~~l~t~-s~d 326 (545)
++.+..+. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+.+ -.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34455553 443 3679999998755555543 5799999999999998764222 223345554 4455544 457
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC------CeeEEEEeC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQP 400 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~------~v~~l~~sp 400 (545)
+.+.++|..+.+. +..+......- ..+.++++.++++- .++.|.++|..+.+.+..+.... .+..+.|.
T Consensus 86 ~~v~viD~~t~~v-~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSN-IKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTTTEE-EEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCCCcE-EEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 8999999998765 55554221222 33455777888655 58899999999998888776432 36678888
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCEEEEEecCC-------------CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC
Q 009059 401 RLGRILAAA-IENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 401 ~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h-------------~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~ 463 (545)
+ +.+++.. .++.|.+.|..+++.+..+... ....+.|+|+|+++.|++++ .+.|.+.++...
T Consensus 161 d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 5 4666666 4789999999999988877531 13678999999987666655 668888887543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-07 Score=88.18 Aligned_cols=234 Identities=10% Similarity=0.020 Sum_probs=145.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-------------------cCCccEEEEEEcCCCCEEEEEeC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHTQWITDVRFSPSLSRLATSSA 325 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-------------------~h~~~V~~l~~sp~~~~l~t~s~ 325 (545)
...+++|.+++++++++..++.|..|+..+++...... .....+..+++.++...|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 45678999999978888889999999987654432110 01135789999973344555555
Q ss_pred CCeEEEEECCCCCeeeeEecc-----CcccEEEEEEeC-CCCcEEEEEcC-----------------CCcEEEEECCCCc
Q 009059 326 DRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNGS 382 (545)
Q Consensus 326 dg~I~vwd~~~~~~~~~~~~~-----h~~~V~~l~~~p-~~~~ll~s~s~-----------------dg~I~lwd~~~~~ 382 (545)
.+.|..+|..++. +..+.. .......+++.+ ++. ++++... ++.|..||..+++
T Consensus 100 ~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 100 YYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5568888876543 222211 113478899999 874 4434322 3678999988776
Q ss_pred eeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEeC------
Q 009059 383 CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD------ 452 (545)
Q Consensus 383 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~s~sd------ 452 (545)
.............++++++++.++++.. .+.|.+|++... ... .+....+ ...++++++|+++++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5443333345678999999887777654 689999998742 211 1111223 788999999987776543
Q ss_pred -----CcEEEEEcCCCCCcceEEEEeeCC----CceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCe
Q 009059 453 -----ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 453 -----g~I~vwd~~~~~~~~~i~~~~~~~----~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~ 509 (545)
+.|.++|.. + ..+..+.... ..+..+++ .++. |++++ ..+.|.++++....
T Consensus 255 ~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC----
T ss_pred cCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEeccccc
Confidence 457777753 3 4444444332 34566666 3444 55544 55688888876443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-07 Score=88.45 Aligned_cols=232 Identities=9% Similarity=0.003 Sum_probs=143.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec------------------cCcccEEEEEEeCCCCcEEEEEc
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------------------GHSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~------------------~h~~~V~~l~~~p~~~~ll~s~s 368 (545)
...+++|.+++++++++..++.|..|+...+........ .....+..+++.+++..++ .+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 356688999998888888899999999876543211110 0113578999997334555 343
Q ss_pred CCCcEEEEECCCCceeeEEec-----cCCeeEEEEeC-CCCEEEEEEC-----------------CCeEEEEECCCCEEE
Q 009059 369 NNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQVCR 425 (545)
Q Consensus 369 ~dg~I~lwd~~~~~~~~~~~~-----~~~v~~l~~sp-~~~~l~~~~~-----------------dg~I~i~d~~~~~~~ 425 (545)
..+.|..+|..++........ ......+++.+ ++..+++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 345588898775543221111 12467899999 7654444322 367999998877644
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-------
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------- 496 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~------- 496 (545)
..... ......|+|++++++|+.+. .+.|.+|++....... ...+..... ...+++.++|+++++...
T Consensus 179 ~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred EeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence 32221 23456799999999776664 6799999987532211 111111223 788999999985555444
Q ss_pred ---CCeEEEEeCCCCeEE-EeccC----CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 497 ---YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 497 ---dg~I~iwd~~~~~~~-~~~~h----~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.+.|..+|.. ++.+ .+... -..++.+++ .++.++++...++.|.++
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEE
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEE
Confidence 3578888875 4444 33322 245777776 355555555566777665
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-07 Score=87.56 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=134.3
Q ss_pred eEEEEeccCCc--cEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 296 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 296 ~~~~~l~~h~~--~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
+.+.++ .|.. ....|.|+ ++.++.+.+.+| .|+++|+.+++. +..+.-. .........++++.++...-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 344555 3443 35788998 666666666665 899999999886 4444322 23333222333567777777799
Q ss_pred cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCC--C---CCEEEEEEcCCCCE
Q 009059 372 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEY 446 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~---~~I~~l~~sp~g~~ 446 (545)
.+.+||..+.+.+..+.....- ..+.++++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875533 344456778888777889999999998887776542 1 345667886 6766
Q ss_pred EEEEe-CCcEEEEEcCCCCCcceEEEEeeC------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 447 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 447 l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65555 779999999988 555555432 2356899999998888887764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-07 Score=96.03 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=164.2
Q ss_pred CCEEEEEeC-CCcEEEEEc-CCCeEEEEeccCCcc-----------EEEEEEcCCCCE----EEEEeCCCeEEEEECCCC
Q 009059 275 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 337 (545)
Q Consensus 275 g~~latg~~-dg~I~lwd~-~~~~~~~~l~~h~~~-----------V~~l~~sp~~~~----l~t~s~dg~I~vwd~~~~ 337 (545)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |+.++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666676 889999999 899998776532210 123455443334 888889999999999998
Q ss_pred CeeeeEeccC-c--ccEE-EEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCe--------------
Q 009059 338 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGA-------------- 393 (545)
Q Consensus 338 ~~~~~~~~~h-~--~~V~-~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v-------------- 393 (545)
+...+.-... . ..+. ...+. + ..++ .+. .+|.|+.+|.++++.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~-vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVI-IGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEE-ECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEE-EEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 8643322211 0 0111 11122 2 3444 443 3799999999999998877654322
Q ss_pred -------------------------eEEEEeCCCCEEEEEECC----------------CeEEEEECCCCEEEEEecCCC
Q 009059 394 -------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHK 432 (545)
Q Consensus 394 -------------------------~~l~~sp~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h~ 432 (545)
..+++.+..+.++++..+ +.|..+|.++++.+..++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 135677788888888765 389999999999988776421
Q ss_pred ----------CCEEEEEEc-CCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCce-----
Q 009059 433 ----------NQVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF----- 479 (545)
Q Consensus 433 ----------~~I~~l~~s-p~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v----- 479 (545)
.++. +... .+| ..++.++ +|.++++|..+++ .+...... ..++
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~ 374 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEY 374 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeecccc
Confidence 1222 2222 467 4666676 8899999998884 33332211 0111
Q ss_pred ---------------------EEEEEcCCCCEEEEEE---------------------------------------cCCe
Q 009059 480 ---------------------HSCVFHPTFPSLLVIG---------------------------------------CYET 499 (545)
Q Consensus 480 ---------------------~~~~~sp~~~~l~~~~---------------------------------------~dg~ 499 (545)
..++++|+...+++.. ..+.
T Consensus 375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~ 454 (599)
T 1w6s_A 375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ 454 (599)
T ss_dssp CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence 2345666665554431 2468
Q ss_pred EEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 500 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 500 I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
|..||+.+++.+ ... +..++..-.+...+.+|+.++.||.|+.||
T Consensus 455 l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 455 IKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999999887 332 222222212233567888899999998875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-06 Score=83.74 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=144.4
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc-CCC-c
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 372 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg-~ 372 (545)
.+.+..+... .....++|+++++++++-..++.|..||.... . ...+. ....+..+++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 3444455432 45788999999987777667899999998753 2 22222 345688999999986 443432 232 4
Q ss_pred EEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE-EEEec---------CCCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 439 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~-~~~~~---------~h~~~I~~l~ 439 (545)
|..+|..+++........ .....++..+. +.+++.. .++.|+++|..++.. +.... ..-...+.|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777787777765443322 12344555444 5555555 488999999886532 21111 111245566
Q ss_pred EcCCCCEEEEEe--CCcEEEEEcCC-CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE---e
Q 009059 440 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 513 (545)
Q Consensus 440 ~sp~g~~l~s~s--dg~I~vwd~~~-~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~---~ 513 (545)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|+.+++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 66999999875 221 11111111 1345678999999865555556799999986 55432 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEeCC
Q 009059 514 SAHDKLVSSLAAS---TVNGMVASASHD 538 (545)
Q Consensus 514 ~~h~~~V~~l~~s---pd~~~las~s~D 538 (545)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2223568999998 888877666543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-07 Score=85.25 Aligned_cols=196 Identities=14% Similarity=0.170 Sum_probs=133.3
Q ss_pred eEEEEeecCCCCC--eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEEEEeccCCcc-EEEEEEcCCCCEEEEEe-CC
Q 009059 253 FTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-AD 326 (545)
Q Consensus 253 ~~~~~~l~~H~~~--V~~l~~spdg~~latg~~dg--~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp~~~~l~t~s-~d 326 (545)
++.++.+ .|... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.-.... -..+++ ++..|+... .+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence 4445555 44443 3788998 677777777665 8999999999999887543322 123444 344555554 58
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc------CCeeEEEEeC
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMRFQP 400 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------~~v~~l~~sp 400 (545)
+.+.+||..+.+. +.++... ..-+.++ +++..++++- .++.|.++|..+.+.+..+... ..++.+.|.
T Consensus 107 ~~v~v~D~~t~~~-~~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQ-VRSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCE-EEEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcE-EEEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998775 5555532 2223444 5566777554 4778999999999988887653 234567776
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCEEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCCcEEEEE
Q 009059 401 RLGRILAAA-IENYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWS 459 (545)
Q Consensus 401 ~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h------------~~~I~~l~~sp~g~~l~s~sdg~I~vwd 459 (545)
+ +.+++.. .++.|.+.|.++++.+..+... ..-.+.|+|+|+++.|++.+..-=++|.
T Consensus 181 ~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 181 D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 4 4666666 4789999999999988876532 2356899999998877777644333333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-06 Score=92.58 Aligned_cols=274 Identities=8% Similarity=-0.047 Sum_probs=176.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec--------------cCCccEEEEEEcCCCCEEEEEeCCCe
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 328 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~--------------~h~~~V~~l~~sp~~~~l~t~s~dg~ 328 (545)
...|.++...++|.+ ..|+..+-|.+++..+.+...... -....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 457999999888864 456665678889987655332111 1345799999988775 666776777
Q ss_pred EEEEECCCCCeeeeEec--------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEE
Q 009059 329 VRVWDTENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 396 (545)
Q Consensus 329 I~vwd~~~~~~~~~~~~--------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l 396 (545)
|..|+............ .....|.++...+++. +. .|..++-|..||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 88998876543111110 1235689998887754 33 55556669999987654332111 12347788
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-
Q 009059 397 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 473 (545)
Q Consensus 397 ~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~- 473 (545)
...++ +.|.+++.++.|..||..+++...... .....|.++...++|.+.+... +-|.+||..++.. .......
T Consensus 413 ~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSE-GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTT-SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCC-CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 77766 557778887889999998876543221 1346899999988887666554 6688999876532 1111111
Q ss_pred --eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc----CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 474 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 474 --~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~----h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.....|.++...+++. |.+++.++.|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136789999998887 6667765668889988877665432 23568899988888866554 467646554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-07 Score=85.50 Aligned_cols=179 Identities=9% Similarity=0.055 Sum_probs=129.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEE--EEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM--SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~--~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
....|.|+ ++.++++.+.+|.|+++|+.+++. +..+.. .... .+++ .++.++...-.++.+.+||..+.+.+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv-~~~~l~--~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP-VWMERL--GNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC-SEEEEC--TTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE-EeEECC--CCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 35788887 456667777888999999999886 444322 2333 3444 45677777778999999999999999
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCCEEEEEe-CCcEEEE
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLASVS-DELVRVW 458 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~~l~s~s-dg~I~vw 458 (545)
..+.....-..++ ++++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +|++++... ++.|.+.
T Consensus 130 ~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 9998755444444 567888888889999999999998887765421 255778887 776665555 7799999
Q ss_pred EcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 459 SIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 459 d~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
|..++ +.+..+... ....+.++++|+++.|++.+..
T Consensus 207 Dp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 207 DPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred eCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 99988 555554422 2356899999988777776653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-06 Score=80.50 Aligned_cols=227 Identities=9% Similarity=0.018 Sum_probs=140.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C-eEEEEECCCCCeee
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVRVWDTENPDYSL 341 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g-~I~vwd~~~~~~~~ 341 (545)
.....++|+++++++++-..++.|..||.... ....+. ....+..+++.++++++++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45778999999997777767899999997753 333332 23568899999999866655433 2 46667776665321
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce-eeEEe----------ccCCeeEEEEeCCCCEEEEEEC
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK----------CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~-~~~~~----------~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..-.........++..+. ..++++...++.|+++|...+.. +.... .-.....+ +++++.++++..
T Consensus 110 ~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 111112223345554444 45555555688999999876431 11000 00124445 788777777765
Q ss_pred -CCeEEEEECCC-CEE--EEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc
Q 009059 411 -ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 485 (545)
Q Consensus 411 -dg~I~i~d~~~-~~~--~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s 485 (545)
.+.|.+||+.. +.. ...+.. ......++++++|+++++.. .+.|.++|.. +.. ..+..+........+++|.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTCTTEEEEEEC
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeecccccCCceEEEEe
Confidence 67999999874 321 111111 13456789999998766665 6799999864 311 1122233333568999998
Q ss_pred ---CCCCEEEEEEcCC
Q 009059 486 ---PTFPSLLVIGCYE 498 (545)
Q Consensus 486 ---p~~~~l~~~~~dg 498 (545)
+++..|+++...+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 8888888877654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.5e-06 Score=81.13 Aligned_cols=238 Identities=9% Similarity=0.008 Sum_probs=153.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~ 341 (545)
.+..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|.+....|+.+ ...+.|..+++..... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3445666666644 555443 45688888876555444443 3457899999766655554 4578899999886543 2
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC-C-CeEEEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-E-NYISILD 418 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~-d-g~I~i~d 418 (545)
..+.........+++.+.+..++++-...+.|.+.++........+. .......++++|.++.++.+.. . +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 22222234567899998777888777778899999987554333332 2245789999998787777765 3 7899998
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG- 495 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~- 495 (545)
+........+...-...+.|+++|++..|+.+. .+.|..+|+..... ...+.........+++. .+ .|+.+.
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~~-~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-ED-SLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-CC-EEEEecC
Confidence 875433322222345679999998877777666 56899999865321 12222234456777773 33 455554
Q ss_pred cCCeEEEEeCCCCe
Q 009059 496 CYETLELWNMTENK 509 (545)
Q Consensus 496 ~dg~I~iwd~~~~~ 509 (545)
..+.|..++..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 45588888855544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-07 Score=97.01 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=157.0
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc-cEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCeeeeEec
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~-~V~~l~~sp--~~~~l~t~s~------dg~I~vwd~~~~~~~~~~~~ 345 (545)
+..|++++.|+.|..+|.++|+.+..+..... ....+...| .+..++++.. +|.|..+|..+++...+...
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 45788888899999999999999877654210 000011111 1334555432 58999999999886333221
Q ss_pred c--Cc----------------------------ccEEEEEEeCCCCcEEEEEcCCC-------------------cEEEE
Q 009059 346 G--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIRYW 376 (545)
Q Consensus 346 ~--h~----------------------------~~V~~l~~~p~~~~ll~s~s~dg-------------------~I~lw 376 (545)
. .. .....+++.|+.. +++.+..++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 0 00 0112467777755 455665555 49999
Q ss_pred ECCCCceeeEEecc----------CCeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCCC----------
Q 009059 377 SINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN---------- 433 (545)
Q Consensus 377 d~~~~~~~~~~~~~----------~~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---------- 433 (545)
|..+++.+..+... .......+..++. .+++++.+|.++++|.++++.+........
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 99999999888743 1222233334544 577888899999999999988754332110
Q ss_pred --CE------------------------EEEEEcCCCCEEEEE------------------------------------e
Q 009059 434 --QV------------------------HSVCWNTSGEYLASV------------------------------------S 451 (545)
Q Consensus 434 --~I------------------------~~l~~sp~g~~l~s~------------------------------------s 451 (545)
++ ..++++|+..++++. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00 125677776665541 1
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCe-eEEEEeCC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTV 528 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V-~~l~~spd 528 (545)
++.|..||+.++ +.+-..... .......+...+..+++++.++.|++||.++++.+ .+....... .-+.+..+
T Consensus 436 ~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~ 511 (668)
T 1kv9_A 436 VSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELA 511 (668)
T ss_dssp CEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred ccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEEC
Confidence 367999999888 444444332 22333344556778899999999999999999988 443322111 22344456
Q ss_pred CC-EEEEEe
Q 009059 529 NG-MVASAS 536 (545)
Q Consensus 529 ~~-~las~s 536 (545)
|+ +++.++
T Consensus 512 G~~yva~~~ 520 (668)
T 1kv9_A 512 GRQYVAIMA 520 (668)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 66 555444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.7e-05 Score=76.24 Aligned_cols=229 Identities=8% Similarity=-0.045 Sum_probs=146.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC---CeeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~---~~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..|+.+.+....+. ....+..++|.+.+..|+.+ ...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 444444 3578999988776555544 34567899999866555554 45689999998751 221222322224567
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECC--CeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~ 429 (545)
.+++.+.+..++++-...+.|.++++........+. .......+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899987767787777778899999987554433333 23467899999988888777653 689999886543322223
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 506 (545)
..-.....|++++++..|+.+. .+.|..+|+... ....+............+++. .+ .|+.+. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-ED-KVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TT-EEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CC-EEEEEECCCCeEEEEeCC
Confidence 3345788999999887777666 569999998743 222222211123445677775 33 455554 45589999876
Q ss_pred CCeE
Q 009059 507 ENKT 510 (545)
Q Consensus 507 ~~~~ 510 (545)
+++.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-06 Score=79.14 Aligned_cols=186 Identities=10% Similarity=0.097 Sum_probs=128.0
Q ss_pred eeEeccCc--ccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEE
Q 009059 341 LRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 415 (545)
Q Consensus 341 ~~~~~~h~--~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~ 415 (545)
+..+ .|. .....+.|++ ..++.+.+.+| .|+.+|+.+++.+..+..........+...++.++.... ++.+.
T Consensus 12 ~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 3444 454 3466899986 46776777654 899999999999999887776655444445567776664 88999
Q ss_pred EEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC--C---CceEEEEEcCCCC
Q 009059 416 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFP 489 (545)
Q Consensus 416 i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~--~---~~v~~~~~sp~~~ 489 (545)
+||..+.+.+.++.... .-..++ +++..|+.+. ++.|.++|..+. ..+..+... . ..++.+.+. +++
T Consensus 89 v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999998887533 224555 4566555555 779999999887 444444332 1 234556665 555
Q ss_pred EEEEEE-cCCeEEEEeCCCCeEE-Eec--c-----------CCCCeeEEEEeCCCCEEEEEeC
Q 009059 490 SLLVIG-CYETLELWNMTENKTL-TLS--A-----------HDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 490 ~l~~~~-~dg~I~iwd~~~~~~~-~~~--~-----------h~~~V~~l~~spd~~~las~s~ 537 (545)
|++.. ..+.|.+.|..+++++ .+. + -....+.|+++|+++.|...+.
T Consensus 162 -lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 -LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55554 5679999999999988 222 1 1235789999998876665553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.5e-07 Score=83.51 Aligned_cols=176 Identities=8% Similarity=0.031 Sum_probs=123.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEe
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL 428 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~ 428 (545)
....+.|+ ++.|+.+.+.+|.|+++|+.+++.+..+ .........+.+.++.|+... .++.+.+||..+.+.+.++
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34788887 3578888888999999999999999888 666654433444556666655 4889999999999999888
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee--CC---CceEEEEEcCCCCEEEEEE-cCCeEE
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLE 501 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~--~~---~~v~~~~~sp~~~~l~~~~-~dg~I~ 501 (545)
... ..-..++ ++++.|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. ..+.|.
T Consensus 133 ~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEE
Confidence 753 2224454 4677777776 789999999887 44444432 22 234566776 665 55555 467999
Q ss_pred EEeCCCCeEE-Eecc-------------CCCCeeEEEEeCCCCEEEEEe
Q 009059 502 LWNMTENKTL-TLSA-------------HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 502 iwd~~~~~~~-~~~~-------------h~~~V~~l~~spd~~~las~s 536 (545)
+.|..+++++ .+.. -....+.|+++|+++.|...+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999987 2221 124678999999876554444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=79.61 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=133.6
Q ss_pred eEEEEeccCC--ccEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCCeeeeEeccCcc-cEEEEEEeCCCCcEEEEEcCC
Q 009059 296 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 370 (545)
Q Consensus 296 ~~~~~l~~h~--~~V~~l~~sp~~~~l~t~s~d--g~I~vwd~~~~~~~~~~~~~h~~-~V~~l~~~p~~~~ll~s~s~d 370 (545)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-... .-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 444555 344 4467899986 4555555554 4899999999886 444432221 12334444 46777777789
Q ss_pred CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCC-----CCEEEEEEcCCCC
Q 009059 371 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 445 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-----~~I~~l~~sp~g~ 445 (545)
+.+.+||..+.+.+.++.....-..+ .++++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999999876544444 4567888888889999999999988877765422 356677776 676
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeC-------------CCceEEEEEcCCCCEEEEEEcC
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+++... ++.|.+.|..++ +.+..+... ....+.++++|++..|++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 665554 779999999988 555555422 2356889999988877777754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-07 Score=103.71 Aligned_cols=265 Identities=9% Similarity=0.037 Sum_probs=151.4
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCCeEE--EEec-cCCccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 009059 268 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 331 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg-----------~I~lwd~~~~~~~--~~l~-~h~~~V~~l~~sp~~~~l~t~s~-dg~I~v 331 (545)
++++.+ ++++++.|+.+. .+.+||..+++-. ..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 899999987643 5889998876532 2221 23333445778889999999984 458999
Q ss_pred EECCCCCeeeeEeccCc-ccEEEEEEeCCCCcEEEEEc-CC-----CcEEEEECCCCceeeEE-----eccCCeeEEEEe
Q 009059 332 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQ 399 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~~ll~s~s-~d-----g~I~lwd~~~~~~~~~~-----~~~~~v~~l~~s 399 (545)
||..+...... -..+. ..-.++++.+++. +++.|+ .+ ..+.+||..+.+....- .....-....+.
T Consensus 270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 99987654211 11111 1123445556665 555665 34 46999999876643320 000000001122
Q ss_pred CCCCEEEEEECC---------CeEEEEECCCCEEEEEecCCC---------CCEEEEEEc-CCCCEEEEEe-CC------
Q 009059 400 PRLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWN-TSGEYLASVS-DE------ 453 (545)
Q Consensus 400 p~~~~l~~~~~d---------g~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~s-p~g~~l~s~s-dg------ 453 (545)
.++..++.++.+ ..+..||..+.........+. ..-.++.|. .++++++.|+ ++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 333444555443 457888988765433222111 123445554 3677777776 32
Q ss_pred -----cEEEEEcCCCCCcceEEEE--eeCC-CceEEEEEcCCCCEEEEEEcC-----------CeEEEEeCCCCeEEEec
Q 009059 454 -----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLS 514 (545)
Q Consensus 454 -----~I~vwd~~~~~~~~~i~~~--~~~~-~~v~~~~~sp~~~~l~~~~~d-----------g~I~iwd~~~~~~~~~~ 514 (545)
.|.+||..+.. ..... .... ....+++..|+++.+++|+.+ ..+.+||..+++...+.
T Consensus 428 ~~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CCCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 57777776542 21111 1112 223455677899988888854 46899999887765433
Q ss_pred c---CCCCeeEEEEeCCCCEEEEEeC
Q 009059 515 A---HDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 515 ~---h~~~V~~l~~spd~~~las~s~ 537 (545)
. ......+..+.+++++++.||.
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCccccccHhhcCCCcEEEecCCC
Confidence 1 1122234456789999999985
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-06 Score=82.39 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=152.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEe
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~ 344 (545)
-.|.+..+++ +|+.+. ...|+.+++........+.. ...+..++|.+.+..|+.+ ...+.|..+++..... ...+
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 4455655533 555443 46788888877655544443 3457899999765555544 4578899999886542 2223
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC-C-CeEEEEECCC
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI-E-NYISILDVET 421 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~-d-g~I~i~d~~~ 421 (545)
.........+++.+.+..++++-...+.|.+.++........+.. ......+++.|.++.|+.+.. . +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678889887778887777788899999875443333322 245789999998888877765 3 6899999876
Q ss_pred CEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCC
Q 009059 422 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 498 (545)
Q Consensus 422 ~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg 498 (545)
..........-...+.|+|+|++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333345679999998877777666 5689999986532 122222234456777773 33 455444 455
Q ss_pred eEEEEeCCCCeEE
Q 009059 499 TLELWNMTENKTL 511 (545)
Q Consensus 499 ~I~iwd~~~~~~~ 511 (545)
.|..+|..+++..
T Consensus 310 ~V~~~~~~~G~~~ 322 (386)
T 3v65_B 310 SINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEECCCCcce
Confidence 8888886555433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.2e-06 Score=88.50 Aligned_cols=263 Identities=10% Similarity=0.032 Sum_probs=159.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCCccE---------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V---------~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
..|++++.++.|.-+|..+|+.+..+....... ..+++ .+..++.++.|+.|..+|..+++...+.-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355555554459999999999987765432110 11222 3557888889999999999998864332211
Q ss_pred C-cc--cEE-EEEEeC---CCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCC---------------------
Q 009059 347 H-ST--TVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 392 (545)
Q Consensus 347 h-~~--~V~-~l~~~p---~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~--------------------- 392 (545)
. .. .+. ...+.. ++..+++.+. .++.|+.+|..+++.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 10 111 111111 1222444554 378999999999998876643210
Q ss_pred ---------------------eeEEEEeCCCCEEEEEEC--------------------C----CeEEEEECCCCEEEEE
Q 009059 393 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 427 (545)
Q Consensus 393 ---------------------v~~l~~sp~~~~l~~~~~--------------------d----g~I~i~d~~~~~~~~~ 427 (545)
-..+++.+..+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013567777788887773 2 5899999999999887
Q ss_pred ecC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC-------------Cc-
Q 009059 428 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 478 (545)
Q Consensus 428 ~~~--h~--------~~I~~l~~s-p~g~---~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~-------------~~- 478 (545)
++. |. .++. +... .+|+ +|+.++ +|.++++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1222 2222 4674 677777 8999999998884 333322211 00
Q ss_pred -------------------------------eEEEEEcCCCCEEEEEE--------------------------------
Q 009059 479 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 495 (545)
Q Consensus 479 -------------------------------v~~~~~sp~~~~l~~~~-------------------------------- 495 (545)
-..++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01345666655555543
Q ss_pred -cCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 496 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 496 -~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.++.|..||+.+++.+ .... ..++..-.+...+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecC-CCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2568999999999987 3332 22232222233467888899999999875
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-05 Score=87.89 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc-------CCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~-------h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
...|.++...++|.+.+ |+.++-|..||..+++....... ....|.++...+++.+.+ |+.+ -+.+||..
T Consensus 162 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~ 238 (781)
T 3v9f_A 162 SEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN 238 (781)
T ss_dssp CCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred ccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence 35688988888876554 66665689999887655432111 135699998888776554 4455 58899987
Q ss_pred CCCeeeeEec------cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---------------ccCCee
Q 009059 336 NPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGAT 394 (545)
Q Consensus 336 ~~~~~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---------------~~~~v~ 394 (545)
+......... .....|.++...+++. +. .|...+-|.++|..+........ ....|.
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 239 TETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTEEEC-----------CCCCEEEEEECTTSE-EE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCcEEEEEcCCCccccccCceEEEEEECCCCC-EE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 6543111111 1235689998877753 33 45554568999988765432211 123578
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 465 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~---------~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~ 465 (545)
++....+ +.|.+|+.++.|..|+..+........ .....|.+++..++|.+.+...++-|.+||..+...
T Consensus 317 ~i~~D~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 317 YIFQDSF-NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp EEEECSS-CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred EEEEeCC-CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence 8888887 457788888889999987654322110 023579999999888877655466788999764311
Q ss_pred cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 466 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 466 ~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.............|.++...+++. |.+|+.++.|..||..+++...+.. ....|.++...+++.+.+ |+..| |.
T Consensus 396 ~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~G-l~ 472 (781)
T 3v9f_A 396 IYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAG-VF 472 (781)
T ss_dssp ECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTE-EE
T ss_pred EEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCc-eE
Confidence 000000122346789999888877 6677777789999998887664432 346789998888776554 44455 44
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
+|
T Consensus 473 ~~ 474 (781)
T 3v9f_A 473 VI 474 (781)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-06 Score=92.07 Aligned_cols=252 Identities=9% Similarity=-0.002 Sum_probs=151.5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCC--c--cEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--Q--WITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~--~--~V~~-l~~sp~~~~l~t~s~------dg~I~vwd~~~~~~~~~~ 343 (545)
+..|++++.|+.|..+|..+++.+....... . .+.+ .... ++ .+++++. ++.|..+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5577888889999999999999987654221 0 1111 1111 33 5555554 789999999998863322
Q ss_pred eccCcc------------------------------------cE-EEEEEeCCCCcEEEEEcCC----------------
Q 009059 344 FTGHST------------------------------------TV-MSLDFHPSKEDLLCSCDNN---------------- 370 (545)
Q Consensus 344 ~~~h~~------------------------------------~V-~~l~~~p~~~~ll~s~s~d---------------- 370 (545)
...... .+ ..+++.+....++ .+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy-~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEE-EECCCCccccCCccCCCceeE
Confidence 211100 00 1345666644444 44321
Q ss_pred CcEEEEECCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCC-----
Q 009059 371 SEIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK----- 432 (545)
Q Consensus 371 g~I~lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----- 432 (545)
+.|..+|..+++.+..+.... ...-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 359999999999988876431 111122224553 45667789999999999998887654221
Q ss_pred --------CCE--------------------------EEEEEcCCCCEEEEEe---------------------------
Q 009059 433 --------NQV--------------------------HSVCWNTSGEYLASVS--------------------------- 451 (545)
Q Consensus 433 --------~~I--------------------------~~l~~sp~g~~l~s~s--------------------------- 451 (545)
.++ ..++++|+..+|++..
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 111 2356778777666643
Q ss_pred -----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-C
Q 009059 452 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 518 (545)
Q Consensus 452 -----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~ 518 (545)
++.|..||+.++ +.+-.+... ..+....+...+..+++++.++.|+.||.++++.+ .+.... .
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 357888888877 334443322 22222223334566888899999999999999988 443221 1
Q ss_pred CeeEEEEeCCCCEEE
Q 009059 519 LVSSLAASTVNGMVA 533 (545)
Q Consensus 519 ~V~~l~~spd~~~la 533 (545)
.-..+.+..+++.++
T Consensus 508 ~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYI 522 (571)
T ss_dssp CSCCEEEEETTEEEE
T ss_pred EeeeEEEEECCEEEE
Confidence 112234556776444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-05 Score=74.72 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=150.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe----ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l----~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
...+.+|.|.+++..+|+ +..+.| +...+.++.-..+ ......+.+|.|.+ +..+ .++.++.|.. ..++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE--ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE--ECCCC
Confidence 447999999888877775 456755 3333444322222 12345789999976 4444 4455664433 33222
Q ss_pred eeeeEec---cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 339 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 339 ~~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
....... .+...+..+.+.+++ .+++.+. +|.|+. ....++.-.... ....+..+.+.+++..+ +.+.+|.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~~g~~G~ 184 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYV-AVSSRGS 184 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEE-EEETTSS
T ss_pred CCceECccccCCCCCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEE-EEECCCc
Confidence 2222222 233557788877654 4554554 554432 222233222222 23457889999885544 5555565
Q ss_pred EEEE-EC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEee----CCCceEEEEEcC
Q 009059 414 ISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHP 486 (545)
Q Consensus 414 I~i~-d~--~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~----~~~~v~~~~~sp 486 (545)
++.- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+.. ....+..+.+.+
T Consensus 185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence 5544 42 3344432 23456889999999999887777888777643222 11111111 123588899998
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEE-Eec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++. +++++.++.| ++..+.++.- .+. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 5555667767 4445555433 222 234668889997554 466777889887653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-06 Score=85.12 Aligned_cols=233 Identities=9% Similarity=0.074 Sum_probs=140.2
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC----cEEEEECCCC
Q 009059 307 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 381 (545)
Q Consensus 307 ~V~~l~~sp-~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg----~I~lwd~~~~ 381 (545)
....|+|+| ++..|+.+...+.|+.+|+.... +..+.........++|+++++.++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 45667666665889999998654 3344445567899999999876776655333 2333443 23
Q ss_pred cee--eEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe--CCcE
Q 009059 382 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 455 (545)
Q Consensus 382 ~~~--~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s--dg~I 455 (545)
... ..+........++++|+++.|+++. ..+.|..|+...+....... +.......++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345577889999555566555 57899999998776522222 1224578999999999666665 6689
Q ss_pred EEEEcCCCC-CcceEEEEeeC---------------CCceE-EEEEc--------CCCCEEEEEE-cCCeEEEEeCCCCe
Q 009059 456 RVWSIGSGS-KGECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 509 (545)
Q Consensus 456 ~vwd~~~~~-~~~~i~~~~~~---------------~~~v~-~~~~s--------p~~~~l~~~~-~dg~I~iwd~~~~~ 509 (545)
.+++..... ....+..+.+. -.... .++.. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 998875321 00011122211 01122 44543 3344 55554 445899998 4555
Q ss_pred EEEeccC---------C---------CCeeEEEEeCCCCEEEEE-eCCCcEEEc
Q 009059 510 TLTLSAH---------D---------KLVSSLAASTVNGMVASA-SHDKCVKIW 544 (545)
Q Consensus 510 ~~~~~~h---------~---------~~V~~l~~spd~~~las~-s~Dg~I~iW 544 (545)
...+.+. . .....|++++++..|+.+ ..+..|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 257899999954444444 445667654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-05 Score=72.96 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=140.0
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEec-cCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~~-~~~v 393 (545)
+|+.+. ...|+..|+..... ...+. ....+..++|++.+..++++-..++.|+.+++.. ......+.. -...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987654 33333 3456889999998778887877789999999876 222222221 2356
Q ss_pred eEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i 469 (545)
..+++.+.++.|+.+. ..+.|.++++........+.........++++|.+.+|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 8899998667776664 478999999986544433443445789999999766555554 3 578888875431 11
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
......-.....+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888877755 59999999865444332 123456788885 34444444455666554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-05 Score=78.74 Aligned_cols=227 Identities=9% Similarity=0.029 Sum_probs=147.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+..
T Consensus 81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 444444 3344444 345688888876543 223333456889999988778887777788999999987654443332
Q ss_pred -cCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCC
Q 009059 390 -QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGS 464 (545)
Q Consensus 390 -~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~ 464 (545)
......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... . +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 234678899987777766654 67899999876544444444446789999999777666665 4 578888876532
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
........-.....++|+|++..|+.+... +.|..+|+...... .+.........|++. .+.++++-...+.|.
T Consensus 237 ---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 237 ---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSIN 312 (386)
T ss_dssp ---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEE
Confidence 112222334457899999888878877665 48999999765544 333334567788883 344444444455555
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
.+
T Consensus 313 ~~ 314 (386)
T 3v65_B 313 SA 314 (386)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-05 Score=76.14 Aligned_cols=227 Identities=9% Similarity=0.049 Sum_probs=144.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 309 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 309 ~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444442 344444 344588888875443 22222344588999998877888777778899999998765444333
Q ss_pred c-cCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCC
Q 009059 389 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 463 (545)
Q Consensus 389 ~-~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~ 463 (545)
. ......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+... . +.|..+++...
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234678999987777766654 67999999886544333444446789999999776666555 4 67888887643
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEE-eccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~-~~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.. .......-.....+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 193 ~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 193 GR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp SC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred Cc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 21 11112234457899999988878877764 489999998654443 33334567788873 34444443344555
Q ss_pred EE
Q 009059 542 KI 543 (545)
Q Consensus 542 ~i 543 (545)
..
T Consensus 269 ~~ 270 (349)
T 3v64_C 269 NS 270 (349)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00014 Score=73.70 Aligned_cols=230 Identities=8% Similarity=-0.037 Sum_probs=149.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCC---eeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..++........+. ....+..|+|++....|+.+ ...+.|..+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555544 4688888887765544443 45668899999866655555 456889999987521 11223333445678
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 429 (545)
.+++.+.+..++++-...+.|.+.++........+. .......+++.|.++.|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 999998767788777778899999998665444443 2345889999998888887764 3789999987654433334
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 506 (545)
..-.....|++++++..|+.+. .+.|..+|+..... ..+............+++. +..|+.+. ..+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3446789999999888777776 56899999865422 2222211223445566663 33455554 44588888866
Q ss_pred CCeEE
Q 009059 507 ENKTL 511 (545)
Q Consensus 507 ~~~~~ 511 (545)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 65433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-05 Score=75.43 Aligned_cols=227 Identities=7% Similarity=0.010 Sum_probs=143.9
Q ss_pred EEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEeccCcccEEE
Q 009059 277 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 353 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~ 353 (545)
+|+.+. ...|+.++++... ....+. ....+..++|.+....| ++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 444443 4678889987653 222222 23456789999855544 454557889999987653212222222345678
Q ss_pred EEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecC
Q 009059 354 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 354 l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~ 430 (545)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++...........
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 8898877778877777889999998754333222 22345789999998788887774 57899999875433222333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCC
Q 009059 431 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 507 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~ 507 (545)
.-...+.|++++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+. ..+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777666 66899999865321 222 222344566777753 3344444 445899999866
Q ss_pred CeE
Q 009059 508 NKT 510 (545)
Q Consensus 508 ~~~ 510 (545)
++.
T Consensus 239 G~~ 241 (318)
T 3sov_A 239 GEG 241 (318)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.2e-06 Score=87.95 Aligned_cols=252 Identities=9% Similarity=-0.023 Sum_probs=148.6
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccCC----ccEEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeeEecc
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h~----~~V~~-l~~sp~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
|++++.|+.|..+|..+|+.+....... ..+.+ ..+. ++ .+++++ .+|.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999987654221 01111 1111 34 455554 3899999999998863332221
Q ss_pred Ccc------------------------------------cE-EEEEEeCCCCcEEEEEcCC----------------CcE
Q 009059 347 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 373 (545)
Q Consensus 347 h~~------------------------------------~V-~~l~~~p~~~~ll~s~s~d----------------g~I 373 (545)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 01 1345556654444 55433 479
Q ss_pred EEEECCCCceeeEEeccCC----------eeEEEEe-CCC---CEEEEEECCCeEEEEECCCCEEEEEecCCC-------
Q 009059 374 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 432 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~~----------v~~l~~s-p~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------- 432 (545)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988765321 1112222 455 346667789999999999999887654211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 009059 433 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 451 (545)
Q Consensus 433 ------~~I--------------------------~~l~~sp~g~~l~s~s----------------------------- 451 (545)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1355666666554431
Q ss_pred -----------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-C
Q 009059 452 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 518 (545)
Q Consensus 452 -----------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~ 518 (545)
.+.|..||+.+++ .+-..... .....-.+...+..+++++.|+.|+.||.++++++ .+.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~---~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGD---YKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCC---EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCC---EEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 2467777777763 33333211 11111112235567888999999999999999988 443222 1
Q ss_pred CeeEEEEeCCCC-EEEEEe
Q 009059 519 LVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 519 ~V~~l~~spd~~-~las~s 536 (545)
...-+.+..+|+ |+++.+
T Consensus 517 ~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEEc
Confidence 122345556776 454443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-05 Score=84.68 Aligned_cols=257 Identities=9% Similarity=0.026 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc----cEE-EEEEcC---CCC-EEEEEe------CCCeEEEEECCCCCe
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY 339 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~----~V~-~l~~sp---~~~-~l~t~s------~dg~I~vwd~~~~~~ 339 (545)
+..|+.++.|+.|.-+|.++|+.+........ .+. ...+.. +++ .+++++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45777888899999999999999876643221 111 111111 233 555554 378999999998875
Q ss_pred eeeEeccCcccE-----------------------------------------EEEEEeCCCCcEEEEEc----------
Q 009059 340 SLRTFTGHSTTV-----------------------------------------MSLDFHPSKEDLLCSCD---------- 368 (545)
Q Consensus 340 ~~~~~~~h~~~V-----------------------------------------~~l~~~p~~~~ll~s~s---------- 368 (545)
.. ........+ ..+++.|....+++..+
T Consensus 197 ~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IW-MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EE-EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Ee-ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 33 222110000 12455666554443332
Q ss_pred --C-------C----CcEEEEECCCCceeeEEeccCC-------e---eEEEEe-CCCC---EEEEEECCCeEEEEECCC
Q 009059 369 --N-------N----SEIRYWSINNGSCAGVFKCQSG-------A---TQMRFQ-PRLG---RILAAAIENYISILDVET 421 (545)
Q Consensus 369 --~-------d----g~I~lwd~~~~~~~~~~~~~~~-------v---~~l~~s-p~~~---~l~~~~~dg~I~i~d~~~ 421 (545)
. | +.|..+|..+++.+..+..... + .-+... .+++ .++.++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 5899999999999988764211 1 112222 3553 567788899999999999
Q ss_pred CEEEEEecCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 009059 422 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 451 (545)
Q Consensus 422 ~~~~~~~~~h~~--~I-------------------------------------------~~l~~sp~g~~l~s~s----- 451 (545)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876543210 00 1235566544444322
Q ss_pred -----------------------------CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE
Q 009059 452 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 502 (545)
Q Consensus 452 -----------------------------dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i 502 (545)
++.|..||+.+++ .+-...... .+..-.....+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~---~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK---VVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC---EEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC---EEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 4578888988873 333333221 2221122224567888999999999
Q ss_pred EeCCCCeEE-EeccCCCCe-eEEEEeCCCC-EEEEEe
Q 009059 503 WNMTENKTL-TLSAHDKLV-SSLAASTVNG-MVASAS 536 (545)
Q Consensus 503 wd~~~~~~~-~~~~h~~~V-~~l~~spd~~-~las~s 536 (545)
||.++++.+ .+......+ .-+.+..+|+ |+++.+
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 999999998 443322211 2256667786 454443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-05 Score=72.69 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=132.0
Q ss_pred EeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEECCCeEEEEECC
Q 009059 343 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 420 (545)
Q Consensus 343 ~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~ 420 (545)
.+.+-...+..++|+|+++.|+++...++.|...|.. ++.++.+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999988888888889999999998 8888887654 467889999886544444457889999876
Q ss_pred CCE---EEEEec------CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-------eCCCceEEEE
Q 009059 421 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 483 (545)
Q Consensus 421 ~~~---~~~~~~------~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-------~~~~~v~~~~ 483 (545)
... .+.... ......-.|+|+|.+..|+++. .+...+|.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 533 222221 1344568999999997777776 4444555553110001111111 1234578999
Q ss_pred EcCCCCEEEEEEcC-CeEEEEeCCCCeEE---Eecc-C------CCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 484 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 484 ~sp~~~~l~~~~~d-g~I~iwd~~~~~~~---~~~~-h------~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
++|....|++.+.. ..|.++|.... .+ .+.. . -.....|+|.++|++.++ ++-+.++++
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987766666655 48999998765 44 2321 1 125688999999985555 676666654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-06 Score=91.03 Aligned_cols=238 Identities=10% Similarity=0.040 Sum_probs=134.2
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----cEEEEEcCCC-eEEE-EeccCCccEEEEEEcCCCCEEEEEeCC-----CeEEE
Q 009059 265 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 331 (545)
Q Consensus 265 ~V~~l~~s-pdg~~latg~~-dg----~I~lwd~~~~-~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~v 331 (545)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999886643 22 5999999988 6321 111 113468899999988877665 36888
Q ss_pred EECCCCCee-eeEec-cCcccEEEEEEeCCCCcEEEEEcC--CCcEEEEECCCCc--e--eeEEec-cCCeeEEEEeCCC
Q 009059 332 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 402 (545)
Q Consensus 332 wd~~~~~~~-~~~~~-~h~~~V~~l~~~p~~~~ll~s~s~--dg~I~lwd~~~~~--~--~~~~~~-~~~v~~l~~sp~~ 402 (545)
+++.++... ...+. ........+.|+|+++.++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888765421 22222 223456788999999888876643 3468889998752 2 211111 12234444443 5
Q ss_pred CEEEEEECC-----CeEEEEECCCCEEEEE-ecCCCC--CEEEEEEcCCCCEEEE-Ee-CC--cEEEEEc-------CCC
Q 009059 403 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLAS-VS-DE--LVRVWSI-------GSG 463 (545)
Q Consensus 403 ~~l~~~~~d-----g~I~i~d~~~~~~~~~-~~~h~~--~I~~l~~sp~g~~l~s-~s-dg--~I~vwd~-------~~~ 463 (545)
+.|+..+.. ..|..+|+.+...... +..+.. .+..+.+. +..|+. .. ++ .|.++++ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666665543 2688888875211111 222333 34555554 444444 44 67 5666675 222
Q ss_pred CCcceEEEEeeCC-CceEEEEE----cCCCCEE-EEEEcC---CeEEEEeCCCCeEE
Q 009059 464 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 511 (545)
Q Consensus 464 ~~~~~i~~~~~~~-~~v~~~~~----sp~~~~l-~~~~~d---g~I~iwd~~~~~~~ 511 (545)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..++.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 012222111 12233322 3455444 444433 27888898877654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00018 Score=72.80 Aligned_cols=219 Identities=9% Similarity=0.015 Sum_probs=142.6
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v 393 (545)
+|+.+. ...|+..++..... ..+......+..++|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46788889886543 2333345678999999987788877777889999998752 2222222 22457
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i 469 (545)
..+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 88999986666666654 68999999987655544544455689999999776666555 3588888886532 12
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
......-.....+++++++..|+.+... +.|..+|++......+.. ......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2222333568899999988888888764 589999998765543321 23456677773 33344444445566543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-05 Score=78.43 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=139.2
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC---C-cEEEEECCC
Q 009059 307 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 380 (545)
Q Consensus 307 ~V~~l~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d---g-~I~lwd~~~ 380 (545)
....|+|.|+ ...|+.+...+.|+.+|..++. +..+.........++|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4568999984 4556666554889999997654 444444556789999999987 66454321 1 233333322
Q ss_pred Cce-eeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEe-c-CCCCCEEEEEEcCCCCEEEEEe--CCc
Q 009059 381 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL 454 (545)
Q Consensus 381 ~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~-~-~h~~~I~~l~~sp~g~~l~s~s--dg~ 454 (545)
+.. ...+........+++++..+.|+++. .++.|+.+|..++.....+ . +.......++|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 11222334567789999545566555 5788999999877652222 1 1223345799999999666665 568
Q ss_pred EEEEEcCC--CCCcceEEEEeeC---------------CCceEEEEE---------cCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 455 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 455 I~vwd~~~--~~~~~~i~~~~~~---------------~~~v~~~~~---------sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
|+.+++.. +.. .....+.+. -.....+++ .+++.++++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988753 211 111112111 123567888 666664444444568999985 55
Q ss_pred eEEEeccC------------------CCCeeEEEEe-CCCCEEEEEeCCCcEEEc
Q 009059 509 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 544 (545)
Q Consensus 509 ~~~~~~~h------------------~~~V~~l~~s-pd~~~las~s~Dg~I~iW 544 (545)
....+.+. -.....|+++ +++.++++=..+.+|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1237789999 555555554456677754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00013 Score=71.43 Aligned_cols=221 Identities=10% Similarity=0.011 Sum_probs=140.6
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EEe-ccCCeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQM 396 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~~-~~~~v~~l 396 (545)
+|+.+ ....|+.+++................+..++|++.+..++++-...+.|+.+++....... .+. .-.....+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 34443 3567999999865421222222234677999999777788777778899999998664222 222 22457789
Q ss_pred EEeCCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEE
Q 009059 397 RFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 397 ~~sp~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~ 472 (545)
++.+.++.|+.+. ..+.|.++++........+.........++++|.+.+|+... .+.|..+++..... . ...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~--~~~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F--III 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E--EEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E--EEE
Confidence 9998667776665 467999999876543333334456789999998766666555 35788888764321 1 112
Q ss_pred eeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 473 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 473 ~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
...-.....+++++++..|+.+... +.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 2233557899999988888887764 5899999976544433 23445567777753 3344444344555543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.52 E-value=4.4e-05 Score=74.57 Aligned_cols=195 Identities=13% Similarity=0.213 Sum_probs=133.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC----CC---EEEEEeC---CCeEEEEECCCCCeeeeE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~----~~---~l~t~s~---dg~I~vwd~~~~~~~~~~ 343 (545)
...+++.....+-+.+||+ .++.+..+.. +.++.+...|+ ++ ++++... +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3445565567789999999 7888888864 55777777663 22 2333333 579999977422222444
Q ss_pred ecc------Cc-ccEEEEEE--eCC-CCcEEEEEcCCCcEEEEECC-------CCceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 344 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 344 ~~~------h~-~~V~~l~~--~p~-~~~ll~s~s~dg~I~lwd~~-------~~~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
+.. .. ..++.+++ +|. +..+++....+|.+..|++. +.+.++.+.....+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 56777887 664 44456678888999999883 346778888888999999999999999
Q ss_pred EEECCCeEEEEECC-----CCEEEEEec-CC-CCCEEEEEE--cCCCC-EEEEEe--CCcEEEEEcCCCCCcceEEEEe
Q 009059 407 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCW--NTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 407 ~~~~dg~I~i~d~~-----~~~~~~~~~-~h-~~~I~~l~~--sp~g~-~l~s~s--dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++-.+..|..|+.+ +++.+..+. ++ ...+..|++ .++++ ||++++ ++.+.+||.... ...+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~--~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK--NKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT--CCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC--CcEEEEEE
Confidence 99999888888866 355665543 22 246888887 45555 666666 779999999622 14455543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00042 Score=65.10 Aligned_cols=201 Identities=11% Similarity=0.094 Sum_probs=134.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 257 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
+.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+. +-......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4566777789999999976654 556778899999987 78777763 22356788999988887777667788999987
Q ss_pred CCCCe--eeeEec------cCcccEEEEEEeCCCCcEEEEEcCCC-cEEEEEC-CCCceeeEEe--------ccCCeeEE
Q 009059 335 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 396 (545)
Q Consensus 335 ~~~~~--~~~~~~------~h~~~V~~l~~~p~~~~ll~s~s~dg-~I~lwd~-~~~~~~~~~~--------~~~~v~~l 396 (545)
..... .+.... ........++|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65442 112221 13345789999999878886665554 4555551 1111122221 12357899
Q ss_pred EEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCC---------CCEEEEEEcCCCCEEEEEeCCcEEEEE
Q 009059 397 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWS 459 (545)
Q Consensus 397 ~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~I~~l~~sp~g~~l~s~sdg~I~vwd 459 (545)
+++|..+.+++.+. ...|.++|.... .+..+.-.. ...-.|+|.++|++++++..+.+++|.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 99998887777665 678999997754 444333221 367899999999977665455666664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.7e-05 Score=76.37 Aligned_cols=234 Identities=11% Similarity=0.142 Sum_probs=141.0
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCC
Q 009059 265 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD 338 (545)
Q Consensus 265 ~V~~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d-g----~I~vwd~~~~~ 338 (545)
....|+|+| ++..|.++...+.|+.+|...+....... .......|+|++++++|+.+... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45566666555889999998766554443 45568899999999966666542 1 34444433 22
Q ss_pred ee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEEC-CCeE
Q 009059 339 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-ENYI 414 (545)
Q Consensus 339 ~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~~-dg~I 414 (545)
.. ...+. .......++++|++..++++-..++.|+.++...+......... .....++|+|++++++++.. .+.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 12222 12346778899955567767667889999999876653333322 34788999999996666654 6789
Q ss_pred EEEECCC--CEE--EEEecCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCcEEEEEcCCCCC
Q 009059 415 SILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 465 (545)
Q Consensus 415 ~i~d~~~--~~~--~~~~~~h---------------~~~I~-~l~~s--------p~g~~l~s~s-dg~I~vwd~~~~~~ 465 (545)
..++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-- 371 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-- 371 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence 9987653 221 1112111 01233 45553 3355555544 568888873 23
Q ss_pred cceEEEEeeC------------------CCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 466 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 466 ~~~i~~~~~~------------------~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
.+..+.+. -.....+++++++..|+++.. ...|+.++++
T Consensus 372 --~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 --RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp --EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred --cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222221 124788899985445555554 4477777654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00031 Score=77.13 Aligned_cols=230 Identities=8% Similarity=-0.031 Sum_probs=147.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCC---eeeeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~---~~~~~~~~h~~~V~ 352 (545)
+|+.+. ...|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4578888887655444443 345678999998555554 44556789999987531 11223332345677
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 429 (545)
.|++.+.+..|+++-...+.|.+.++........+. .......|++.|.+++|+.+.. .+.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899998888888888888999999998554433333 2345889999998888887764 2689999998665544444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~ 506 (545)
..-.....|++++.+..|+.+. .+.|..+++..... ..+......-.....+++. +.+|+.+... +.|...|..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 4446789999998877777766 55899999865422 2222111112334556653 3456666654 588888876
Q ss_pred CCeEE
Q 009059 507 ENKTL 511 (545)
Q Consensus 507 ~~~~~ 511 (545)
+++.+
T Consensus 632 tG~~~ 636 (791)
T 3m0c_C 632 TGSDV 636 (791)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 66443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00019 Score=74.06 Aligned_cols=232 Identities=11% Similarity=0.095 Sum_probs=138.6
Q ss_pred cEEEEEEcC-CCCEEEEEe-CCCeEEEEECCCCCeeeeEecc----CcccEEEEEE-------eCCCCcEEEEEcCCC--
Q 009059 307 WITDVRFSP-SLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HSTTVMSLDF-------HPSKEDLLCSCDNNS-- 371 (545)
Q Consensus 307 ~V~~l~~sp-~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~----h~~~V~~l~~-------~p~~~~ll~s~s~dg-- 371 (545)
....|+|.| +...|+.+. ..+.|++.|+..+.. ..+.. .......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v--~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML--SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE--EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE--EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344455544 446788899887553 33321 1235899999 999887776655442
Q ss_pred ----cEEEEECCC-Ccee-----eEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECC-------CCEE---------
Q 009059 372 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 424 (545)
Q Consensus 372 ----~I~lwd~~~-~~~~-----~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~-------~~~~--------- 424 (545)
.|.+++... +... ..+........++++|+++.|+++. .++.|+.+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2232234567889999767776666 47789999987 4432
Q ss_pred -----EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcce--EEEEeeC---------------CCceE
Q 009059 425 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKFH 480 (545)
Q Consensus 425 -----~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~--i~~~~~~---------------~~~v~ 480 (545)
+... +.......|+|+|+|++|+.+. .+.|+.++...... .. ...+.+. -....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 56898876543211 10 0122111 01234
Q ss_pred -EEEEc-------CCCCEEEEEE-cCCeEEEEeCCCCeEEEeccC------------------------CCCeeEEEEeC
Q 009059 481 -SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAAST 527 (545)
Q Consensus 481 -~~~~s-------p~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h------------------------~~~V~~l~~sp 527 (545)
.++.. .++. |+++. ....|+.++ .++...++.+. -.....|++++
T Consensus 376 ~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44454 3455 55554 456999999 45655554332 12367899999
Q ss_pred C-CCEEEEEeCCCcEEEc
Q 009059 528 V-NGMVASASHDKCVKIW 544 (545)
Q Consensus 528 d-~~~las~s~Dg~I~iW 544 (545)
+ +.++++=..+.+|+.+
T Consensus 454 ~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEeCCCCEEEEE
Confidence 7 5555544456677765
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00023 Score=72.85 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=138.6
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----Ce-EEEEECCCC
Q 009059 265 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RT-VRVWDTENP 337 (545)
Q Consensus 265 ~V~~l~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~-I~vwd~~~~ 337 (545)
....++|+|+ ...|..+...+.|+.++..+++...... .......|+|+++++ |+.+... .. +...+....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4668999984 3455555444899999998877665543 445689999999999 4444432 12 333333221
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE-Eecc--CCeeEEEEeCCCCEEEEEEC-CCe
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-ENY 413 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~-~~~~--~~v~~l~~sp~~~~l~~~~~-dg~ 413 (545)
......+. .-.....++++|+...++++-..++.|+.+|..++..... +... .....++|+|++++|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11011111 2234567889995456665666678899999987766322 2221 12346999999987776665 678
Q ss_pred EEEEECC--CCEE--EEEecCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCcEEEEEcCCCC
Q 009059 414 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 414 I~i~d~~--~~~~--~~~~~~h---------------~~~I~~l~~---------sp~g~~l~s~s-dg~I~vwd~~~~~ 464 (545)
|+.++.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 2311 1111111 124677999 67777666655 668998874 22
Q ss_pred CcceEEEEeeC------------------CCceEEEEEcCCCCEEEEEEc-CCeEEEEeCC
Q 009059 465 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 506 (545)
Q Consensus 465 ~~~~i~~~~~~------------------~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 506 (545)
.+.++.+. -.....++++|....|+++.. .+.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22333221 123567888843333555443 4477776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-05 Score=84.31 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=117.6
Q ss_pred cEEEEEEe-CCCCcEEEEEcCCC----cEEEEECCCC-ceee-EEeccCCeeEEEEeCCCCEEEEEECC-----CeEEEE
Q 009059 350 TVMSLDFH-PSKEDLLCSCDNNS----EIRYWSINNG-SCAG-VFKCQSGATQMRFQPRLGRILAAAIE-----NYISIL 417 (545)
Q Consensus 350 ~V~~l~~~-p~~~~ll~s~s~dg----~I~lwd~~~~-~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~I~i~ 417 (545)
.+....|+ |+|+.++++.+.+| .|+++|+.++ +.+. .+. .....+.|+|+++.|+....+ ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57789999 99988887776554 4999999988 6332 121 123568899999888887765 368889
Q ss_pred ECCCCE--EEEEec-CCCCCEEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCcce-EEEE-eeCCCceEEEEEcCCC
Q 009059 418 DVETQV--CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGEC-IHEL-SCTGNKFHSCVFHPTF 488 (545)
Q Consensus 418 d~~~~~--~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-d---g~I~vwd~~~~~~~~~-i~~~-~~~~~~v~~~~~sp~~ 488 (545)
++.++. ....+. ........+.|+|||++|+... + ..|+++|+.++.. .. +..+ .........+.|+. +
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-T
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-C
Confidence 998753 122222 2334567889999999888765 2 2788899876521 11 1222 22334455555554 4
Q ss_pred CEEEEEEc-C----CeEEEEeCCC-CeEEE-eccCCC--CeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 489 PSLLVIGC-Y----ETLELWNMTE-NKTLT-LSAHDK--LVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 489 ~~l~~~~~-d----g~I~iwd~~~-~~~~~-~~~h~~--~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
..|+..+. + ..|..+|+.+ +.... +..|.. .+..+.+. .+.++++...||..+||
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 44544443 3 2788888875 23223 333443 34555554 23455667777766654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00095 Score=73.34 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=139.7
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC----ceeeEEe-ccCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~----~~~~~~~-~~~~v 393 (545)
+|+.+ ....|+..++..... ..+......+..|+|++....++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 44443 445688888876543 2333345678899999977778877777888999998753 2222232 22457
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i 469 (545)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+... . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988777777665 68999999987655444444556789999999866666555 3 57888888653 222
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEec-c--CCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS-A--HDKLVSSLAASTVNGMVASAS-HDKCVK 542 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~-~--h~~~V~~l~~spd~~~las~s-~Dg~I~ 542 (545)
..+...-.....|++++....|+.+... +.|..+++.......+. . .-....+|++. +..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2233334678899999888888888654 48999999876655332 2 22345566664 33444444 334444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-05 Score=83.79 Aligned_cols=228 Identities=7% Similarity=-0.028 Sum_probs=128.2
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCCeeee-Ee-ccCcccEEEEEEeCCCCcEEEEEc-CCCcEE
Q 009059 310 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 374 (545)
Q Consensus 310 ~l~~sp-~~~~l~t~s~dg-----------~I~vwd~~~~~~~~~-~~-~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~ 374 (545)
.+++.+ ++++++.|+.+. .+.+||..+...... .+ ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 456677 888888887643 688999987764221 22 12333344567777765 555665 556899
Q ss_pred EEECCCCceeeEEecc--CCeeEEEEeCCCCEEEEEE-CC-----CeEEEEECCCCEEEEEe----cCCCCCEEEEEEcC
Q 009059 375 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 442 (545)
Q Consensus 375 lwd~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~~~~-~d-----g~I~i~d~~~~~~~~~~----~~h~~~I~~l~~sp 442 (545)
+||..+.+....-... ..-..+++.+++..+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 9999877544332221 1234556667878888887 34 57999999887643320 00000000011223
Q ss_pred CCCEEEEEe-C---------CcEEEEEcCCCCCcceEEEEee------CCCceEEEEEcC-CCCEEEEEEcCC-------
Q 009059 443 SGEYLASVS-D---------ELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 498 (545)
Q Consensus 443 ~g~~l~s~s-d---------g~I~vwd~~~~~~~~~i~~~~~------~~~~v~~~~~sp-~~~~l~~~~~dg------- 498 (545)
++..++.++ + ..+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 444444443 3 3578888876532111111111 011223444443 667677776432
Q ss_pred ----eEEEEeCCCCeEEEec---cCCCC-eeEEEEeCCCCEEEEEeCC
Q 009059 499 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 538 (545)
Q Consensus 499 ----~I~iwd~~~~~~~~~~---~h~~~-V~~l~~spd~~~las~s~D 538 (545)
.|.+||..+.....+. -+... -.++...|++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6889998887766442 12222 2345667899999999865
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0013 Score=70.66 Aligned_cols=218 Identities=9% Similarity=0.016 Sum_probs=143.8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 397 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~ 397 (545)
+|+.+ ....|+..+++............-..+..++|++.+..++++-..++.|+.+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 456799999986543222112233568899999988888878778899999999865444444322 3577899
Q ss_pred EeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceEEEEe
Q 009059 398 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 398 ~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+... .+.|...++..... ..+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE---E
Confidence 9987777777665 67899999976543333333445689999998655555554 34788888765422 222 2
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-CCCcEEE
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKI 543 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~i 543 (545)
........+++++++..|+.+... +.|..+|+.......+........+|++.. + .|+.+. ..+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEE
Confidence 245678899999988888888765 489999997755443333444566788764 3 444444 3555554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00064 Score=70.04 Aligned_cols=241 Identities=14% Similarity=0.140 Sum_probs=143.8
Q ss_pred CeEEEEEcC-CCC-EEEEEeCCCcEEEEEcCCCeEEEEeccC---CccEEEEEE-------cCCCCEEEEEeCCC-----
Q 009059 265 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 327 (545)
Q Consensus 265 ~V~~l~~sp-dg~-~latg~~dg~I~lwd~~~~~~~~~l~~h---~~~V~~l~~-------sp~~~~l~t~s~dg----- 327 (545)
....|+|+| +.. ++++-...+.|++.|.+.+.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 344 4444444467899998887776555432 235899999 99999777766553
Q ss_pred --eEEEEECCC-CCee----eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC-------CCce----------
Q 009059 328 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 383 (545)
Q Consensus 328 --~I~vwd~~~-~~~~----~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-------~~~~---------- 383 (545)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443 1221 022221 12456788899777888788888999999997 5543
Q ss_pred -e-eEEec--cCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC--CCCEE--EEEecCC---C------------CCEE-EE
Q 009059 384 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SV 438 (545)
Q Consensus 384 -~-~~~~~--~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~--~~~~~--~~~~~~h---~------------~~I~-~l 438 (545)
. ..+.. ......++|+|+++.++++.. .+.|+.++. .++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 11222 233678999999997666654 678988654 44432 0122111 1 1244 45
Q ss_pred EEc-------CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC------------------------CCceEEEEEcC
Q 009059 439 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 486 (545)
Q Consensus 439 ~~s-------p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~------------------------~~~v~~~~~sp 486 (545)
+.. .++.++++-. .++|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4555555544 668999983 33 23333322 12356788888
Q ss_pred CCCEEEEEEcC-CeEEEEeCCCCeEE
Q 009059 487 TFPSLLVIGCY-ETLELWNMTENKTL 511 (545)
Q Consensus 487 ~~~~l~~~~~d-g~I~iwd~~~~~~~ 511 (545)
+...|+++... ..|+.++++.....
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 63335555544 47888877665443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00091 Score=71.63 Aligned_cols=228 Identities=8% Similarity=-0.002 Sum_probs=139.3
Q ss_pred EEEEEeCCCcEEEEEcCCCe-EEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 277 LLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~-~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+|+-+ ....|+..++.... ....+...-..+..|+|++.+..|+.+.. .+.|..+++.........+...-.....+
T Consensus 11 ~~~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 11 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CEEEE-CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred eEEEe-ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 34443 35678888887543 22222233455789999987666665544 67899999875432122333333578899
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 431 (545)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|.++.|+.+.. .+.|...++............
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 999987888878778899999999855433333 22345788999998888887774 467888887654333333334
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
-...+.|++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..++
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 45789999999877777766 568888888653221111 111222345666555 4555554 458888888766
Q ss_pred eE
Q 009059 509 KT 510 (545)
Q Consensus 509 ~~ 510 (545)
+.
T Consensus 245 ~~ 246 (619)
T 3s94_A 245 EG 246 (619)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0045 Score=66.22 Aligned_cols=276 Identities=8% Similarity=-0.023 Sum_probs=160.0
Q ss_pred CCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCCee
Q 009059 264 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 340 (545)
Q Consensus 264 ~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~--dg~I~vwd~~~~~~~ 340 (545)
.....+++.+.+..| ++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 568899999965554 44456789999998764433333344455778999997666666554 35677777764332
Q ss_pred eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEE-CCCeEEEEE
Q 009059 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA-IENYISILD 418 (545)
Q Consensus 341 ~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d 418 (545)
.......-.....|++.+++..++++-...+.|..+|+.......... .......+++..+ .++.+. ..+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345688999999877888777777889999987543332222 1122445666544 555554 467888888
Q ss_pred CCCCEEEEEecC-----------CC---------------------------CCEEEEEE-----cCC--------CCEE
Q 009059 419 VETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTS--------GEYL 447 (545)
Q Consensus 419 ~~~~~~~~~~~~-----------h~---------------------------~~I~~l~~-----sp~--------g~~l 447 (545)
..+++....+.. |. ....|.|- .++ ..+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876643322211 00 01112110 011 1245
Q ss_pred EEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEEE-eccCCCCeeEEEE
Q 009059 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLT-LSAHDKLVSSLAA 525 (545)
Q Consensus 448 ~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~-~~~h~~~V~~l~~ 525 (545)
+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.+..... +...-..+..|++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 55556677777776543211111111 1245778999997777777765 5689999987754433 3233356778888
Q ss_pred eCCCCEEEEEe-CCCcEEE
Q 009059 526 STVNGMVASAS-HDKCVKI 543 (545)
Q Consensus 526 spd~~~las~s-~Dg~I~i 543 (545)
...++.|+.+. ..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555444443 3455544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0051 Score=65.91 Aligned_cols=224 Identities=8% Similarity=-0.022 Sum_probs=149.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 354 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l 354 (545)
+|+.+ ....|+..++++......+. ..-..+..|+|.+....|+.+ ..++.|..+++..... ...+.........+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55554 35689999988655433332 223468899999866655544 5578999999875432 22233223457789
Q ss_pred EEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE-eccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCC
Q 009059 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 431 (545)
Q Consensus 355 ~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h 431 (545)
++.+.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++.......... .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887788877777889999999754432222 22345789999998788887764 5688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCC
Q 009059 432 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 508 (545)
Q Consensus 432 ~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~ 508 (545)
-.....|++++++..|+.+. .+.|..+|+..... . .+.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~---v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-E---VIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E---EEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-E---EeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56789999999887777776 66899999976432 2 2233344556777765 34666665 568999987665
Q ss_pred e
Q 009059 509 K 509 (545)
Q Consensus 509 ~ 509 (545)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00074 Score=67.03 Aligned_cols=226 Identities=8% Similarity=0.063 Sum_probs=122.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEec---cCCccEEEEEEcCC---CCEEEEEeC-C-----Ce
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT 328 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~---~h~~~V~~l~~sp~---~~~l~t~s~-d-----g~ 328 (545)
-.....++|.|||+++++ ..++.|++++ .++. +..+. ........|+|+|+ +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345778999999986655 5669999998 3432 22221 22456899999998 555555443 2 67
Q ss_pred EEEEECCCCCe-----eeeEec---cCcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCC------
Q 009059 329 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 381 (545)
Q Consensus 329 I~vwd~~~~~~-----~~~~~~---~h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~------ 381 (545)
|..|+...... .+..+. +.......++|.|++. |+++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 88888764321 111122 1112346899999984 5444321 245666665431
Q ss_pred ------ceeeEEe-ccCCeeEEEEeCCCCEEEEEECC-Ce--------EEEEECCC----------------CEEEEEec
Q 009059 382 ------SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ 429 (545)
Q Consensus 382 ------~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~d-g~--------I~i~d~~~----------------~~~~~~~~ 429 (545)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 1111221 12336778999954556655542 22 33332211 01222232
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc---ceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~---~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|+|..+++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2334567777 4566655544 567888877643210 0112222334678899999999754444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0013 Score=64.42 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=130.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec---cCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~---~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~-~~ 338 (545)
...+.++.|.+ +..++ ++..+.|.. ..+.++.-..+. .+...+..|.+.+++..++++ .+|.| |...+ +.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK 152 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence 34688899986 44444 445665443 333343332222 234567888887777666655 45543 22222 22
Q ss_pred eeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEE-EEC--CCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 339 ~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l-wd~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.-......+...+..+.+.+++ .+++.+. +|.++. +|- .+.+.+. ......+..+.+.+++ .+++++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g-~~~~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDG-RLWMIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTS-CEEEEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCC-CEEEEeCCceEE
Confidence 1122233455678999999875 4554554 454444 332 1222221 1223467888888885 566777788888
Q ss_pred EEECCCCEEEEEecC----CCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 416 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 416 i~d~~~~~~~~~~~~----h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
+.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++....+.....+.........+..+.|.+++ .+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence 775333433322221 2245899999998898888888876 45555553322211111123567888887554 47
Q ss_pred EEEEcCCeEEEEeC
Q 009059 492 LVIGCYETLELWNM 505 (545)
Q Consensus 492 ~~~~~dg~I~iwd~ 505 (545)
++++.+|.|.-++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 78888888777653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.07 E-value=9.3e-06 Score=88.53 Aligned_cols=225 Identities=8% Similarity=-0.027 Sum_probs=135.0
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC---CeeeeEeccCcccEEEEEEeCC
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 359 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~~p~ 359 (545)
.+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888877665544433 34567899998766666654 4578999998751 1112222212234567888866
Q ss_pred CCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEecCCCCCEE
Q 009059 360 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 360 ~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
+..|+++-...+.|.++++........+.. ......+++.|.+++|+.+.. .+.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 667776666678899999876544333322 244678899997777776654 26888888764332222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEE
Q 009059 437 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLT 512 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~ 512 (545)
.|+|+|++..|+.+. .+.|.++++..... ..+............+++..+ .|+.+. ..+.|..+|..+++.+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceE
Confidence 899999876665555 56899999864321 222111111223345555443 455544 44689999988877663
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0057 Score=60.60 Aligned_cols=229 Identities=10% Similarity=0.056 Sum_probs=125.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe-EEEEec---cCCccEEEEEEcCC---CCEEEEEeC----C----C
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 327 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~-~~~~l~---~h~~~V~~l~~sp~---~~~l~t~s~----d----g 327 (545)
-.....++|.|||+++++ ..++.|++++ .+++ .+..+. ........|+|+|+ +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 345789999999985555 5669999997 4454 222221 22356899999997 555555443 3 5
Q ss_pred eEEEEECCCCC------ee-eeEecc-CcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCCc----
Q 009059 328 TVRVWDTENPD------YS-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS---- 382 (545)
Q Consensus 328 ~I~vwd~~~~~------~~-~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~~---- 382 (545)
.|..|+..... .. +..+.. .......|+|.|++. |+++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67777766431 11 111221 111346799999985 4444321 2456666654220
Q ss_pred ---eeeEEe-ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECCC----------------CEEEEEecCCCCCEEEE
Q 009059 383 ---CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSV 438 (545)
Q Consensus 383 ---~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~~----------------~~~~~~~~~h~~~I~~l 438 (545)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 011111 223467899999556666665432 244433211 01223331123467888
Q ss_pred EEc-------CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-eCCCceEEEEEcCCCCEEEEE
Q 009059 439 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 439 ~~s-------p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~~~~~v~~~~~sp~~~~l~~~ 494 (545)
+|. .+|.++++.. .+.|...++...........+. .....+..+++.|+|..+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 884 4566666555 6688888886431111112222 224568899999999644443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.002 Score=62.92 Aligned_cols=180 Identities=11% Similarity=0.185 Sum_probs=117.9
Q ss_pred cEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCC----CCE--EEEE-EC---CCeEEEEEC--CCCEEEEEec
Q 009059 362 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGR--ILAA-AI---ENYISILDV--ETQVCRLKLQ 429 (545)
Q Consensus 362 ~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~----~~~--l~~~-~~---dg~I~i~d~--~~~~~~~~~~ 429 (545)
.+++.....+.+.+||+ +++.+..+.. ..++.+.+-|. +.. ++++ .. ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 34556667788999999 7888887754 56677666653 221 3333 33 478999966 3443 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCcEEEEEcCCC----CCcceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 430 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~------h~-~~I~~l~~--sp~-g~-~l~s~s-dg~I~vwd~~~~----~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
. .. ..+..+|+ ++. ++ ++++.. ++.+..|++... -..+.+.++.. ...+..|+..+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56677887 774 54 455555 889999998432 12345566654 567899999999999999
Q ss_pred EEcCCeEEEEeCC-----CCeEEEeccC---CCCeeEEEE--eCCCC-EEEEEe-CCCcEEEcC
Q 009059 494 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAA--STVNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~-----~~~~~~~~~h---~~~V~~l~~--spd~~-~las~s-~Dg~I~iWd 545 (545)
+-.+..|..|+.+ +++.+...+. ...+..|++ .++++ ||++++ .+.++.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445533322 246888888 45555 666666 556777764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.021 Score=62.74 Aligned_cols=260 Identities=12% Similarity=0.048 Sum_probs=153.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
...|.||.-..+| +|-.|+.+| +..||-...+..... ......|.++....++ .|..|+.+| +..||..+....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~- 95 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYE- 95 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEEC-
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEE-
Confidence 4679999998888 455566666 666774332211111 1123568888777665 566777666 788998765431
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----ccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
.........|.++... ++ .+. .+..+ .|..||..+++...... ....+.++....++ .+.+++. +.|..
T Consensus 96 ~~~~~~~~~i~~i~~~-~g-~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~-~Gl~~ 169 (758)
T 3ott_A 96 QPETDFPTDVRTMALQ-GD-TLW-LGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDN-QIYVGTY-NGLCR 169 (758)
T ss_dssp CCSCCCCSCEEEEEEE-TT-EEE-EEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTC-CEEEEET-TEEEE
T ss_pred CcccCCCceEEEEEec-CC-cEE-EEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCC-CEEEEeC-CCHhh
Confidence 1111122357776543 33 444 44444 68889987665432211 12347777777764 4555665 46888
Q ss_pred EECCCCEEEEEe-cCC----CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 417 LDVETQVCRLKL-QGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 417 ~d~~~~~~~~~~-~~h----~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
||..+++..... ... ...|.++....++..|..+.++-+..+|..+... .....+ ....|.++....++. |
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~-~~~~~l--~~~~i~~i~~d~~g~-l 245 (758)
T 3ott_A 170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQI-KQTEAF--HNNSIKSLALDGNGD-L 245 (758)
T ss_dssp EETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEE-EEEEEE--EEEEEEEEEECTTCC-E
T ss_pred CccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeE-EeccCC--CCCeEEEEEEcCCCC-E
Confidence 998877543221 111 2348899888877755555555688888765421 111112 234588888888887 5
Q ss_pred EEEEcCCeEEEEeCCCCeEEEecc--------CCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 492 LVIGCYETLELWNMTENKTLTLSA--------HDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~~~~~~~~--------h~~~V~~l~~spd~~~las~s~Dg 539 (545)
.+|+ ++.|.+++..+++...+.. ....|.++....+|.+.+ |+..|
T Consensus 246 WigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 246 LAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp EEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred EEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 5566 4578899987766543321 124588888887776554 33445
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.96 E-value=0.036 Score=63.47 Aligned_cols=167 Identities=10% Similarity=0.023 Sum_probs=105.1
Q ss_pred cEEEEECCCCceeeEEeccCC--eeEEEE---eCC-CCEEEEEE----------CCCeEEEEECCCCEEEEEe-cCCCCC
Q 009059 372 EIRYWSINNGSCAGVFKCQSG--ATQMRF---QPR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQ 434 (545)
Q Consensus 372 ~I~lwd~~~~~~~~~~~~~~~--v~~l~~---sp~-~~~l~~~~----------~dg~I~i~d~~~~~~~~~~-~~h~~~ 434 (545)
.|++.|..+.+.+..+..... +.+++. ..+ ..++++|+ ..|.|++|++..++..... ...++.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 477788887777766665433 444443 222 36777777 2478999998755432221 124678
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCCCeEEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLT 512 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~~~~~ 512 (545)
|++++-- +| +|+++-...|++|++...+... ...... ..+..+.....+.++++|..-..|.+ |+...++...
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 9998754 34 6666667899999997653222 111111 22333333345778999998886665 5556666654
Q ss_pred ec--cCCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 513 LS--AHDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 513 ~~--~h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
+. .+...++++.+-.+ ..++.+..+|.|.+.
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 43 45667888888654 477889999998875
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0046 Score=59.83 Aligned_cols=193 Identities=10% Similarity=0.133 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEE-ecc----C--CccEEEEEE---cCCCCEEEEEe----------
Q 009059 266 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----H--TQWITDVRF---SPSLSRLATSS---------- 324 (545)
Q Consensus 266 V~~l~~spdg~~latg~-~dg~I~lwd~~~~~~~~~-l~~----h--~~~V~~l~~---sp~~~~l~t~s---------- 324 (545)
-.+++|.+....|..++ ..+.|..|+...+..... +.+ . ...+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 44689987544555555 789999999875543333 322 1 124689999 68877777544
Q ss_pred ---CCCeEEEEECC---CCCeeee-EeccC-----------cccEEEEEEeCCCCcEEEEEcCC-CcEEEEECCCCceee
Q 009059 325 ---ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSCAG 385 (545)
Q Consensus 325 ---~dg~I~vwd~~---~~~~~~~-~~~~h-----------~~~V~~l~~~p~~~~ll~s~s~d-g~I~lwd~~~~~~~~ 385 (545)
.+..|..||+. +++.... .+... ...+..++..++|+.++ +++.. +.|..++..... +.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~-~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKT-VS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCC-EE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCE-Ee
Confidence 26789999998 5554222 22111 13588999999986555 67767 778777776442 22
Q ss_pred EEe--c-----cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE--EEEec--CC---CCCEEEE-EEcCCCCEEEEE
Q 009059 386 VFK--C-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKLQ--GH---KNQVHSV-CWNTSGEYLASV 450 (545)
Q Consensus 386 ~~~--~-----~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~--~~~~~--~h---~~~I~~l-~~sp~g~~l~s~ 450 (545)
.+. . ....+.+++.|++..|++....|.|..+|+.+... +. +. +. -.....| ..-.+|+.|+++
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEE
Confidence 221 1 12367999999999999988899999999885432 21 11 21 1223343 333467775555
Q ss_pred e--CCcEEEEEcC
Q 009059 451 S--DELVRVWSIG 461 (545)
Q Consensus 451 s--dg~I~vwd~~ 461 (545)
. .+.+.+.+..
T Consensus 252 ~~~~~~~~l~S~D 264 (334)
T 2p9w_A 252 ARAPYAISFRSWD 264 (334)
T ss_dssp EETTEEEEEECSS
T ss_pred cCCCCEEEEECCC
Confidence 4 5555555443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.022 Score=56.74 Aligned_cols=247 Identities=9% Similarity=0.149 Sum_probs=151.7
Q ss_pred CCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 284 DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
+..|.|.|+.....+.+- -.-+ +.-.+|..+.||.-. ..++.|||+++... +..+.-. ..|.-=.|-.+. .
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~~-e~VvfWkWis~~-~ 118 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN-T 118 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEEEETT-E
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceecC-CCceEEEecCCC-e
Confidence 347888898875443221 1111 234678777777665 67999999998664 6666543 356666676442 3
Q ss_pred EEEEEcCCCcEEEEECCC-CceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEec
Q 009059 363 LLCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~-~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 429 (545)
+. ... +..|+.|++.. ..+++.|..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..++
T Consensus 119 l~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie 195 (494)
T 1bpo_A 119 VA-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 195 (494)
T ss_dssp EE-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEEC
T ss_pred EE-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhe
Confidence 33 332 67899999974 4566666543 34777788899888876552 4678899888664 23466
Q ss_pred CCCCCEEEEEEcCC---CCEEEEEeC----CcEEEEEcCCCC-----CcceEEEEe----eCCCceEEEEEcCCCCEEEE
Q 009059 430 GHKNQVHSVCWNTS---GEYLASVSD----ELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~h~~~I~~l~~sp~---g~~l~s~sd----g~I~vwd~~~~~-----~~~~i~~~~----~~~~~v~~~~~sp~~~~l~~ 493 (545)
+|......+.+..+ ..+++.+.. +.++|.++.... ..+....+. ....-..++..++....++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 66554444433211 124444442 589999986531 111111111 11344567889999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 494 IGCYETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
.+..|.|++||++++.++.. .-....|..-+-.....=++.....|.|
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 99999999999999998832 2334445444444443334444455544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.006 Score=59.02 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=131.4
Q ss_pred cCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEecc----C--cccEEEEEE---eCCCCcEEEEEc----
Q 009059 303 EHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----H--STTVMSLDF---HPSKEDLLCSCD---- 368 (545)
Q Consensus 303 ~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~----h--~~~V~~l~~---~p~~~~ll~s~s---- 368 (545)
...-.-.+++|.+....|+.++ ..++|..||...+......+.+ . ...+..|.| .|+ ..|+++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 3344456789988666666666 7899999999755432223322 1 114689999 577 45555433
Q ss_pred ---------CCCcEEEEECC---CCceeeEEecc--------------CCeeEEEEeCCCCEEEEEECC-CeEEEEECCC
Q 009059 369 ---------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDVET 421 (545)
Q Consensus 369 ---------~dg~I~lwd~~---~~~~~~~~~~~--------------~~v~~l~~sp~~~~l~~~~~d-g~I~i~d~~~ 421 (545)
.+..|..||+. +++.+...... .....++..++|+.+++.+.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 25779999999 78877666532 247899999999999999888 9999888875
Q ss_pred CEEEEE-ecC----CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-e---CCCceEEE-EEcCCCCE
Q 009059 422 QVCRLK-LQG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHSC-VFHPTFPS 490 (545)
Q Consensus 422 ~~~~~~-~~~----h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-~---~~~~v~~~-~~sp~~~~ 490 (545)
.....- +.. .....+.|++.|+|+.|++.. .+.|..+|+...... .+..-. + .......+ ..-.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEE
Confidence 532211 111 122367999999999988887 889999998843110 122110 1 11223333 34456776
Q ss_pred EEEEE-cCCeEEEEeCCCCeEE
Q 009059 491 LLVIG-CYETLELWNMTENKTL 511 (545)
Q Consensus 491 l~~~~-~dg~I~iwd~~~~~~~ 511 (545)
++++. ..+.+.+.+.+..+..
T Consensus 248 llV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 248 VLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEcCCCCEEEEECCCCccee
Confidence 45544 4556666666655444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0049 Score=61.01 Aligned_cols=224 Identities=12% Similarity=0.063 Sum_probs=122.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-eeeEe---ccCcccEEEEEEeCC---CCcEEEEEcCC-----CcE
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 373 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-~~~~~---~~h~~~V~~l~~~p~---~~~ll~s~s~d-----g~I 373 (545)
.....|+|.|+|+++++ ..+|.|.+++ ++.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34678999999985554 5679999998 3332 11111 122356899999998 55666554432 568
Q ss_pred EEEECCCCce-----e-eEEec----cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC--------
Q 009059 374 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 422 (545)
Q Consensus 374 ~lwd~~~~~~-----~-~~~~~----~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~-------- 422 (545)
..|+...+.. + ..+.. ......++|.|++..+++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888764421 1 11221 112468999999754444332 156666666531
Q ss_pred ------EEEEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcE------EEEEcCCCCC---------------cceEEEEe
Q 009059 423 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 473 (545)
Q Consensus 423 ------~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I------~vwd~~~~~~---------------~~~i~~~~ 473 (545)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 01111 122 2356789999 666665544 2231 2333333220 0112222
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCe-------EEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
........++| .++..+++.-..+.|...+++... ...+..-...+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12234556777 455544444444577777765432 112222346789999999998776654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.87 E-value=0.025 Score=64.81 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=146.3
Q ss_pred CCCeEEEEEcCC------CCEEEEEeC-CCcEEEEEcCCCeEEEEecc-CCccEEEEEEc--CCCCEEEEEeCCCeEEEE
Q 009059 263 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 332 (545)
Q Consensus 263 ~~~V~~l~~spd------g~~latg~~-dg~I~lwd~~~~~~~~~l~~-h~~~V~~l~~s--p~~~~l~t~s~dg~I~vw 332 (545)
.+.|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 469999997 99999999998776643221 11233334332 234588899999988666
Q ss_pred ECC--CCCeee--eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee-EEEEeCC--CCEE
Q 009059 333 DTE--NPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPR--LGRI 405 (545)
Q Consensus 333 d~~--~~~~~~--~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~-~l~~sp~--~~~l 405 (545)
.++ ++...- ..+.| ..++.-..+...+..-++.++ +....+|.-. ++....--....+. ...|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 554 333211 12333 345554445444444444444 3444444433 33221111112232 3334432 1234
Q ss_pred EEEECCCeEEEEECCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 009059 406 LAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------ 452 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d------------------------------ 452 (545)
+ +..++.++|..+... -.+.++. -...+..++++|..+.++.+. +
T Consensus 710 v-~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 A-LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp E-EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred E-EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 4 344556888876532 2333333 345778888888776554433 1
Q ss_pred -------------------CcEEEEEcCCCCCcceEEEEeeCC-CceEEEE---EcCC-CCEEEEEE----------cCC
Q 009059 453 -------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CYE 498 (545)
Q Consensus 453 -------------------g~I~vwd~~~~~~~~~i~~~~~~~-~~v~~~~---~sp~-~~~l~~~~----------~dg 498 (545)
..|++.|..+. ..+..+.-.. ..+.+++ |..+ ..+|++|+ ..|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 12445554433 3333333222 2234443 3332 46788776 246
Q ss_pred eEEEEeCCCCeEE--EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 499 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 499 ~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|++|++.+++.. ......+.|++|+-- .|++||.. ...|+||+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 8999999765544 233457889998743 35444433 36788874
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-05 Score=82.42 Aligned_cols=214 Identities=8% Similarity=0.016 Sum_probs=128.0
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC----CceeeEEe-ccCCeeEEEEe
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQ 399 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~----~~~~~~~~-~~~~v~~l~~s 399 (545)
..+.|++.++..... ...+ .....+..++|++.+..|+++-...+.|+.+++.. ......+. .......+++.
T Consensus 384 ~~~~I~~id~~~~~~-~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE-ECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc-eeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876543 2222 22345778999988777776666678899999875 22222221 11235678888
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCcceEEEEeeC
Q 009059 400 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 400 p~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--d-g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... ..+ +...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l--~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL--VTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEE--SCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEE--EeCC
Confidence 6656666554 468899999886654444433334567889998765555444 3 5788887754321 111 1122
Q ss_pred CCceEEEEEcCCCCEEEEEEcC-CeEEEEeCCCCeEEEecc---CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~---h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
-.....++|+|++..|+.+... +.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 3456789999987777777654 589999997654443332 2233456666543 344444445666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.011 Score=58.59 Aligned_cols=225 Identities=12% Similarity=0.061 Sum_probs=126.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCC---CCcEEEEEcC---C----Cc
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----SE 372 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~---~~~ll~s~s~---d----g~ 372 (545)
.....|+|.|++++ +++..+|.|++++.. +...+..+ .........|+|+|+ +..++++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45788999999974 445567999999743 33222221 122356889999997 5556544432 3 56
Q ss_pred EEEEECCCC--ce-----e-eEEec--cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 009059 373 IRYWSINNG--SC-----A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------- 422 (545)
Q Consensus 373 I~lwd~~~~--~~-----~-~~~~~--~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~------- 422 (545)
|..|+.... .. + ..+.. ......+.|.|++..+++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777777644 11 1 11221 113467999999765555332 246666665432
Q ss_pred --EEEEEecCCCCCEEEEEEcC-CCCEEEEEe--CC--cEEEEEcCCCCC---------------cceEEEEeeCCCceE
Q 009059 423 --VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKFH 480 (545)
Q Consensus 423 --~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s--dg--~I~vwd~~~~~~---------------~~~i~~~~~~~~~v~ 480 (545)
..+. ..++. ....++|+| +|.++++-. +. .|.+.. .+.. ...+..+........
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1122 12333 346899999 677666544 22 344332 2210 012222211234567
Q ss_pred EEEEc-------CCCCEEEEEEcCCeEEEEeCCCC-eEE---Eec-cCCCCeeEEEEeCCCCEEEEEe
Q 009059 481 SCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 481 ~~~~s-------p~~~~l~~~~~dg~I~iwd~~~~-~~~---~~~-~h~~~V~~l~~spd~~~las~s 536 (545)
.++|. .++.++++.-..+.|...++... +.. .+. .....+..+++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 78883 45655554445568888888753 232 222 2246789999999998777664
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0042 Score=61.29 Aligned_cols=177 Identities=7% Similarity=0.042 Sum_probs=102.5
Q ss_pred CCCeEEEEECCCCCeeee--Eecc-----CcccEEEEEEeC--CCC-cEEEEEcC--CCcEEEEECCCC--cee--eEEe
Q 009059 325 ADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLLCSCDN--NSEIRYWSINNG--SCA--GVFK 388 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~--~~~~-----h~~~V~~l~~~p--~~~-~ll~s~s~--dg~I~lwd~~~~--~~~--~~~~ 388 (545)
.+|.|.++|..+...... .+.+ .......|.+.+ ++. +++++-.. +..|.+|++... ... ..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999874322122 2222 234677888766 344 34444332 456777776543 222 2222
Q ss_pred c--cCCeeEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 389 C--QSGATQMRFQPRLGRILAAA-----------------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 389 ~--~~~v~~l~~sp~~~~l~~~~-----------------~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
. -...+.+.+.++|..+++.. ..|.|+.+|...-+. +...-...+.++|+||++.|+.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~---~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRV---VAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEE---EEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEE---eecCCcccCcceECCCCCEEEE
Confidence 2 12478999999966555433 125677777642222 2222346789999999998888
Q ss_pred Ee--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcC-CCCEEEEEEcCC-eEEEEeC
Q 009059 450 VS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYE-TLELWNM 505 (545)
Q Consensus 450 ~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg-~I~iwd~ 505 (545)
+. .+.|..|++...........+ ......-.+++.+ +|++.+++..++ .|..|+-
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 77 679999998743222222333 2356678899999 588666555343 3333443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0083 Score=59.37 Aligned_cols=231 Identities=9% Similarity=0.078 Sum_probs=126.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee--ee----EeccCcccEEEEEEeCC---CCcEEEEEcC-------
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN------- 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~--~~----~~~~h~~~V~~l~~~p~---~~~ll~s~s~------- 369 (545)
.....|+|.|+++.|+++...|.|++++.. +... +. .+.........|+|+|+ +..++++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 346889999999844455678999999854 2211 11 11122345789999996 4555545332
Q ss_pred CCcEEEEECCCC--ce--eeE-Eec-c------CCeeEEEEeCCCCEEEEEECC--------------CeEEEEECCCC-
Q 009059 370 NSEIRYWSINNG--SC--AGV-FKC-Q------SGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ- 422 (545)
Q Consensus 370 dg~I~lwd~~~~--~~--~~~-~~~-~------~~v~~l~~sp~~~~l~~~~~d--------------g~I~i~d~~~~- 422 (545)
...|..|++... .. ... +.. . .....+.|.|++ .|+++..+ |.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666533 11 111 111 1 124579999997 55555433 46777776532
Q ss_pred -------------EEEEEecCCCCCEEEEEEcC-CCCEEEEEe--CCcEEEEEcCCCCC---------------------
Q 009059 423 -------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK--------------------- 465 (545)
Q Consensus 423 -------------~~~~~~~~h~~~I~~l~~sp-~g~~l~s~s--dg~I~vwd~~~~~~--------------------- 465 (545)
..+.. .++ .....++|+| +|.++++-. ++.=.|.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 11111 223 3467899999 566555433 22222222222111
Q ss_pred -------cceEEEEeeCCCceEEEEEcC-------CCCEEEEEEcCCeEEEEeCCCCeEE---Eec-cCCCCeeEEEEeC
Q 009059 466 -------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAAST 527 (545)
Q Consensus 466 -------~~~i~~~~~~~~~v~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~sp 527 (545)
...+..+. +......+.|.. ++.++++.-..+.|...+++.++.. .+. .....+..|++.|
T Consensus 254 ~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 01112222 223566777764 3555555445668888888766544 222 2345799999999
Q ss_pred CCCEEEEEe-CCCcE
Q 009059 528 VNGMVASAS-HDKCV 541 (545)
Q Consensus 528 d~~~las~s-~Dg~I 541 (545)
||.++++.. .+|.|
T Consensus 333 dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 333 DGYLYVLTDESSGEL 347 (353)
T ss_dssp TSCEEEEECSTTEEE
T ss_pred CCcEEEEEeCCCCEE
Confidence 999666543 45544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.039 Score=54.10 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=128.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEe----ccCcccEEEEEEeCC---CCcEEEEE--cCCCcE
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DNNSEI 373 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~----~~h~~~V~~l~~~p~---~~~ll~s~--s~dg~I 373 (545)
.-...+.|+|.|+|.++++--..|.|++++...+... +..+ .........|+++|+ +..++++- ..+..|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3455789999999997777655899999987654431 2111 223466899999995 34444332 234556
Q ss_pred EEEECCCC----------ceee-EEec--cCCeeEEEEeCCCCEEEEEEC-------------CCeEEEEECCCC-----
Q 009059 374 RYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ----- 422 (545)
Q Consensus 374 ~lwd~~~~----------~~~~-~~~~--~~~v~~l~~sp~~~~l~~~~~-------------dg~I~i~d~~~~----- 422 (545)
.-|.+..+ +.+. .+.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66665542 1111 1111 123467999999866665442 355666665432
Q ss_pred ----EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC---------------cceEEEEeeCCCceEE
Q 009059 423 ----VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGNKFHS 481 (545)
Q Consensus 423 ----~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~---------------~~~i~~~~~~~~~v~~ 481 (545)
..+.. .+|. ....++|+|+|.++++-. ++.-.|.-+..+.. ...+..+..+......
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 11221 2443 346899999988776644 43233333333221 0112223222234566
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEeCCCCeE----E-EeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 482 CVFHPTFPSLLVIGCYETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~----~-~~~~h~~~V~~l~~spd~~~las~s 536 (545)
++|.. +..++..-..+.|....++.... . .+.+....+..|+..|||.++++.+
T Consensus 268 ~~~~~-g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYAE-GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEET-TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEEc-CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77763 44333333444676666655432 1 2334457899999999998766654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.089 Score=57.66 Aligned_cols=268 Identities=8% Similarity=0.060 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-cc----CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~----h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~ 337 (545)
...|.++....+|.+.+ |+.. -|..++..+.+..... .. ....|.++....++..|..|+. +-+..+|..+.
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35688898888887655 4444 5778887776543221 11 1234888888777776666664 45888888765
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--------ccCCeeEEEEeCCCCEEEEEE
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--------~~~~v~~l~~sp~~~~l~~~~ 409 (545)
.. ..........|.++....++. +. .|.. +-|.+++..++....... ....|.++....+ +.|.+|+
T Consensus 222 ~~-~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-g~lWiGT 296 (758)
T 3ott_A 222 QI-KQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE-HNIWLGT 296 (758)
T ss_dssp EE-EEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT-CCEEEEE
T ss_pred eE-EeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC-CCEEEEe
Confidence 43 111111234588888777764 33 3443 458889887655432211 1123777877776 4566677
Q ss_pred CCCeEEEEECCCCEEEEEec-----CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe-------eCCC
Q 009059 410 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 477 (545)
Q Consensus 410 ~dg~I~i~d~~~~~~~~~~~-----~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~-------~~~~ 477 (545)
..| +.++.....-...... .....|.++.-..+|.+.+...+ -+..++..++.... +..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCC
Confidence 666 5555432211111111 12346899998888887776544 46666654421111 11111 1234
Q ss_pred ceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec--c-----CCCCeeEEEEeCCCCEEEEEeCCCcEEEc
Q 009059 478 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 544 (545)
Q Consensus 478 ~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~--~-----h~~~V~~l~~spd~~~las~s~Dg~I~iW 544 (545)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.++
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 588888888887 56666 568999999888765332 1 224578888777765444 5554334443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0094 Score=59.00 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCeEEEEe-------ccCCccEEEEEEcCC---CCEEEEEeC--------
Q 009059 265 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA-------- 325 (545)
Q Consensus 265 ~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~~~~~l-------~~h~~~V~~l~~sp~---~~~l~t~s~-------- 325 (545)
....|+|.|+|+ +++ +...|.|++++.. +.....+ .........|+|+|+ +.+|+.+..
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 468899999998 554 5567999999853 3322111 122345789999996 455554432
Q ss_pred CCeEEEEECCCCC--e-eee-Eecc------CcccEEEEEEeCCCCcEEEEEcC-------------CCcEEEEECCCCc
Q 009059 326 DRTVRVWDTENPD--Y-SLR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS 382 (545)
Q Consensus 326 dg~I~vwd~~~~~--~-~~~-~~~~------h~~~V~~l~~~p~~~~ll~s~s~-------------dg~I~lwd~~~~~ 382 (545)
...|..|++.... . ..+ .+.. .......|.|.|++. |+++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356666664321 0 011 1111 111245799999984 4444332 2467777765320
Q ss_pred ------------eeeEEe-ccCCeeEEEEeCCCCEEEEEECCC----eEEEEECC--------C----------------
Q 009059 383 ------------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T---------------- 421 (545)
Q Consensus 383 ------------~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg----~I~i~d~~--------~---------------- 421 (545)
....+. .......++|+|..+.|+++.... .|.+.... .
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 122222 223478899999656777765432 23221100 0
Q ss_pred -----CEEEEEecCCCCCEEEEEEcC-------CCCEEEEEe-CCcEEEEEcCCCCCcceEEE--E-eeCCCceEEEEEc
Q 009059 422 -----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE--L-SCTGNKFHSCVFH 485 (545)
Q Consensus 422 -----~~~~~~~~~h~~~I~~l~~sp-------~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~--~-~~~~~~v~~~~~s 485 (545)
..++..+. +...+..+.|.. +|.++++.. .+.|...++..+ ..+.. + ......+..+++.
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---KVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---EEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---eEeeeEEcccCCCCceeEEEEC
Confidence 01112222 234567788864 466666555 668888888754 22222 2 1224578999999
Q ss_pred CCCCEEEE
Q 009059 486 PTFPSLLV 493 (545)
Q Consensus 486 p~~~~l~~ 493 (545)
|+|..+++
T Consensus 332 pdG~lyv~ 339 (353)
T 2g8s_A 332 PDGYLYVL 339 (353)
T ss_dssp TTSCEEEE
T ss_pred CCCcEEEE
Confidence 99984443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0051 Score=59.09 Aligned_cols=228 Identities=9% Similarity=0.060 Sum_probs=116.5
Q ss_pred CCCEEEEEe-CC-----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCC--
Q 009059 274 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 338 (545)
Q Consensus 274 dg~~latg~-~d-----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~-- 338 (545)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 4688899877653321 2111111222222 56677777754 368899988765
Q ss_pred -eeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 009059 339 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 -~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~ 409 (545)
.... .+.........+.+ + +.+++.|+.+ ..+.+||+.+.+....-..... -..+.. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3211 11111111222222 3 4566666543 3688999987765443332222 112222 2445556665
Q ss_pred CC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCC
Q 009059 410 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 476 (545)
Q Consensus 410 ~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~ 476 (545)
.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 43 4699999988754332 2111112222332 566666665 3 368999987652 11221111111
Q ss_pred CceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEE
Q 009059 477 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 512 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~ 512 (545)
.....+.+ +++.++.|+.+ ..+.+||+.+++...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 56666666655 368899998876553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.072 Score=52.20 Aligned_cols=236 Identities=9% Similarity=0.071 Sum_probs=124.1
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEe----ccCCccEEEEEEcCC---CCEEEEE---e
Q 009059 257 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS---S 324 (545)
Q Consensus 257 ~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l----~~h~~~V~~l~~sp~---~~~l~t~---s 324 (545)
..+-..-...+.++|.|||+++++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|+.. .
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 334444456789999999998877655899999986655432 222 223566899999995 3445443 2
Q ss_pred CCCeEEEEECCCC----------CeeeeEec-cCcccEEEEEEeCCCCcEEEEEc------------CCCcEEEEECCCC
Q 009059 325 ADRTVRVWDTENP----------DYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNG 381 (545)
Q Consensus 325 ~dg~I~vwd~~~~----------~~~~~~~~-~h~~~V~~l~~~p~~~~ll~s~s------------~dg~I~lwd~~~~ 381 (545)
.++.|.-|.+... +..+..+. ........|.|.|++..++.+|+ ..|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456666665541 11111221 11123457999999854443332 1355555555422
Q ss_pred c-------eeeEEe-ccCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCE------------------EEEEecCCCC
Q 009059 382 S-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHKN 433 (545)
Q Consensus 382 ~-------~~~~~~-~~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~------------------~~~~~~~h~~ 433 (545)
- ....+. .......++|+|+ +.|+++.. ++.-.|.-+..+. ++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 0 011222 2234678999997 45555543 2212222111111 1222222223
Q ss_pred CEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-cceEEEEeeCCCceEEEEEcCCCCEEEEE
Q 009059 434 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 434 ~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~-~~~i~~~~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
....++|. +|.+++..- .+.|....+..... ......+......+..++..|+|..+++.
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 55677776 455555544 45666666654321 11122233334678888888888644443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.019 Score=55.20 Aligned_cols=225 Identities=8% Similarity=0.018 Sum_probs=115.1
Q ss_pred CEEEEEeC--CCcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCeeee-Eecc
Q 009059 276 KLLATGGH--DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLR-TFTG 346 (545)
Q Consensus 276 ~~latg~~--dg~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~~~~~~-~~~~ 346 (545)
.+++.|+. ...+.+||..+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+...... .+..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 3578899988755332 12111112222222 56677777754 5788899887654221 1111
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC--------
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-------- 410 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~-------- 410 (545)
.......+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -..+.. .++..++.|+.
T Consensus 91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCE
T ss_pred cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccc
Confidence 1111122222 2 4566666654 4688999988764433222111 112222 24445555543
Q ss_pred -CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceEE
Q 009059 411 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 481 (545)
Q Consensus 411 -dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~ 481 (545)
-..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+.........
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeE
Confidence 34589999988754332 1111112222222 566666665 3 368899987642 1111111111112222
Q ss_pred EEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEE
Q 009059 482 CVFHPTFPSLLVIGCY-----ETLELWNMTENKTL 511 (545)
Q Consensus 482 ~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~ 511 (545)
+.+ ++..++.|+.+ ..+.+||+.+.+..
T Consensus 244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 333 56667777744 47899999887665
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.021 Score=58.60 Aligned_cols=258 Identities=11% Similarity=0.086 Sum_probs=148.9
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccC-------------------------CccEE--EEEEcC---CCCEEEEEeC-C
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFSP---SLSRLATSSA-D 326 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h-------------------------~~~V~--~l~~sp---~~~~l~t~s~-d 326 (545)
+.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+.. ||+||+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678889999999999999888776310 01111 123321 5777877664 5
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEe--CCCCcEEEEEc------CCCcE------------EEEECCCCceeeE
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 386 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~ll~s~s------~dg~I------------~lwd~~~~~~~~~ 386 (545)
..|...+++..+.....-......+..+.|- |+.+++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777788877654222223355667778775 66666664441 23321 1123333333333
Q ss_pred EeccCCeeEEEEeCCCCEEEEEECCC---------------eEEEEECCC-------CE-------EEEEecC-------
Q 009059 387 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------QV-------CRLKLQG------- 430 (545)
Q Consensus 387 ~~~~~~v~~l~~sp~~~~l~~~~~dg---------------~I~i~d~~~-------~~-------~~~~~~~------- 430 (545)
+........+...+++++.++.+.+. .+.+|++.. ++ -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 33344445556677777777666422 255555320 00 0111111
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC---------CCcceEEEEeeCCCceEEEEEcCCCCEE
Q 009059 431 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 491 (545)
Q Consensus 431 --------h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~---------~~~~~i~~~~~~~~~v~~~~~sp~~~~l 491 (545)
-......+.++|||+++++++ +.++.|+|++.. ....++......+-.....+|.++|...
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY 392 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY 392 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence 123446788999999999988 779999999742 1112222222345667788999999544
Q ss_pred EEEEcCCeEEEEeCCCC----------eEE-EeccCCCCeeEEE------EeCCCCEEEEEe
Q 009059 492 LVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSLA------ASTVNGMVASAS 536 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l~------~spd~~~las~s 536 (545)
.+.--|..|..|++... ..+ .+.-|-. +-.+. -.+||++|++..
T Consensus 393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 44457889999998643 233 3333332 22332 257888888875
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.074 Score=52.33 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=116.7
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCcEEEEEcCC--CeEE-EEecc-----CCccEEEEEEcC--CCC-EEE
Q 009059 265 KVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA 321 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~------------~dg~I~lwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--~~~-~l~ 321 (545)
....+++.|+|..+++++ .+|.|.++|..+ .+.. ..+.+ ..-....|.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 344567788875555542 689999999873 2221 12222 234677777765 354 455
Q ss_pred EEe-C--CCeEEEEECCCCCee---eeEeccC-cccEEEEEEeCCCCcEEEEEc-----------------CCCcEEEEE
Q 009059 322 TSS-A--DRTVRVWDTENPDYS---LRTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS 377 (545)
Q Consensus 322 t~s-~--dg~I~vwd~~~~~~~---~~~~~~h-~~~V~~l~~~p~~~~ll~s~s-----------------~dg~I~lwd 377 (545)
.+. . +.+|.+|+++..... +..+.+. -...+.+.+.++|. ++++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 543 2 467888887654321 2233322 24578999999874 444543 124555565
Q ss_pred CCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCC-CE--EEEEecCCCCCEEEEEEcC-CCCEEEEEe-
Q 009059 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS- 451 (545)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~-~~--~~~~~~~h~~~I~~l~~sp-~g~~l~s~s- 451 (545)
. +++......-...+.++|+|+++.++++.. .+.|+.|++.. +. ....+ ...+..-.+++.+ +|.+.+++.
T Consensus 210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 5 333333333456789999999988888775 78999999863 32 22333 2346678899999 599888765
Q ss_pred CC-cEEEEEcC
Q 009059 452 DE-LVRVWSIG 461 (545)
Q Consensus 452 dg-~I~vwd~~ 461 (545)
++ .|..|+..
T Consensus 287 ~g~~v~~~~P~ 297 (355)
T 3sre_A 287 NGMRIFFYDAE 297 (355)
T ss_dssp CHHHHHSCCTT
T ss_pred CceEEEEECCC
Confidence 54 55555544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.012 Score=56.60 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=113.6
Q ss_pred CCEEEEEeCC----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCeeeeE
Q 009059 275 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 343 (545)
Q Consensus 275 g~~latg~~d----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~d-----g~I~vwd~~~~~~~~~~ 343 (545)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455566543 4678888877653322 1111111112222 56677777654 35888998876542211
Q ss_pred -eccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC-----
Q 009059 344 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI----- 410 (545)
Q Consensus 344 -~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~----- 410 (545)
+.........+.+ + +.+++.|+.++ .+.+||+.+.+....-..... -..++. .++..++.|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR 169 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence 1111111122222 2 35665665443 578899887664443222211 112222 24445555543
Q ss_pred --CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 411 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 411 --dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
-..+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+..+.......
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~- 245 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNA- 245 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSC-
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCccccC-
Confidence 24589999988754332 2211112222222 566666665 3 268899987642 11121111111111
Q ss_pred EEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEe
Q 009059 481 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 513 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 513 (545)
.++. -++..++.|+.++ .+.+||+.+++...+
T Consensus 246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 2222 2566667776553 589999998876654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.14 Score=51.04 Aligned_cols=234 Identities=13% Similarity=0.176 Sum_probs=154.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 347 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h 347 (545)
+.-.+|..+.||.=. ...+.|+|+++...+..+.-.+ .|.-=.|-.+ +.|+-. .+..|.-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence 345677777777765 6799999999988887766443 4656666543 355555 35679999998766677777766
Q ss_pred c----ccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCeeE-EEEeCCC----CEEEEEEC--
Q 009059 348 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILAAAI-- 410 (545)
Q Consensus 348 ~----~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v~~-l~~sp~~----~~l~~~~~-- 410 (545)
. ..|.....+++.+.++++|- -.|.+.+|..+.+... .++. ...+ ..+-.++ ..+++-..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ-~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE-EECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc-hhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777888899888887663 2467889988754322 2221 1111 1121121 12333222
Q ss_pred --CCeEEEEECCCC---------EEEEEec---CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 411 --ENYISILDVETQ---------VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 411 --dg~I~i~d~~~~---------~~~~~~~---~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
.+.++|.++... +.+..+- ...+...++..++.-.+++..+ -|.|.+||+.++ .++..-...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 378999998532 1111111 1245667888888877777777 889999999998 788877777
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
...|...+.+....-+++....|.|.-..+++...+
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 788877777766666777778887776666655443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.011 Score=56.69 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=105.7
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCc-
Q 009059 316 SLSRLATSS-AD-----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 382 (545)
Q Consensus 316 ~~~~l~t~s-~d-----g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~- 382 (545)
++.+++.|+ .+ ..+.+||..+...... .+....... +++.. + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVSL-H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEEE-C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 3688888877653211 111111111 22222 2 4566676644 468999998766
Q ss_pred --eeeEEeccCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 383 --CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 383 --~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
....-..... -..+... ++..++.|+.+ ..+.+||+.+.+-.. .+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 3332221111 1222222 44555555543 468999998765332 22222222222222 566666665
Q ss_pred -C-----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC-CC
Q 009059 452 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL 519 (545)
Q Consensus 452 -d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~-~~ 519 (545)
+ ..+.+||+.+.. ...+..+...... .+++. -++..++.|+.+ ..+.+||+.+.+...+.... ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKRSG-AGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCccccc-ceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 368899987652 1112111111111 12222 255666666654 47999999988776443211 11
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 009059 520 VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg 539 (545)
....+..-++++++.|+.++
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred cceeEEEECCEEEEEcCcCC
Confidence 11112223677777777653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.035 Score=53.64 Aligned_cols=225 Identities=8% Similarity=0.001 Sum_probs=113.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC-----C------CeEEEEECCCCCeeeeEe
Q 009059 277 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~-----d------g~I~vwd~~~~~~~~~~~ 344 (545)
+++.|+ ..+.+||..+.+-.. .+..............++.+++.|+. . ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 578999988866432 22222122233333457788888873 1 1377888887653 221
Q ss_pred ccCccc--EEEEEEeCCCCcEEEEEcCC--------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC-C
Q 009059 345 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-E 411 (545)
Q Consensus 345 ~~h~~~--V~~l~~~p~~~~ll~s~s~d--------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~-d 411 (545)
..-..+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..+.. -.+++. .++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence 111111 1122222 34566666632 4588999987654332222111 122222 34455566655 2
Q ss_pred -----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 412 -----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 412 -----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
..+.+||+.+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+..+......
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~ 236 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS 236 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc
Confidence 4799999988743321 1111112222222 566666666 43 58888987641 1122111111111
Q ss_pred eEEEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEe
Q 009059 479 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 513 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 513 (545)
.+++. -+++.++.|+.+ ..+.+||+.+.+...+
T Consensus 237 -~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 237 -LSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp -CEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred -eeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 12222 255666666653 2578999988876644
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.022 Score=56.83 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=89.2
Q ss_pred CCeEEEEECCCCEEEEEecCC----CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCc---------ceEEEEee---
Q 009059 411 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC--- 474 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h----~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~---------~~i~~~~~--- 474 (545)
++.|+.-++......+.+... -..|..+..+|+|.+||..++..|.|..+..+... .....+..
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 466666666533223333322 23678899999999999999999999999843210 11223332
Q ss_pred ---CCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCe--EEEe---------ccCCCCeeEEEEeCCCCEEEEEe-
Q 009059 475 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TLTL---------SAHDKLVSSLAASTVNGMVASAS- 536 (545)
Q Consensus 475 ---~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~--~~~~---------~~h~~~V~~l~~spd~~~las~s- 536 (545)
...+|..+.|||-+ ..|++-..|+.|++||+.... +..+ ......|.+++|..++-.|...+
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 24679999999965 579999999999999997522 1111 12336788999999776555544
Q ss_pred -CCCcEE
Q 009059 537 -HDKCVK 542 (545)
Q Consensus 537 -~Dg~I~ 542 (545)
..|.|+
T Consensus 200 t~~GDIY 206 (452)
T 3pbp_A 200 TEGGDIF 206 (452)
T ss_dssp TTSCEEE
T ss_pred CCCCCEE
Confidence 777775
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.029 Score=53.88 Aligned_cols=210 Identities=10% Similarity=0.032 Sum_probs=105.8
Q ss_pred CEEEEEeC--CCeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC----CcEEEEECCCCceeeEEecc
Q 009059 318 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 390 (545)
Q Consensus 318 ~~l~t~s~--dg~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d----g~I~lwd~~~~~~~~~~~~~ 390 (545)
.+++.|+. ...+.+||..+.+.... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35788899887654211 11111111222222 24566677644 57889999887654433222
Q ss_pred CC--eeEEEEeCCCCEEEEEECC------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-------
Q 009059 391 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------- 452 (545)
Q Consensus 391 ~~--v~~l~~sp~~~~l~~~~~d------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d------- 452 (545)
.. -..++. -++..++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+ +
T Consensus 90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 22 112222 244556666654 4699999988754332 1111112222222 566666665 2
Q ss_pred --CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCC---CCeeE
Q 009059 453 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSS 522 (545)
Q Consensus 453 --g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~---~~V~~ 522 (545)
..+.+||+.+.. ...+..+..... -.+++.. +++.++.|+.+ ..+.+||+.+++...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATET-WTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCe-EEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 348899987752 111211111111 1222222 55666666543 36899999988766443211 11222
Q ss_pred EEEeCCCCEEEEEeCC
Q 009059 523 LAASTVNGMVASASHD 538 (545)
Q Consensus 523 l~~spd~~~las~s~D 538 (545)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 222 67788888755
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.022 Score=54.90 Aligned_cols=231 Identities=7% Similarity=0.003 Sum_probs=115.4
Q ss_pred cCCCCEEEEEeCC----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeC----C-----CeEEEEECCC
Q 009059 272 SPDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTEN 336 (545)
Q Consensus 272 spdg~~latg~~d----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~----d-----g~I~vwd~~~ 336 (545)
.-++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+. + ..+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3356677777642 4688899877553322 1111111122222 5667777665 2 3588889887
Q ss_pred CCeeee-EeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEE
Q 009059 337 PDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAA 408 (545)
Q Consensus 337 ~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~ 408 (545)
...... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-..... -..++.. ++..++.|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEe
Confidence 653211 11111111222222 3 4566566533 3688899987654433222111 1122222 44555565
Q ss_pred ECC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeC
Q 009059 409 AIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 409 ~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+...
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 252 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR 252 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC
Confidence 543 4689999987754321 1111112223333 566666665 3 368999987642 1111111111
Q ss_pred CCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEe
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 513 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~ 513 (545)
... .+++. -+++.++.|+.+ ..+.+||+.+.+...+
T Consensus 253 r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSA-LGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccc-eEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 111 12222 256666666644 3788999988876543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.26 Score=50.27 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=61.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee-eeEecc------CcccEEEEEEeCC---CCcEEEEEcC------
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~-~~~~~~------h~~~V~~l~~~p~---~~~ll~s~s~------ 369 (545)
...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987776544457888876544432 222221 2456789999995 5556555432
Q ss_pred ------CCcEEEEECCCC--c-----eee-EEec--cCCeeEEEEeCCCCEEEEEE
Q 009059 370 ------NSEIRYWSINNG--S-----CAG-VFKC--QSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 370 ------dg~I~lwd~~~~--~-----~~~-~~~~--~~~v~~l~~sp~~~~l~~~~ 409 (545)
...|.-|++... . .+. .+.. ......+.|.|++..+++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555655322 1 111 1111 13368899999987666654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.13 Score=49.44 Aligned_cols=233 Identities=5% Similarity=-0.074 Sum_probs=132.5
Q ss_pred CCCCEEEEEe--CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC--------------CeEEEEECCC
Q 009059 273 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 336 (545)
Q Consensus 273 pdg~~latg~--~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d--------------g~I~vwd~~~ 336 (545)
.++.+|+... .++.|...+.+... ...+... .+--+++++.+|+.+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4667776664 24566666654433 3333221 123457788888877543 4677777775
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEE---cCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~---s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg 412 (545)
... ..+... . +..|+++++.++++- ..+..|+..++........... .+ ..++++++.|+.... ..
T Consensus 98 ~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC
T ss_pred Ccc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc
Confidence 542 223222 1 225677777777665 3455677777764443333322 22 456778888887765 67
Q ss_pred eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-C-C-cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 413 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-d-g-~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
.|++.++..+.....+.+ ... ..+.|++.+|+-.. + + .|..-++..... . .+. ...+ ..|+|++.
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~---~Lt--~~~~--~~~~~~g~ 235 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V---VLT--EANI--EHYNVYGS 235 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E---ECS--CSCE--EEEEEETT
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E---EEe--CCCc--ceEEECCC
Confidence 899999987765544432 222 34568998888776 3 2 566666655432 1 111 2223 34788888
Q ss_pred EEEEEEc--CCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 490 SLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 490 ~l~~~~~--dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s 536 (545)
+|+.+.. .+.|..-++.......+... .+.+ +++.+.+|+-..
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~--i~i~~d~Iy~td 280 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCN--INVTSQYVYFTD 280 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSCCCEEEEES--CEEE--EEECSSEEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCCccEEeeCC--ccce--EEEeCCEEEEEE
Confidence 8877643 35788888877654433322 2333 334455555444
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.16 Score=48.99 Aligned_cols=226 Identities=8% Similarity=-0.002 Sum_probs=109.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCCeeee-E
Q 009059 277 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLR-T 343 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~----dg-------~I~vwd~~~~~~~~~-~ 343 (545)
+++.|+. .+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+...... .
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47888988766433 12211112222333456778888873 12 277788876553211 1
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCC-------CcEEEEECCCCceeeEEeccCCe--eEEEEeCCCCEEEEEEC----
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAI---- 410 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~~~~~v--~~l~~sp~~~~l~~~~~---- 410 (545)
+....... +++.. + +.+++.|+.+ ..+.+||+.+.+-...-...... .+++. .++..++.|+.
T Consensus 96 ~p~~r~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 96 LPSARCLF-GLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp BSSCBCSC-EEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCcccccc-ceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 11111111 22222 2 4566566543 25888998876644332222221 12222 34455555553
Q ss_pred --CCeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCcceEEEEeeCCCceE
Q 009059 411 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH 480 (545)
Q Consensus 411 --dg~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~ 480 (545)
-..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+...... .
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~ 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-I 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-C
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-e
Confidence 24699999988753332 2111112222222 566666665 2 257788987652 1111111111111 1
Q ss_pred EEEEcCCCCEEEEEEcC--------------CeEEEEeCCCCeEEEe
Q 009059 481 SCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 513 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~ 513 (545)
+++. -++..++.|+.+ ..+.+||+.+.+...+
T Consensus 248 ~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 2222 245666666543 3688999988876644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.091 Score=50.18 Aligned_cols=183 Identities=9% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCeEEEE--eccCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCeee
Q 009059 274 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENPDYSL 341 (545)
Q Consensus 274 dg~~latg~~d-----g~I~lwd~~~~~~~~~--l~~h~~~V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~~~~~ 341 (545)
++++++.|+.+ ..+.+||..+.+-... +......-..+.+ ++++++.|+.++ .+.+||+.+.....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777754 3588899877553322 2211112222223 567777777653 57788888765422
Q ss_pred eEeccCcccEEEEEEeCCCCcEEEEEcCC-------CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEECC-
Q 009059 342 RTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 411 (545)
Q Consensus 342 ~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-------g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d- 411 (545)
..-......-.+++.. + ..+++.|+.+ ..+.+||+.+.+....-..... -..+... ++..++.|+.+
T Consensus 139 ~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~ 215 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV-G-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDG 215 (302)
T ss_dssp ECCCSSCCBSCEEEEE-T-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSS
T ss_pred cCCCCCcccCceEEEE-C-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCC
Confidence 1111111111122222 2 4566566532 3588999987764443222111 1222222 44556666553
Q ss_pred ----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCC
Q 009059 412 ----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSG 463 (545)
Q Consensus 412 ----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~ 463 (545)
..+.+||+++.+-... +.........+.+ ++++++.|+ ++ .+.+||+.+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 4799999988754332 1111111122222 566666665 43 4888888764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.27 Score=47.16 Aligned_cols=176 Identities=7% Similarity=0.009 Sum_probs=106.9
Q ss_pred EEEcCCCCEEEEEeCC--------------CcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe--C--CCeEE
Q 009059 269 CHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTVR 330 (545)
Q Consensus 269 l~~spdg~~latg~~d--------------g~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s--~--dg~I~ 330 (545)
--++++|++|+.+... ..|+..+++..+...... .. +..|++++++|+-.. . +..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 4457788888877543 357777777655333222 11 236777888888776 3 34555
Q ss_pred EEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC
Q 009059 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 331 vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..++.... ...+..+.. ..|+++++.++++......|.+.++..+.....+. ... ...+.|++++|+....
T Consensus 133 ~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 133 RIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEEG
T ss_pred EEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEEc
Confidence 55665332 344444432 45677888888776656789999988766544433 333 2346688899888765
Q ss_pred C--CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCC
Q 009059 411 E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 463 (545)
Q Consensus 411 d--g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~ 463 (545)
. ..|..-++..... ..+. ...+ ..|+|++.+|..+. .+.|..-++...
T Consensus 204 ~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 204 NRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4 3677777776542 2332 2334 34778888887664 236666666543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.13 Score=49.57 Aligned_cols=210 Identities=9% Similarity=0.007 Sum_probs=103.2
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC-----C------CcEEEEECCCCceeeEE
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 387 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~-----d------g~I~lwd~~~~~~~~~~ 387 (545)
+++.|+ ..+.+||..+.+.....+..............+ +.+++.|+. . ..+..||+.+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 568999998877543222211112222222334 345556652 1 12778898877643322
Q ss_pred eccCCe--eEEEEeCCCCEEEEEECC--------CeEEEEECCCCEEEE--EecCCCCCEEEEEEcCCCCEEEEEeC---
Q 009059 388 KCQSGA--TQMRFQPRLGRILAAAIE--------NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVSD--- 452 (545)
Q Consensus 388 ~~~~~v--~~l~~sp~~~~l~~~~~d--------g~I~i~d~~~~~~~~--~~~~h~~~I~~l~~sp~g~~l~s~sd--- 452 (545)
...... ..++.. ++..++.|+.+ ..+.+||..+.+-.. .+.........+. -++++++.|+.
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence 222211 122222 44455555532 469999998875332 1111111112222 35566666652
Q ss_pred ----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEEeccCC--CCee
Q 009059 453 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD--KLVS 521 (545)
Q Consensus 453 ----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~--~~V~ 521 (545)
..+.+||+.+.. ...+..+..... -.+++. -+++.++.|+.++ .+.+||+.+.+...+.... ..-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368899987642 111111111111 112222 2566677777654 6899999988776543211 1111
Q ss_pred EEEEeCCCCEEEEEeCC
Q 009059 522 SLAASTVNGMVASASHD 538 (545)
Q Consensus 522 ~l~~spd~~~las~s~D 538 (545)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.042 Score=54.04 Aligned_cols=231 Identities=8% Similarity=-0.070 Sum_probs=112.3
Q ss_pred CCCEEEEEeCC-CcEEEEEcCC--C--eEEEEec-cCCccEEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 009059 274 DGKLLATGGHD-KKAVLWCTES--F--TVKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~~d-g~I~lwd~~~--~--~~~~~l~-~h~~~V~~l~~sp~~~~l~t~s~-d---------g~I~vwd~~~~ 337 (545)
++++++.|+.+ ..+.+||..+ . +.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777643 5688888863 2 2222222 11111222223 5667777765 2 36888998876
Q ss_pred CeeeeEecc-CcccEEEEEEeCCCCcEEEEEcCC---------------------------------------CcEEEEE
Q 009059 338 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 377 (545)
Q Consensus 338 ~~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s~d---------------------------------------g~I~lwd 377 (545)
......... ....-.++.. .+ ..+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542211111 1111112222 23 4566677644 4789999
Q ss_pred CCCCceeeEEeccC--Ce-eEEEEeCCCCEEEEEEC------CCeEEEEEC--CCCEEEE--EecCCCCCEEEEEEcCCC
Q 009059 378 INNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 444 (545)
Q Consensus 378 ~~~~~~~~~~~~~~--~v-~~l~~sp~~~~l~~~~~------dg~I~i~d~--~~~~~~~--~~~~h~~~I~~l~~sp~g 444 (545)
+.+.+....-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-.. .+..........+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 98876554433222 12 233333 4355555543 346788887 4433221 111111111111122356
Q ss_pred CEEEEEe-C----------------------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---
Q 009059 445 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 498 (545)
Q Consensus 445 ~~l~s~s-d----------------------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg--- 498 (545)
++++.|+ + ..+.+||+.+.. ...+..+........ ++..+++.++.|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGV--SLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSE--EEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccce--eEEeCCEEEEEeeeCCCCC
Confidence 6666665 2 257889987653 233333332222222 2334677778888653
Q ss_pred ---eEEEEeCCCCeEEE
Q 009059 499 ---TLELWNMTENKTLT 512 (545)
Q Consensus 499 ---~I~iwd~~~~~~~~ 512 (545)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57777999888774
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.13 Score=51.20 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=93.2
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-----CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE--------
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV-------- 423 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-------- 423 (545)
..++..+++.- ++.||.-++......+.+... ..+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence 34455555333 578888888755545555544 257889999997666555 56688888887321
Q ss_pred ----EEEEecC------CCCCEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEe---------eCCCceE
Q 009059 424 ----CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELS---------CTGNKFH 480 (545)
Q Consensus 424 ----~~~~~~~------h~~~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~---------~~~~~v~ 480 (545)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... ... .++ .....|.
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCE-EESCCCSEEESCSSCCCEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCc-chhccccccCCCcccceEE
Confidence 1122221 25689999999954 4555555 99999999987322 222 222 2236788
Q ss_pred EEEEcCCCCEEEEEE--cCCeEEEE
Q 009059 481 SCVFHPTFPSLLVIG--CYETLELW 503 (545)
Q Consensus 481 ~~~~sp~~~~l~~~~--~dg~I~iw 503 (545)
+++|..++-.|++.. ..|.|+-.
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999988888866 77877643
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.039 Score=53.84 Aligned_cols=191 Identities=6% Similarity=-0.016 Sum_probs=103.2
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccC-cccEEEEEE--eCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCe
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 393 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~--~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v 393 (545)
.+++.++.||.|.-+|..+++. +..+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+....-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999998875 4444322 122222110 01122444343 57999999999988665544432211
Q ss_pred e--EEEEe-----------CCCCEEEEEECCCeEEEEECCCCEEEEEecCCC--CC-----EEEEEEc-----CCCCEEE
Q 009059 394 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 448 (545)
Q Consensus 394 ~--~l~~s-----------p~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--~~-----I~~l~~s-----p~g~~l~ 448 (545)
. -+... ..++.+++++.+|.++..|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 01111 145788999999999999999999999886431 10 1112111 1234555
Q ss_pred EEe-CCcEEEEEcCCCCCcce-EEEEeeCCCc--e-EEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 449 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 449 s~s-dg~I~vwd~~~~~~~~~-i~~~~~~~~~--v-~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
.+. +..+.+.+ +++..... .......... + ..-..+.++.+ ++++.||.|+.+|..+++.+
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 555 66666665 33321111 1111111000 0 00001123554 55788888888888777765
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.079 Score=47.87 Aligned_cols=172 Identities=14% Similarity=0.021 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCcEEEEECCCCc------eeeEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE------EE
Q 009059 361 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 426 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~------~~~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~------~~ 426 (545)
+.+|+...+| +++.=....+. ....+.. -..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566666 66665555443 1122222 14678999999755 5555 888888888755111 11
Q ss_pred Eec--CCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcce----EEEEeeCCCceEEEEEcCCCCEEEEEEcCCeE
Q 009059 427 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 500 (545)
Q Consensus 427 ~~~--~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~----i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I 500 (545)
.+- +-. .-.++.|.|+|.+.++ +||.|+-++-.+.....- ...-...-..+..+.|.|+|. |+++. ++.+
T Consensus 81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQF 156 (236)
T ss_dssp EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEE
T ss_pred Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcE
Confidence 111 111 1468899999998888 889888777533221111 111111225689999999998 45555 8876
Q ss_pred EEEeCCCCeE------EEec--cCCCCeeEEEEeCCCCEEEEEeCCCcE
Q 009059 501 ELWNMTENKT------LTLS--AHDKLVSSLAASTVNGMVASASHDKCV 541 (545)
Q Consensus 501 ~iwd~~~~~~------~~~~--~h~~~V~~l~~spd~~~las~s~Dg~I 541 (545)
+-+....... .... ..-..-..+.|.+++.+.++. +|.+
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 5443332210 0111 222334456788988877666 6654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.12 Score=59.07 Aligned_cols=218 Identities=10% Similarity=0.172 Sum_probs=130.4
Q ss_pred CCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcE
Q 009059 284 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 363 (545)
Q Consensus 284 dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~l 363 (545)
...|.|.|+.....+.+-.- .--+.-.+|..+.||.-. ..++.|||+++... +..+.- ...|.-=.|-... .+
T Consensus 47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~-~l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV 119 (1630)
T ss_pred CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCC-ee
Confidence 34788888877554422110 111234577777666654 67999999997654 555543 3456666776543 23
Q ss_pred EEEEcCCCcEEEEECCC-CceeeEEec-----cCCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEecC
Q 009059 364 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 430 (545)
Q Consensus 364 l~s~s~dg~I~lwd~~~-~~~~~~~~~-----~~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~~ 430 (545)
.+++ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+.. ..+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhH
Confidence 3233 66899999974 344444432 234677778888888776552 47888888875532 23455
Q ss_pred CCCCEEEEEEc---CCCCEEEEEe----CCcEEEEEcCCCCC-----c-ceEEEEe---eCCCceEEEEEcCCCCEEEEE
Q 009059 431 HKNQVHSVCWN---TSGEYLASVS----DELVRVWSIGSGSK-----G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 431 h~~~I~~l~~s---p~g~~l~s~s----dg~I~vwd~~~~~~-----~-~~i~~~~---~~~~~v~~~~~sp~~~~l~~~ 494 (545)
|.+....+... +...+++.+. .+.++|.++..... . ..+..+- ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 54443333321 1122333333 25888988865300 0 0111111 112334567888888999999
Q ss_pred EcCCeEEEEeCCCCeEE
Q 009059 495 GCYETLELWNMTENKTL 511 (545)
Q Consensus 495 ~~dg~I~iwd~~~~~~~ 511 (545)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999877
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.088 Score=50.58 Aligned_cols=214 Identities=7% Similarity=-0.014 Sum_probs=103.9
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCCeeee-EeccCcccEEEEEEeCCCCcEEEEEcC----C-----CcEEEEECCCC
Q 009059 316 SLSRLATSSAD----RTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNG 381 (545)
Q Consensus 316 ~~~~l~t~s~d----g~I~vwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~ll~s~s~----d-----g~I~lwd~~~~ 381 (545)
++.+++.|+.+ ..+.+||..+...... .+....... +++.. + +.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 44555555531 3578888876553211 111111111 22222 2 456666654 2 46888999876
Q ss_pred ceeeEEeccCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe-
Q 009059 382 SCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 382 ~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
+....-..... -..++.. ++..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred eEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 54432221111 1122222 44555555532 4689999988754332 1111112222333 566666665
Q ss_pred C-----CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCCC--C
Q 009059 452 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--L 519 (545)
Q Consensus 452 d-----g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~--~ 519 (545)
+ ..+.+||+.+..- ..+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+...+..... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 254 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS 254 (308)
T ss_dssp CSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB
T ss_pred CCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc
Confidence 3 3688999876421 111111111111222222 56666666654 479999999887764432111 1
Q ss_pred eeEEEEeCCCCEEEEEeCCC
Q 009059 520 VSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 520 V~~l~~spd~~~las~s~Dg 539 (545)
-.+++. -++++++.|+.++
T Consensus 255 ~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 255 ALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp SCEEEE-ETTEEEEECCBCS
T ss_pred ceEEEE-ECCEEEEEcCcCC
Confidence 112222 2567777777553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.12 Score=59.10 Aligned_cols=235 Identities=12% Similarity=0.168 Sum_probs=140.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC-
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 347 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h- 347 (545)
.-.+|..+.||.-. ..++.|+|+++...+..+.- ...|.-=.|-.+. .|+-.+ +..|..|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34567777777654 67999999998777666543 3456666775443 444442 4579999998655566666655
Q ss_pred ---cccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccC-CeeEEEE--eCCCCEEEEEEC----C
Q 009059 348 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 411 (545)
Q Consensus 348 ---~~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~-~v~~l~~--sp~~~~l~~~~~----d 411 (545)
...|.....+++.+.++++|= -.|.+.+|.++.+.... +..+. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~-iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh-hhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888887663 35788889887543211 11110 0111111 111122333222 3
Q ss_pred CeEEEEECCCC---EE------EEEecC---CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCc
Q 009059 412 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 478 (545)
Q Consensus 412 g~I~i~d~~~~---~~------~~~~~~---h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~ 478 (545)
+.++|.++... .. +..+.. ..+...++..++.-.++...+ -|.|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888888542 11 111111 133455677777666666666 889999999998 566655555666
Q ss_pred eEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 479 v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
|...+.+....-+++....|.|.-..+++...+
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 666655554444666667777766666665554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.99 Score=45.94 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EEecc------CCccEEEEEEcCC---CCEEEEEeC------
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------ 325 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~l~~------h~~~V~~l~~sp~---~~~l~t~s~------ 325 (545)
-...+.++|.|+|+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +.+|+.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345779999999998777544457888876555432 22321 2456789999995 555554432
Q ss_pred -------CCeEEEEECCCCC-------eeeeEecc-CcccEEEEEEeCCCCcEEEEEc
Q 009059 326 -------DRTVRVWDTENPD-------YSLRTFTG-HSTTVMSLDFHPSKEDLLCSCD 368 (545)
Q Consensus 326 -------dg~I~vwd~~~~~-------~~~~~~~~-h~~~V~~l~~~p~~~~ll~s~s 368 (545)
...|.-|++.... ..+..+.. .......|+|.|+|..++..|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2345555553321 11111221 1234789999999865554443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.22 Score=47.98 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=98.3
Q ss_pred eEEEEECCCCCeeeeEeccC-cccEEEEEEeCCCCcEEEEEcC----CC-------cEEEEECCCCceeeEEeccCC--e
Q 009059 328 TVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--A 393 (545)
Q Consensus 328 ~I~vwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~ll~s~s~----dg-------~I~lwd~~~~~~~~~~~~~~~--v 393 (545)
.+.+||..+.+......... ...-.+++ ..+ +.+++.|+. ++ .+..||+.+.+....-..... -
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-EEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 47889988776533222211 11122222 233 456666662 12 277889887665432222111 1
Q ss_pred eEEEEeCCCCEEEEEECC-------CeEEEEECCCCEEEEE--ecCCCCCEEEEEEcCCCCEEEEEe--C-----CcEEE
Q 009059 394 TQMRFQPRLGRILAAAIE-------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRV 457 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~d-------g~I~i~d~~~~~~~~~--~~~h~~~I~~l~~sp~g~~l~s~s--d-----g~I~v 457 (545)
..++.. ++..++.|+.+ ..+.+||..+.+-... +....... +++. .++++++.|+ + ..+.+
T Consensus 103 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence 222222 44566666653 3588999988754332 11111111 1222 3566666665 2 25899
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-----CeEEEEeCCCCeEEEeccCCC--CeeEEEEeCCCC
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNG 530 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd~~ 530 (545)
||+.+.. ...+..+..... -.+++. -++..++.|+.+ ..+.+||+.+++...+..... .-.++. .-+++
T Consensus 180 yd~~~~~-W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~ 255 (318)
T 2woz_A 180 YNPKKGD-WKDLAPMKTPRS-MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGS 255 (318)
T ss_dssp EETTTTE-EEEECCCSSCCB-SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTE
T ss_pred EcCCCCE-EEECCCCCCCcc-cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCE
Confidence 9987652 111111111111 122222 255666666653 268899998887664432211 111222 23567
Q ss_pred EEEEEeCC
Q 009059 531 MVASASHD 538 (545)
Q Consensus 531 ~las~s~D 538 (545)
+++.|+.+
T Consensus 256 i~v~GG~~ 263 (318)
T 2woz_A 256 LYAIGGFA 263 (318)
T ss_dssp EEEECCBC
T ss_pred EEEECCee
Confidence 77777754
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.18 Score=45.60 Aligned_cols=175 Identities=10% Similarity=-0.070 Sum_probs=95.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe-----eeeEeccC--cccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec
Q 009059 317 LSRLATSSADRTVRVWDTENPDY-----SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~-----~~~~~~~h--~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~ 389 (545)
..+|+....| +|+.=....... ....+ +. =..+..++|+|++. |.++ .+|.++-.+..+.....-+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 4567777777 655544443321 11111 22 13677999999765 5544 578877777655322211111
Q ss_pred cC--------CeeEEEEeCCCCEEEEEECCCeEEEEECCCCEE-------EEEecCCCCCEEEEEEcCCCCEEEEEeCCc
Q 009059 390 QS--------GATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL 454 (545)
Q Consensus 390 ~~--------~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~-------~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~ 454 (545)
.. .-..+.|.+++..+++ .||.|+-++..+... ...-..-=..+..|.+.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11 1378899999665555 669998888643110 11111111467999999999999988 887
Q ss_pred EEEEEcCCCCC--c-ceEEEEe-eCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 455 VRVWSIGSGSK--G-ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 455 I~vwd~~~~~~--~-~~i~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
++-+...+... . .....+- ..-....-+.|.+++...++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 54433221110 0 0111111 222334556688888754444 66443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.14 Score=49.81 Aligned_cols=186 Identities=8% Similarity=0.007 Sum_probs=101.1
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccC-CccEEEEEEc--CCCCEEEEE--eCCCeEEEEECCCCCeeeeEecc----
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATS--SADRTVRVWDTENPDYSLRTFTG---- 346 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h-~~~V~~l~~s--p~~~~l~t~--s~dg~I~vwd~~~~~~~~~~~~~---- 346 (545)
.+++.++.||.|.-.|.++|+.+..++.. ..++....-. +.+..++.+ ..||.|..++..++.... .+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 36888899999999999999999888654 1222221100 112234433 579999999988764322 1110
Q ss_pred CcccEEE---EEE-eC---CCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee--------EEEEe-----CCCCEEE
Q 009059 347 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT--------QMRFQ-----PRLGRIL 406 (545)
Q Consensus 347 h~~~V~~---l~~-~p---~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~--------~l~~s-----p~~~~l~ 406 (545)
...++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+....... |.... ..++.++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112221 000 00 013466789999999999999999999887543211 11111 1235677
Q ss_pred EEECCCeEEEEECCCCEEEEEe-----cCCCCC--E-EEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q 009059 407 AAAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS 464 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~-----~~h~~~--I-~~l~~sp~g~~l~s~sdg~I~vwd~~~~~ 464 (545)
.+..+..+.+.+ ++++ +..+ ..+... + ..-..+.++.++++..||.|.-+|..++.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence 777777777766 4443 2111 111000 0 00000123566554447888887777663
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.36 Score=47.20 Aligned_cols=185 Identities=10% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCEEEEEeC-C---------CcEEEEEcCCCeEEEE--ec-cCCccEEEEEEcCCCCEEEEEeCC--------------
Q 009059 274 DGKLLATGGH-D---------KKAVLWCTESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSAD-------------- 326 (545)
Q Consensus 274 dg~~latg~~-d---------g~I~lwd~~~~~~~~~--l~-~h~~~V~~l~~sp~~~~l~t~s~d-------------- 326 (545)
++++++.|+. + ..+.+||..+.+-... +. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5677777775 2 4688899887543321 11 1111222222 467788888765
Q ss_pred -------------------------CeEEEEECCCCCeeeeEeccCcccE-EEEEEeCCCCcEEEEEcC------CCcEE
Q 009059 327 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 374 (545)
Q Consensus 327 -------------------------g~I~vwd~~~~~~~~~~~~~h~~~V-~~l~~~p~~~~ll~s~s~------dg~I~ 374 (545)
..+.+||..+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 4788999987654322111111111 223333 2456656653 34577
Q ss_pred EEEC--CCCceeeEEec--cCC-eeEEEEeCCCCEEEEEECC----------------------CeEEEEECCCC--EEE
Q 009059 375 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 425 (545)
Q Consensus 375 lwd~--~~~~~~~~~~~--~~~-v~~l~~sp~~~~l~~~~~d----------------------g~I~i~d~~~~--~~~ 425 (545)
+||+ .+.+....-.. ... ....+...++..++.|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 7887 44333222111 111 1112223344555666532 25789998865 334
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe-CC------cEEEEEcCCCC
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 464 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s-dg------~I~vwd~~~~~ 464 (545)
..+......-.++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33433222222332 3566666666 32 35556777653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.22 Score=54.01 Aligned_cols=222 Identities=5% Similarity=0.000 Sum_probs=113.4
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCCeeeeEec------cCcccEEEEEEeC-CCCcEEEEEcCC------CcEEEEE
Q 009059 315 PSLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWS 377 (545)
Q Consensus 315 p~~~~l~t~s~d----g~I~vwd~~~~~~~~~~~~------~h~~~V~~l~~~p-~~~~ll~s~s~d------g~I~lwd 377 (545)
.++.+++.|+.+ ..+.+||..+.......+. .....-.+++..+ + +.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEe
Confidence 456677777653 3588888887654322201 1111112333333 4 3566666543 3588899
Q ss_pred CCCCceeeEEeccC--CeeEEEEeCCCCEEEEEECCC--eEEEEECCCCEEEEEe-----cCCCCCEEEEEEcCC-CCEE
Q 009059 378 INNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKL-----QGHKNQVHSVCWNTS-GEYL 447 (545)
Q Consensus 378 ~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~~~~dg--~I~i~d~~~~~~~~~~-----~~h~~~I~~l~~sp~-g~~l 447 (545)
+.+.+....-.... .-.+++...++..++.|+.++ .+.+||..+..-...- ........++.+..+ ++++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 98765443222111 122333334667777777644 7999999987543321 111222233555554 6666
Q ss_pred EEEe---C-----CcEEEEEcCCCCC-----cceEEEEeeCCCceEEEEEcCCCCEEEEEEc--------CCeEEEEeCC
Q 009059 448 ASVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMT 506 (545)
Q Consensus 448 ~s~s---d-----g~I~vwd~~~~~~-----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~--------dg~I~iwd~~ 506 (545)
+.|+ + +.+.+||+.+..- ...+.........-.+++...++..++.||. ...|.+||+.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 6665 2 2588999987641 1222221111111223333343666677764 2469999999
Q ss_pred CCeEEEeccCC--------CCe-eEEEEeCCCCEEEEEeC
Q 009059 507 ENKTLTLSAHD--------KLV-SSLAASTVNGMVASASH 537 (545)
Q Consensus 507 ~~~~~~~~~h~--------~~V-~~l~~spd~~~las~s~ 537 (545)
+++........ ..+ .++....++++++.||.
T Consensus 635 t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 635 SETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 88766322100 000 23334455677777764
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.16 E-value=2.8 Score=41.46 Aligned_cols=255 Identities=7% Similarity=-0.033 Sum_probs=120.0
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCeEEEEec------c--------CCccEEEEEEcC-C-CCEEE
Q 009059 264 SKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLE------E--------HTQWITDVRFSP-S-LSRLA 321 (545)
Q Consensus 264 ~~V~~l~~sp--dg~~latg~~dg----~I~lwd~~~~~~~~~l~------~--------h~~~V~~l~~sp-~-~~~l~ 321 (545)
..|.+|++.| ++.++| ++..+ .|...+ +.++.-..+. . +...|.+|++.| + ...|+
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 4699999998 454544 44444 343332 2232222211 1 113588899987 2 45566
Q ss_pred EEeCCCeEEEEECCCCCeeeeEecc-------------------CcccEEEEEEeCCC-CcEEEEEcCCCcEEEEECCCC
Q 009059 322 TSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG 381 (545)
Q Consensus 322 t~s~dg~I~vwd~~~~~~~~~~~~~-------------------h~~~V~~l~~~p~~-~~ll~s~s~dg~I~lwd~~~~ 381 (545)
.+...+.|... .++......+.. ....+.+|.+.|.. ..++ .+..++.|...+ ..+
T Consensus 133 ~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~-vg~~~ggl~~s~-DgG 208 (394)
T 3b7f_A 133 AGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY-IGMSSGGVFEST-DAG 208 (394)
T ss_dssp EEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE-EEEETBEEEEES-STT
T ss_pred EEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE-EEECCCCEEEEC-CCC
Confidence 66555544433 322221222211 12357899998843 3444 333344444332 222
Q ss_pred ceeeEEec--------------cCCeeEEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEecC--CC---CCEEEEEEc
Q 009059 382 SCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCWN 441 (545)
Q Consensus 382 ~~~~~~~~--------------~~~v~~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h~---~~I~~l~~s 441 (545)
+.-..+.. ...+.++.+.|. .+.++++.. +.|+..+-... .-..+.. .. ..+.++.++
T Consensus 209 ~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~G~-tW~~~~~~l~~~~~~~~~~i~~~ 286 (394)
T 3b7f_A 209 TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRREG-VWKRIGDAMPREVGDIGFPIVVH 286 (394)
T ss_dssp SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETTTT-EEECGGGGSCTTTCSCEEEEEEC
T ss_pred CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCCCC-cceECCCCCCCCCccceEEEEEC
Confidence 22111110 123778889885 356666654 44555543322 2222211 11 346778887
Q ss_pred CC--CCEEEEEe-----------CCcEEEEEcCC-CCCcceEEE-EeeCCC----ceEEEEEcCCC-CEEEEEEcCCeEE
Q 009059 442 TS--GEYLASVS-----------DELVRVWSIGS-GSKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETLE 501 (545)
Q Consensus 442 p~--g~~l~s~s-----------dg~I~vwd~~~-~~~~~~i~~-~~~~~~----~v~~~~~sp~~-~~l~~~~~dg~I~ 501 (545)
|. +.+++... ++...||.... +.....+.. +..... ....++++|.. ..|++++..+.|+
T Consensus 287 p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 287 QRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 63 34444431 22345665544 222222211 110000 11357787753 4577776666665
Q ss_pred EEeCCCCeEEEeccCCCCeeEEEEe
Q 009059 502 LWNMTENKTLTLSAHDKLVSSLAAS 526 (545)
Q Consensus 502 iwd~~~~~~~~~~~h~~~V~~l~~s 526 (545)
.-+-.......+..+-..+.+|.|.
T Consensus 367 ~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 367 ASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EECCCCCCceEcccCCCCeeEEEEe
Confidence 5433222233444444567777764
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.35 E-value=1.3 Score=41.77 Aligned_cols=240 Identities=13% Similarity=0.036 Sum_probs=121.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.|..++....- .++. . ||.|+.|-....-.+-.-......|..|+...... ++. . ||.|..|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 45566655332 2333 4 88888886543211111111233577777654433 333 4 89999998764332 1111
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee-eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 423 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~ 423 (545)
..-...|..++.... ..+ .-. +|.|+.|-......+ ........+..++.... ..++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCC
Confidence 111346777877643 333 334 899999976542221 11122344666655443 333344 7999998765321
Q ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEE
Q 009059 424 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 503 (545)
Q Consensus 424 ~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iw 503 (545)
.+-.-..-...|..|+..... .++. .|+.|+.|-........ .-......|..++..... .++.. ++.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 110000113467777765433 3444 68899999765421110 000112345555544333 34444 9999999
Q ss_pred eCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 504 NMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 504 d~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7665433322 3457777665444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.00 E-value=6 Score=40.19 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCe---EEEEec---------cCCccEEEEEEcCC----CCEEEEEeC-
Q 009059 264 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFT---VKSTLE---------EHTQWITDVRFSPS----LSRLATSSA- 325 (545)
Q Consensus 264 ~~V~~l~~spdg~-~latg~~dg~I~lwd~~~~~---~~~~l~---------~h~~~V~~l~~sp~----~~~l~t~s~- 325 (545)
..-+.|+|.|||. .|+++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 44455678999999754321 222221 11456889999996 333333221
Q ss_pred -C----------CeEEEEECCCC---------CeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCC-------------
Q 009059 326 -D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN------------- 370 (545)
Q Consensus 326 -d----------g~I~vwd~~~~---------~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~d------------- 370 (545)
+ ..|.-|.+... ...+..+. ........|.|.||+..++.+|+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444655421 11122221 1123467899999986555444321
Q ss_pred ---CcEEEEECCCCc-------------------eeeEEe-ccCCeeEEEEeCCC-----C-EEEEEECCC----eEEEE
Q 009059 371 ---SEIRYWSINNGS-------------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISIL 417 (545)
Q Consensus 371 ---g~I~lwd~~~~~-------------------~~~~~~-~~~~v~~l~~sp~~-----~-~l~~~~~dg----~I~i~ 417 (545)
|.|.-.|..... ....+. .......++|.|.. . +++++...| .-.|.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 234334444310 001111 12346678999973 2 344333212 12233
Q ss_pred ECCCC------EEEEEecCCC-CCEEEEEEcCC-------CCEEEEEeCCcEEEEEcCCCCCcceEEEE-e--------e
Q 009059 418 DVETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------C 474 (545)
Q Consensus 418 d~~~~------~~~~~~~~h~-~~I~~l~~sp~-------g~~l~s~sdg~I~vwd~~~~~~~~~i~~~-~--------~ 474 (545)
.+..+ .++..+..|. ..+..+.|... |.+|+..-.+.|....+...........+ . .
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 333 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGY 333 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSC
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccccc
Confidence 33222 2333443221 46778877532 34555444666665555433211111122 1 1
Q ss_pred CCCceEEEEEcCCCCEEEEEE
Q 009059 475 TGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~ 495 (545)
....+..+.+.|+|..+++..
T Consensus 334 ~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 334 FSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCSEEEEEEECTTCCEEEEEE
T ss_pred ccCcceEEEECCCCCEEEEec
Confidence 235689999999998666655
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=93.91 E-value=6.5 Score=42.33 Aligned_cols=235 Identities=9% Similarity=0.013 Sum_probs=121.0
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEEcCCCeEEE-Eec-cCCc------cEEEEEEcCCCCEEEEEe----------CCC
Q 009059 271 FSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS----------ADR 327 (545)
Q Consensus 271 ~spdg~~latg~~-----dg~I~lwd~~~~~~~~-~l~-~h~~------~V~~l~~sp~~~~l~t~s----------~dg 327 (545)
++||+++++.+-. ...|+++|+++++.+. .+. .-+. ....++|..+...+++.. .-.
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 7899998776522 2479999999988773 122 0000 113347764443444321 125
Q ss_pred eEEEEECCCCCe-eeeEeccCcccE-EEEEEeCCCCc----EEEEEc---CCCcEEEEECCC--CceeeEEeccCCeeEE
Q 009059 328 TVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCD---NNSEIRYWSINN--GSCAGVFKCQSGATQM 396 (545)
Q Consensus 328 ~I~vwd~~~~~~-~~~~~~~h~~~V-~~l~~~p~~~~----ll~s~s---~dg~I~lwd~~~--~~~~~~~~~~~~v~~l 396 (545)
.|+.|.+.+... ....+.+....+ .....++++.. ++++.+ ....+++.+... ++.. .+..+.... +
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~ 294 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDAT-L 294 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTCE-E
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcce-E
Confidence 689998876532 223444333333 33445566653 444433 224567777653 3322 222222222 2
Q ss_pred EEeCCCCEEEEE-----------ECCCeEEEEECCCCE-------EEEE-ec-CCCCCEEEEEEcCCCCEEEEEe-CC--
Q 009059 397 RFQPRLGRILAA-----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DE-- 453 (545)
Q Consensus 397 ~~sp~~~~l~~~-----------~~dg~I~i~d~~~~~-------~~~~-~~-~h~~~I~~l~~sp~g~~l~s~s-dg-- 453 (545)
....+ +.+++. ...+.|.+.|+.+.. .... +. .....+..+.|..+ .++++.. ++
T Consensus 295 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 295 QGSFK-EYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEET-TEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred eeeEC-CEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 23334 344332 235679999987531 1122 22 23346778888865 4555555 66
Q ss_pred cEEEEEcCCCC-CcceEEEEeeCCCceEEEEEcCCCCEEEEE-EcC---CeEEEEeCCCCeEE
Q 009059 454 LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 511 (545)
Q Consensus 454 ~I~vwd~~~~~-~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~-~~d---g~I~iwd~~~~~~~ 511 (545)
.|.++++.++. ....+..+.. ...+....+.+++..++.. ++. ..++.+|+. ++..
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57788776542 1111111211 2456666666776554444 332 388888887 5443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.77 Score=49.62 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=84.6
Q ss_pred EEEcCCCCEEEEEeCC------CcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCC
Q 009059 269 CHFSPDGKLLATGGHD------KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPD 338 (545)
Q Consensus 269 l~~spdg~~latg~~d------g~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~ 338 (545)
+.+..++++++.||.+ ..+.+||..+.+-.. .+...... .+++...++++++.|+.++ .+.+||..+..
T Consensus 446 ~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp EEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred EEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 3333277788888754 357888987743322 22211111 1223323778888887654 68999998765
Q ss_pred eeeeEe----ccCcccEEEEEEeCCCCcEEEEEcC--C-----CcEEEEECCCCc------eeeEEec--cCC-eeEEEE
Q 009059 339 YSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRF 398 (545)
Q Consensus 339 ~~~~~~----~~h~~~V~~l~~~p~~~~ll~s~s~--d-----g~I~lwd~~~~~------~~~~~~~--~~~-v~~l~~ 398 (545)
...... ........++.+..+...+++.|+. + ..+.+||+.+.. ....... ... -..+..
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 422221 1111222334555553456667764 2 458899998876 2222111 111 123333
Q ss_pred eCCCCEEEEEEC--------CCeEEEEECCCCEEE
Q 009059 399 QPRLGRILAAAI--------ENYISILDVETQVCR 425 (545)
Q Consensus 399 sp~~~~l~~~~~--------dg~I~i~d~~~~~~~ 425 (545)
..++..++.|+. ...|.+||+.+.+-.
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 333466666664 346999999987544
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.72 E-value=1.9 Score=40.63 Aligned_cols=217 Identities=11% Similarity=0.010 Sum_probs=111.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 385 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~ 385 (545)
..|..|+.... ..+.-. ||.|..|-...... +-.-......|..++.... ..++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 333335 89999998664332 1111112335777766533 34434 4 8999999865422111
Q ss_pred -EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q 009059 386 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 464 (545)
Q Consensus 386 -~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~ 464 (545)
.......+..++... ...++.. +|.|+.|-....-.+-........|..++......+ +.. |+.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL-AVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EEE-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEE-EEE-CCEEEEecCCCCC
Confidence 111224566666655 3455556 999999976532110000112345777765443322 223 7888888765421
Q ss_pred CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEE
Q 009059 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 543 (545)
Q Consensus 465 ~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~i 543 (545)
... ........|..++..... .++. .++.|+.|-......+ .-......|..|+..... .++.. ||.|..
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 000112345555544333 3333 6889999976543222 111122457777755433 33333 888888
Q ss_pred c
Q 009059 544 W 544 (545)
Q Consensus 544 W 544 (545)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.51 Score=48.58 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=84.1
Q ss_pred ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC------ce-------eeEEeccCCeeEEEEeCCCCEEEEEECCCeEE
Q 009059 349 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS 415 (545)
Q Consensus 349 ~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~------~~-------~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~ 415 (545)
.....+.++|+|+++++++-.+.++.++|++.- +. ....+..-+....+|.++|.-+.+..-|..|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence 345577889999999999989999999998741 11 22334456688999999974444444699999
Q ss_pred EEECCCC----------EEEEEecCCCCCEEEEEE------cCCCCEEEEEe----CCc----------EEEEEcCCCCC
Q 009059 416 ILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DEL----------VRVWSIGSGSK 465 (545)
Q Consensus 416 i~d~~~~----------~~~~~~~~h~~~I~~l~~------sp~g~~l~s~s----dg~----------I~vwd~~~~~~ 465 (545)
.|++... ..+..+.-|-.+ -.+.- .++|++|++.. |.. -.++|+.. .+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dk 480 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DE 480 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-Cc
Confidence 9998753 345555555433 23332 57899999876 432 36788854 34
Q ss_pred cceEEEEeeCC
Q 009059 466 GECIHELSCTG 476 (545)
Q Consensus 466 ~~~i~~~~~~~ 476 (545)
...++......
T Consensus 481 M~lv~D~P~~~ 491 (638)
T 3sbq_A 481 MKLVHDGPTFA 491 (638)
T ss_dssp CEEEEEEEESS
T ss_pred eEEEecCCCCC
Confidence 45666554433
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=7.4 Score=38.25 Aligned_cols=164 Identities=10% Similarity=0.094 Sum_probs=97.2
Q ss_pred cEEEEECCCC--ceeeEEeccC-------CeeEEEEe---CC----CCEEEEEEC-CCeEEEEECCCCEEEEEec----C
Q 009059 372 EIRYWSINNG--SCAGVFKCQS-------GATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQ----G 430 (545)
Q Consensus 372 ~I~lwd~~~~--~~~~~~~~~~-------~v~~l~~s---p~----~~~l~~~~~-dg~I~i~d~~~~~~~~~~~----~ 430 (545)
.|.+||+.+. +.++.+..+. ....+.+. +. +.+.+.+.. .+.|.|||+.+++..+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 7777776532 36777777 22 344455543 6789999999987665442 1
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEe-CCcEEEEEcC-----CCCCcceEEEEeeCC--CceEEEEE
Q 009059 431 H--------------KNQVHSVCWNTS----GEYLASVS-DELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVF 484 (545)
Q Consensus 431 h--------------~~~I~~l~~sp~----g~~l~s~s-dg~I~vwd~~-----~~~~~~~i~~~~~~~--~~v~~~~~ 484 (545)
. ...|..|+++|+ ++.|.... .+ -++|.+. .......+..+-... ..-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 1 247888999998 77777776 33 2344332 222112233222222 33445667
Q ss_pred c-CCCCEEEEEEcCCeEEEEeCCC-C----eEE--EeccCCCCeeEEEEeCCCCEEEEEe
Q 009059 485 H-PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 485 s-p~~~~l~~~~~dg~I~iwd~~~-~----~~~--~~~~h~~~V~~l~~spd~~~las~s 536 (545)
. .+|..+++--....|..|+..+ . ... .....-..+..+.+..++.+.+...
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5 5666555555667999999876 1 111 2222223577888877877665553
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.35 E-value=11 Score=38.35 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=115.4
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCC--eeeeEec---------cCcccEEEEEEeCC---CCcEEEEEcC-
Q 009059 306 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 369 (545)
Q Consensus 306 ~~V~~l~~sp~~~-~l~t~s~dg~I~vwd~~~~~--~~~~~~~---------~h~~~V~~l~~~p~---~~~ll~s~s~- 369 (545)
...+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ ...++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999986 56666789999999754221 1112111 11456889999996 2334433321
Q ss_pred -C----------CcEEEEECCCC----------ceeeEEec---cCCeeEEEEeCCCCEEEEEECCC-------------
Q 009059 370 -N----------SEIRYWSINNG----------SCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 412 (545)
Q Consensus 370 -d----------g~I~lwd~~~~----------~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~dg------------- 412 (545)
+ ..|.-|.+..+ +.+..+.. ......|.|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444555421 22222221 22367899999986666555432
Q ss_pred ----eEEEEECCCC---------------------EEEEEecCCCCCEEEEEEcCC-----CCE-EEEEeC-C----cEE
Q 009059 413 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 456 (545)
Q Consensus 413 ----~I~i~d~~~~---------------------~~~~~~~~h~~~I~~l~~sp~-----g~~-l~s~sd-g----~I~ 456 (545)
.|.-+|.... ..+.. .+|. ....++|+|. |.+ +..+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333444331 01111 1232 2356889986 443 433321 2 233
Q ss_pred EEEcCCCCC---cceEEEEeeCC-CceEEEEEcCCCC------EEEEEEcCCeEEEEeCCCCe----EEEec-c------
Q 009059 457 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-A------ 515 (545)
Q Consensus 457 vwd~~~~~~---~~~i~~~~~~~-~~v~~~~~sp~~~------~l~~~~~dg~I~iwd~~~~~----~~~~~-~------ 515 (545)
|..+..+.. ...+..+..+. ..+..+.|-.... .++++...+.|....++... ...+. +
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433221 12333333221 4567777743321 25566666777666665432 11221 1
Q ss_pred --CCCCeeEEEEeCCCCEEEEEe
Q 009059 516 --HDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 516 --h~~~V~~l~~spd~~~las~s 536 (545)
....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 235789999999999877765
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.04 E-value=9.9 Score=37.35 Aligned_cols=211 Identities=9% Similarity=-0.024 Sum_probs=98.5
Q ss_pred EEEEEeCCCcEEEEEcCC-CeEEEEe--ccCCccEEEEEEcC-CCCEEEEEeCCCe--EEEEECCCCCeeeeEec-----
Q 009059 277 LLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSP-SLSRLATSSADRT--VRVWDTENPDYSLRTFT----- 345 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~-~~~~~~l--~~h~~~V~~l~~sp-~~~~l~t~s~dg~--I~vwd~~~~~~~~~~~~----- 345 (545)
.|..|+..| +.+++... ++.-..+ ......|.+|++.| +...|+.+...|. ..||...++......+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~ 102 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAF 102 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccC
Confidence 566677666 55554332 2211111 12235699999998 3334444444440 12332222221122211
Q ss_pred -c--------CcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCceeeEEe--------------------ccCCee
Q 009059 346 -G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQSGAT 394 (545)
Q Consensus 346 -~--------h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--------------------~~~~v~ 394 (545)
. ....|.++++.|. ...++ .+...+.|...+- .++.-..+. ....+.
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~ 180 (394)
T 3b7f_A 103 NKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH 180 (394)
T ss_dssp CCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred CCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence 0 1125788999873 34454 4444555554432 222211111 112367
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEECCCCEEEEEecC-----C--------CCCEEEEEEcCC-CCEEEEEeCCcEEEEE
Q 009059 395 QMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELVRVWS 459 (545)
Q Consensus 395 ~l~~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h--------~~~I~~l~~sp~-g~~l~s~sdg~I~vwd 459 (545)
.+.+.|. .+.++++..++.|+..+-.. +.-..+.. + ...+.+|.++|. ...|.++.++.|...+
T Consensus 181 ~i~~d~~~~~~l~vg~~~ggl~~s~DgG-~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~ 259 (394)
T 3b7f_A 181 SILVDPRDPKHLYIGMSSGGVFESTDAG-TDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMD 259 (394)
T ss_dssp EEEECTTCTTCEEEEEETBEEEEESSTT-SSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEE
T ss_pred EEEECCCCCCEEEEEECCCCEEEECCCC-CCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeC
Confidence 8888873 45677776666555543222 11111110 0 124899999986 3566666655555444
Q ss_pred cCCCCCcceEEEEee--CC---CceEEEEEcCC-CCEEEEEE
Q 009059 460 IGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIG 495 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~--~~---~~v~~~~~sp~-~~~l~~~~ 495 (545)
-. + .....+.. .. ..+..+.++|. ...|+++.
T Consensus 260 D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 260 RR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp TT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred CC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence 21 2 11222111 11 23567788763 34455554
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.38 E-value=11 Score=36.34 Aligned_cols=262 Identities=8% Similarity=0.014 Sum_probs=135.8
Q ss_pred CEEEEEeCCCcEEEEEcCCC-------eEE--EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE---ECCCCC-----
Q 009059 276 KLLATGGHDKKAVLWCTESF-------TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPD----- 338 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~-------~~~--~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw---d~~~~~----- 338 (545)
..+++.+.+|.|+--.+.+. +-+ ..++ ..+.+..+........|+.-+..|.+.-. ++....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 46677788888886654321 111 1222 23445555554555667766777766544 443221
Q ss_pred eeeeEec--cCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCc-------eeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 339 YSLRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS-------CAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 339 ~~~~~~~--~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~-------~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
.++..+. .....|.++...++ .+..++..+.+|.|+-..+.... ....++....+..+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 1111111 12345666554432 23455588889999988765422 2222333445666666666688999
Q ss_pred EECCCeEEEEECC--C---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCc----ceEEE
Q 009059 408 AAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIHE 471 (545)
Q Consensus 408 ~~~dg~I~i~d~~--~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~----~~i~~ 471 (545)
.+..|.+..+.+. . |.....+. ....|.++...+.+.+|+..+ .|.++.-.+...... .-+..
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999999888776 2 22222232 345677777666666777766 888888876532110 11222
Q ss_pred --EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-------Eec--cCCCCeeEEEEeCC-CCEEEEEeCCC
Q 009059 472 --LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 539 (545)
Q Consensus 472 --~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-------~~~--~h~~~V~~l~~spd-~~~las~s~Dg 539 (545)
+......+..+....+...++..+..|.+.-++...-... ... .....|.++...+. ...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 2221334555544445566888888887777765432211 111 22345666655443 34566666555
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.45 E-value=21 Score=38.36 Aligned_cols=224 Identities=9% Similarity=0.050 Sum_probs=113.9
Q ss_pred EEEEE-EcCCCCEEEEE-eC----CCeEEEEECCCCCeeeeEec-cCcc------cEEEEEEeCCCCcEEEEEc------
Q 009059 308 ITDVR-FSPSLSRLATS-SA----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD------ 368 (545)
Q Consensus 308 V~~l~-~sp~~~~l~t~-s~----dg~I~vwd~~~~~~~~~~~~-~h~~------~V~~l~~~p~~~~ll~s~s------ 368 (545)
...+. ++|++++++.+ +. -..|+++|+.+++..-..+. .-+. ....++|..+ +.++++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCc
Confidence 33444 78888877664 22 24799999998765222222 0000 1134477633 45554321
Q ss_pred ----CCCcEEEEECCCCc--eeeEEeccCC--eeEEEEeCCCCE-----EEEEEC---CCeEEEEECCC--CEEEEEecC
Q 009059 369 ----NNSEIRYWSINNGS--CAGVFKCQSG--ATQMRFQPRLGR-----ILAAAI---ENYISILDVET--QVCRLKLQG 430 (545)
Q Consensus 369 ----~dg~I~lwd~~~~~--~~~~~~~~~~--v~~l~~sp~~~~-----l~~~~~---dg~I~i~d~~~--~~~~~~~~~ 430 (545)
....|+.|.+-+.. -...+..... ......+.++++ ++..+. ...+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 12468888887643 2233332222 234445566553 333332 24677777653 332 22322
Q ss_pred CCCCEEEEEEcCCCCEEEEE-----------eCCcEEEEEcCCCCCc----ceEEE-E-eeCCCceEEEEEcCCCCEEEE
Q 009059 431 HKNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 431 h~~~I~~l~~sp~g~~l~s~-----------sdg~I~vwd~~~~~~~----~~i~~-~-~~~~~~v~~~~~sp~~~~l~~ 493 (545)
..... +....++.+++.. ..+.|.+.++.++... ..... + ......+..+.|..+ ..+++
T Consensus 289 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDAT--LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTCE--EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcce--EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 22221 2334455555532 1457899998764210 11122 2 223445777888876 45556
Q ss_pred EEcCC--eEEEEeCCCCe--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEe
Q 009059 494 IGCYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 536 (545)
Q Consensus 494 ~~~dg--~I~iwd~~~~~--~~~-~~-~h~~~V~~l~~spd~~-~las~s 536 (545)
...++ .|+++|+.++. ... +. ...+.+..+.+.+++. ++++.+
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 66666 67888876664 212 21 1134566666667665 444444
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.26 E-value=18 Score=34.36 Aligned_cols=232 Identities=9% Similarity=0.068 Sum_probs=122.7
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEE---------EeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCC--
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD-- 338 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~~---------~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~---~~~~-- 338 (545)
|+..++++.+.+|.|+--.+...+... .++.+ +.+..+........|+..+..|.+.-+.. ....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999999877765433221 12233 33444444445567777778887655543 3221
Q ss_pred ---eeee---EeccCcccEEEEEEeC--CCCcEEEEEcCCCcEEEEECCC-------CceeeEEeccCCeeEEEEeCCCC
Q 009059 339 ---YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 403 (545)
Q Consensus 339 ---~~~~---~~~~h~~~V~~l~~~p--~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~v~~l~~sp~~~ 403 (545)
.++. .+. ....|.++...+ +....++..+.+|.++-..+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 122 334566664432 1233344777899999887642 11112223334555555555567
Q ss_pred EEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC------Ccc
Q 009059 404 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 467 (545)
Q Consensus 404 ~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~------~~~ 467 (545)
.++..+.+|.+..++... |.....+. ....|.++....++..|+..+ .|.++..++.... ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222233 345677776555556666666 7888888764321 111
Q ss_pred eEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 468 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 468 ~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
....+......+..+....+...++..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1112222224444444433445577777777666665543
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=34 Score=37.28 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCeEEEEeccC-------CccEEEEEEcCC-CCEEEEEeCCCe----E
Q 009059 263 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 329 (545)
Q Consensus 263 ~~~V~~l~~spd-g~~latg~~dg~I~lwd~~~~~~~~~l~~h-------~~~V~~l~~sp~-~~~l~t~s~dg~----I 329 (545)
.+.|.+|+++|. ...++.++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 357999999995 45666677677766555 334433333322 246999999984 344544443211 3
Q ss_pred EEEECCCCCeeeeEecc---------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-------ccCCe
Q 009059 330 RVWDTENPDYSLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 393 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~---------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-------~~~~v 393 (545)
.||...++......... ....+..++++|.....++.+...+.|. .....++.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 45544433322222211 0113566888886555555665344332 2222232222221 11357
Q ss_pred eEEEEeCC-CCEEEEEECC-CeEE
Q 009059 394 TQMRFQPR-LGRILAAAIE-NYIS 415 (545)
Q Consensus 394 ~~l~~sp~-~~~l~~~~~d-g~I~ 415 (545)
..+.+.|. .+.++++..+ +.|+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 78888884 4467777665 4433
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.16 E-value=22 Score=33.16 Aligned_cols=196 Identities=10% Similarity=-0.024 Sum_probs=105.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCCeeeeEeccCcccEEEEEEeCC-CCcEEEEEcCCCcEEEEECCCCc
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRV---WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGS 382 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~v---wd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~ll~s~s~dg~I~lwd~~~~~ 382 (545)
.+..+.......+|+..+.+|.++- |++......- .+. ....|..+.. .+ .+..++..+.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3444433333445555556665543 3332211100 122 3445666543 32 23455578889999998865432
Q ss_pred ------eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEE
Q 009059 383 ------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYL 447 (545)
Q Consensus 383 ------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l 447 (545)
....++....+..+........++..+..|.++.+.... |.....+. ....|..+...+++.++
T Consensus 102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence 222233344566666655667899999999998887532 22222333 23566666555556566
Q ss_pred EEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEE--EeCCC
Q 009059 448 ASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 507 (545)
Q Consensus 448 ~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~i--wd~~~ 507 (545)
+..+ .|.++...+..... ..-+..+ .....+..+....+...++..+..|.+.. ++..+
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6666 88888888753211 1112222 23344544444344456777888887766 76543
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.70 E-value=26 Score=33.54 Aligned_cols=232 Identities=8% Similarity=0.034 Sum_probs=123.8
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCe----EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC---CCCC-----ee
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD-----YS 340 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~----~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~---~~~~-----~~ 340 (545)
|+..++++.+.+|.|+--.+...+ ....++.+ +.+..+........|+..+..|.+.-+.. .... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 556678888999999877554221 11123333 33444444445567777778887655543 2211 11
Q ss_pred ee---EeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCC--------CceeeEEeccCCeeEEEEeCCCCEEEE
Q 009059 341 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA 407 (545)
Q Consensus 341 ~~---~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~--------~~~~~~~~~~~~v~~l~~sp~~~~l~~ 407 (545)
+. .+. ....|.++...++ ....++..+.+|.++-..+.. +.....+.....+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 11 111 2334665544332 123344778899999887742 222222333345555555555678999
Q ss_pred EECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCC----cceEEE-
Q 009059 408 AAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIHE- 471 (545)
Q Consensus 408 ~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~-~l~s~s-dg~I~vwd~~~~~~----~~~i~~- 471 (545)
.+.+|.+..|.... |.....+. ....|.++...+++. .|+..+ .|..+..++..-.. ..-+..
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 99999998887642 22222232 345566665544444 555555 78877777754110 011111
Q ss_pred --EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCC
Q 009059 472 --LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 507 (545)
Q Consensus 472 --~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 507 (545)
+......+..+....+...++..+..|.+..+.+..
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 212222454433333445577777777666665543
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=85.28 E-value=26 Score=33.27 Aligned_cols=186 Identities=11% Similarity=0.104 Sum_probs=108.0
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEE---------EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CC--
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-- 338 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~~~---------~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~---~~-- 338 (545)
++..++++.+.+|.|+--.+...+.. ..++.. +.+..+........++..+..|.++-+.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45668888999999998876543221 122333 3455555555566788888899877665431 11
Q ss_pred ---ee---eeEeccCcccEEEEEEeC---CCCcEEEEEcCCCcEEEEECCC-------CceeeEEeccCCeeEEEEeCCC
Q 009059 339 ---YS---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRL 402 (545)
Q Consensus 339 ---~~---~~~~~~h~~~V~~l~~~p---~~~~ll~s~s~dg~I~lwd~~~-------~~~~~~~~~~~~v~~l~~sp~~ 402 (545)
.. ...+. ....|.++...+ +..+++ ..+..|.++...+.. |.....+.....+..+......
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll-~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLL-LTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEE-EEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEE-EEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 00 01122 223455554433 233444 667799998887743 2222233334456666665556
Q ss_pred CEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 403 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
..++..+.+|.+..+.... |.....+. ....|..+....++..|++.+ .|..+..++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 7899999999999997643 22233333 245666666655555555555 88888888753
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.22 E-value=33 Score=33.52 Aligned_cols=232 Identities=10% Similarity=0.034 Sum_probs=126.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcCC---------CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE---CCCC-
Q 009059 271 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENP- 337 (545)
Q Consensus 271 ~spdg~~latg~~dg~I~lwd~~~---------~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd---~~~~- 337 (545)
+-|+..++++.+.+|.|+--.+.. +..-..++. .+.+..+........|+..+..|.+.-+. +...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999765432 122233443 45566666655666777777888766554 3321
Q ss_pred ----Ceeee---EeccCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCC-------ceeeEEeccCCeeEEEEeCC
Q 009059 338 ----DYSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 401 (545)
Q Consensus 338 ----~~~~~---~~~~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~-------~~~~~~~~~~~v~~l~~sp~ 401 (545)
...+. .+. ....|.++....+ ....++.++..|.++...+... .....+.....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 11111 122 2345666554321 2334557778999998876432 22222333344555555555
Q ss_pred CCEEEEEECCCeEEEEECCC---------CEEEEEecCCCCCEEEEEEcC------------------------------
Q 009059 402 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 442 (545)
Q Consensus 402 ~~~l~~~~~dg~I~i~d~~~---------~~~~~~~~~h~~~I~~l~~sp------------------------------ 442 (545)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999988887542 22222232 234555554443
Q ss_pred -----CCCEEEEEe-CCcEEEEEcCCCCC----cceEE--EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 443 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 443 -----~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
++.+|++.+ .|..+...+..... ..=+. .+....+.+..+.+..+...++..+..|.+.-..+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 345666666 78888877653211 01111 22222334544444444455667777775555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 545 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-32 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-19 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-29 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-27 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-26 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-15 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-19 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-17 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-17 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-17 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-17 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-16 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-14 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-10 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 9e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 123 bits (309), Expect = 7e-32
Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 5/286 (1%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 323 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
D +++ + + + R GH+ + F + + S D + +
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIET 173
Query: 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
+ P ++ A + + DV +CR GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 440 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 499
+ +G A+ SD+ + + S F + LL
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 500 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+W+ + L+ HD VS L + VA+ S D +KIW
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.6 bits (210), Expect = 9e-19
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 44/196 (22%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 325
V S +PD +L +G D A LW + T H I + F P+ + AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 326 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384
D T R+ + + + + S+ F S LL + ++ W A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305
Query: 385 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 444
GV L GH N+V + G
Sbjct: 306 GV-----------------------------------------LAGHDNRVSCLGVTDDG 324
Query: 445 EYLASVS-DELVRVWS 459
+A+ S D +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.4 bits (207), Expect = 2e-18
Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 309
Q S + + F P+G ATG D L+ + T IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 369
V FS S L D VWD D GH V L + +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332
Query: 370 NSEIRYWS 377
+S ++ W+
Sbjct: 333 DSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (289), Expect = 2e-29
Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 28/306 (9%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
S V F P ++ + D +W E+ + TL+ HT + D+ F S LA+
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
SAD T+++WD + + D + S + I+ W + G
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSS--VSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 383 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWN 441
C F +M + G ++A+ + + + V T+ C+ +L+ H++ V + W
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194
Query: 442 TSGEYLASV---------------------SDELVRVWSIGSGSKGECIHELSCTGNKFH 480
Y + D+ +++W + S G C+ L N
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVR 251
Query: 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 539
+FH +L +TL +W+ + + TL+AH+ V+SL V + S D+
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 540 CVKIWK 545
VK+W+
Sbjct: 312 TVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 109 bits (271), Expect = 5e-27
Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 26/270 (9%)
Query: 298 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 357
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68
Query: 358 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 417
S + L + + + + + + P I++A+ + I +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 418 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 476
+V+T C GH+ V V N G +AS S D+ VRVW + + EC EL
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREHR 185
Query: 477 NKFHSCVFHPTFPSLLVIGCY--------------------ETLELWNMTENKTL-TLSA 515
+ + P + +T+++W+++ L TL
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 516 HDKLVSSLAASTVNGMVASASHDKCVKIWK 545
HD V + + + S + DK +++W
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD 275
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 84.0 bits (206), Expect = 2e-18
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 251 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 310
+ + + E+ G L +G DK +W + TL H W+
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 370
V F + + + D+T+RVWD +N ++T H V SLDFH + + + +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310
Query: 371 SEIRYW 376
++ W
Sbjct: 311 QTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.9 bits (203), Expect = 5e-18
Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
T + V + DG L+A+ +D+ +W + K+ L EH + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 312 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 371
++P S + S A + + + L S +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPF------------------------LLSGSRDK 227
Query: 372 EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 430
I+ W ++ G C + F IL+ A + + + D + + C L
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 431 HKNQVHSVCWNTSGEYLASVS-DELVRVW 458
H++ V S+ ++ + Y+ + S D+ V+VW
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 3e-15
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
T + + V F GK + + DK +W ++ TL H ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 312 RFSPSLSRLATSSADRTVRVWD 333
F + + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 0.001
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 501 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ W + LS H V+ + V ++ SAS D +K+W
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 107 bits (266), Expect = 9e-26
Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 46/326 (14%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 304
TS V FS DG+ LATG +K ++ ++ + L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 364
+I V FSP LAT + DR +R+WD EN + + D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178
Query: 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 423
S + +R W + G C+ + G T + P G+ +AA ++ + + D ET
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 424 CRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------G 466
+L GHK+ V+SV + G+ + S S D V++W++ + + G
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAA 525
C + S +L + W+ + N L L H V S+A
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 526 STV------NGMVASASHDKCVKIWK 545
+ + A+ S D +IWK
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.8 bits (182), Expect = 4e-15
Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 301
+E + V S F+ DG+ + +G D+ LW ++ KS T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 302 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 359
H ++ V + + + + S DR V WD ++ + L GH +V+S+
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363
Query: 360 ---KEDLLCSCDNNSEIRYWSI 378
+ ++ + + + R W
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 1e-14
Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 36/277 (12%)
Query: 303 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 345
+HT + V+FS LAT ++T +V+ + + + +
Sbjct: 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 346 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 405
+ S+ F P + L ++ + N + + + + P ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 464
++ + + + I D+ T C L L G+Y+A+ S D VRVW +G
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 465 KGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------- 511
E + + +G + +S VF S++ +++LWN+
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 512 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
T H V S+A + + + S S D+ V W
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 47/218 (21%), Positives = 75/218 (34%), Gaps = 27/218 (12%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
+ P G L +G D+ +W + TL T +A S DR
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 329 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
VRVWD+E D + TGH +V S+ F + S + ++ W++ N +
Sbjct: 229 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNAN 287
Query: 383 CAGVFK-------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429
K + + IL+ + + + D ++ L LQ
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 430 GHKNQVHSVCWNTS------GEYLASVS-DELVRVWSI 460
GH+N V SV A+ S D R+W
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (163), Expect = 1e-12
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 316
V S + + + + +G D+ + W +S L+ H + V P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 317 LSRLATSSADRTVRVWDTE 335
+ AT S D R+W +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 8e-09
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 39/280 (13%)
Query: 299 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 352
+ H++ I + +++ P D L H++ V
Sbjct: 7 NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66
Query: 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------------- 393
+ F E L C+ + + +++GS S A
Sbjct: 67 CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124
Query: 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 453
+ F P G+ LA E+ + + + + Q
Sbjct: 125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---------ETLELWN 504
V + + G + P + G ET L
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 505 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+++ + + H V S+ + V S S D+ VK+W
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.8 bits (226), Expect = 7e-21
Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 9/288 (3%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 317
V + S + + TGG +W KS + + +I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 377
L T+ +WD P ++ S + SC ++ I W
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 437
++N + F+ + G L + + +L+ +Q+ S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 438 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497
+ + +GE+ ++ + ++L + S F + G
Sbjct: 230 LGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 498 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
L W ++ S V S S + + + S DK +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 1e-16
Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 9/295 (3%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
FQ S S H + DG++ D +TL H + + V S
Sbjct: 3 FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 315 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 370
+ T V+VWD +P S + S P L+ + +
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 371 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 430
+ + S + + + +I + L Q
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 431 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490
+ + C + S + + L +G + + T S + PT
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEW 238
Query: 491 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
L V +E+ ++ + L H+ V SL + S D + W+
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.0 bits (224), Expect = 1e-20
Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
V +C G + +G D +W + TL HT + + ++ +
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+ V +T ++L T + + S ++ +R W I G
Sbjct: 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128
Query: 383 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442
C V A + R+++ A + + + D ET+ C LQGH N+V+S+ ++
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD- 186
Query: 443 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501
G ++ S S D +RVW + G CIH L+ + L+ T++
Sbjct: 187 -GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVK 240
Query: 502 LWNMTENKTLTLSAHDKLVSS--LAASTVNGMVASASHDKCVKIW 544
+W++ + L S V ++S D VK+W
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 4e-14
Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 18/202 (8%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198
Query: 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388
+RVWD E + + T TGH + ++ ++L S + +S ++ W I G C +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254
Query: 389 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVC-----RLKLQGHKNQVHSVCWN 441
+ Q ++ ++ + + + D++T L+ G V + +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314
Query: 442 TSGEYLASVSDE-----LVRVW 458
+ A S + V
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 12/122 (9%)
Query: 268 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 324
+ +L +G D +W + +H +T ++F+ + TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277
Query: 325 ADRTVRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYWS 377
D TV++WD + + G V + +K N +E +
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Query: 378 IN 379
+
Sbjct: 338 FD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (86), Expect = 0.002
Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 33/202 (16%)
Query: 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 435
W V K Q RI++ + +N + + T C L GH V
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 436 HSVCWNTSGEYL-------------------------ASVSDELVRVWSIGSGSKGECIH 470
S + ++V + + SGS+ +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 471 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 530
+ + V + + + + +L T
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180
Query: 531 M--------VASASHDKCVKIW 544
V S S D +++W
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVW 202
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.6 bits (215), Expect = 3e-19
Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 31/306 (10%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 323
+ ++ D +A ++ + ++ + L+EH +T V ++P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 324 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 382
DR VW + + E + I +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 383 ----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET----------------- 421
+S + + P + A + + I
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 422 -QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKF 479
+ VH VC++ +G +A VS + V + + +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLP 245
Query: 480 HSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538
V T SL+ G L+ + L+ + + + + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305
Query: 539 KCVKIW 544
K
Sbjct: 306 KKASSE 311
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.7 bits (184), Expect = 2e-15
Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%)
Query: 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 362
+ I+ ++ +++A + V +++ + + H+ V +D+ P +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64
Query: 363 LLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDV 419
+ +C + W++ + + A +R+ P + + ISI
Sbjct: 65 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
Query: 420 ET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGS---------- 464
E VC+ + ++ V S+ W+ + LA+ S + R++S
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
Query: 465 -----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 519
GE + E S + H F + + T+ L + + + A + L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244
Query: 520 VSSLAASTVNGMVASASHDKCVKIW 544
+ +A HD ++
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLF 269
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.6 bits (163), Expect = 8e-13
Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 30/320 (9%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 309
+ + + +V ++PD + T G D+ A +W + T K + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 310 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 367
VR++P+ + A S R + + EN + + + + LL +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 368 DNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRFQPRLGRILAA 408
+ + R +S + F R+
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219
Query: 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 468
+ ++ + + D + ++ L + +V + T +A+ D +++ S +
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---G 276
Query: 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS-- 526
+ + S H VS ++
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336
Query: 527 --TVNGMVASASHDKCVKIW 544
+ D + IW
Sbjct: 337 GKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
F + L+A GHD VL+ +S K + +R + D+
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 382
+ L + H +V + +K C+ + + W + +
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 318
+ DKKA + + H ++ + S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 319 RLATSSADRTVRVWDTENPDYSLRTF 344
+ T+ D + +WD + + +L+
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 429 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487
+ WN +A + V ++ SG+K +HEL + + P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 488 FPSLLVIGCYETLELWNM 505
++ G +W +
Sbjct: 63 SNRIVTCGTDRNAYVWTL 80
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.7 bits (210), Expect = 5e-19
Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 30/288 (10%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 330
D + + +G D +W + K L HT + +++ + +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV------IITGSSD 74
Query: 331 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 388
+ ++ ++ +C + I W + + + + +
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 448
A I++A+ + I + + T L GHK + C +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVV 192
Query: 449 S-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 506
S SD +R+W I EC L +V G Y+ +++W++
Sbjct: 193 SGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 507 ENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
TL H V L + S+SHD + IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 5e-08
Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 51/247 (20%)
Query: 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 358
E ++ + +++ ++ + D T+++WD + R TGH+ +V+ L +
Sbjct: 9 HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65
Query: 359 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 418
S + + + + +I + +
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW-DMAS 124
Query: 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 478
R L GH+ V+ V ++ AS D ++VW+ + E + L+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC---EFVRTLNGHKRG 180
Query: 479 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538
+ +V S S D
Sbjct: 181 IACLQYRDR-------------------------------------------LVVSGSSD 197
Query: 539 KCVKIWK 545
+++W
Sbjct: 198 NTIRLWD 204
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 319
D K + +G +D K +W + TL EH+ + ++F +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279
Query: 320 LATSSADRTVRVWD 333
+ +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.9 bits (200), Expect = 2e-17
Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 19/299 (6%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
+ V +C + + TG DK ++ + + L H + ++++ L +
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
S DRTVRVWD + + +ST + + ++ + W + S
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 383 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 442
+ + P + +++ + + + + G + V
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189
Query: 443 SGEYLASVSDELVRVWSIGSGSKGECI-----------------HELSCTGNKFHSCVFH 485
+ L +S R++S + + +
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249
Query: 486 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
LV + + + S H +S++ V+ + + + I+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 6/90 (6%), Positives = 24/90 (26%)
Query: 290 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 349
++ H ++ + + S ++ +++ + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
+ S++F D S + +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 6/193 (3%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
S G ++ +G +D ++W L HT I + R ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388
+R+WD EN + + + N
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWDANDYSRKFSY 279
Query: 389 CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYL 447
+ + + IL + EN +I ++ + ++ + +Q+ SV +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339
Query: 448 ASVSDELVRVWSI 460
A D + +
Sbjct: 340 AVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 324
F +L +G + + ++ S V + + + I V F + +A
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 325 ADRTVRVWD 333
D +
Sbjct: 343 KDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 425 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483
R L+GH V + C Y+ + + D+++RV+ + + +LS +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALK 60
Query: 484 FHP--TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 541
+ S ++ + + + S D +
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 542 KIWK 545
+WK
Sbjct: 121 HVWK 124
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 35/273 (12%), Positives = 73/273 (26%), Gaps = 49/273 (17%)
Query: 273 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 331
P + G + L + + VR + + S D T+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391
WD +GH+ + S + ++ + + + + IR W + NG + +
Sbjct: 186 WDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHT 243
Query: 392 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451
+ + AAA + + H N + S L S S
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS 301
Query: 452 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511
+ ++++ S G+ +H
Sbjct: 302 ENQFNIYNLRS---GKLVHA---------------------------------------- 318
Query: 512 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ + S+ +VA+ D +
Sbjct: 319 NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 79.3 bits (193), Expect = 8e-17
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 6/286 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 321
+ + S DGK L + + W + + H IT ++ + L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70
Query: 322 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381
T S D ++V + + L S + + I +S
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 382 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 441
+ + S + + + + + + + + + N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190
Query: 442 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501
+ S + V +S+ + + + + K + P L ++
Sbjct: 191 GAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 502 LWNM---TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+WNM +++ + AH + + SA D +K W
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 3e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 326
+SPD LATG D ++W + + H + + + + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 327 RTVRVWD 333
++ W+
Sbjct: 290 SNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 10/132 (7%), Positives = 33/132 (25%), Gaps = 3/132 (2%)
Query: 332 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 391
+ T+V + S + +
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225
Query: 392 GATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLAS 449
+ + P R+ +++N + + ++ + H + + + S
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285
Query: 450 VS-DELVRVWSI 460
D ++ W++
Sbjct: 286 AGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.5 bits (194), Expect = 8e-17
Identities = 34/317 (10%), Positives = 73/317 (23%), Gaps = 27/317 (8%)
Query: 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 312
Q+ A + P LL D ++ + L + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 313 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372
F + + + S + T + + +D L + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENYISILDVETQVCR 425
I N + + + + ++ R++ + + +
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183
Query: 426 LKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 468
E A S D V V
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243
Query: 469 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 528
+ + +S F P L G + WN+ K + A S + +
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303
Query: 529 NGMVASASHDKCVKIWK 545
+ ++ A+ D K
Sbjct: 304 DNILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 313
+ + A D + + + + + + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 314 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373
SP L T+ +D + W+ + ++ F + + S L + +++
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317
Query: 374 RYWSIN 379
+I+
Sbjct: 318 TNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.004
Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 20/155 (12%)
Query: 325 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382
+ V+ + D +G + + P +++ + + ++
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 383 CAGVFKCQSGATQMR----------------FQPRLGRILAAAIENYISILDVETQVCRL 426
+ R F PR + A + IS +++T+
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
Query: 427 KLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 460
N+ V S L SD+ + +
Sbjct: 288 NFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.2 bits (193), Expect = 9e-17
Identities = 37/312 (11%), Positives = 86/312 (27%), Gaps = 26/312 (8%)
Query: 260 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 314
P++ + + P +A V ++ V + +T V+FS
Sbjct: 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 315 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 364
P L + V VW S F + + + + + +
Sbjct: 73 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132
Query: 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424
++ + S ++G+ G S + + + + + S++ +
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192
Query: 425 RLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 479
+ + V V ++ ++ S +
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252
Query: 480 HSCVFHPTFPSLLVIGCYE--TLELWNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVA 533
S T+ +W++T +K TL + +T NG +
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312
Query: 534 SASHDKCVKIWK 545
S S D + ++
Sbjct: 313 SLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 1e-06
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 375
+ AT AD T+RVWD ++ +T + + + + S + + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 376 WSI 378
+ +
Sbjct: 323 YEL 325
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 76.9 bits (187), Expect = 4e-16
Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 13/301 (4%)
Query: 256 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 314
F +P + +P G + + S T EH+ T + S
Sbjct: 9 FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Query: 315 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373
PS A+ VR+WDT + L+T S V + + + + +
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127
Query: 374 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 433
+ + + + + R + + + +
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187
Query: 434 QVHSVCWN----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489
V + ++ D + +++ G+K + S VF T+
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247
Query: 490 ---SLLVIGCYE-TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKI 543
+ + + T+++WN+ K T+ ++ L + S S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 544 W 544
Sbjct: 308 V 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 7e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 327
+SPDG +A+ DK +W + V+ T+ T+ + + L + SA+
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 328 TVRVWDTE 335
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (172), Expect = 3e-14
Identities = 34/289 (11%), Positives = 80/289 (27%), Gaps = 54/289 (18%)
Query: 300 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359
T+ H + IT + +P L + S D + W + + HS ++SLD +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57
Query: 360 KEDLLCSCDNNSEIRYWSINNGS--------------------------------CAGVF 387
+E S D+ ++ + +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117
Query: 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 447
+ S + + + + +V + + + + S Y+
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 448 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--------- 498
A+ + + + T + +
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 499 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545
+ ++++ + L+AH V++L T + S+ D C+K W
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 1e-08
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 290 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 349
+ + + +AT S D + ++ + P ++ H
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
V +L + L S ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 424
+ W+ + + + + +++ I I V+ +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 425 RLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 460
+K L HK+ V+++ W T ++S +D ++ W++
Sbjct: 250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.003
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 341 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384
L+T +GH+ + +L +P L S + I WS ++
Sbjct: 6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 71.7 bits (174), Expect = 3e-14
Identities = 23/318 (7%), Positives = 69/318 (21%), Gaps = 47/318 (14%)
Query: 271 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 328
+ + + + S TV + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 329 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----------E 372
+ D + + ++ S P +++ + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 432
+ +S +G A + Q+ I +DV+T + L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 433 -------------------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 466
+ + A+ + G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTG 240
Query: 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 526
+ + + + + G L +++ + K + + D +A
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300
Query: 527 TVNGMVASASHDKCVKIW 544
+ + ++
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
T + SP G ++ A + + + V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 323 SSADRTVRVWDTE 335
+ V++ +
Sbjct: 309 GGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 12/124 (9%), Positives = 28/124 (22%), Gaps = 3/124 (2%)
Query: 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
F D + AT + ++ + +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273
Query: 329 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388
+ +D + H T + F D L +++ ++ + K
Sbjct: 274 LAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
Query: 389 CQSG 392
G
Sbjct: 331 LPGG 334
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 71.0 bits (172), Expect = 5e-14
Identities = 25/299 (8%), Positives = 63/299 (21%), Gaps = 30/299 (10%)
Query: 271 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 327
FSP DG L+A + + + ++ +K I VR
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 328 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 387
+ ++D F + V ++ + + + + D +
Sbjct: 67 FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 388 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQGHKNQVHSV 438
++ T I + Q + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 439 CWNTSGEYLASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV 493
++ + L +S L + + + P +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 494 IGCYETLELWNMTENKT--------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ + L + + S A + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.0 bits (164), Expect = 6e-13
Identities = 23/305 (7%), Positives = 57/305 (18%), Gaps = 24/305 (7%)
Query: 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 320
++ D K+ G + L + T K+ E +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCDNNS 371
A + DR + + + +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 372 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR------ 425
I + + S F + + + D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 426 -LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH---- 480
+ + + +L ++ S + +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 481 -SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 539
V L +++ K + + ++ L S V D
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDG 336
Query: 540 CVKIW 544
+ +
Sbjct: 337 KIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)
Query: 252 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
+ + +S + + + + E +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320
Query: 312 RFSPSLSRLATSSADRTVRVWDTENPD 338
R S + D + + E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 19/250 (7%), Positives = 53/250 (21%), Gaps = 19/250 (7%)
Query: 311 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDN 369
FSP L + + D + + + +
Sbjct: 8 EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 370 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 429
+ + G + M + A I +D+ET + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 430 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------KGECIHELSCTGNKFHSC 482
+ + + + ++A +G I + + ++
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 483 VFHPTFPSLLVIGCYETLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVAS 534
F +L + + +K + + + +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 535 ASHDKCVKIW 544
+D
Sbjct: 245 GEYDLNDMYK 254
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 63.3 bits (152), Expect = 2e-11
Identities = 32/309 (10%), Positives = 72/309 (23%), Gaps = 44/309 (14%)
Query: 276 KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRL-ATSSADRTVRVW 332
+ K V+ TE V + + +P AT + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 333 DTENP----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-----------WS 377
D L T ++ P + L +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 378 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------- 430
S F+ T + + ++ + ++ + T V +Q
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 431 --------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475
+ + + + +G + E+
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIM 239
Query: 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 535
+ S +P G Y LE +++ +N ++ S+ ST V
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297
Query: 536 SHDKCVKIW 544
+ +
Sbjct: 298 GALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 16/193 (8%), Positives = 47/193 (24%), Gaps = 26/193 (13%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 304
+ ++ DG L G D + + ++
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196
Query: 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 364
+ ++ + D E + ++R S +P+K
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 365 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q 422
+ + + + + + + + ++ D ET +
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
Query: 423 VCRLKLQGHKNQV 435
++ L G+ +
Sbjct: 314 KGQVDLPGNASMS 326
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.2 bits (149), Expect = 5e-11
Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 65/260 (25%)
Query: 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 344
+ + H I V S + S D ++VWD + D + ++
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 404
H + +++ + L+ + + ++ ++ I +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------- 112
Query: 405 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 464
L K+ ++ W S + L
Sbjct: 113 ---------------------LDSDMKKHSFWALKWGASNDRL----------------- 134
Query: 465 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 524
H L T K + ++ + + + + +S+
Sbjct: 135 ---LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 525 ASTVNGMVASASHDKCVKIW 544
S G++A+ ++ V+I
Sbjct: 192 ISE-RGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 34/306 (11%), Positives = 73/306 (23%), Gaps = 43/306 (14%)
Query: 272 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSLSR------ 319
S + D +W + ++ ++ H + V ++ R
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80
Query: 320 -LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 378
+AT+S + + D + ++ D L +N + +
Sbjct: 81 LVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 379 NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 438
G L +E Q SV
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSL---------TLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 439 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH------------------ 480
+ G ++ V++ + + N +
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 481 --SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 538
+ T +L + + +L AH V SL+ + + SA D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310
Query: 539 KCVKIW 544
++ W
Sbjct: 311 GKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 28/198 (14%)
Query: 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-----TENPDYSLRTFTGHSTTVMS 353
+ +Q+ T V S +AT + TV++ + S + +S ++ S
Sbjct: 178 ESPMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 354 LDFHPSKEDLLCSCDNNSEIRY----------------WSINNGSCAGVFKCQSGATQMR 397
+ F P L + D+NS + ++ + G F S +
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 398 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV----HSVCWNTSGEYLASVSDE 453
F + +A + + DV+T+ L H + + + + G+ LA
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-- 354
Query: 454 LVRVWSIGSGSKGECIHE 471
+ V + G + +
Sbjct: 355 VFDVKFLKKGWRSGMGAD 372
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 322
+S V S F+ G+ L + G D K W ++ +TL H I ++
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 323 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376
S A V+D + R+ G E L C C + S IR++
Sbjct: 349 SLA--EPGVFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 264 SKVESCHFSPDGKLLATGGHDKKAVLWC----------------TESFTVKSTLEEHTQW 307
+ + S FSP G LLA T S H+ W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291
Query: 308 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 367
+ + F+ S L ++ D +R WD + + + T H + + + ++ S
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDSL 350
Query: 368 DNNSEIRYWSINNGSCAGVFK 388
+ G +G+
Sbjct: 351 AEPGVFDVKFLKKGWRSGMGA 371
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 59.8 bits (144), Expect = 3e-10
Identities = 28/298 (9%), Positives = 75/298 (25%), Gaps = 27/298 (9%)
Query: 271 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 328
D + T + L ++ +K+ L+ + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84
Query: 329 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384
V + D + ++ + + S + + +
Sbjct: 85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144
Query: 385 GVFKCQSGATQMRFQPRLGRILAAAI-------------ENYISILDVET-QVCRLKLQG 430
+ + + R+ A I ++D +
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204
Query: 431 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 490
+ +H + S Y + ++ ++ I +K + + TG + F
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVI--DTKEGKLVAIEDTGGQTPHPGRGANFVH 262
Query: 491 LLVIGCYETLELWN----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 544
+ T + + + + + + G + +H ++
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 54.4 bits (130), Expect = 1e-08
Identities = 36/304 (11%), Positives = 71/304 (23%), Gaps = 37/304 (12%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 320
V S G+ L G D K + + E E T
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 321 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379
A + + D E + + + T ++HP + ++
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 380 NGSCAGVFKCQSGATQMRFQPRLGR-------------ILAAAIENYISILDVETQVCRL 426
+ + R + AA ++ + +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242
Query: 427 KLQGHKNQVHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 480
++ Q G A+ V IG+ +G + K
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----AWKIL 297
Query: 481 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 540
SL + + L+ TL+ ++ S+A + + D
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDA-----TLNPEAEISGSVAVFDIK-AMTGDGSDPE 351
Query: 541 VKIW 544
K
Sbjct: 352 FKTL 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)
Query: 245 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 304
AE G+ +Q + + + V+ ++ + E
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298
Query: 305 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 359
I + S L A S+ D+T+ + D E+ + LR+ +
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 21/301 (6%), Positives = 68/301 (22%), Gaps = 35/301 (11%)
Query: 262 STSKVESCHFSPDGKLLAT----------GGHDKKAVLWCTESFTVKSTLEEHTQWITDV 311
+ + + DG +A G ++ + + +E V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 312 RFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 365
P + + + +T+ + D + F P+ D
Sbjct: 105 GTYPWM--TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 366 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 425
+ + + + + + + + + ++ +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220
Query: 426 LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 485
+ L + + G + +++ +
Sbjct: 221 IDLSSGDAKFLPAVEALT-------------EAERADGWRPGGWQQVAYHRALDRIYLLV 267
Query: 486 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI 543
+ + + + L + S+ S + A ++ DK + I
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
Query: 544 W 544
Sbjct: 328 H 328
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 48.3 bits (113), Expect = 9e-07
Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 8/269 (2%)
Query: 280 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 338
+ S V +T+ + SP +++ ++ V + DT +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 339 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 398
G S +++ + + +S + + + AG K +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 399 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 458
P ++ + + + + G + + + + +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 459 SIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD 517
I + + + V + T+ + + NK
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 518 KLVSSLAASTVNG--MVASASHDKCVKIW 544
+ +A + +G + + S V +
Sbjct: 244 PDPAGIAVTP-DGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.3 bits (87), Expect = 0.001
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 290 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 336
T + + + + + +P ++ S TV V DT
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.2 bits (84), Expect = 0.003
Identities = 25/244 (10%), Positives = 63/244 (25%), Gaps = 6/244 (2%)
Query: 271 FSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 329
SPDG + H + T + V +T+ + T+ A T+
Sbjct: 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98
Query: 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 389
V D ++ + + L P + L + + + + + +
Sbjct: 99 SVID--TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156
Query: 390 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLA 448
+ P ++ A ++ + + + +
Sbjct: 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216
Query: 449 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTE 507
+ D+ S+ + + G P + V + T+ + +
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 508 NKTL 511
N
Sbjct: 276 NTIT 279
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.7 bits (107), Expect = 1e-05
Identities = 16/187 (8%), Positives = 34/187 (18%), Gaps = 6/187 (3%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 320
V S G+ L G D + + + E E +
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSIN 379
+ + + TV + +HP + + + E
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183
Query: 380 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 439
G V + + ++
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243
Query: 440 WNTSGEY 446
G+
Sbjct: 244 LVDVGKT 250
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 28/277 (10%), Positives = 73/277 (26%), Gaps = 36/277 (12%)
Query: 248 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------------CTESF 295
+ E ++ + S S + + G + T
Sbjct: 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152
Query: 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSL 354
TV + + + S + + V + + ++ D T G + +
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212
Query: 355 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAI 410
+ S + + +N++++ + + + R P+ G + + +
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272
Query: 411 ENYISILDVETQVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS--------DE 453
SI + T LQG + + +L + +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332
Query: 454 LVRVWSIGSGSKGECI--HELSCTGNKFHSCVFHPTF 488
V V+ + + + + V P +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.002
Identities = 29/231 (12%), Positives = 54/231 (23%), Gaps = 21/231 (9%)
Query: 322 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 381
T + + D ++ ++ V S LL + I +
Sbjct: 37 TLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK 93
Query: 382 SCAGV--FKCQSGATQMRFQPRL---GRILAAA--IENYISILDVETQVCRLKLQGHKNQ 434
V K A + R A +I+D ET + +
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 494
V + ++ I S E I + TG ++ I
Sbjct: 154 VDTQTYHPEPR----------VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 495 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM-VASASHDKCVKIW 544
G L + ++A + + + A K
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.002
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 266 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 321
V S DG + G K ++ + L+ ++ P S L
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 322 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 367
+ ++V V+D +N P + V+ +++ +++ S
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383
Query: 368 -DNNSEIRYW 376
+++S +
Sbjct: 384 KNDSSALVVV 393
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.8 bits (102), Expect = 4e-05
Identities = 36/330 (10%), Positives = 74/330 (22%), Gaps = 48/330 (14%)
Query: 260 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITD 310
AS + L A + + C
Sbjct: 16 AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75
Query: 311 VRF----SPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVM----SLDFHPSK 360
S S +R A V V+D P + +V + S
Sbjct: 76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 420
LL +S S+ S + K S + + S L
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195
Query: 421 T----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG 476
V + N G + +V+ + I + +
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNE 253
Query: 477 NKFHSCVFHPTFPSLLVIGC-------------------YETLELWNMTENKTLTLSAHD 517
+ + F ++ E + +T ++
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313
Query: 518 KLVSSLAASTVNG---MVASASHDKCVKIW 544
++ A+ +G A+++ + + I+
Sbjct: 314 HDSDAIIAAQ-DGASDNYANSAGTEVLDIY 342
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)
Query: 322 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380
S + + VW+ +L V + P K L + + I
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 381 GSCAGVF 387
A F
Sbjct: 69 DDGALTF 75
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.98 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.46 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.4 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.38 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.29 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.12 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.11 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.11 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.83 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.74 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.65 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.63 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.44 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.43 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.42 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.13 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.11 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.08 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.95 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.85 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.7 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.65 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.63 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.57 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.56 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.5 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.42 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.24 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.24 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.22 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.15 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.1 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.89 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.65 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.01 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.7 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.43 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.33 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.3 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.16 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.07 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.85 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 88.24 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 86.83 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 86.75 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 85.84 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 84.38 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 80.35 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-41 Score=331.81 Aligned_cols=285 Identities=25% Similarity=0.475 Sum_probs=263.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 009059 256 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 335 (545)
Q Consensus 256 ~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~ 335 (545)
..+|+||.+.|++|+|+|++++||+|+.||+|+|||+++++.+.++.+|...|.+++|++++.+++++..++.+.+|+..
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECCCeE
Q 009059 336 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 414 (545)
Q Consensus 336 ~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~dg~I 414 (545)
.... ...+.+|...+.++.|++++..+ ++++.|+.+++||+++++.+..+.. ...+.+++|++++..+++++.|+.|
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 90 GFEC-IRTMHGHDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp SSCE-EECCCCCSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccc-ccccccccccceeeeccCCCceE-EeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 7664 67778899999999999997654 5888999999999999998888764 4568999999999999999999999
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCC--------------------CEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--------------------EYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g--------------------~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
++|++.++.....+.+|...+.++.|+|++ .++++++ |+.|++||+.++ .++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~ 244 (317)
T d1vyhc1 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV 244 (317)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEe
Confidence 999999999999999999999999998753 4677888 999999999887 7888999
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.|...|.+++|+|++++|++++.|+.|++||+.+++++ .+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus 245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999999999999999999998877 7889999999999999999999999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.2e-41 Score=334.10 Aligned_cols=285 Identities=16% Similarity=0.235 Sum_probs=251.1
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE-----EEEeccCCccEEEEEEcCCCCEEEEEeCCC
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSSADR 327 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~-----~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg 327 (545)
.+.+..+ .|...|+|++|+|+|++||+|+ ||.|+|||+.+... .....+|.+.|.+++|+|++++|++|+.||
T Consensus 42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence 3445555 7999999999999999999987 89999999876432 233467999999999999999999999999
Q ss_pred eEEEEECCCCCe-eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEE
Q 009059 328 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRI 405 (545)
Q Consensus 328 ~I~vwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l 405 (545)
.|++||+..... ....+..|...+.+++|+|++. ++++++.|+.|++|++.++++..... +...+.+++|++++..+
T Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~ 198 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999875443 3556778999999999999865 55688999999999999998877665 45679999999999999
Q ss_pred EEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE
Q 009059 406 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 484 (545)
Q Consensus 406 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~ 484 (545)
++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++ |+.|++||++... . .....|...|.+++|
T Consensus 199 ~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~~ 273 (337)
T d1gxra_ 199 WTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLKF 273 (337)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEEE
T ss_pred ccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---c-ccccccccccceEEE
Confidence 999999999999999999887775 889999999999999999988 9999999998763 2 355678899999999
Q ss_pred cCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 485 HPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 485 sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++++|++++.|+.|++||+.+++.+....|...|++++|+|++++||+|+.||+|+|||
T Consensus 274 s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999987778999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-40 Score=333.36 Aligned_cols=284 Identities=28% Similarity=0.443 Sum_probs=247.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec------------------cCCccEEEEEEcCCCCEE
Q 009059 259 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRL 320 (545)
Q Consensus 259 l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~------------------~h~~~V~~l~~sp~~~~l 320 (545)
..+|++.|+||+|+|||++||+|+ |+.|+|||+.+++.+..+. .|...|++++|+|++++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 346999999999999999999986 8999999999988876654 466779999999999999
Q ss_pred EEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeC
Q 009059 321 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 400 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp 400 (545)
++|+.||.|++||...+.. +..+.+|...|.+++|++++.. +++++.++.|++||+.+...............+.+.+
T Consensus 137 ~s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 214 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214 (388)
T ss_dssp EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred eeccccccccccccccccc-cccccccccccccccccccccc-ccccccceeeeeeeccccccccccccccccccccccC
Confidence 9999999999999998764 7888899999999999998654 4588889999999999999888888878877777776
Q ss_pred -CCCEEEEEECCCeEEEEECCCCEEEEEe-------cCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC------
Q 009059 401 -RLGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------ 465 (545)
Q Consensus 401 -~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~------ 465 (545)
++..|++++.|+.|++||.+++.....+ .+|...|.+++|+|++.+|++++ |+.|++||+.....
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence 6678888999999999999998776654 35788999999999999999999 99999999976532
Q ss_pred ---cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEE------eCCCCEEEEE
Q 009059 466 ---GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASA 535 (545)
Q Consensus 466 ---~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~------spd~~~las~ 535 (545)
..+......|...|.+++|+|++++|++++.|+.|++||+.+++++ .+.+|.+.|.++++ +|++.+||||
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence 2345556678899999999999999999999999999999999988 78899999999975 6788999999
Q ss_pred eCCCcEEEcC
Q 009059 536 SHDKCVKIWK 545 (545)
Q Consensus 536 s~Dg~I~iWd 545 (545)
+.||+|+|||
T Consensus 375 s~Dg~I~iW~ 384 (388)
T d1erja_ 375 SGDCKARIWK 384 (388)
T ss_dssp ETTSEEEEEE
T ss_pred eCCCEEEEEe
Confidence 9999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-39 Score=321.59 Aligned_cols=286 Identities=19% Similarity=0.363 Sum_probs=252.9
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..++|+||.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|+.+++|+.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEEC
Q 009059 335 ENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 335 ~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~ 410 (545)
..... ....+.+|............ ..+.....+.....+............ ....+....+.+....+++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence 75432 24566778877777766654 345577778999999988766655444 4456888899999999999999
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE--eeCCCceEEEEEcCC
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPT 487 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~--~~~~~~v~~~~~sp~ 487 (545)
|+.|++||+++++.+..+.+|...|++++|+|++.+|++++ |+.|++||+... ..+..+ ..+...+.+++|+|+
T Consensus 205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECSS
T ss_pred CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEECCC
Confidence 99999999999999999999999999999999999999999 999999999876 444443 345677999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+++|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++++||+|+.||.|+|||
T Consensus 282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999999888 7889999999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-38 Score=312.15 Aligned_cols=281 Identities=17% Similarity=0.220 Sum_probs=239.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 340 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~ 340 (545)
.+.+.+.+++++|+|+.||.++ ++.|.+|++++++....+.+|...|++++|+|++++||+|+.||+|+|||+.+....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4556777899999999999986 668999999999999999999999999999999999999999999999999887653
Q ss_pred e-eEeccCcccEEEEEEeCCCCcEEEEEc-CCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCE-EEEEECCCeEEE
Q 009059 341 L-RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAAAIENYISI 416 (545)
Q Consensus 341 ~-~~~~~h~~~V~~l~~~p~~~~ll~s~s-~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~-l~~~~~dg~I~i 416 (545)
. ..+..|...|.+++|+|++..+++.+. .+..+++|++++++....+.. ...|.+++|+|++.+ +++++.|+.|++
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i 173 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 3 467889999999999999876654332 356799999999988877764 456999999999886 667888999999
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe-------eCCCceEEEEEcCCC
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCVFHPTF 488 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~-------~~~~~v~~~~~sp~~ 488 (545)
||+++++....+..|...|+++.|+|++++|++++ |+.|++||+.++ ..+..+. +|...|.+++|+|++
T Consensus 174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccccCccccccccccccccccccccccc---cccccccccccccccccccccccccCCCC
Confidence 99999999999999999999999999999999998 999999999876 3444433 467889999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEE-EeccCCC-CeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~-~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++|++++.|+.|+|||+++++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd 309 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence 99999999999999999999988 5554433 233344455567899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.5e-38 Score=307.59 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=234.0
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 255 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 255 ~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
..+++.||.+.|++|+|+||+++||+|+.||.|++||+++++.+..+ ..|...|++++|+|++. +++++.|+.+++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence 46789999999999999999999999999999999999999988887 47999999999999986 55666899999999
Q ss_pred CCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECC
Q 009059 334 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 334 ~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 411 (545)
...... .......+...+.+++|++++..++ ++. ++.+++|+... .........+.+++|+|++..+++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCcccccccccccccccccccccccccccccc-ccc-ccccccccccc---cccccccccccccccccccccccccccc
Confidence 875432 1223345778899999999986554 443 67899999542 3334445678899999999999999999
Q ss_pred CeEEEEECCCCEEEE-EecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 412 NYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 412 g~I~i~d~~~~~~~~-~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
+.|++||++++.... ....|...|++++|+|++.+|++++ |+.|++||+.++........+..|...|.+++|+|+++
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 237 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999876543 3456899999999999999999998 99999999988754445556677889999999999999
Q ss_pred EEEEEEcCCeEEEEeCCCCeEE---EeccC-CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTL---TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~---~~~~h-~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++++.|+.|++||++++... ....| ...|.++.| +++++|++++.||.|+|||
T Consensus 238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999876433 33344 455666655 5678999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-37 Score=312.26 Aligned_cols=279 Identities=16% Similarity=0.198 Sum_probs=231.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCe--EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe
Q 009059 262 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 339 (545)
Q Consensus 262 H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~--~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~ 339 (545)
+.++|+|++|+|||++||+|+.|+.|+|||..+++ .+..+.+|.+.|.+|+|+|++++|++|+.|++|+|||+.+...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 34789999999999999999999999999998765 5677899999999999999999999999999999999987653
Q ss_pred -eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe-----ccCCeeEEEEeCCCCEEEEEECCCe
Q 009059 340 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENY 413 (545)
Q Consensus 340 -~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~~~~~dg~ 413 (545)
....+.+|...|.+++|+|++. .+++++.|+.|++|++.......... +...+.+++|+|++.+|++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 2345678899999999999975 55588899999999987665433222 3456999999999999999999999
Q ss_pred EEEEECCC------------------CEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee
Q 009059 414 ISILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 474 (545)
Q Consensus 414 I~i~d~~~------------------~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~ 474 (545)
|++||... +..+.....|...|.+++|+|++++|++++ |+.|++||+.++ ..+..+..
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~ 241 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS 241 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence 99999754 235667778999999999999999999999 999999999877 77888899
Q ss_pred CCCceEEEEEcCCCCEEEEEEcCCeEEEE--eCCCCeEEE----------------------------------------
Q 009059 475 TGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLT---------------------------------------- 512 (545)
Q Consensus 475 ~~~~v~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~~---------------------------------------- 512 (545)
|..+|.+++|+|++.+|+ ++.|+.+++| +...+....
T Consensus 242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred ccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence 999999999999997555 5667765555 433222110
Q ss_pred eccCCCCeeEEEEeCCC----CEEEEEeCCCcEEEcC
Q 009059 513 LSAHDKLVSSLAASTVN----GMVASASHDKCVKIWK 545 (545)
Q Consensus 513 ~~~h~~~V~~l~~spd~----~~las~s~Dg~I~iWd 545 (545)
...|.+.|+++++.+.+ ..|+|++.||.|+|||
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 01388899999998755 3699999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.1e-36 Score=293.85 Aligned_cols=259 Identities=16% Similarity=0.226 Sum_probs=221.8
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcCCCC
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLS 318 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp~~~ 318 (545)
.+.+|+..++. ....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+.+. ...+..|...|.+++|+|+++
T Consensus 39 ~v~i~~~~~~~---~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 115 (311)
T d1nr0a1 39 SVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115 (311)
T ss_dssp EEEEEETTCSS---CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred EEEEEECCCCc---eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence 45677776654 3456789999999999999999999999999999999987654 356788999999999999999
Q ss_pred EEEEEeC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeE
Q 009059 319 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ 395 (545)
Q Consensus 319 ~l~t~s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~ 395 (545)
+|++++. +..++||++++++. ...+.+|...|.+++|+|+++.++++|+.|+.|++||+++++....+.. ...+.+
T Consensus 116 ~l~~~~~~~~~~~~v~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~ 194 (311)
T d1nr0a1 116 RIAAVGEGRERFGHVFLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194 (311)
T ss_dssp EEEEEECCSSCSEEEEETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccceeeecccccccccccccccccccccccccccccccc
Confidence 9999986 45699999998764 7788999999999999999988888999999999999999988887764 567999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec-------CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcc
Q 009059 396 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 467 (545)
Q Consensus 396 l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-------~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~ 467 (545)
+.|+|++.++++++.|+.|++||+.++.....+. +|...|++++|+|++++|++++ |+.|+|||++++ .
T Consensus 195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~ 271 (311)
T d1nr0a1 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---K 271 (311)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---E
T ss_pred cccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---c
Confidence 9999999999999999999999999988777654 4788999999999999999999 999999999887 6
Q ss_pred eEEEEeeCCC-ceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 468 CIHELSCTGN-KFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 468 ~i~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
++.++..+.. ....+.+.+++..|++++.||.|++||.+
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 7777765543 22333444455679999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-35 Score=292.99 Aligned_cols=260 Identities=17% Similarity=0.268 Sum_probs=229.3
Q ss_pred cceeeeeecCCceeeE--EEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CeEEEEeccCCccEEEEEEc
Q 009059 239 DRVGRSAEVGKGFTFT--EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFS 314 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~--~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~--~~~~~~l~~h~~~V~~l~~s 314 (545)
|..+++|++.++.... ......+|.+.|.+|+|+||+++|++|+.|+.|++||+.. .+....+..|...|.+++|+
T Consensus 71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence 4568889887654333 2334568999999999999999999999999999999874 45667788999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCee
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT 394 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~ 394 (545)
|++.+|++++.|+.|++|++.+++. ......|...|.+++|++++. .+++++.|+.|++||+++++.+..+.+...+.
T Consensus 151 ~~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~ 228 (337)
T d1gxra_ 151 PDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228 (337)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccceeecccccccceE
Confidence 9999999999999999999998764 777888999999999999975 45588889999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 395 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+++|+|++..+++++.|+.|++||++++.... ...|...|++++|+|++++|++++ |+.|++||+.++ ..+..+
T Consensus 229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~- 303 (337)
T d1gxra_ 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQS- 303 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE-
T ss_pred EEEEcccccccceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEc-
Confidence 99999999999999999999999999887654 556999999999999999999998 999999999887 555554
Q ss_pred eCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 474 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 474 ~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.|...|.+++|+|++++|++++.|+.|+|||+
T Consensus 304 ~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 47789999999999999999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-34 Score=281.32 Aligned_cols=283 Identities=18% Similarity=0.306 Sum_probs=220.2
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
++..++|+||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++ +|++++.|+.+++|
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW 82 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence 3456789999999865 36668999999999999999999999999999999999999999875 99999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEE--------------------------------------EeCCCCcEEEEEcCCCcEE
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLD--------------------------------------FHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~--------------------------------------~~p~~~~ll~s~s~dg~I~ 374 (545)
+...... ......+...+.... +.+.. .+++.++.|+.|+
T Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 83 NAETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVK 160 (342)
T ss_dssp ETTTTEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS-SCEEEEETTSCEE
T ss_pred ccccccc-eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc-ceeeeecCCCeEE
Confidence 9875442 221111111111111 11122 2344677788888
Q ss_pred EEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC
Q 009059 375 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE 453 (545)
Q Consensus 375 lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg 453 (545)
+||+....++..+..+ ......+.+++..+++++.||.|++||++.++.+..+.+|...+.++.+++ ++|++++ |+
T Consensus 161 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~ 237 (342)
T d2ovrb2 161 VWDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADS 237 (342)
T ss_dssp EEEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTS
T ss_pred EeecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCC
Confidence 8888877777666543 234455566778999999999999999999999999999999999988764 6889888 99
Q ss_pred cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Ee-----ccCCCCeeEEEEeC
Q 009059 454 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAAST 527 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~-----~~h~~~V~~l~~sp 527 (545)
.|++||+........+.....|...+.++.++ +.++++++.||.|++||+++++.+ .+ .+|...|++++|+|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence 99999998874322222223345566666665 468999999999999999999877 33 25788899999999
Q ss_pred CCCEEEEEeCCCc----EEEcC
Q 009059 528 VNGMVASASHDKC----VKIWK 545 (545)
Q Consensus 528 d~~~las~s~Dg~----I~iWd 545 (545)
++.+||+|+.||+ |++||
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCEEEEEeCCCCCeeEEEEEe
Confidence 9999999999986 89986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-33 Score=276.13 Aligned_cols=278 Identities=16% Similarity=0.269 Sum_probs=222.1
Q ss_pred EEeecCCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 009059 256 FQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 334 (545)
Q Consensus 256 ~~~l~~H~~~V-~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~ 334 (545)
..+|+||.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|.+.|++|+|+++ .+|++|+.|++|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 56799999886 56555 6789999999999999999999999999999999999999985 58999999999999999
Q ss_pred CCCCeeeeEec--cCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc----------------------
Q 009059 335 ENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------------------- 390 (545)
Q Consensus 335 ~~~~~~~~~~~--~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~---------------------- 390 (545)
..... ..... .+...+....+.+++ .++++++.|+.|++||+.+..........
T Consensus 82 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 82 KKGCC-THVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTTEE-EEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred ccccc-cccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 97664 33332 233345556667775 45668899999999999876544322110
Q ss_pred CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE
Q 009059 391 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 391 ~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i 469 (545)
.......+.+++..++++..|+.|++||+++++.+....++...+.++.|++++.++++++ |+.|++||+.++ ..+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~ 236 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELM 236 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---ccc
Confidence 0112234566778999999999999999999999999999999999999999999999999 999999999887 778
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEE-EEeCCCCEEEEEeCCCcEEEcC
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l-~~spd~~~las~s~Dg~I~iWd 545 (545)
..+..|...|.++.+++ ++|++++.|+.|++||+.+..... ..|...+.++ .+++++.+|++| .||.|+|||
T Consensus 237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd 309 (355)
T d1nexb2 237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN 309 (355)
T ss_dssp EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred ccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence 88999999999999975 579999999999999999886553 3455555555 567777777666 589999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-33 Score=269.70 Aligned_cols=259 Identities=24% Similarity=0.472 Sum_probs=234.7
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
.|..+++|+..++.. +..+.+|.+.|.+++|+|++.+++++..++.+.+|+....+....+..|...+.++.|++++
T Consensus 37 ~Dg~i~iWd~~~~~~---~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (317)
T d1vyhc1 37 EDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113 (317)
T ss_dssp SSSCEEEEETTTCCC---CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCCE---EEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCC
Confidence 367889999888754 56778999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEE
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM 396 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l 396 (545)
..+++++.|+.+++||+.++.. +..+.+|...+.+++|++++. ++++++.|+.|++|++.+++....+.. ...+.++
T Consensus 114 ~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~ 191 (317)
T d1vyhc1 114 DHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191 (317)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence 9999999999999999998775 788899999999999999965 566999999999999999988877753 3457777
Q ss_pred EEeCCC--------------------CEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcE
Q 009059 397 RFQPRL--------------------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 455 (545)
Q Consensus 397 ~~sp~~--------------------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I 455 (545)
.|.|+. ..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++ ||.|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 271 (317)
T d1vyhc1 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271 (317)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence 776653 4688899999999999999999999999999999999999999999998 9999
Q ss_pred EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 456 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 456 ~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
++||+.++ +++..+..|...|++++|+|++++|++++.|+.|+|||
T Consensus 272 ~iwd~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 272 RVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999887 66788889999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.3e-33 Score=278.65 Aligned_cols=263 Identities=23% Similarity=0.384 Sum_probs=220.4
Q ss_pred cceeeeeecCCceeeEEE---------------EeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc
Q 009059 239 DRVGRSAEVGKGFTFTEF---------------QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 303 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~---------------~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~ 303 (545)
|..+++|+..++.....+ ....+|...|++++|+|++++|++|+.||.|++||...++.+..+.+
T Consensus 82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~ 161 (388)
T d1erja_ 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161 (388)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccc
Confidence 456788887776544332 22346888899999999999999999999999999999999999999
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce
Q 009059 304 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 383 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~ 383 (545)
|...|.+++|++++..+++++.++.|++||+.+... ..... +.....++.+.+....++++++.|+.|++||+.++..
T Consensus 162 h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 239 (388)
T d1erja_ 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239 (388)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred ccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence 999999999999999999999999999999997654 44444 4445666667765567888999999999999999887
Q ss_pred eeEEe--------ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE------------EEEEecCCCCCEEEEEEcCC
Q 009059 384 AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV------------CRLKLQGHKNQVHSVCWNTS 443 (545)
Q Consensus 384 ~~~~~--------~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~------------~~~~~~~h~~~I~~l~~sp~ 443 (545)
...+. +...|.+++|+|++..|++++.|+.|++||++++. .......|...|.+++|+|+
T Consensus 240 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 319 (388)
T d1erja_ 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319 (388)
T ss_dssp EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG
T ss_pred ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC
Confidence 76654 34569999999999999999999999999997643 23445668899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE------cCCCCEEEEEEcCCeEEEEeCC
Q 009059 444 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF------HPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 444 g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~------sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
+++|++++ ||.|++||+.++ +++.++.+|...|.++++ +|++.+|++++.|+.|+|||++
T Consensus 320 ~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 320 DEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp GCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999 999999999887 788899999999999975 6788999999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-32 Score=272.83 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=233.4
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEEEEEEc
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFS 314 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~~l~~s 314 (545)
+.|..+++||..++. .+..+.+|.+.|++++|+|+ .+|++|+.|+.|++|+....+....... +...+..+.+.
T Consensus 30 s~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (355)
T d1nexb2 30 ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105 (355)
T ss_dssp ETTTEEEEEETTTTE---EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE
T ss_pred eCCCeEEEEECCCCc---EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccc
Confidence 346789999998875 46778899999999999986 4899999999999999999887766644 33445667788
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCee----------------------eeEeccCcccEEEEEEeCCCCcEEEEEcCCCc
Q 009059 315 PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
+++.++++++.|+.|++||+...... ......|...+...... + .+++++..|+.
T Consensus 106 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~d~~ 182 (355)
T d1nexb2 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G-NIVVSGSYDNT 182 (355)
T ss_dssp TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE--T-TEEEEEETTSC
T ss_pred cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccc--c-ceeeeecccce
Confidence 89999999999999999999764321 11222344445544443 3 46668889999
Q ss_pred EEEEECCCCceeeEEe-ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 373 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
|++||+.+++.+.... ....+.++.|++++..+++++.|+.|++||++++..+..+.+|...|.+++|+ +++|++++
T Consensus 183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~ 260 (355)
T d1nexb2 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 260 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEEC
T ss_pred eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeee
Confidence 9999999998887765 44568899999999999999999999999999999999999999999999986 46889888
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEE-EEcCCCCEEEEEEcCCeEEEEeCCCCeEE--EeccCCCCeeEEEEeC
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST 527 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~-~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp 527 (545)
|+.|++||+.+.. . .+..|...+..+ .+++++. +++++.|+.|+|||+++++++ .+.+|...|++++|+|
T Consensus 261 ~dg~i~iwd~~~~~---~--~~~~~~~~~~~~~~~~~~~~-~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~ 334 (355)
T d1nexb2 261 ADGSIRGWDANDYS---R--KFSYHHTNLSAITTFYVSDN-ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334 (355)
T ss_dssp TTSEEEEEETTTCC---E--EEEEECTTCCCCCEEEECSS-EEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred cccccccccccccc---e--ecccccCCceEEEEEcCCCC-EEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence 9999999998763 2 334455566555 4566666 555567999999999999887 4568999999999998
Q ss_pred CCCEEEEEeCCCcEEEc
Q 009059 528 VNGMVASASHDKCVKIW 544 (545)
Q Consensus 528 d~~~las~s~Dg~I~iW 544 (545)
+ .+|++++.||.++||
T Consensus 335 ~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 335 K-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp T-EEEEEEESSSCEEEE
T ss_pred C-eEEEEEECCCcEEEE
Confidence 6 578889999997776
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-31 Score=257.20 Aligned_cols=274 Identities=20% Similarity=0.388 Sum_probs=221.0
Q ss_pred eEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 253 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 253 ~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
+..+.....|...|+|++| |+++||+|+.||+|+|||+.+++++.++.+|...|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 3456777889999999765 7899999999999999999999999999999999999988 57799999999999999
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEEEEeCCCCEEEEE
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~~~ 408 (545)
++..+.. ......+...... +.+... .++++..++.+++|++.......... +...+..+.+.+ ..++++
T Consensus 81 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 154 (293)
T d1p22a2 81 DVNTGEM-LNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA 154 (293)
T ss_dssp ESSSCCE-EEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred ccccccc-ccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence 9998765 4444434333333 333333 45588889999999998765433222 233455555554 678889
Q ss_pred ECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 409 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
+.|+.|++||+++++.+..+.++...+..+.++ +.++++++ |+.|++||+++. ..+.....+...+.. +.++
T Consensus 155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~ 227 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFD 227 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECC
T ss_pred cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--cccc
Confidence 999999999999999999999999999888875 56788888 999999999877 667777777777764 5667
Q ss_pred CCEEEEEEcCCeEEEEeCCC---------CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 488 FPSLLVIGCYETLELWNMTE---------NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 488 ~~~l~~~~~dg~I~iwd~~~---------~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.+|++++.|+.|++||+.. ...+ .+.+|.+.|++++|+ +.+|+||+.||+|+|||
T Consensus 228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 88999999999999999743 2233 778999999999984 67899999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-32 Score=269.77 Aligned_cols=278 Identities=14% Similarity=0.185 Sum_probs=220.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-cEEEEEcCC--CeEEEEeccC-CccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCC
Q 009059 265 KVESCHFSPDGKLLATGGHDK-KAVLWCTES--FTVKSTLEEH-TQWITDVRFSP--SLSRLATSSADRTVRVWDTENPD 338 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg-~I~lwd~~~--~~~~~~l~~h-~~~V~~l~~sp--~~~~l~t~s~dg~I~vwd~~~~~ 338 (545)
.+++++|+|+++.||.++.+. .|+.|+... ...+..+.+| ...|++++|+| ++.+|++|+.||+|+|||+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 567899999999999887553 355666543 2445667777 46899999998 57899999999999999987543
Q ss_pred ee-------eeEeccCcccEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEe-ccCCeeEEEEeCCCCE-EEEE
Q 009059 339 YS-------LRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR-ILAA 408 (545)
Q Consensus 339 ~~-------~~~~~~h~~~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~-~~~~v~~l~~sp~~~~-l~~~ 408 (545)
.. ...+..|.++|.+++|++++..+++++ +.++.+++|+..+++++..+. +...+.+++|+|++.. ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 21 123556889999999999988776544 357789999999999888876 4567999999998776 5678
Q ss_pred ECCCeEEEEECCCCEEEEEec---CCCCCEEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEE
Q 009059 409 AIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 483 (545)
Q Consensus 409 ~~dg~I~i~d~~~~~~~~~~~---~h~~~I~~l~~sp~-g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~ 483 (545)
+.|+.|++||.+..+....+. .|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+..|...+..+.
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCE
T ss_pred ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccccccccce
Confidence 889999999999887766654 46778999999996 68888888 999999999887 67888888877776555
Q ss_pred Ec---CCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCC--CeeEEEEeCC-CCEEEEEeCCCcEEEcC
Q 009059 484 FH---PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTV-NGMVASASHDKCVKIWK 545 (545)
Q Consensus 484 ~s---p~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spd-~~~las~s~Dg~I~iWd 545 (545)
|+ +++.+|++++.|+.|+|||+++++++ .+..|.. .+..+++.+. +.+|++++.||.|+|||
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 55 68899999999999999999999987 4444443 3444444433 34899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-32 Score=264.87 Aligned_cols=266 Identities=15% Similarity=0.214 Sum_probs=218.7
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
+.+++|+||.++|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|+++ ..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence 46889999999999999987 999999999999998763 3589999999999875 4689999999999998
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC-
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN- 412 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg- 412 (545)
+.... ....+..+.+++++ .+++++ .++.+.+|+..+++.+..+.....+ .++++++..+++++.++
T Consensus 74 ~~~~~--------~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~ 141 (287)
T d1pgua2 74 ITKHE--------FGSQPKVASANNDG-FTAVLT-NDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGN 141 (287)
T ss_dssp EEEEE--------CSSCEEEEEECSSS-EEEEEE-TTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTS
T ss_pred ccccc--------cccceeeeeeccCC-ceEEEe-ecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccc
Confidence 75421 23457788888875 444344 4677999999999999888866554 45667778888888865
Q ss_pred eEEEEECCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceE-EEEeeCCCceEEEEEcCC--
Q 009059 413 YISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPT-- 487 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i-~~~~~~~~~v~~~~~sp~-- 487 (545)
.|++|++........+. .|...+++++|+|++.+|++++ |+.|++||+.++ ... ..+..|...|.+++|+|.
T Consensus 142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~ 218 (287)
T d1pgua2 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEK 218 (287)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC-
T ss_pred eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeeccccc
Confidence 79999998776666554 4778999999999999999999 999999999876 333 245678899999999875
Q ss_pred --------CCEEEEEEcCCeEEEEeCCC-CeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 488 --------FPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 488 --------~~~l~~~~~dg~I~iwd~~~-~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+.+|++++.|+.|+|||+.. .+.+ .+.+|...|++++|+|++ .|++++.||.|+|||
T Consensus 219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence 46799999999999999976 4444 566899999999999986 689999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-32 Score=273.26 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=216.5
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE--EEEeccCCccEEEEEEcC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~--~~~l~~h~~~V~~l~~sp 315 (545)
.+..+++|+...+ .+..+..+++|.++|++|+|+|++++||+|+.|++|+|||+.++.. ...+.+|...|++++|+|
T Consensus 27 ~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 27 NNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105 (371)
T ss_dssp SSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred CCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence 3567899998765 3556788999999999999999999999999999999999987654 455678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCe---eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc----------
Q 009059 316 SLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------- 382 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~---~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~---------- 382 (545)
++++|++++.|++|++|+++.... .......|...|.+++|+|++. +|++|+.|+.|++||+....
T Consensus 106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred ccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccc
Confidence 999999999999999999876543 1334567889999999999975 55699999999999986532
Q ss_pred --------eeeEE-eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 009059 383 --------CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 453 (545)
Q Consensus 383 --------~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg 453 (545)
.+... .+...+.+++|+|++..+++++.|+.|++||+.++..+..+..|..+|.+++|+|++.+|++|.|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~ 264 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC 264 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCC
Confidence 11111 233458999999999999999999999999999999999999999999999999999999988888
Q ss_pred cEEEEEcCCCCCcce----------E--E--------------------------EEeeCCCceEEEEEcCCC----CEE
Q 009059 454 LVRVWSIGSGSKGEC----------I--H--------------------------ELSCTGNKFHSCVFHPTF----PSL 491 (545)
Q Consensus 454 ~I~vwd~~~~~~~~~----------i--~--------------------------~~~~~~~~v~~~~~sp~~----~~l 491 (545)
.+++|.......... . . ....|.+.|.++++.+.+ ..|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~ 344 (371)
T d1k8kc_ 265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 344 (371)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred ceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEE
Confidence 777766543211000 0 0 001267789999997754 358
Q ss_pred EEEEcCCeEEEEeCCC
Q 009059 492 LVIGCYETLELWNMTE 507 (545)
Q Consensus 492 ~~~~~dg~I~iwd~~~ 507 (545)
++++.||.|+|||+++
T Consensus 345 ~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 345 CTTGMDGGMSIWDVRS 360 (371)
T ss_dssp EEEETTSEEEEEEHHH
T ss_pred EEEcCCCeEEEEeCCc
Confidence 8999999999999854
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.3e-32 Score=264.95 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=218.2
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE---EEeccCCccEEEEEEcCC-CCEEEEEeCCCeE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTV 329 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~---~~l~~h~~~V~~l~~sp~-~~~l~t~s~dg~I 329 (545)
+.++.+++|.+.|++|+|+|++++||+|+.||+|+|||+++.... ....+|..+|.+++|+|+ +.+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 457788999999999999999999999999999999998765432 333469999999999986 4589999999999
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-------cCCeeEEEEeCCC
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL 402 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-------~~~v~~l~~sp~~ 402 (545)
++|++............+........+.++ ...+++++.++.+++||++.......... ......+.+.+.+
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 999998776533333333333444444444 45666889999999999875443332221 1234566778888
Q ss_pred CEEEEEECCCeEEEEECCCCEE---EEEecCCCCCEEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCc------ceEE-
Q 009059 403 GRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKG------ECIH- 470 (545)
Q Consensus 403 ~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp-~g~~l~s~s-dg~I~vwd~~~~~~~------~~i~- 470 (545)
..+++++.|+.|++||+..... ......+...+.+..+.+ ++..+++++ ||.+.+|++...... ....
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9999999999999999976532 233344555666666655 567888888 999999998654221 1111
Q ss_pred -----EEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 471 -----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 471 -----~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
....|...+++++|+|++++|++|+.||.|++||+.+++.+....+...+..++|+|++++|++|+.|+.+++|.
T Consensus 241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 112455678999999999999999999999999999999885444444566788899999999999998887763
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.2e-31 Score=255.81 Aligned_cols=241 Identities=17% Similarity=0.160 Sum_probs=198.7
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
|+..+.+.+|...|++|+|+|++++|++|+.||+|++||+.+++. +..+ .+|...|++++|+|++. ++ +++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSC-EE-EEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCCcEEEEEeeccce-ee-cccceeeE
Confidence 577889999999999999999999999999999999999998775 4554 57899999999999974 55 56679999
Q ss_pred EEEECCCCce----eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEE
Q 009059 374 RYWSINNGSC----AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 449 (545)
Q Consensus 374 ~lwd~~~~~~----~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s 449 (545)
++|++..... .........+..++|++++..+ +++.++.+.+|+.... .... ....+.+++|+|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGKL--TEVP--ISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTEE--EEEE--CSSCEEEEEECTTSCEEEE
T ss_pred EEeccCCccccccccccccccccccccccccccccc-cccccccccccccccc--cccc--ccccccccccccccccccc
Confidence 9999865432 1223445678899999996654 5556778999996533 2222 3457899999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE----EeccCCCCeeEEE
Q 009059 450 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLA 524 (545)
Q Consensus 450 ~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~~~V~~l~ 524 (545)
++ |+.|++||+.+... .......|...|.+++|+|++.+|++++.++.|++||+.++... .+.+|...|++++
T Consensus 154 g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp EETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 98 99999999987521 12234467889999999999999999999999999999887665 4557999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEcC
Q 009059 525 ASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 525 ~spd~~~las~s~Dg~I~iWd 545 (545)
|+|++++|++|+.||.|+|||
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccceEEEcCCCEEEEEE
Confidence 999999999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-30 Score=256.40 Aligned_cols=246 Identities=15% Similarity=0.242 Sum_probs=201.6
Q ss_pred EEEeecCC-CCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCeE--------EEEeccCCccEEEEEEcCCCCEEEEE
Q 009059 255 EFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTV--------KSTLEEHTQWITDVRFSPSLSRLATS 323 (545)
Q Consensus 255 ~~~~l~~H-~~~V~~l~~sp--dg~~latg~~dg~I~lwd~~~~~~--------~~~l~~h~~~V~~l~~sp~~~~l~t~ 323 (545)
.+..+.+| ...|++++|+| ++.+||+|+.||+|+|||+..++. ...+..|.++|.+++|++++++|+++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence 34566777 46899999998 678999999999999999865332 23355788999999999999999887
Q ss_pred eC--CCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe----ccCCeeEEE
Q 009059 324 SA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMR 397 (545)
Q Consensus 324 s~--dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~----~~~~v~~l~ 397 (545)
+. ++.+++|+.+++.. +..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+. +...+.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp ECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccccceEEEEeeccccc-ceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 65 67899999998764 788899999999999999988888899999999999998877666553 234589999
Q ss_pred EeCC-CCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEc---CCCCEEEEEe-CCcEEEEEcCCCCCcceEEEE
Q 009059 398 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVS-DELVRVWSIGSGSKGECIHEL 472 (545)
Q Consensus 398 ~sp~-~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~s---p~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~ 472 (545)
|+|+ +..+++++.|+.|++||+++++.+..+.+|...+.++.|+ +++++|++++ |+.|+|||++++ +++..+
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~ 289 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKW 289 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEE
Confidence 9997 5677888999999999999999999999888776655554 6899999998 999999999887 677777
Q ss_pred eeCCCc--eE--EEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 473 SCTGNK--FH--SCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 473 ~~~~~~--v~--~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
..+... +. ++.+.++ .+|++++.|+.|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 665544 33 3444443 46899999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.8e-30 Score=263.74 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=213.6
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeE------EEEeccCCccEEEEEE------cC-CCCEE
Q 009059 254 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRF------SP-SLSRL 320 (545)
Q Consensus 254 ~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~------~~~l~~h~~~V~~l~~------sp-~~~~l 320 (545)
......++|.+.|+++++++ ++|++++.|+.|+|||..+.+. ......|...+..+.+ .. ++.++
T Consensus 5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence 45677899999999999874 6999999999999999765432 2222334444433332 11 24578
Q ss_pred EEEeCCCeEEEEECCCCCeeee---------EeccCcccEEEEEEeCCC----CcEEEEEcCCCcEEEEECCCCc-----
Q 009059 321 ATSSADRTVRVWDTENPDYSLR---------TFTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS----- 382 (545)
Q Consensus 321 ~t~s~dg~I~vwd~~~~~~~~~---------~~~~h~~~V~~l~~~p~~----~~ll~s~s~dg~I~lwd~~~~~----- 382 (545)
++++.||.|++|++........ ....+...+..++|.++. ..++++++.||.+++|++....
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 8999999999999764332111 112345668888887764 2466788899999999975321
Q ss_pred ------ee----eEE----eccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe------cCCCCCEEEEEEcC
Q 009059 383 ------CA----GVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNT 442 (545)
Q Consensus 383 ------~~----~~~----~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~------~~h~~~I~~l~~sp 442 (545)
.. ... .....+.+++|+|++ ++++++.|+.|++||+++++.+..+ .+|...|.+++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 00 011 112347899999984 8899999999999999999877654 46889999999999
Q ss_pred CCCEEEEEe-CC---cEEEEEcCCCCCcceEEEE-------------eeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 443 SGEYLASVS-DE---LVRVWSIGSGSKGECIHEL-------------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 443 ~g~~l~s~s-dg---~I~vwd~~~~~~~~~i~~~-------------~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
+|++|++++ |+ .|++||+.++ .++..+ .+|...|++++|+|++++|++++.|++|+|||+
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~ 318 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred ccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence 999999998 66 4999999887 444444 368899999999999999999999999999999
Q ss_pred CCCeEE-EeccCCCC---------------------eeEEEEeCCC----------CEEEEEeCCCcEEEcC
Q 009059 506 TENKTL-TLSAHDKL---------------------VSSLAASTVN----------GMVASASHDKCVKIWK 545 (545)
Q Consensus 506 ~~~~~~-~~~~h~~~---------------------V~~l~~spd~----------~~las~s~Dg~I~iWd 545 (545)
.+++++ ++.+|... +.++.|.+.+ ..|++++.|+.|++|+
T Consensus 319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 999988 77777643 4556665532 3588999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=2.8e-29 Score=247.07 Aligned_cols=246 Identities=15% Similarity=0.249 Sum_probs=215.0
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.+..++|++|.+.|++|+|+|++++||+|+.||+|+|||+.++.. +..+..|...|.+++|+|++. ++++|+.|+.++
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~~i~ 122 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-EEEEECSCSCEEEEEECTTSS-EEEEEETTCCEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-EEEEecccccEEeeEeeccce-eeeeecccceee
Confidence 345678999999999999999999999999999999999998765 788899999999999999975 555888999999
Q ss_pred EEECCCCc----eeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 375 YWSINNGS----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 375 lwd~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
+|+..... ....+..+...........+..++....+.....++............+...+....+.+.+.+++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 99987543 23334444445555555556888899999999999999988888888889999999999999999999
Q ss_pred e-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEE---eccCCCCeeEEEEe
Q 009059 451 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---LSAHDKLVSSLAAS 526 (545)
Q Consensus 451 s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~---~~~h~~~V~~l~~s 526 (545)
. |+.|++||++++ .++..+..|...|.+++|+|++.+|++++.|+.|++||+....... ...|...|.+++|+
T Consensus 203 ~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 203 ACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp ETTTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred ecCceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 8 999999999887 7888899999999999999999999999999999999999988773 23667889999999
Q ss_pred CCCCEEEEEeCCCcEEEcC
Q 009059 527 TVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 527 pd~~~las~s~Dg~I~iWd 545 (545)
|++++|++|+.||.|+|||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SSSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCEEEEEE
Confidence 9999999999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=5.4e-29 Score=247.46 Aligned_cols=294 Identities=7% Similarity=-0.048 Sum_probs=227.5
Q ss_pred ceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCeEEEEeccCCccEEEEEEcCCC
Q 009059 240 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 317 (545)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg--~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~ 317 (545)
..+.+|+...+... .+ +|...|.+++|+|||++|++++.+. .|++||.++++.. .+..|...|.+++|+|++
T Consensus 24 g~v~v~d~~~~~~~----~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg 97 (360)
T d1k32a3 24 GQAFIQDVSGTYVL----KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG 97 (360)
T ss_dssp TEEEEECTTSSBEE----EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTS
T ss_pred CeEEEEECCCCcEE----Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccc
Confidence 35678888776532 22 7999999999999999998877553 7999999887655 567899999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEE---------cCCCcEEEEECCCCceeeEEe
Q 009059 318 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---------DNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 318 ~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~---------s~dg~I~lwd~~~~~~~~~~~ 388 (545)
++|++++.++.+++|++.++.. ...+..|...+.+++|+|++..++++. ..++.+++||+.+++......
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~ 176 (360)
T d1k32a3 98 KFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176 (360)
T ss_dssp SEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred cccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc
Confidence 9999999999999999998775 677888999999999999998777543 234579999999988877777
Q ss_pred ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCE-------EEEEecCCCCCEEEEEEcCCCCEEEEEe-CC---cEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRV 457 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~-------~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---~I~v 457 (545)
+...+..+.|+|++..|++++.++.+.+||..... ....+..|...+..+.|++++..++++. +. ..++
T Consensus 177 ~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 256 (360)
T d1k32a3 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256 (360)
T ss_dssp SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccce
Confidence 77788999999999999999999999999976543 2334445666666677888877766554 22 2334
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCC---CEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 534 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las 534 (545)
|.+.... .....+..+...+..+.+...+ .+++.++.++.|++||+.+++...+ .+.|.+++|+|||++|++
T Consensus 257 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~ 331 (360)
T d1k32a3 257 SPINVDP--GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMV 331 (360)
T ss_dssp EECSCCC--BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEE
T ss_pred eecccCc--CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEE
Confidence 4443221 1223344455556656655544 3567777888999999999876544 345899999999999999
Q ss_pred EeCCCcEEEcC
Q 009059 535 ASHDKCVKIWK 545 (545)
Q Consensus 535 ~s~Dg~I~iWd 545 (545)
++.||.|++||
T Consensus 332 ~~~Dg~i~v~d 342 (360)
T d1k32a3 332 RKDDGKIYTFP 342 (360)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.3e-27 Score=228.97 Aligned_cols=242 Identities=26% Similarity=0.466 Sum_probs=195.3
Q ss_pred EEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC
Q 009059 290 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 369 (545)
Q Consensus 290 wd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~ 369 (545)
|+..+.+....+++|.+.|.+ +++++|++||||+.||+|+|||+.+++. +..+.+|...|.+++|+++ ++++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~~~~---~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWSSQMRDN---IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-EEECCCCSSCEEEEEEETT---EEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCCCCEEEEEeCCC---cccccee
Confidence 666777888899999999865 3556789999999999999999998775 8899999999999999964 6779999
Q ss_pred CCcEEEEECCCCceeeEEeccC---------------------------------------CeeEEEEeCCCCEEEEEEC
Q 009059 370 NSEIRYWSINNGSCAGVFKCQS---------------------------------------GATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~~~~---------------------------------------~v~~l~~sp~~~~l~~~~~ 410 (545)
|+.+++|+.............. ......+......+++++.
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 155 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence 9999999987654332221110 0112233444567888999
Q ss_pred CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCC
Q 009059 411 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 489 (545)
Q Consensus 411 dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~ 489 (545)
++.|++||.+....+..+.+|...+..+.+ ++.+|++++ |+.|++||++.+ .++..+..|...+.++.+++ +
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~ 228 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N 228 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T
T ss_pred CCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C
Confidence 999999999999999999999887776665 678899998 999999999877 77888888999998887765 5
Q ss_pred EEEEEEcCCeEEEEeCCCCeEE-Eec---cCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 490 SLLVIGCYETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 490 ~l~~~~~dg~I~iwd~~~~~~~-~~~---~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+|++++.|+.|++||+...+.. .+. .|...+.++.++ ++++++|+.||.|+|||
T Consensus 229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 286 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEE
Confidence 8999999999999999988766 443 355666666664 67999999999999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.8e-27 Score=230.51 Aligned_cols=250 Identities=12% Similarity=0.090 Sum_probs=195.3
Q ss_pred eEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcE
Q 009059 296 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 373 (545)
Q Consensus 296 ~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I 373 (545)
+.+...++|.+.|++|+|+|++++||+|+.||+|+|||+..... .+....+|..+|.+++|+|++..++++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 56777889999999999999999999999999999999976543 2344457999999999999888889999999999
Q ss_pred EEEECCCCceeeEEeccC--CeeEEEEeCCCCEEEEEECCCeEEEEECCCC----EEEEEecCC--CCCEEEEEEcCCCC
Q 009059 374 RYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGH--KNQVHSVCWNTSGE 445 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~----~~~~~~~~h--~~~I~~l~~sp~g~ 445 (545)
++|++............. ......+.++...+++++.++.+++||++.. ........+ ......+.+.+.+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 999998877666554332 2445566777789999999999999998643 223333322 23445667778888
Q ss_pred EEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc-CCCCEEEEEEcCCeEEEEeCCCCeEE------------
Q 009059 446 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMTENKTL------------ 511 (545)
Q Consensus 446 ~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~I~iwd~~~~~~~------------ 511 (545)
.+++++ |+.|++||+..................+.++.+. .++..+++++.++.+.+|++......
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 888888 9999999998876555555555555666666655 46678999999999999987643211
Q ss_pred ----EeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 512 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 512 ----~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
....|...|++|+|+|++++||||+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD 279 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence 1134667899999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2e-26 Score=233.44 Aligned_cols=241 Identities=16% Similarity=0.168 Sum_probs=178.3
Q ss_pred EEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCe-----eeeEeccCcccEEEEE------EeCCCCcEEEEE
Q 009059 299 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----SLRTFTGHSTTVMSLD------FHPSKEDLLCSC 367 (545)
Q Consensus 299 ~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~-----~~~~~~~h~~~V~~l~------~~p~~~~ll~s~ 367 (545)
...++|...|.+|++++ ++|+|++.|++|+|||...... .......|...+..+. .......+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45689999999999864 6999999999999999765431 1122233444333222 222233577789
Q ss_pred cCCCcEEEEECCCCceeeEEe-----------ccCCeeEEEEeCC-----CCEEEEEECCCeEEEEECCCC---------
Q 009059 368 DNNSEIRYWSINNGSCAGVFK-----------CQSGATQMRFQPR-----LGRILAAAIENYISILDVETQ--------- 422 (545)
Q Consensus 368 s~dg~I~lwd~~~~~~~~~~~-----------~~~~v~~l~~sp~-----~~~l~~~~~dg~I~i~d~~~~--------- 422 (545)
+.||.|++|++........+. ....+..++|.++ +.++++++.||.+++|++...
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 999999999986543322111 1234667777765 356888999999999997421
Q ss_pred ------E---EEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEE------EEeeCCCceEEEEEcC
Q 009059 423 ------V---CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH------ELSCTGNKFHSCVFHP 486 (545)
Q Consensus 423 ------~---~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~------~~~~~~~~v~~~~~sp 486 (545)
. .......+...+.+++|+|++ +|++|+ |+.|+|||+.++ ..+. .+..|...|.+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~---~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc---ccccccccccccccccceEEEccccc
Confidence 0 111122355678999999998 788888 999999999887 3333 3456889999999999
Q ss_pred CCCEEEEEEcCC---eEEEEeCCCCeEE-Ee-------------ccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 487 TFPSLLVIGCYE---TLELWNMTENKTL-TL-------------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 487 ~~~~l~~~~~dg---~I~iwd~~~~~~~-~~-------------~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
++++|++++.|+ .|++||+.+++.+ .+ .+|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 999999999987 5999999988766 33 37999999999999999999999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.3e-25 Score=209.56 Aligned_cols=252 Identities=19% Similarity=0.363 Sum_probs=206.3
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
+.|..+++|+..++. .+.++++|.+.|++++| ++++|++|+.|+.|++|++..+........+..... .+.+.
T Consensus 32 s~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 104 (293)
T d1p22a2 32 LRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFN 104 (293)
T ss_dssp ESSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECC
T ss_pred eCCCeEEEEECCCCc---EEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--ccccc
Confidence 457789999988775 46778999999999987 578999999999999999999888877766555443 34456
Q ss_pred CCEEEEEeCCCeEEEEECCCCCe--eeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCe
Q 009059 317 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGA 393 (545)
Q Consensus 317 ~~~l~t~s~dg~I~vwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v 393 (545)
...++++..++.+++|+...... ....+..|...|..+.+.+. .+++++.|+.|++||+++++.+..+... ..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v 181 (293)
T d1p22a2 105 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181 (293)
T ss_dssp TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCCCceeeecCCCCcEEEEEccccccc
Confidence 67899999999999999986543 24456778889999888753 4568888999999999999988887643 345
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC------CCc
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG------SKG 466 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~------~~~ 466 (545)
..+.++ +..+++++.|+.|++||+++...+..+.+|...+.++ .+++.+|++++ |+.|++||+... ...
T Consensus 182 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 257 (293)
T d1p22a2 182 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257 (293)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred ccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec--cccceEEEEEcCCCEEEEEECCCCccccccCCc
Confidence 555555 4789999999999999999999999999998888764 46788999988 999999997542 223
Q ss_pred ceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEe
Q 009059 467 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 467 ~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd 504 (545)
.++..+..|...|.+++|+ +.+|++++.|++|+|||
T Consensus 258 ~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 258 LCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred eeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 5788889999999999995 45799999999999998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=6.3e-24 Score=205.09 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=215.5
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEE
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 356 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~ 356 (545)
.++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++. +..+..+. .+..+.|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence 345678899999999999999988754 4578999999999875 566789999999998764 66776655 5688999
Q ss_pred eCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCE
Q 009059 357 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQV 435 (545)
Q Consensus 357 ~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I 435 (545)
++++..+++++..++.+.+|+..+++....+.......++.|+|++..++++.. ++.+.+|+..+...+..+.. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCc
Confidence 999998998899999999999999999999998888999999999998876665 78899999999998888774 4568
Q ss_pred EEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC---CeEEEEeCCCCeE
Q 009059 436 HSVCWNTSGEYLASVS-D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKT 510 (545)
Q Consensus 436 ~~l~~sp~g~~l~s~s-d-g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~ 510 (545)
..+.++|++.+++++. + +.+.+|+.... ...... .....+..++|++++..+++++.+ +.|++||+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred eEEEeeccccceeeecccccccccccccce---eeeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 8999999999888887 4 47778877654 333333 345668889999999988877654 4799999999998
Q ss_pred EEeccCCCCeeEEEEeCCCCEE-EEEeCCCcEEEcC
Q 009059 511 LTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 545 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~spd~~~l-as~s~Dg~I~iWd 545 (545)
+....+...+.+++|+|||++| ++++.|+.|+|||
T Consensus 237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 8544556678999999999976 5777899999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.5e-24 Score=222.12 Aligned_cols=303 Identities=9% Similarity=0.015 Sum_probs=221.2
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEE-----eccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-----LEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~-----l~~h~~~V~~l~ 312 (545)
.+..+++||..++..+ .++..|. .+..++|||||++|++++.|+.|++||+.+++.... ..+|...+.+++
T Consensus 40 ~dg~v~vwD~~t~~~~---~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (426)
T d1hzua2 40 DAGQIALVDGDSKKIV---KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115 (426)
T ss_dssp TTTEEEEEETTTCSEE---EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred CCCEEEEEECCCCcEE---EEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeee
Confidence 4678999999988654 4566664 599999999999999999999999999998875432 236777788889
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEeccCc-----------ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 313 FSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHS-----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 313 ~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~-----------~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
|+|||++|+++ ..++.+++||..+... +..+..|. .....+.+++++..++.+....+.+.+++...
T Consensus 116 ~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 116 KGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred ecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 99999987554 5789999999998764 55544443 33455666666666665555566666666665
Q ss_pred Cce--eeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCC--CCCEEEEEEcCCC--CEEEEEe--
Q 009059 381 GSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG--EYLASVS-- 451 (545)
Q Consensus 381 ~~~--~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h--~~~I~~l~~sp~g--~~l~s~s-- 451 (545)
... +..+.....+..+.|+|++.+++++.. +..+.+++..+++.+...... ......+.+...+ ...+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence 543 234455566889999999999888875 678999999999887766532 2222333333332 2232222
Q ss_pred CCcEEEEEcCCCC----CcceEEEEeeCCCceEEEEEcCCCCEEEE-------EEcCCeEEEEeCCCCeEE-Ee------
Q 009059 452 DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV-------IGCYETLELWNMTENKTL-TL------ 513 (545)
Q Consensus 452 dg~I~vwd~~~~~----~~~~i~~~~~~~~~v~~~~~sp~~~~l~~-------~~~dg~I~iwd~~~~~~~-~~------ 513 (545)
|+.+.+|+..... .......+.+|...+..++|+|++++|++ +..+++|+|||+.+++.. ++
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~ 354 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred CceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchh
Confidence 6788888876532 23677889999999999999999999985 345679999999988654 22
Q ss_pred ---ccCCCCeeEEEEeCCCCEEEEE-----eCCCcEEEcC
Q 009059 514 ---SAHDKLVSSLAASTVNGMVASA-----SHDKCVKIWK 545 (545)
Q Consensus 514 ---~~h~~~V~~l~~spd~~~las~-----s~Dg~I~iWd 545 (545)
..|...|.+++|||||++|+.+ +.||.|+|||
T Consensus 355 ~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence 2456779999999999977443 3578899997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.5e-25 Score=212.05 Aligned_cols=246 Identities=10% Similarity=0.119 Sum_probs=194.2
Q ss_pred CcccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC
Q 009059 236 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 315 (545)
Q Consensus 236 ~~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp 315 (545)
.+.|..+++|+..++ ..+|...|.+++|++++ .+++++.|++|++|++...+ +...+.++.+.+
T Consensus 27 gs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~ 90 (287)
T d1pgua2 27 GSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANN 90 (287)
T ss_dssp EETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeecc
Confidence 345778889987754 35899999999999765 67889999999999975421 334578889998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe--ccCCe
Q 009059 316 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGA 393 (545)
Q Consensus 316 ~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~--~~~~v 393 (545)
++..++++ .++.+.+|+..++.. +..+.. ...+. ++++++..+++++..++.|++|++........+. +...+
T Consensus 91 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v 165 (287)
T d1pgua2 91 DGFTAVLT-NDDDLLILQSFTGDI-IKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 165 (287)
T ss_dssp SSEEEEEE-TTSEEEEEETTTCCE-EEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred CCceEEEe-ecccceeeeccceee-eeeccc-cceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence 88776665 566788999887664 555543 33444 4556666666566656689999998766555443 34669
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE-EecCCCCCEEEEEEcCC----------CCEEEEEe-CCcEEEEEcC
Q 009059 394 TQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTS----------GEYLASVS-DELVRVWSIG 461 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~I~~l~~sp~----------g~~l~s~s-dg~I~vwd~~ 461 (545)
.+++|+|++.+|++++.||.|++||+.++.... .+.+|...|.+++|+|. +.+|++++ |+.|+|||+.
T Consensus 166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 999999999999999999999999999988765 46779999999999874 46899998 9999999997
Q ss_pred CCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 462 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 462 ~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.+. ..+..+.+|...|.+++|+|++ .|++++.|+.|++||+
T Consensus 246 ~~~--~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CTT--CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCC--eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 643 5667778899999999999986 5899999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=3.2e-25 Score=227.61 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=214.9
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEE--EE---eccCCccEEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--ST---LEEHTQWITDVR 312 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~--~~---l~~h~~~V~~l~ 312 (545)
.+..+.+||..++.... .+..| ..+..++|||||++|++++.|+.|++||+.+++.. .. ..+|.+.+.+++
T Consensus 40 d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp TTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred CCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence 45678999998887544 45555 36999999999999999999999999999876632 22 245777777888
Q ss_pred EcCCCCEE-EEEeCCCeEEEEECCCCCeeeeEecc-----------CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 313 FSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 313 ~sp~~~~l-~t~s~dg~I~vwd~~~~~~~~~~~~~-----------h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
|+|||++| ++++.+++|++||..+++. +..+.. +......+.++|++..++++...++.|.+||..+
T Consensus 116 ~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 116 EGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 89999986 6788899999999998765 444433 3456778899999998888999999999999988
Q ss_pred Cceee--EEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecC-----CCCCEEEEEEcCCCCEEEEEe-
Q 009059 381 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 381 ~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-----h~~~I~~l~~sp~g~~l~s~s- 451 (545)
.+... .+.....+..+.|+|++.++++++. ++.+.++|..+++.+..+.. |........+...+...++..
T Consensus 195 ~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~l 274 (432)
T d1qksa2 195 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM 274 (432)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBS
T ss_pred CCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceeccccc
Confidence 77554 4455567889999999998888876 56899999999888766542 334445555555556666555
Q ss_pred -CCcEEEEEcCCCCC----cceEEEEeeCCCce-------------------------EEEEEcCCCCEEEEEEcCCeEE
Q 009059 452 -DELVRVWSIGSGSK----GECIHELSCTGNKF-------------------------HSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 452 -dg~I~vwd~~~~~~----~~~i~~~~~~~~~v-------------------------~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
++.|.+|+...... ......+..+.... .++++ ||++.+++++.|+.++
T Consensus 275 g~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k 353 (432)
T d1qksa2 275 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFK 353 (432)
T ss_dssp SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEE
T ss_pred CCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceE
Confidence 66888887654321 11222222211111 11222 5566666666677777
Q ss_pred EEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-----CCCcEEEcC
Q 009059 502 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 545 (545)
Q Consensus 502 iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-----~Dg~I~iWd 545 (545)
+||+.++. .+..|...|.+++|+|||++|+.+. .+|.|+|||
T Consensus 354 ~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 354 TLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 77664432 2235777899999999999886554 468899997
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=8e-22 Score=190.05 Aligned_cols=262 Identities=14% Similarity=0.166 Sum_probs=213.7
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCC
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 316 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~ 316 (545)
.+..+.+||..++.....+ .. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..|.. +..++|+++
T Consensus 10 ~~~~v~v~D~~t~~~~~~i---~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~ 84 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATI---PV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPD 84 (301)
T ss_dssp TTTEEEEEETTTTEEEEEE---EC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTT
T ss_pred CCCEEEEEECCCCeEEEEE---EC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccc
Confidence 3457899999998755444 33 24578999999999875 566789999999999999999887764 688999999
Q ss_pred CCEEEE-EeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeE
Q 009059 317 LSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 317 ~~~l~t-~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
+.++++ +..++.+.+|+..++.. ...+. +...+.++.|+|++..+++++..++.+.+|+..+......+.....+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (301)
T d1l0qa2 85 GKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG 162 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred cccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence 986655 55678999999987654 55555 4456789999999999988999999999999999999999998888999
Q ss_pred EEEeCCCCEEEEEECC-CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEE
Q 009059 396 MRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 470 (545)
Q Consensus 396 l~~sp~~~~l~~~~~d-g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~ 470 (545)
+.+++++..++++..+ +.+.+|+.........+.. ...+..++|++++..++++. ++.|++||+.++ +.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~ 238 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA 238 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred EEeeccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCC---eEEE
Confidence 9999999998888875 6788888888877776664 45678899999999877654 357999999887 5566
Q ss_pred EEeeCCCceEEEEEcCCCCEEE-EEEcCCeEEEEeCCCCeEE
Q 009059 471 ELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL 511 (545)
Q Consensus 471 ~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~I~iwd~~~~~~~ 511 (545)
.+.. ...+..++|+|++++|+ +++.++.|++||+++++++
T Consensus 239 ~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 239 RIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 6553 45689999999999875 4556789999999999887
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=1.9e-24 Score=214.16 Aligned_cols=271 Identities=11% Similarity=0.016 Sum_probs=211.1
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCCeeeeEe
Q 009059 268 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTF 344 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg--~I~vwd~~~~~~~~~~~ 344 (545)
.-.||| ||+++|+++ +|.|+|||++++..+.. .|...|.+++|+|||++|++++.+. .|++||++++. ...+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~~ 81 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEKF 81 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEEC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEEe
Confidence 467999 999999987 57999999998877654 6899999999999999998876553 79999998765 5677
Q ss_pred ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCeeEEEEeCCCCEEEEEEC----------CCe
Q 009059 345 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI----------ENY 413 (545)
Q Consensus 345 ~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~----------dg~ 413 (545)
..|...|.+++|+|++..++ +++.++.+++|++.++++...+..+ ..+.+++|+|++.+|+.+.. ++.
T Consensus 82 ~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 82 EENLGNVFAMGVDRNGKFAV-VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCSEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred eCCCceEEeeeecccccccc-eeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 88999999999999986555 7888999999999999988877644 45789999999999887653 346
Q ss_pred EEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCC
Q 009059 414 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF 488 (545)
Q Consensus 414 I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~ 488 (545)
+++||+.+++.... ..+...+..++|+|+|++|++++ ++.+++|+...... ......+..+...+..+.|++++
T Consensus 161 ~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 161 IHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred eeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 99999999876554 44778889999999999999988 88999999765321 12333444455555666777777
Q ss_pred CEEEEEEcCC-----eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC---EEEEEeCCCcEEEcC
Q 009059 489 PSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 545 (545)
Q Consensus 489 ~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~---~las~s~Dg~I~iWd 545 (545)
..++.+..+. .+..++...+....+..+.+.+..+.+...+. ++++++.++.|++||
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 304 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred CcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence 7665554432 35566667777666667777777777666554 788899999999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1.9e-22 Score=197.48 Aligned_cols=262 Identities=11% Similarity=0.070 Sum_probs=203.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCc----
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS---- 348 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~---- 348 (545)
+||++++.|++|+|||+.+++.+..+.. +...+.+++|+|||++|+ +++.++.|.+||+.+++. +..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence 5899999999999999999999988864 345678999999999874 567899999999998775 55554443
Q ss_pred -ccEEEEEEeCCCCcEEEEEc-----------CCCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEE
Q 009059 349 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 416 (545)
Q Consensus 349 -~~V~~l~~~p~~~~ll~s~s-----------~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i 416 (545)
..+..++|+|++..+++... .+..+.+||..+++....+.....+..++|+|++.++++++ +.+.+
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~ 158 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence 34557899999887775543 46789999999999999999888899999999999998875 45788
Q ss_pred EECCCCEEEEEecCCCCCEEEEEEcCCCC------------------------EEEEEe-CCcEEEEEcCCCCCcceEEE
Q 009059 417 LDVETQVCRLKLQGHKNQVHSVCWNTSGE------------------------YLASVS-DELVRVWSIGSGSKGECIHE 471 (545)
Q Consensus 417 ~d~~~~~~~~~~~~h~~~I~~l~~sp~g~------------------------~l~s~s-dg~I~vwd~~~~~~~~~i~~ 471 (545)
||..+++....+..+... ....+.+++. .+.... ++.+.+|+..++. .....
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence 999999888877543221 1111122111 111111 3468889988763 23344
Q ss_pred EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 472 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 472 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
+..+...+..+.+++++.+++++ ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|+|||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 55677888999999999977665 4789999999999996667788899999999999999999999999997
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=7.8e-23 Score=201.05 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=200.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEecc
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
++|++++++|++++.++.|.|||+.+++.+.++. .|...+.+++|+|||++++ ++..++.|.+||+.+++. +..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence 5789999999999999999999999999999886 4566788999999999875 555789999999998765 443332
Q ss_pred C------cccEEEEEEeCCCCcEEEEE-----------cCCCcEEEEECCCCceeeEE---eccCCeeEEEEeCCCCEEE
Q 009059 347 H------STTVMSLDFHPSKEDLLCSC-----------DNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 347 h------~~~V~~l~~~p~~~~ll~s~-----------s~dg~I~lwd~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~ 406 (545)
. ...+..++|+|+|..++++. ..+..+.+|+..+++....+ .....+..+.+.+++. ++
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 159 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 159 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-EE
Confidence 1 23456789999998776553 24778999999887655433 2334556666666644 44
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEE--------------------------EEEe-CCcEEEEE
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--------------------------ASVS-DELVRVWS 459 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l--------------------------~s~s-dg~I~vwd 459 (545)
+. ++.+.+|++.+++.+..+..+. ....+.++|++..+ +++. +..+.+||
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred Ee--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 43 3668999999998888776432 23333444444322 2222 44677788
Q ss_pred cCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEeCCC
Q 009059 460 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 539 (545)
Q Consensus 460 ~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s~Dg 539 (545)
+.++. ........+...+..+.+++++.+++.... +.|++||..+++.+....+...+.+++|+|||++|++++.||
T Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 87653 233445567788999999999987776654 579999999999886556677899999999999999999999
Q ss_pred cEEEcC
Q 009059 540 CVKIWK 545 (545)
Q Consensus 540 ~I~iWd 545 (545)
.|+|||
T Consensus 314 ~v~v~D 319 (346)
T d1jmxb_ 314 DLAVFN 319 (346)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.4e-21 Score=199.73 Aligned_cols=265 Identities=8% Similarity=-0.009 Sum_probs=194.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~ 352 (545)
++++.+.||.|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++.. +....+|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 55778889999999999999999998775 5899999999999999999999999999887632 223345677788
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc------------CCeeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
+++|+|+|+.+++++..++.+++||..++.+...+... .....+.+++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 88899999988888889999999999999887665422 23455667777666666554 456666666
Q ss_pred CCCEE-EEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeC--CCceEEEEEcCCCC-EEEE
Q 009059 420 ETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFP-SLLV 493 (545)
Q Consensus 420 ~~~~~-~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~--~~~v~~~~~sp~~~-~l~~ 493 (545)
..... .....++...+..+.|+|++++++++. +..+.+|+..++ ..+...... ........+...+. .++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence 55432 223335778899999999999998887 558999999877 444443322 12222233322222 2222
Q ss_pred --EEcCCeEEEEeCCCC-------eEE-EeccCCCCeeEEEEeCCCCEEEE-------EeCCCcEEEcC
Q 009059 494 --IGCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAASTVNGMVAS-------ASHDKCVKIWK 545 (545)
Q Consensus 494 --~~~dg~I~iwd~~~~-------~~~-~~~~h~~~V~~l~~spd~~~las-------~s~Dg~I~iWd 545 (545)
...++.+.+|+.... +.. .+.+|...+..++|+||+++|++ ++.|++|+|||
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd 338 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence 224567777776442 344 78899999999999999999994 55688999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.2e-20 Score=193.21 Aligned_cols=186 Identities=10% Similarity=-0.004 Sum_probs=152.5
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCee----eeEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~ 352 (545)
++++.+.||+|.|||..+++.+..+..|. .+..++|+|||++|++++.|++|++||+.+++.. +....+|.+.+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 45888899999999999999999998774 6999999999999999999999999999876532 223345667777
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec------------cCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~------------~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
+..|+|||+.++++++.++.|++||..+++++..+.. ......+.+++++..++++.. ++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 8888999999988999999999999999998876642 233567889999888766554 789999999
Q ss_pred CCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC
Q 009059 420 ETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 420 ~~~~~~~~~~-~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~ 463 (545)
.+.+...... .+...+..++|+|+|+++++++ ++.+.++|..+.
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 8876443222 3567889999999999988887 558999998775
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.6e-20 Score=183.48 Aligned_cols=263 Identities=13% Similarity=0.088 Sum_probs=197.3
Q ss_pred ccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCeEEEEeccCC-----ccEEEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHT-----QWITDV 311 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~l-atg~~dg~I~lwd~~~~~~~~~l~~h~-----~~V~~l 311 (545)
.|..+.+||..++.....+. +..+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..+. ..+..+
T Consensus 9 ~d~~v~v~D~~s~~~~~~i~-~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v 87 (337)
T d1pbyb_ 9 RPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred CCCEEEEEECCCCeEEEEEE-CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence 46778999999886554432 23445668899999999987 466788999999999999998876553 334578
Q ss_pred EEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 312 RFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 312 ~~sp~~~~l~t~s------------~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
+|+|++++++++. .+..+.+||..+... ...+. +...+..++|+|++..++ +++ +.+.+||..
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~-~~~--~~~~~~d~~ 162 (337)
T d1pbyb_ 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLY-GLG--RDLHVMDPE 162 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEE-EES--SSEEEEETT
T ss_pred EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEE-EEc--CCcceeeee
Confidence 9999999998876 357889999998764 55555 445688999999988776 443 457889999
Q ss_pred CCceeeEEeccCCeeEEEEeCCCC------------------------EEEEEECCCeEEEEECCCCEEEE-EecCCCCC
Q 009059 380 NGSCAGVFKCQSGATQMRFQPRLG------------------------RILAAAIENYISILDVETQVCRL-KLQGHKNQ 434 (545)
Q Consensus 380 ~~~~~~~~~~~~~v~~l~~sp~~~------------------------~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~ 434 (545)
+++....+..........+.+++. .+.....++.+.+||..++.... .+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (337)
T d1pbyb_ 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc
Confidence 998887776543322222222211 11112224469999999886544 45567788
Q ss_pred EEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE
Q 009059 435 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 511 (545)
Q Consensus 435 I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 511 (545)
+.++.+++++.+++++ ++.|++||+.++ ..+..+. +...+.+++|+|+|++|++++.++.|++||..+.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~-~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 243 YFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eEEEEecccceEEEEc-cccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 9999999999988755 688999999887 5666654 5667899999999999999999999999999999887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=4.2e-19 Score=176.91 Aligned_cols=279 Identities=11% Similarity=0.030 Sum_probs=203.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------
Q 009059 260 PASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---------- 324 (545)
Q Consensus 260 ~~H~~~V~~l~~spdg~~latg~-----~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s---------- 324 (545)
..|.+++.+++++|||+.++... .++.|.+||..+++.+..+..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46788899999999999987652 3467999999999999988776554 799999999999875
Q ss_pred CCCeEEEEECCCCCeeeeEeccCcccE-------EEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCeeEE
Q 009059 325 ADRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQM 396 (545)
Q Consensus 325 ~dg~I~vwd~~~~~~~~~~~~~h~~~V-------~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v~~l 396 (545)
.++.|.+||+.+++. +..+..+.... ..+.|+++++.+++.. ..++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCY 170 (373)
T ss_pred cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeE
Confidence 357899999998775 55555444333 4567888877665443 44677888988876655444 346678
Q ss_pred EEeCCCCEEE-EEECCCeEEEEECCCCEEEEEecCC------CCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceE
Q 009059 397 RFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 469 (545)
Q Consensus 397 ~~sp~~~~l~-~~~~dg~I~i~d~~~~~~~~~~~~h------~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i 469 (545)
.+++++..++ +...|+.+.+|+...+........+ ......+.+.+++.+++.+.++.+.+|+...... ..+
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEE
Confidence 8999987664 5667999999999988776654332 2234556677777777766688999999876532 111
Q ss_pred EEEeeC----------CCceEEEEEcCCCCEEE----------EEEcCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCC
Q 009059 470 HELSCT----------GNKFHSCVFHPTFPSLL----------VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 529 (545)
Q Consensus 470 ~~~~~~----------~~~v~~~~~sp~~~~l~----------~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~ 529 (545)
...... ......+++++++..++ ....++.+.+||..+++.+....+...+.+++|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG 329 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG 329 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC
Confidence 111111 12334456666665444 4455668999999999988666788889999999999
Q ss_pred C--EEEEEeCCCcEEEcC
Q 009059 530 G--MVASASHDKCVKIWK 545 (545)
Q Consensus 530 ~--~las~s~Dg~I~iWd 545 (545)
+ ++++++.|+.|+|||
T Consensus 330 ~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 330 GPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CEEEEEEeCCCCeEEEEE
Confidence 8 457889999999997
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=9e-19 Score=171.03 Aligned_cols=269 Identities=10% Similarity=0.185 Sum_probs=191.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeee--EeccCcccE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR--TFTGHSTTV 351 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~--~~~~h~~~V 351 (545)
.+++++.|++|+||++.....+. ....|.+.|..|+|+|||++|++++ .|+.|++|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 45677799999999987543322 2235788899999999999996655 489999999986553222 223344567
Q ss_pred EEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe---ccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEE-
Q 009059 352 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 426 (545)
Q Consensus 352 ~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~- 426 (545)
..++|+|+++.+++++..++.|.+|+........... ....+.++.++|++.+++++.. +..|.+|+........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 8899999998888777778899999987766544433 3456888999999998888876 5679999987642211
Q ss_pred -----EecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCc-ceEEEEe------eCCCceEEEEEcCCCCEEE
Q 009059 427 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS------CTGNKFHSCVFHPTFPSLL 492 (545)
Q Consensus 427 -----~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~-~~i~~~~------~~~~~v~~~~~sp~~~~l~ 492 (545)
...........++|++++.+++... .+...+|++...... ....... ........+++++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 1223456778999999999888776 557888887654321 1222221 1234567789999999877
Q ss_pred EEEc-CCeEEEEeCCCCeEE----EeccCCCCeeEEEEeCCCCEEEEEeC-CCcEEEcC
Q 009059 493 VIGC-YETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASASH-DKCVKIWK 545 (545)
Q Consensus 493 ~~~~-dg~I~iwd~~~~~~~----~~~~h~~~V~~l~~spd~~~las~s~-Dg~I~iWd 545 (545)
+... ++.+.+|++...... ....+...+.+++|+|||++|++++. ++.|+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 7765 458999987654322 23345567889999999998877764 68899984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.5e-18 Score=169.40 Aligned_cols=274 Identities=12% Similarity=0.105 Sum_probs=196.6
Q ss_pred cccceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEe---ccCCccEEEEE
Q 009059 237 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTL---EEHTQWITDVR 312 (545)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~-~dg~I~lwd~~~~~~~~~l---~~h~~~V~~l~ 312 (545)
+.+..+++|++.....+..++.+ .|.+.|.+|+|+|||++|++++ .|+.|++|++........+ ..+...+..++
T Consensus 11 ~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~ 89 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 89 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence 35678899998766555555554 4778899999999999986555 5899999998765433222 23445577899
Q ss_pred EcCCCCEEEEEeC-CCeEEEEECCCCCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEE---
Q 009059 313 FSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--- 387 (545)
Q Consensus 313 ~sp~~~~l~t~s~-dg~I~vwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~--- 387 (545)
|+|||++|++++. ++.|.+|+....... ......+...+.++.++|++..+++....+..|.+|+..........
T Consensus 90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred EcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence 9999999999885 678999988765432 23344566778899999999888877777888999998765433221
Q ss_pred ----eccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCC----EEEEEec------CCCCCEEEEEEcCCCCEEEEEe-
Q 009059 388 ----KCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ----VCRLKLQ------GHKNQVHSVCWNTSGEYLASVS- 451 (545)
Q Consensus 388 ----~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~----~~~~~~~------~h~~~I~~l~~sp~g~~l~s~s- 451 (545)
........++|++++..++.... .+...+++.... .....+. ........+++++++++++...
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence 12234678999999888877664 567788876532 2222221 1234677889999999888776
Q ss_pred -CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC-CeEEEE--eCCCCeEE
Q 009059 452 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 511 (545)
Q Consensus 452 -dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~I~iw--d~~~~~~~ 511 (545)
++.+.+|++........+.........+..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 6799999997765444444455556678899999999998888764 689998 55666554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=1.3e-19 Score=177.53 Aligned_cols=265 Identities=8% Similarity=0.040 Sum_probs=194.9
Q ss_pred ccceeeeeecCCceeeEEEEeec-CCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCeEEEEeccC------CccEE
Q 009059 238 RDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEH------TQWIT 309 (545)
Q Consensus 238 ~d~~~~~~~~~~~~~~~~~~~l~-~H~~~V~~l~~spdg~~la-tg~~dg~I~lwd~~~~~~~~~l~~h------~~~V~ 309 (545)
.+..+.+||..++.. +.+++ .|...+.+++|+|||++|+ ++..++.|++||+.+++.+..+... ...+.
T Consensus 16 ~~~~v~v~D~~t~~~---~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~ 92 (346)
T d1jmxb_ 16 YPNNLHVVDVASDTV---YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92 (346)
T ss_dssp TTTEEEEEETTTTEE---EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred CCCEEEEEECCCCCE---EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence 456789999998864 44444 4566788999999999874 5557899999999999988776432 23456
Q ss_pred EEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeeEecc--CcccEEEEEEeCCCCcEEEEEcCCCcEEE
Q 009059 310 DVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 375 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s------------~dg~I~vwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~ll~s~s~dg~I~l 375 (545)
.++|+|||+++++++ .++.+.+|+..++.. ...+.. ....+..+.+.+++ .++++ ++.+.+
T Consensus 93 ~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~ 167 (346)
T d1jmxb_ 93 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYK 167 (346)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEE
T ss_pred EEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeeeccCceEEEEecCCC-EEEEe---CCcceE
Confidence 799999999998775 467889999877553 222211 22345556666665 44433 356899
Q ss_pred EECCCCceeeEEeccCCeeEEEEeCCCCEE--------------------------EEEECCCeEEEEECCCCEEEE-Ee
Q 009059 376 WSINNGSCAGVFKCQSGATQMRFQPRLGRI--------------------------LAAAIENYISILDVETQVCRL-KL 428 (545)
Q Consensus 376 wd~~~~~~~~~~~~~~~v~~l~~sp~~~~l--------------------------~~~~~dg~I~i~d~~~~~~~~-~~ 428 (545)
|++.+++.+..+........+.++|++..+ ..+..+..+.+||+.++.... .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (346)
T d1jmxb_ 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 247 (346)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe
Confidence 999999888877655544444444443322 222334568889998876543 45
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCC
Q 009059 429 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 429 ~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
..|...+..+.+++++.+++...++.|++||+.++ +.+..+. +...+.+++|+||+++|++++.++.|++||+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323 (346)
T ss_dssp EECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence 56888999999999999998888889999999887 5565554 4567999999999999999999999999999999
Q ss_pred eEE-Eec
Q 009059 509 KTL-TLS 514 (545)
Q Consensus 509 ~~~-~~~ 514 (545)
+.+ .+.
T Consensus 324 ~~i~~i~ 330 (346)
T d1jmxb_ 324 EKVKNIK 330 (346)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 988 444
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.80 E-value=1.6e-16 Score=157.94 Aligned_cols=275 Identities=10% Similarity=0.006 Sum_probs=195.1
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEeccCCccE
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWI 308 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~----------dg~I~lwd~~~~~~~~~l~~h~~~V 308 (545)
...+.+||..++.... .+..+..+ .++|+|||++|++++. ++.|.+||..+++.+..+..+....
T Consensus 46 ~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 120 (373)
T d2madh_ 46 IIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred CceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence 3456677777776444 45555543 7999999999998753 5789999999999998887665544
Q ss_pred -------EEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECC
Q 009059 309 -------TDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 379 (545)
Q Consensus 309 -------~~l~~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~ 379 (545)
..+.|+++++.++... .++.+.+|+....+. . .+.....++.++|+++.++++.+.|+.+.+|+..
T Consensus 121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~ 195 (373)
T d2madh_ 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA 195 (373)
T ss_pred eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence 4468888888766654 356788898876543 2 2334567889999999898899999999999999
Q ss_pred CCceeeEEeccC-----C--eeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecCCC----------CCEEEEEE
Q 009059 380 NGSCAGVFKCQS-----G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCW 440 (545)
Q Consensus 380 ~~~~~~~~~~~~-----~--v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~----------~~I~~l~~ 440 (545)
.++......... . ...+.+.++ ..++..+.++.+.+|+........ .+..+. .....+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (373)
T d2madh_ 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred CceeeEEEeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence 888776554211 1 233444544 556677788999999988765332 222221 22344556
Q ss_pred cCCCCEEE----------EEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE--EEEEEcCCeEEEEeCCC
Q 009059 441 NTSGEYLA----------SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTE 507 (545)
Q Consensus 441 sp~g~~l~----------s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~--l~~~~~dg~I~iwd~~~ 507 (545)
++++..++ ... ++.+.+||..++ ..+..+. +...+..++|+|||+. +++++.++.|++||+.+
T Consensus 275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred ecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence 66665443 233 568999999887 5555554 5677899999999985 35677888999999999
Q ss_pred CeEE-EeccCCCCeeEEEEeCC
Q 009059 508 NKTL-TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 508 ~~~~-~~~~h~~~V~~l~~spd 528 (545)
++.+ .+..+......|++.++
T Consensus 351 g~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 351 GDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEECCCCCCCcEEEEecC
Confidence 9998 66678888888887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=5.3e-18 Score=167.35 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=185.1
Q ss_pred EEEEEcCCCCEEEEEe-----CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CCCeEEE
Q 009059 267 ESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRV 331 (545)
Q Consensus 267 ~~l~~spdg~~latg~-----~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~dg~I~v 331 (545)
.-.+.+|||+.+++.. .++.|.+||..+++.+.++..+..+ .++|+|||++|++++ .|+.|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3346689999987753 3567999999999999988766554 699999999888653 4789999
Q ss_pred EECCCCCeeeeEeccCc-------ccEEEEEEeCCCCcEEEEE-cCCCcEEEEECCCCceeeEEeccCCe--------eE
Q 009059 332 WDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA--------TQ 395 (545)
Q Consensus 332 wd~~~~~~~~~~~~~h~-------~~V~~l~~~p~~~~ll~s~-s~dg~I~lwd~~~~~~~~~~~~~~~v--------~~ 395 (545)
||+.+++. +..+..+. .....++|++++..+++.. +.+..+.+|+..+++.+..+...... ..
T Consensus 83 ~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d2bbkh_ 83 FDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 161 (355)
T ss_dssp ECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence 99998775 44433222 2335678999988776443 45678999999999988877654322 23
Q ss_pred EEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEe
Q 009059 396 MRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 396 l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~ 473 (545)
+.+++++..+++... ++.+.+++..... ..+...+....+.+++..++.++ ++.+++|++..+.. ..+....
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~ 235 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVE 235 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccC
Confidence 344444444433322 2333333333221 12334455667778888888777 88999999987632 1222111
Q ss_pred eC----------CCceEEEEEcCCCCEEEEEEcCC----------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC--E
Q 009059 474 CT----------GNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--M 531 (545)
Q Consensus 474 ~~----------~~~v~~~~~sp~~~~l~~~~~dg----------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~--~ 531 (545)
.+ ......+++++++..+++...++ .|.+||..+++.+....+...+.+++|+|||+ +
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l 315 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEE
T ss_pred CcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEE
Confidence 11 12234578999999888776543 69999999999884444566789999999997 4
Q ss_pred EEEEeCCCcEEEcC
Q 009059 532 VASASHDKCVKIWK 545 (545)
Q Consensus 532 las~s~Dg~I~iWd 545 (545)
+++++.|+.|+|||
T Consensus 316 ~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 316 YALSTGDKTLYIHD 329 (355)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEE
Confidence 56777899999997
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.1e-16 Score=157.75 Aligned_cols=276 Identities=10% Similarity=0.071 Sum_probs=186.9
Q ss_pred cceeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccCCc--
Q 009059 239 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-- 306 (545)
Q Consensus 239 d~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h~~-- 306 (545)
...+.+||..++..+. ++..+..+ .++|||||++|++.+ .|+.|++||+.+++.+..+..+..
T Consensus 27 ~~~v~v~D~~tg~~~~---~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~ 101 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIG---MIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 101 (355)
T ss_dssp SEEEEEEETTTTEEEE---EEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred cCeEEEEECCCCcEEE---EEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce
Confidence 4567788988886544 34444433 799999999887653 478999999999998877654322
Q ss_pred -----cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCeeeeEeccCcc-------cEEEEEEeCCCCcEEEEEcCCCc
Q 009059 307 -----WITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 307 -----~V~~l~~sp~~~~l~t~s--~dg~I~vwd~~~~~~~~~~~~~h~~-------~V~~l~~~p~~~~ll~s~s~dg~ 372 (545)
....++|++++++++++. .+..+.+|+..+++. +..+..+.. ....+.+++++..+++....++.
T Consensus 102 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~ 180 (355)
T d2bbkh_ 102 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 180 (355)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCe
Confidence 234579999999888775 457899999988764 444443321 22334555665555544445555
Q ss_pred EEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEE--EecCCC----------CCEEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCW 440 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~--~~~~h~----------~~I~~l~~ 440 (545)
+.+++........ ...+....+.+++..++.++.++.+++|++..+.... ....+. .....+++
T Consensus 181 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 256 (355)
T d2bbkh_ 181 PEITHTEVFHPED----EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256 (355)
T ss_dssp CEEEECCCCSCTT----SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred EEEEeccccccee----cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEE
Confidence 5555544333211 1224456778888899999999999999998775322 122111 12345888
Q ss_pred cCCCCEEEEEe-C----------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE--EEEEEcCCeEEEEeCCC
Q 009059 441 NTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTE 507 (545)
Q Consensus 441 sp~g~~l~s~s-d----------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~--l~~~~~dg~I~iwd~~~ 507 (545)
++++..++... + +.|.+||..++ +.+..+.. ...+.+++|+|+++. +++++.++.|++||+.+
T Consensus 257 ~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~t 332 (355)
T d2bbkh_ 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332 (355)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred eCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCC
Confidence 99998887664 2 36999999887 44555543 456889999999974 34455678999999999
Q ss_pred CeEE-EeccCCCCeeEEEEeCC
Q 009059 508 NKTL-TLSAHDKLVSSLAASTV 528 (545)
Q Consensus 508 ~~~~-~~~~h~~~V~~l~~spd 528 (545)
++.+ .+..+......+.+.++
T Consensus 333 g~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 333 GEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp CCEEEEECCCCSSCCEEECCCC
T ss_pred CCEEEEEeCcCCCccEEEeCCC
Confidence 9988 66667666666666544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=4.6e-15 Score=148.32 Aligned_cols=258 Identities=11% Similarity=0.024 Sum_probs=184.5
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecc------------------------------CCccEEEEEEcCCCCEEEEEe-CC
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD 326 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~------------------------------h~~~V~~l~~sp~~~~l~t~s-~d 326 (545)
+++++.+|.|+||++.+++.+.++.. |.-.+....+.|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56778899999999999998877531 223355555678999987665 67
Q ss_pred CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCc------------------EEEEECCCCceeeEEe
Q 009059 327 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE------------------IRYWSINNGSCAGVFK 388 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~------------------I~lwd~~~~~~~~~~~ 388 (545)
..|.++|+.+.+.....-..+...+..++|+|+++..++.+..+.. +..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 8999999998765222233466789999999998865544433333 3558888888888888
Q ss_pred ccCCeeEEEEeCCCCEEEEEECC-----------------------------------------CeEEEEECCCCEEEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAIE-----------------------------------------NYISILDVETQVCRLK 427 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~d-----------------------------------------g~I~i~d~~~~~~~~~ 427 (545)
.......+.|+|+|+++++.+.+ +.+.+++......+..
T Consensus 174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~ 253 (441)
T d1qnia2 174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY 253 (441)
T ss_dssp ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence 88889999999999999888753 2334444444444555
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC--------CcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~--------~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+.... ....+.++|||+++++++ +++|.|||+.+.. ...++.......-......|++++..+.+...|
T Consensus 254 IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d 332 (441)
T d1qnia2 254 IPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID 332 (441)
T ss_dssp ECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred EeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence 55433 357899999999988776 8899999986521 112232222233345667899999877777889
Q ss_pred CeEEEEeCCC----------CeEE-Ee-----ccCCCCeeEEEEeCCCCEEEEEe
Q 009059 498 ETLELWNMTE----------NKTL-TL-----SAHDKLVSSLAASTVNGMVASAS 536 (545)
Q Consensus 498 g~I~iwd~~~----------~~~~-~~-----~~h~~~V~~l~~spd~~~las~s 536 (545)
..|..|++.. ...+ .+ .+|...+.+.+++|||+||++++
T Consensus 333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 9999999741 1222 23 47777788888999999999994
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=5.3e-15 Score=147.01 Aligned_cols=277 Identities=10% Similarity=-0.043 Sum_probs=185.8
Q ss_pred CCCCeEEEEEcCCCCEEEE---EeCCC--cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe----------CC
Q 009059 262 STSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------AD 326 (545)
Q Consensus 262 H~~~V~~l~~spdg~~lat---g~~dg--~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s----------~d 326 (545)
+.++...++..++++.... ...++ .|.+||..+++.+..+..+... .++|+|||++|++++ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 4445555667778875322 23334 5777799999999888777655 589999999998865 37
Q ss_pred CeEEEEECCCCCeeeeEeccCc-------ccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEe
Q 009059 327 RTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 399 (545)
Q Consensus 327 g~I~vwd~~~~~~~~~~~~~h~-------~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s 399 (545)
+.|.+||..+.+. +..+..+. .....++|+|||+.++++...++.+.+||+.+++.+..+..+...... .
T Consensus 96 ~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH--P 172 (368)
T ss_dssp EEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE--E
T ss_pred CeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc--c
Confidence 7899999998765 44443222 223468999999998877677899999999999998888755433211 1
Q ss_pred CCCCEEEEEECCCeEEEEECCCCEEEEE------ecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceEEEEe
Q 009059 400 PRLGRILAAAIENYISILDVETQVCRLK------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS 473 (545)
Q Consensus 400 p~~~~l~~~~~dg~I~i~d~~~~~~~~~------~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i~~~~ 473 (545)
.....+++.+.||.+.++++........ +..+...+..+.+.+++..+.. ..+.++++++..... ..+....
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~~ 250 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAID 250 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCCC
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeecc
Confidence 1224566667788888888765433221 1223445566777777765543 345566777655421 1111111
Q ss_pred eC----------CCceEEEEEcCCCCEEEEEEcCC---------eEEEEeCCCCeEEEeccCCCCeeEEEEeCCCC--EE
Q 009059 474 CT----------GNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MV 532 (545)
Q Consensus 474 ~~----------~~~v~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~--~l 532 (545)
.. ......+++++++..+++...++ .|.+||..+++.+....+...+.+++|+|||+ ++
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly 330 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNY 330 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEE
T ss_pred cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEE
Confidence 10 11224578899988877664332 59999999999885555667899999999997 34
Q ss_pred EEEeCCCcEEEcC
Q 009059 533 ASASHDKCVKIWK 545 (545)
Q Consensus 533 as~s~Dg~I~iWd 545 (545)
+++..|+.|+|||
T Consensus 331 ~s~~~~~~v~v~D 343 (368)
T d1mdah_ 331 ANSAGTEVLDIYD 343 (368)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEE
Confidence 6777899999997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.58 E-value=1.6e-13 Score=140.73 Aligned_cols=283 Identities=12% Similarity=0.005 Sum_probs=169.1
Q ss_pred eeeeeecCCceeeEEE--EeecCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCeEEEEeccCCccEE
Q 009059 241 VGRSAEVGKGFTFTEF--QLIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWIT 309 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~--~~l~~H~~~V~~l~~spdg~~latg~~---------dg~I~lwd~~~~~~~~~l~~h~~~V~ 309 (545)
.+.+|+..++.....+ ..+..|...|.++.|||||++||.++. ++.+.|||+.+++. ..+..|...+.
T Consensus 37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~ 115 (470)
T d2bgra1 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQ 115 (470)
T ss_dssp CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEE
T ss_pred cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcccc
Confidence 4678888888654332 245667788999999999999998753 46789999998775 46788899999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec-c-----------------CcccEEEEEEeCCCCcEEEEEcCCC
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-G-----------------HSTTVMSLDFHPSKEDLLCSCDNNS 371 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~-~-----------------h~~~V~~l~~~p~~~~ll~s~s~dg 371 (545)
.+.|+|||++||.. .++.+.+|+..++.. .+... + ..+....+.|+|+|+.+++....+.
T Consensus 116 ~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~ 193 (470)
T d2bgra1 116 WVTWSPVGHKLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT 193 (470)
T ss_dssp EEEECSSTTCEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred ccccccCcceeeEe-ecccceEEECCCCce-eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence 99999999999996 567899999987764 32221 1 1223456789999988776554444
Q ss_pred cEEEEEC-----------------------------------CCCceeeEEe------------ccCCeeEEEEeCCCCE
Q 009059 372 EIRYWSI-----------------------------------NNGSCAGVFK------------CQSGATQMRFQPRLGR 404 (545)
Q Consensus 372 ~I~lwd~-----------------------------------~~~~~~~~~~------------~~~~v~~l~~sp~~~~ 404 (545)
.+..|.+ ..+....... ....+..+.|.+++..
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 273 (470)
T d2bgra1 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI 273 (470)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred cCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce
Confidence 3443332 1111110000 0011346777777655
Q ss_pred EEEEEC-CC-----eEEEEECCCCEEEEEec-------------CCCCCEEEEEEcCCC--CEEEEEe-CCc--EEEEEc
Q 009059 405 ILAAAI-EN-----YISILDVETQVCRLKLQ-------------GHKNQVHSVCWNTSG--EYLASVS-DEL--VRVWSI 460 (545)
Q Consensus 405 l~~~~~-dg-----~I~i~d~~~~~~~~~~~-------------~h~~~I~~l~~sp~g--~~l~s~s-dg~--I~vwd~ 460 (545)
++.... .+ .+..+|..++....... .+... ...|.+++ .+++... ||. |++|+.
T Consensus 274 ~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~ 351 (470)
T d2bgra1 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (470)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred eEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEec
Confidence 444332 21 34455666665443211 11112 22344443 3444454 774 555555
Q ss_pred CCCCCcceEEEEeeCCCceEEEEEcCCCCEEEE-EEcCC------eEEEEeCCCCeEE-E----eccCCCCeeEEEEeCC
Q 009059 461 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYE------TLELWNMTENKTL-T----LSAHDKLVSSLAASTV 528 (545)
Q Consensus 461 ~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg------~I~iwd~~~~~~~-~----~~~h~~~V~~l~~spd 528 (545)
... ....+......|..+ ++++++.++. +..++ .|+-.++..+... . +..|...+..++||||
T Consensus 352 ~g~----~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpd 426 (470)
T d2bgra1 352 DKK----DCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKE 426 (470)
T ss_dssp TCS----CCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTT
T ss_pred cCC----ceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCC
Confidence 443 223333345556665 4444555543 33222 2555566654433 2 2367888999999999
Q ss_pred CCEEE
Q 009059 529 NGMVA 533 (545)
Q Consensus 529 ~~~la 533 (545)
|++++
T Consensus 427 gky~~ 431 (470)
T d2bgra1 427 AKYYQ 431 (470)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 99877
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=9.7e-14 Score=137.68 Aligned_cols=269 Identities=11% Similarity=0.023 Sum_probs=172.9
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeccCCc----
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ---- 306 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~----------~dg~I~lwd~~~~~~~~~l~~h~~---- 306 (545)
.+.++|..++..+. ++.++... .++|+|||++|++.+ .|+.|.+||..+++.+..+..+..
T Consensus 47 ~~~~~d~~~~~~~~---~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~ 121 (368)
T d1mdah_ 47 ENWVSCAGCGVTLG---HSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEE---EEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEeCCCCcEEE---EEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence 45556777766443 44555544 589999999998864 367899999999999887754332
Q ss_pred ---cEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc
Q 009059 307 ---WITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 382 (545)
Q Consensus 307 ---~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~ 382 (545)
....++|+|||++|+++. .++.+.+||+.+.+. ...+..+.... +.+.+...++..+.||.+.+|++....
T Consensus 122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCc
Confidence 234689999999998886 479999999998765 55554443321 233445566677788888888887554
Q ss_pred eeeEEec-------cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe--cCCC----------CCEEEEEEcCC
Q 009059 383 CAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHK----------NQVHSVCWNTS 443 (545)
Q Consensus 383 ~~~~~~~-------~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~----------~~I~~l~~sp~ 443 (545)
....... ...+....+.+++..+ ....+.+++++.......... ..+. .....++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~ 274 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred eeeeeeecccccccccceeecccccCcEEE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC
Confidence 3332211 1123445566654322 334566777776655433221 1111 12235788899
Q ss_pred CCEEEEEe--C--------CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCE-EE-EEEcCCeEEEEeCCCCeEE
Q 009059 444 GEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL-VIGCYETLELWNMTENKTL 511 (545)
Q Consensus 444 g~~l~s~s--d--------g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~-l~-~~~~dg~I~iwd~~~~~~~ 511 (545)
+..++... + ..|.+||..++ +.+..+. ....+..++|+||++. ++ ++..++.|++||..+++.+
T Consensus 275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 275 TDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEecCCCceeecCCceEEEEECCCC---cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 88776654 2 25899999887 4455444 3456888999999974 43 4455789999999999988
Q ss_pred EeccCCCCeeEEEE
Q 009059 512 TLSAHDKLVSSLAA 525 (545)
Q Consensus 512 ~~~~h~~~V~~l~~ 525 (545)
....-......|++
T Consensus 351 ~~i~~g~~P~~l~~ 364 (368)
T d1mdah_ 351 SSVELDKGPESLSV 364 (368)
T ss_dssp EECCCCSCCCEEEC
T ss_pred EEEECCCCCCEEEE
Confidence 43333333555554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.46 E-value=3.4e-12 Score=127.32 Aligned_cols=248 Identities=10% Similarity=0.057 Sum_probs=169.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEec-cCCccEEEEEEcCCCC--EEEEEeCCC---------
Q 009059 261 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR--------- 327 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~-~dg~I~lwd~~~~~~~~~l~-~h~~~V~~l~~sp~~~--~l~t~s~dg--------- 327 (545)
.|...+.+..++|||++|++.. .++.|.++|+++++....+. .+...+..++|+|+++ |++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 3555667777789999986664 67899999999999888765 3567899999999988 444444332
Q ss_pred --------eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC------------------------------
Q 009059 328 --------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------ 369 (545)
Q Consensus 328 --------~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~------------------------------ 369 (545)
.+..+|..+... ...+.. ...+..+.|+|+|+.+++++..
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v-~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDV-AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSE-EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred cccccccceEEeecCcccee-eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 235578777665 333332 2457889999999888876643
Q ss_pred ----------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE-CCCeEEEEECCCCEE-----------EEE
Q 009059 370 ----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC-----------RLK 427 (545)
Q Consensus 370 ----------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~I~i~d~~~~~~-----------~~~ 427 (545)
++.+.+++......+..+........+.++|+|+++++++ .+++|.+||+++... +.-
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~ 306 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA 306 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence 2344555555556666777667788899999999887765 489999999865211 111
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC------C-CCcceEEEE-----eeCCCceEEEEEcCCCCEEEEE
Q 009059 428 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------G-SKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVI 494 (545)
Q Consensus 428 ~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~------~-~~~~~i~~~-----~~~~~~v~~~~~sp~~~~l~~~ 494 (545)
.....-......|+++|..+.+.. |..|..|++.. + .....+..+ .+|...+.+..++|+|++|+++
T Consensus 307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred ecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEec
Confidence 111122345568999998888877 99999999842 1 112344444 3455555666789999999999
Q ss_pred Ec---CC----------eEEEEeCCCCeE
Q 009059 495 GC---YE----------TLELWNMTENKT 510 (545)
Q Consensus 495 ~~---dg----------~I~iwd~~~~~~ 510 (545)
+. |. +-.++|+...+.
T Consensus 387 ~k~s~dr~~~~g~~~~~~~q~~~i~~~~~ 415 (441)
T d1qnia2 387 SKFSKDRFLPVGPLHPENDQLIDISGEEM 415 (441)
T ss_dssp ESCCGGGSCCCSSSCCEEEEEEECSSSSC
T ss_pred CccccccCcCCCCCCCccceeEEecCCeE
Confidence 53 32 456788875543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.40 E-value=5.9e-12 Score=128.89 Aligned_cols=138 Identities=16% Similarity=0.121 Sum_probs=108.9
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEec-----cCCccEEEEEEcCCCCEEEEEeC---------CCeEEEEE
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 333 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~-----~h~~~V~~l~~sp~~~~l~t~s~---------dg~I~vwd 333 (545)
.+.|.+|++++.. .|+.|.+||+.+++....+. .|...|.++.|+||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4789999987764 47889999999998776554 45678999999999999998853 56789999
Q ss_pred CCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-------------------cCCee
Q 009059 334 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGAT 394 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-------------------~~~v~ 394 (545)
+.++. +..+..|...+..+.|+|+|..++++. ++.+++|+..+++....... .....
T Consensus 99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCc--ccccccCCccccccccccCcceeeEee--cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99765 566788899999999999998887643 77899999998876543321 12245
Q ss_pred EEEEeCCCCEEEEEECC
Q 009059 395 QMRFQPRLGRILAAAIE 411 (545)
Q Consensus 395 ~l~~sp~~~~l~~~~~d 411 (545)
.+.|+|+|.+|+....|
T Consensus 175 ~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp CEEECTTSSEEEEEEEE
T ss_pred ccEECCCCCccceeEec
Confidence 67899999999887654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7.2e-10 Score=103.70 Aligned_cols=233 Identities=13% Similarity=0.129 Sum_probs=159.9
Q ss_pred cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 286 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 286 ~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg---~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
.|.|.|.+..... .+..+...+...+|||||++||...... .+.+.+..... ...+..+........|+|++..
T Consensus 20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 5777776644444 4444567788999999999999775543 46666666544 4555667788899999999998
Q ss_pred EEEEEcCCCcEEEE--ECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CC--eEEEEECCCCEEEEEecCCCCCEEE
Q 009059 363 LLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS 437 (545)
Q Consensus 363 ll~s~s~dg~I~lw--d~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~I~~ 437 (545)
+++....++...++ .....................+++++..++.... ++ .|.++++..+.... +..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eecccccccc
Confidence 88777655544333 3333443443444444556677787777666654 44 57777777664433 3345667788
Q ss_pred EEEcCCCCEEEEEe--CCc--EEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCC---eEEEEeCCCCeE
Q 009059 438 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 510 (545)
Q Consensus 438 l~~sp~g~~l~s~s--dg~--I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 510 (545)
..|+|+++.++..+ .+. +.+.+...+ . . .............|+|||+.|+..+..+ .|+++++.++..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccceeEEEeecCCceeeeEeecccc---c-c-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 89999999988877 444 444454433 1 1 2333455667889999999988766543 799999999988
Q ss_pred EEeccCCCCeeEEEEeC
Q 009059 511 LTLSAHDKLVSSLAAST 527 (545)
Q Consensus 511 ~~~~~h~~~V~~l~~sp 527 (545)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 88888888888999998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.29 E-value=1.7e-09 Score=106.43 Aligned_cols=248 Identities=9% Similarity=0.012 Sum_probs=152.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CeEEEEe-ccCCccEEEEEEcCCCCEEE--EEe-CCCeEEEEECC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLA--TSS-ADRTVRVWDTE 335 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg~I~lwd~~~-~~~~~~l-~~h~~~V~~l~~sp~~~~l~--t~s-~dg~I~vwd~~ 335 (545)
.+...+.-|+|++++++|.++.. +.+..|.+.. +...... .........++++++++.++ ++. ..+.|..+.+.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34555677999999999988764 5677776653 2332221 11223345677888887443 322 23455554432
Q ss_pred CCCeee----------------eEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCc-eee--EE---eccCCe
Q 009059 336 NPDYSL----------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VF---KCQSGA 393 (545)
Q Consensus 336 ~~~~~~----------------~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~-~~~--~~---~~~~~v 393 (545)
...... .........+.++.|+|++++++++......|.+|++.... ... .. ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 211000 01111223578999999998888776666789888865432 221 11 124568
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCE--EEEE---ec--------------CCCCCEEEEEEcCCCCEEEEEe--
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQV--CRLK---LQ--------------GHKNQVHSVCWNTSGEYLASVS-- 451 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~--~~~~---~~--------------~h~~~I~~l~~sp~g~~l~s~s-- 451 (545)
..+.|+|+++++++... ++.|.+|++.... .+.. +. .+......+.++|+|++|+++.
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 99999999998877775 7899999986542 2211 11 0112356789999999998875
Q ss_pred CC-----cEEEEEcCCCCCcce---EEEEeeCCCceEEEEEcC-CCCEEEEEEc-CCeEEEEeCCCCe
Q 009059 452 DE-----LVRVWSIGSGSKGEC---IHELSCTGNKFHSCVFHP-TFPSLLVIGC-YETLELWNMTENK 509 (545)
Q Consensus 452 dg-----~I~vwd~~~~~~~~~---i~~~~~~~~~v~~~~~sp-~~~~l~~~~~-dg~I~iwd~~~~~ 509 (545)
++ .|..|++........ +............++++| +|++|+++.. ++.|.+|+++...
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 33 377777765422111 112222345667899998 7898888864 5699999876554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.6e-09 Score=98.75 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=147.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 009059 261 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 336 (545)
Q Consensus 261 ~H~~~V~~l~~spdg~~latg~~dg---~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-dg~I~vwd~~~ 336 (545)
.+...+...+|||||+.||....+. .+.+.+...+... .+..+...+....|+|+++.++.... ++...++....
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~ 114 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 114 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence 4456788999999999999875433 4666676665544 44456778889999999998887654 33333332222
Q ss_pred CCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC--cEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC--
Q 009059 337 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-- 412 (545)
Q Consensus 337 ~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg--~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg-- 412 (545)
...................+++++..++++...++ .|.+.++..+................|+|++..++....++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~ 194 (269)
T d2hqsa1 115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ 194 (269)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence 22223333444555666778888777777776666 45666766665544444445567789999999988877654
Q ss_pred -eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCC
Q 009059 413 -YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 487 (545)
Q Consensus 413 -~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~ 487 (545)
.+.++|...+... +..+........|+|||+.|+..+ .+ .|+++++..+. ...+......+...+|+|-
T Consensus 195 ~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 195 QHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCC
T ss_pred eeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeCCC
Confidence 5666676666542 333556677889999999987665 22 78899987652 2345555667788899983
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.25 E-value=1.2e-09 Score=107.56 Aligned_cols=267 Identities=9% Similarity=0.097 Sum_probs=161.6
Q ss_pred EEEEeC--CCcEEEE--EcCCCeEE--EEe-ccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE-eccCcc
Q 009059 278 LATGGH--DKKAVLW--CTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHST 349 (545)
Q Consensus 278 latg~~--dg~I~lw--d~~~~~~~--~~l-~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~-~~~h~~ 349 (545)
|++|++ .+.|.++ |.+++++. ... ......+..|+|++++++|+++.. +.+..|.+......... ......
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 556654 4566554 44555442 221 223445667999999999988865 56778877644322211 111223
Q ss_pred cEEEEEEeCCCCcEEEEEc--CCCcEEEEECCC-CceeeE---------------E--eccCCeeEEEEeCCCCEEEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGV---------------F--KCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s--~dg~I~lwd~~~-~~~~~~---------------~--~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
....+.++++++.++++.. ..+.|..+.+.. +..... . .....+.++.|+|++++++++.
T Consensus 84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d 163 (365)
T d1jofa_ 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence 4556778888765543332 245555544321 111100 0 1123478999999999998887
Q ss_pred C-CCeEEEEECCC-CEE--EEEe--cCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcce--EEEEee-----
Q 009059 410 I-ENYISILDVET-QVC--RLKL--QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSC----- 474 (545)
Q Consensus 410 ~-dg~I~i~d~~~-~~~--~~~~--~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~--i~~~~~----- 474 (545)
. ...|.+|+... +.. .... .........++|+|+++++++.. ++.|.+|++........ +.....
T Consensus 164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T d1jofa_ 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence 6 46888887653 222 1222 22456789999999999987777 77999999976543221 111110
Q ss_pred ---------CCCceEEEEEcCCCCEEEEEEcC------CeEEEEeCCCCeEE----E---eccCCCCeeEEEEeC-CCCE
Q 009059 475 ---------TGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTENKTL----T---LSAHDKLVSSLAAST-VNGM 531 (545)
Q Consensus 475 ---------~~~~v~~~~~sp~~~~l~~~~~d------g~I~iwd~~~~~~~----~---~~~h~~~V~~l~~sp-d~~~ 531 (545)
.......+.++|+|++|+++... ..|..|++.....+ . .........+++++| +|++
T Consensus 244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~ 323 (365)
T d1jofa_ 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence 11235678999999999887542 24777877553222 1 112345678899998 7898
Q ss_pred EEEEe-CCCcEEEcC
Q 009059 532 VASAS-HDKCVKIWK 545 (545)
Q Consensus 532 las~s-~Dg~I~iWd 545 (545)
|+++. .++.|.||+
T Consensus 324 l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 324 MAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEECSSSCEEEEEE
T ss_pred EEEEeCCCCeEEEEE
Confidence 77765 678899984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.19 E-value=2.7e-09 Score=99.68 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=153.9
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCcee
Q 009059 306 QWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 384 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~ 384 (545)
.....|++.++|.++++. +..+.|..++............+ ......+++.+++. ++++....+.+++++-.+...+
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee
Confidence 346899999999976665 44577777777654432222222 23467889999864 6656666667777766555555
Q ss_pred eEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q 009059 385 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 463 (545)
Q Consensus 385 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~ 463 (545)
........+..+++.++++.+++-.....+..++...................++++++++++++.. ++.|..++....
T Consensus 92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 4444445688999999877666655567788888766543332222234567899999999877766 778999987654
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec-cCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
...............+++.+++..+++....+.|..++........+. ..-.....|+++++|.++++-..+++|+
T Consensus 172 ---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 172 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ---eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 222222233456788999999986666556678888887665544332 2335678999999999887766677776
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
..
T Consensus 249 ~i 250 (260)
T d1rwia_ 249 KL 250 (260)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=4.5e-09 Score=100.47 Aligned_cols=227 Identities=10% Similarity=0.051 Sum_probs=154.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEe
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 344 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~ 344 (545)
.+..++++|||+++++...+++|..|+... + ...+......+.+++|.++|+++++...++.+.+|+..........+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 478899999999999998899998888554 3 33344566789999999999999998888888888876443323322
Q ss_pred --ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-----------cCCeeEEEEeCCCCEEEEEECC
Q 009059 345 --TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----------QSGATQMRFQPRLGRILAAAIE 411 (545)
Q Consensus 345 --~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-----------~~~v~~l~~sp~~~~l~~~~~d 411 (545)
.........+++.+++ .++++.+.++.+..+|...+........ ......+.+..+ ..+++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEEEEETTT
T ss_pred cccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-ceeeecCCC
Confidence 2344568899999986 5666777788899999887654332221 112455666542 334444557
Q ss_pred CeEEEEECCCCEEE---EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEE---
Q 009059 412 NYISILDVETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--- 484 (545)
Q Consensus 412 g~I~i~d~~~~~~~---~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~--- 484 (545)
+.|+.++....... ..+. .......++++++|.++++.. ++.|..++.... ...+......-...++++|
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~~~pt~vafg~~ 261 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGVIGSTAVAFGQT 261 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTCTTEEEEEECCS
T ss_pred CeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecCCCCCCceEEEEcCC
Confidence 89999987653211 1111 233456799999999877766 788888876532 1223333334456889999
Q ss_pred cCCCCEEEEEEcCC
Q 009059 485 HPTFPSLLVIGCYE 498 (545)
Q Consensus 485 sp~~~~l~~~~~dg 498 (545)
.+|++.|++++..+
T Consensus 262 ~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 262 EGDCTAIYVVTNGG 275 (302)
T ss_dssp TTTTTEEEEEECTT
T ss_pred CCCCCEEEEECCCC
Confidence 67888888776653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.16 E-value=1e-08 Score=97.85 Aligned_cols=236 Identities=9% Similarity=0.029 Sum_probs=157.6
Q ss_pred CeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEE
Q 009059 295 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 374 (545)
Q Consensus 295 ~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~ 374 (545)
.+.+..+... ..+..+++.|||+++++...+++|..|+... . ...+......+.+++|.+++. ++++...++.+.
T Consensus 18 ~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~ 92 (302)
T d2p4oa1 18 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N--QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIP 92 (302)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C--EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C--EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEE
Confidence 3444555432 2588899999999999999999998888663 2 344555667899999999986 555666677788
Q ss_pred EEECCCCc--eeeEEe--ccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecC----------CCCCEEEEEE
Q 009059 375 YWSINNGS--CAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------HKNQVHSVCW 440 (545)
Q Consensus 375 lwd~~~~~--~~~~~~--~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----------h~~~I~~l~~ 440 (545)
.|+..... ...... .......+.+.+++..+++...++.+..+|...+........ .......+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~ 172 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR 172 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE
T ss_pred EEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc
Confidence 77765432 222222 234478899999977766666788999999988754433221 1234566776
Q ss_pred cCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEe--ccC
Q 009059 441 NTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAH 516 (545)
Q Consensus 441 sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h 516 (545)
+. .+++.+. .+.|..+++...........+ ........++++++|+.+++...++.|..|+......... ...
T Consensus 173 ~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~ 249 (302)
T d2p4oa1 173 FG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG 249 (302)
T ss_dssp ET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred cC--CceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence 53 4444444 778888888764332222222 2234466799999999777777788999998776543322 234
Q ss_pred CCCeeEEEE---eCCCCEEEEEeCC
Q 009059 517 DKLVSSLAA---STVNGMVASASHD 538 (545)
Q Consensus 517 ~~~V~~l~~---spd~~~las~s~D 538 (545)
-..+++++| .+|++.|+.++..
T Consensus 250 ~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 250 VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCceEEEEcCCCCCCCEEEEECCC
Confidence 456889999 6788877766544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=1.2e-08 Score=95.20 Aligned_cols=236 Identities=9% Similarity=-0.020 Sum_probs=149.7
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 265 KVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~-~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
.-..+++.++|++.++.. ..+.|..++............-......|++.+++.++++....+.+++++-.+... +..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~~~ 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLP 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-eee
Confidence 357899999999766654 456777776554333222222223457889999998887777677777665544332 222
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.. ......++++.+++. ++++-..+..+..++........ ..........+++.++++.+++...++.|..+|....
T Consensus 94 ~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 94 FD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred ee-eeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 22 235678999999875 55455556667777765433222 1122245678999999887777777889999998866
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
.........-.....|+++++|+++++.. .+.|..++..... ..+ .....-.....+++++++..+++-..++.|+
T Consensus 172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--STV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC--CEE-CCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe--EEE-EccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 54443334556789999999999888777 6678888765431 111 1112234568899999987555544555666
Q ss_pred EEeCC
Q 009059 502 LWNMT 506 (545)
Q Consensus 502 iwd~~ 506 (545)
.++..
T Consensus 249 ~i~~~ 253 (260)
T d1rwia_ 249 KLTSL 253 (260)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 55543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.11 E-value=6.5e-08 Score=92.71 Aligned_cols=238 Identities=10% Similarity=0.080 Sum_probs=154.7
Q ss_pred CeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCeEEEEecc----CCccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 009059 265 KVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSADRTVRVWD 333 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~-------dg~I~lwd~~~~~~~~~l~~----h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd 333 (545)
....++|.++|+++++... +++|..||..++........ .......++|.+++..|+++.....|..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 3567899999998876432 46789999888765543322 123467899999999888888777888899
Q ss_pred CCCCCeeeeEeccCc---ccEEEEEEeCCCCcEEEEEcC---------------CCcEEEEECCCCceeeEEeccCCeeE
Q 009059 334 TENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFKCQSGATQ 395 (545)
Q Consensus 334 ~~~~~~~~~~~~~h~---~~V~~l~~~p~~~~ll~s~s~---------------dg~I~lwd~~~~~~~~~~~~~~~v~~ 395 (545)
.......+....... ...+.+++.++|. +.++-.. .|.|+.++.. ++.......-...+.
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG 176 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence 875432221111111 1357789999975 4434321 2345555543 444444443345678
Q ss_pred EEEeCCCC----EEEEE-ECCCeEEEEECCCC-EE-----EEEecC-CCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q 009059 396 MRFQPRLG----RILAA-AIENYISILDVETQ-VC-----RLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 462 (545)
Q Consensus 396 l~~sp~~~----~l~~~-~~dg~I~i~d~~~~-~~-----~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~ 462 (545)
++|++++. .|+++ +..+.|..||+... .. ...+.+ +......+++..+|+++++.. .+.|.+||...
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 99998764 45555 45788999987532 22 122222 223467899999999877766 77999999876
Q ss_pred CCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCC
Q 009059 463 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 507 (545)
Q Consensus 463 ~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~ 507 (545)
+ ..+..+........+++|.++++.|++.. .++.|+.+++..
T Consensus 257 g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 257 G---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp B---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred C---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 6 33344455556789999999998666655 456888888743
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.11 E-value=2.6e-07 Score=88.61 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=151.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPD 338 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~d----g~I~vwd~~~~~ 338 (545)
...+..++|.++|++.++-...+.|+.|+.++.+....+.........|+|.++|+++++...+ +.|...+.....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3446789999999988877788999999988877666665566678999999999887776432 334444544433
Q ss_pred eeeeEeccC---cccEEEEEEeCCCCcEEEEEcC------CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 339 YSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 339 ~~~~~~~~h---~~~V~~l~~~p~~~~ll~s~s~------dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
+..+..+ ...+..+++.++|. ++++... .+.+..++............-...+.++|+++++.|+++.
T Consensus 119 --~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 119 --LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp --CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred --eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence 2222212 23578899999985 4444322 2346666665444433333334578899999998776665
Q ss_pred C-CCeEEEEECCCC----EEE----EEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEee-----
Q 009059 410 I-ENYISILDVETQ----VCR----LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC----- 474 (545)
Q Consensus 410 ~-dg~I~i~d~~~~----~~~----~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~----- 474 (545)
. .+.|+.||+... ... ............+++..+|++.++.. .+.|.+||. .+ +.+.++..
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~~ 271 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRDE 271 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGGG
T ss_pred ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCcCC
Confidence 4 789999987632 111 11111223467899999999877776 789999995 44 45555542
Q ss_pred -CCCceEEEEEcCCCCEEEEEEcC
Q 009059 475 -TGNKFHSCVFHPTFPSLLVIGCY 497 (545)
Q Consensus 475 -~~~~v~~~~~sp~~~~l~~~~~d 497 (545)
+...+.+++|.++...+++...+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 272 GHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CcCceeeeEEEeCCCCEEEEEcCC
Confidence 23457899999988877776653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=5e-07 Score=84.71 Aligned_cols=233 Identities=10% Similarity=0.161 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc------CCccEEEEEEcCCCC-EEEEE-eCCCeEEEEECCC
Q 009059 265 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSLS-RLATS-SADRTVRVWDTEN 336 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~------h~~~V~~l~~sp~~~-~l~t~-s~dg~I~vwd~~~ 336 (545)
....++++++|+++++-...+.|++||.+ ++.+..+.. .......+++..+.. ++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 46789999999988887778899999965 666665532 222345666665543 44433 334577777764
Q ss_pred CCeeeeEe-ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc---CCeeEEEEeCCCCEEEEEECCC
Q 009059 337 PDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN 412 (545)
Q Consensus 337 ~~~~~~~~-~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~---~~v~~l~~sp~~~~l~~~~~dg 412 (545)
+.. ...+ .........+++.+++. ++++....+.+.+++.. ++.+..+... .....+++.+++..+++....+
T Consensus 102 g~~-~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 102 GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred ccc-eeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence 333 3333 33456678899998875 44455667778888865 5556655432 3467888999877666666788
Q ss_pred eEEEEECCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEee--CCCceEEEEEcC
Q 009059 413 YISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 486 (545)
Q Consensus 413 ~I~i~d~~~~~~~~~~~--~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~--~~~~v~~~~~sp 486 (545)
.|++||... +.+..+. +.......|+++++|+++++-. ++.|.+|+.. + +.+..+.. .......+++.+
T Consensus 179 ~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 179 CVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp EEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred ceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeC
Confidence 999999754 4555553 3455689999999999887755 3479999843 3 44544433 234678999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC
Q 009059 487 TFPSLLVIGCYETLELWNMTEN 508 (545)
Q Consensus 487 ~~~~l~~~~~dg~I~iwd~~~~ 508 (545)
++. |+++..++.|++|.....
T Consensus 254 dG~-l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGS-VVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTE-EEEEETTTEEEEEECSCC
T ss_pred CCc-EEEEeCCCeEEEEEeeee
Confidence 996 566678889999987654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=6e-08 Score=98.25 Aligned_cols=296 Identities=11% Similarity=0.036 Sum_probs=169.0
Q ss_pred eeeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCeEEEEe--ccCCccEE
Q 009059 241 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWIT 309 (545)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~---------~dg~I~lwd~~~~~~~~~l--~~h~~~V~ 309 (545)
.+.+++..++..-..+..-....-.+....||||+++|+... ..+.+.+||+.++...... ......+.
T Consensus 38 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~ 117 (465)
T d1xfda1 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ 117 (465)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred cEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccc
Confidence 456677766654222222222334677889999999988764 3467899999887654332 23344566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccE-----------------EEEEEeCCCCcEEEEEcCCCc
Q 009059 310 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNSE 372 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~p~~~~ll~s~s~dg~ 372 (545)
...|+|||+.||... ++.|.+.+...+.....+..+..+.| .++.|+|||+.+++.--.+..
T Consensus 118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~ 196 (465)
T d1xfda1 118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (465)
T ss_dssp BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence 789999999999875 66788888876554222222222222 467899999988876544444
Q ss_pred EE---------------------------------EEECCCCceeeEEecc-------CCeeEEEEeCCCCEEEEEEC-C
Q 009059 373 IR---------------------------------YWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAAI-E 411 (545)
Q Consensus 373 I~---------------------------------lwd~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~~~~~-d 411 (545)
|. ++|+.++......... .-+..+.|.+++..++.... +
T Consensus 197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~ 276 (465)
T d1xfda1 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (465)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence 33 3444332221111000 01466889888664444333 2
Q ss_pred ---CeEEEEECCCCEEEEEecC-CCCCE----EEEEEcCCCCEEE---EEe-CC--cEEEEEcCCC---CCcceEEEEee
Q 009059 412 ---NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLA---SVS-DE--LVRVWSIGSG---SKGECIHELSC 474 (545)
Q Consensus 412 ---g~I~i~d~~~~~~~~~~~~-h~~~I----~~l~~sp~g~~l~---s~s-dg--~I~vwd~~~~---~~~~~i~~~~~ 474 (545)
..|.++|..++++...+.. ....| ....|+++|+.++ ... +| .++.+.+... .....+..+..
T Consensus 277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~ 356 (465)
T d1xfda1 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (465)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEecc
Confidence 2688899999876654432 22222 3457899997432 222 33 4444443211 11122223333
Q ss_pred CCCceEEE-EEcCCCCEEEEEEcCC-----eEEEEeCCCCeEEE-e---ccCCCCeeEEEEeCCCCEEEEEeC
Q 009059 475 TGNKFHSC-VFHPTFPSLLVIGCYE-----TLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASH 537 (545)
Q Consensus 475 ~~~~v~~~-~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~-~---~~h~~~V~~l~~spd~~~las~s~ 537 (545)
..-.|..+ .|+.+++.|+..+... .|+-.++..+.... + .........+.|||++++++....
T Consensus 357 G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 34445554 6888888776555422 35555555443321 1 134456779999999998885443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.01 E-value=8e-07 Score=85.09 Aligned_cols=229 Identities=9% Similarity=0.051 Sum_probs=147.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEc---CCCcEEEEECCCCc
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGS 382 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s---~dg~I~lwd~~~~~ 382 (545)
..+..++|.++|+++++-...+.|..|+...... ...+.........+++.++|..+++..+ ..+.|...+.....
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3456799999999777777889999999876553 4444455667899999999864443222 13345566666555
Q ss_pred eeeEEec---cCCeeEEEEeCCCCEEEEEEC------CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--
Q 009059 383 CAGVFKC---QSGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 451 (545)
Q Consensus 383 ~~~~~~~---~~~v~~l~~sp~~~~l~~~~~------dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-- 451 (545)
....... ......+.+.++|..+++... .+.+..++........... .-...+.|+|+|+++.|+.+.
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGG
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEeccc
Confidence 4444332 234678999999765444322 2346666665443322222 234568899999998776665
Q ss_pred CCcEEEEEcCCCCCcce-E----EEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-Eec------cCCCC
Q 009059 452 DELVRVWSIGSGSKGEC-I----HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS------AHDKL 519 (545)
Q Consensus 452 dg~I~vwd~~~~~~~~~-i----~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~------~h~~~ 519 (545)
.+.|..|++........ . ............+++..+|+..++....+.|.+||- +++.+ .+. ++...
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~ 276 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 276 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence 77999999865322111 1 111112234568999999997777778889999996 56555 332 34456
Q ss_pred eeEEEEeCCCCEEEEEeC
Q 009059 520 VSSLAASTVNGMVASASH 537 (545)
Q Consensus 520 V~~l~~spd~~~las~s~ 537 (545)
+++++|.+++..+++...
T Consensus 277 ~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 277 STHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CCEEEECTTSCEEEEEEE
T ss_pred eeeEEEeCCCCEEEEEcC
Confidence 889999998876665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=6.7e-07 Score=83.83 Aligned_cols=229 Identities=13% Similarity=0.131 Sum_probs=156.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc------CcccEEEEEEeCCCCcEEEE-EcCCCcEEEEECC
Q 009059 307 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSIN 379 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~------h~~~V~~l~~~p~~~~ll~s-~s~dg~I~lwd~~ 379 (545)
....|++.++++++++-..+..|++||.+ +.. +..+.. .......+++..+...+++. .+.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCE-EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 46789999999988777778899999976 343 333321 22235566666665444443 4455678778764
Q ss_pred CCceeeEEec--cCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe-CCc
Q 009059 380 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DEL 454 (545)
Q Consensus 380 ~~~~~~~~~~--~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~--~~h~~~I~~l~~sp~g~~l~s~s-dg~ 454 (545)
+.....+.. ......+++.+++..+++....+.+.+++... +.+..+ ..+......+++.+++.++++.. .+.
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~ 179 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 179 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccc
Confidence 555555542 23467899999987777767778888888654 445544 34566789999999998887777 779
Q ss_pred EEEEEcCCCCCcceEEEEe--eCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEE-Eec--cCCCCeeEEEEeCC
Q 009059 455 VRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL-TLS--AHDKLVSSLAASTV 528 (545)
Q Consensus 455 I~vwd~~~~~~~~~i~~~~--~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~-~~~--~h~~~V~~l~~spd 528 (545)
|++||... ..+..+. +.......+++.++++.+++-.. +..|.+|+.. ++.+ .+. ........|++.++
T Consensus 180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence 99999653 3444443 23445789999999985554333 3479999854 5544 332 33346889999999
Q ss_pred CCEEEEEeCCCcEEEcC
Q 009059 529 NGMVASASHDKCVKIWK 545 (545)
Q Consensus 529 ~~~las~s~Dg~I~iWd 545 (545)
|.++ +++.+.+|++|+
T Consensus 255 G~l~-V~~~n~~v~~fr 270 (279)
T d1q7fa_ 255 GSVV-LASKDYRLYIYR 270 (279)
T ss_dssp TEEE-EEETTTEEEEEE
T ss_pred CcEE-EEeCCCeEEEEE
Confidence 8655 456789999985
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.99 E-value=1.9e-07 Score=89.37 Aligned_cols=235 Identities=9% Similarity=-0.021 Sum_probs=147.4
Q ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCCeeeeEe---ccCcccEEEEEEeCCCCcEEEEEcCCCcEEEE
Q 009059 307 WITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 376 (545)
Q Consensus 307 ~V~~l~~sp~~~~l~t~s~-------dg~I~vwd~~~~~~~~~~~---~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lw 376 (545)
....++|.++|+++++... +|.|..||..++....... ....+....++|.+++..++ +++....|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeEEEE
Confidence 3566899999997776433 4678889988765422211 11123467899999986666 44445668888
Q ss_pred ECCCCceeeEEec-c----CCeeEEEEeCCCCEEEEEEC---------------CCeEEEEECCCCEEEEEecCCCCCEE
Q 009059 377 SINNGSCAGVFKC-Q----SGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQGHKNQVH 436 (545)
Q Consensus 377 d~~~~~~~~~~~~-~----~~v~~l~~sp~~~~l~~~~~---------------dg~I~i~d~~~~~~~~~~~~h~~~I~ 436 (545)
+............ . ...+.+.+.++|..+++-.. .|.|+.++... +...... .-...+
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~-~~~~pN 175 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT-AFQFPN 175 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE-EESSEE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC-Ccceee
Confidence 8875543321111 1 13578999999776665321 23566665543 2222222 233457
Q ss_pred EEEEcCCCC----EEEEEe--CCcEEEEEcCCCCCcce---EEEEee-CCCceEEEEEcCCCCEEEEEEcCCeEEEEeCC
Q 009059 437 SVCWNTSGE----YLASVS--DELVRVWSIGSGSKGEC---IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 506 (545)
Q Consensus 437 ~l~~sp~g~----~l~s~s--dg~I~vwd~~~~~~~~~---i~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~ 506 (545)
.++|++++. +|+++. .+.|..||+........ ...+.. .......+++..+|+.+++....+.|.+||.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 899988764 455544 67899998764322111 111211 12245689999999977777778899999998
Q ss_pred CCeEE-EeccCCCCeeEEEEeCCCC-EEEEEeCCCcEEEc
Q 009059 507 ENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 544 (545)
Q Consensus 507 ~~~~~-~~~~h~~~V~~l~~spd~~-~las~s~Dg~I~iW 544 (545)
.++.. .+......+++++|.|+++ ++++.+.+|.|...
T Consensus 256 ~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 256 GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 77655 4555557789999999997 55666677877653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.6e-07 Score=94.95 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=155.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEecc---CCccEEEEEEcCCCCEEEEEe---------CCCeEEEEECCC
Q 009059 269 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSS---------ADRTVRVWDTEN 336 (545)
Q Consensus 269 l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~---h~~~V~~l~~sp~~~~l~t~s---------~dg~I~vwd~~~ 336 (545)
..|.+++.++.. ..+|.|.+||+.+++....+.. ....+....|+||+++++... ..+.+.++|+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 357788776654 4578999999988776544433 223567788999999988764 357889999987
Q ss_pred CCee-eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC-------------------CeeEE
Q 009059 337 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------GATQM 396 (545)
Q Consensus 337 ~~~~-~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~-------------------~v~~l 396 (545)
+... +.........+....|+|+|..++++. ++.|++.+..++..++...... .-..+
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~ 178 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence 6631 111222344566788999999988765 6779998887766554432111 12467
Q ss_pred EEeCCCCEEEEEECC-Ce---------------------------------EEEEECCCCEEEEEec------CCCCCEE
Q 009059 397 RFQPRLGRILAAAIE-NY---------------------------------ISILDVETQVCRLKLQ------GHKNQVH 436 (545)
Q Consensus 397 ~~sp~~~~l~~~~~d-g~---------------------------------I~i~d~~~~~~~~~~~------~h~~~I~ 436 (545)
-|+|+|.+|+....| .. +.++|+.++....... .....+.
T Consensus 179 ~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 179 WWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred EECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceee
Confidence 799999999886532 22 4455554432221111 1122467
Q ss_pred EEEEcCCCCEEEEEeC--C---cEEEEEcCCCCCcceEEEEeeCCCce----EEEEEcCCCCEEEEE--E-cCC--eEEE
Q 009059 437 SVCWNTSGEYLASVSD--E---LVRVWSIGSGSKGECIHELSCTGNKF----HSCVFHPTFPSLLVI--G-CYE--TLEL 502 (545)
Q Consensus 437 ~l~~sp~g~~l~s~sd--g---~I~vwd~~~~~~~~~i~~~~~~~~~v----~~~~~sp~~~~l~~~--~-~dg--~I~i 502 (545)
.+.|++++++++...+ . .|.++|..++.......+ .....| ....|+++|+.++.. . .+| .++.
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e--~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~ 336 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE--cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence 8899999987776552 2 688899888743222211 122222 345789999854332 2 222 4554
Q ss_pred EeC-------CCCeEEEeccCCCCeeEE-EEeCCCCEEE
Q 009059 503 WNM-------TENKTLTLSAHDKLVSSL-AASTVNGMVA 533 (545)
Q Consensus 503 wd~-------~~~~~~~~~~h~~~V~~l-~~spd~~~la 533 (545)
+++ ..+....+....-.|..+ .|+.+++.|.
T Consensus 337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (465)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence 432 122222333334445554 5777776554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.74 E-value=2.7e-05 Score=73.19 Aligned_cols=221 Identities=14% Similarity=0.103 Sum_probs=149.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 268 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 268 ~l~~sp-dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+..|.+ ++.++.+--..+.|..||.++++... +. ....+.++++.+++.++++ +.+ -|.++|..+++........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 466776 44454444467899999998876542 22 3456889999988876665 455 4889999887642221111
Q ss_pred ---CcccEEEEEEeCCCCcEEEEEcC---CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEEC
Q 009059 347 ---HSTTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 419 (545)
Q Consensus 347 ---h~~~V~~l~~~p~~~~ll~s~s~---dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~ 419 (545)
....++.+.+.|+|...+.+... .+.-.+|.+..++.............++|+++++.++.+.. .+.|+.|++
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~ 177 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPL 177 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeee
Confidence 12358889999998654433221 23456677777776666655566788999999888776665 678999986
Q ss_pred CC------C--EEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEc-CCCC
Q 009059 420 ET------Q--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFP 489 (545)
Q Consensus 420 ~~------~--~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~s-p~~~ 489 (545)
.. + .....+.+..+....+++..+|++.++.. .+.|.+||.. + +.+..+......+++|+|- ++.+
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTSC
T ss_pred cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCCceEEEEEeCCCCC
Confidence 42 1 22233344556788999999999887776 7789999953 4 5666666656779999995 6777
Q ss_pred EEEEEEc
Q 009059 490 SLLVIGC 496 (545)
Q Consensus 490 ~l~~~~~ 496 (545)
.|++.+.
T Consensus 254 ~LyvTta 260 (295)
T d2ghsa1 254 RLLVTSA 260 (295)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 7776654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.65 E-value=4.1e-05 Score=71.84 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=141.1
Q ss_pred EEEEcCCCCEEE-EEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEe
Q 009059 310 DVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 388 (545)
Q Consensus 310 ~l~~sp~~~~l~-t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~ 388 (545)
...|.+....|+ +=-..+.|..||..++.. ..+. ....+.++++.+++ .+++++ .+ .|.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~~-~~~~~~~i~~~~dg-~l~va~-~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEEE-CCCCcEEEEEecCC-CEEEEE-eC-ccEEeecccceeeEEee
Confidence 456776444444 333567899999887654 2232 34568899998886 455343 34 59999999887655443
Q ss_pred ccC-----CeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEE
Q 009059 389 CQS-----GATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRV 457 (545)
Q Consensus 389 ~~~-----~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~v 457 (545)
... .+..+.+.++|...++... .+.-.+|.+..++....+.. -...+.++|+++++.++... .+.|..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence 221 3678899999776555432 23456666666665544432 34568899999998776665 668999
Q ss_pred EEcCCCCC-----cceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEe-CCCC
Q 009059 458 WSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS-TVNG 530 (545)
Q Consensus 458 wd~~~~~~-----~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s-pd~~ 530 (545)
|++..... ................+++..+|+..++.-..+.|..||-. ++.+ .+.--...+++++|- +|.+
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSC
T ss_pred eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCC
Confidence 98753211 11222333345568889999999866666677899999965 5555 444334579999996 5665
Q ss_pred EE-EEEe
Q 009059 531 MV-ASAS 536 (545)
Q Consensus 531 ~l-as~s 536 (545)
.| +|..
T Consensus 254 ~LyvTta 260 (295)
T d2ghsa1 254 RLLVTSA 260 (295)
T ss_dssp EEEEEEB
T ss_pred EEEEEEC
Confidence 44 4433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.63 E-value=2.4e-06 Score=79.15 Aligned_cols=231 Identities=11% Similarity=0.067 Sum_probs=131.7
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCCeee
Q 009059 270 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENPDYSL 341 (545)
Q Consensus 270 ~~spd--g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~-d-----g~I~vwd~~~~~~~~ 341 (545)
..+|| |+.+|..+ ++.|.+.|+.+++.. .+..+...+...+|+|||++||.... + ..|.+++...+..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~-- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence 45788 99988765 568999999987765 45566777899999999999986643 2 2467777776543
Q ss_pred eEecc-------CcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEE
Q 009059 342 RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 409 (545)
Q Consensus 342 ~~~~~-------h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 409 (545)
..+.. .........|+|+++.++++...+ ..+...+...+...... ...... .+.+++..++...
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 157 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATH-ILFADGRRVIGRN 157 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSE-EEEETTEEEEEES
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccce-eeecCCCeEEEee
Confidence 22221 223456788999998777654322 23445555544432221 122222 3344444444332
Q ss_pred C-CC-----------eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--cEEEEEcCCCCCcceEEEEeeC
Q 009059 410 I-EN-----------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 410 ~-dg-----------~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg--~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
. +. ...+............ .+........++++..+.....++ .|.++|+.+... . .+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~ 232 (281)
T d1k32a2 158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF 232 (281)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC
T ss_pred ccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-E---EeecC
Confidence 2 11 1222222222222222 233444555666553322222233 688888876532 1 12211
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEEEec
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS 514 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 514 (545)
.......|+|+|+.|+.. .++.|+++|+.+++...+.
T Consensus 233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred -CCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 222334689999987764 4678999999999877553
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.44 E-value=3.3e-05 Score=74.30 Aligned_cols=257 Identities=11% Similarity=0.062 Sum_probs=157.3
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEecc----------CC-----------------------------ccEE--EEEEcC-
Q 009059 278 LATGGHDKKAVLWCTESFTVKSTLEE----------HT-----------------------------QWIT--DVRFSP- 315 (545)
Q Consensus 278 latg~~dg~I~lwd~~~~~~~~~l~~----------h~-----------------------------~~V~--~l~~sp- 315 (545)
+.+|+..|.|+|+-+.+++.+..+.- .+ +... .+.|..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 56788889999998888877766421 00 0111 344433
Q ss_pred --CCCEEEEEe-CCCeEEEEECCCCCeeeeEeccCcccEEEEEEe--CCCCcEEEEEc------CC-----------CcE
Q 009059 316 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NN-----------SEI 373 (545)
Q Consensus 316 --~~~~l~t~s-~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~--p~~~~ll~s~s------~d-----------g~I 373 (545)
||++|++.. .+..|.+.|+.+.+............+..+... |+..++++.+. .| +.+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 688888776 578999999998764221122234455666654 34344443221 11 346
Q ss_pred EEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCC---------------eE-----------------------E
Q 009059 374 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------YI-----------------------S 415 (545)
Q Consensus 374 ~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg---------------~I-----------------------~ 415 (545)
.++|..+.+....+........+.++++|+++++.+.+. .+ .
T Consensus 176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~ 255 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 255 (459)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence 788999999888888888888999999999998887431 13 3
Q ss_pred EEECCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCC--------CCcceEEEEeeCCCceEEE
Q 009059 416 ILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG--------SKGECIHELSCTGNKFHSC 482 (545)
Q Consensus 416 i~d~~~~---~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~--------~~~~~i~~~~~~~~~v~~~ 482 (545)
+.|.+.. ..+..+. -......+.++|||+++++++ +.++.|+|++.. ....++......+-.....
T Consensus 256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht 334 (459)
T d1fwxa2 256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT 334 (459)
T ss_dssp EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence 3333321 1111111 122356789999999999998 889999999632 1122333322334455667
Q ss_pred EEcCCCCEEEEEEcCCeEEEEeCCCC----------eEE-EeccCCCCeeEE------EEeCCCCEEEEEe
Q 009059 483 VFHPTFPSLLVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSL------AASTVNGMVASAS 536 (545)
Q Consensus 483 ~~sp~~~~l~~~~~dg~I~iwd~~~~----------~~~-~~~~h~~~V~~l------~~spd~~~las~s 536 (545)
+|+..|.-..+.--|..|.-|++... ..+ .+.-|-. +-.+ ...|+|++|++..
T Consensus 335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEec
Confidence 88888864555557889999998422 233 3322211 1122 3467889988875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.43 E-value=1.7e-05 Score=73.10 Aligned_cols=220 Identities=8% Similarity=0.047 Sum_probs=128.7
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCC-----cEEEEECCCCcee
Q 009059 312 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA 384 (545)
Q Consensus 312 ~~sp~--~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg-----~I~lwd~~~~~~~ 384 (545)
..+|+ |+.++..+ ++.|.+.|+..+. .+.+..+.+.+....|+|||+.++++...++ .|.+++..+++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 35788 88888765 4568888998765 4566767788999999999998887765433 4788888877765
Q ss_pred eEEecc-------CCeeEEEEeCCCCEEEEEECC------CeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe
Q 009059 385 GVFKCQ-------SGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 451 (545)
Q Consensus 385 ~~~~~~-------~~v~~l~~sp~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s 451 (545)
...... .......|+|+++.++..... ..+...+...+...... ......+.+.+.+.+++...
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNT 158 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESC
T ss_pred EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeec
Confidence 432211 234678899999888876542 24566666666544322 22222333333333443332
Q ss_pred -CC-----------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCC--eEEEEeCCCCeEEEeccC
Q 009059 452 -DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTLSAH 516 (545)
Q Consensus 452 -dg-----------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg--~I~iwd~~~~~~~~~~~h 516 (545)
+. ...++.... .................+.++. ++... .++ .|+++|+.+++...+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~~lt~~ 232 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNS----GAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLRKHTSF 232 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEET----TEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred cccceeeeeccCCcceeeeeccc----cceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceEEeecC
Confidence 11 111111111 1111222233344445555543 33333 333 789999988877755443
Q ss_pred CCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 517 DKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 517 ~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.. .....|+|||+.|+.. .++.|+++|
T Consensus 233 ~~-~~~~~~SpDG~~I~f~-~~~~l~~~d 259 (281)
T d1k32a2 233 TD-YYPRHLNTDGRRILFS-KGGSIYIFN 259 (281)
T ss_dssp CS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred CC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence 32 2335689999987764 357777764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=0.00067 Score=62.03 Aligned_cols=245 Identities=8% Similarity=-0.015 Sum_probs=155.4
Q ss_pred CEEEEEeCCCcEEEEEcCCCeE-----EEEeccCCccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCCeeeeEeccCcc
Q 009059 276 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST 349 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~-----~~~l~~h~~~V~~l~~sp~~~~l~t~-s~dg~I~vwd~~~~~~~~~~~~~h~~ 349 (545)
.+|+.+. .+.|+-.+++.... ...+..+...+..|+|....+.|+-+ ..++.|...++..... ...+.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence 3444443 34676666654321 22334455568889998877766655 4567898888875543 333333345
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEECC---CeEEEEECCCCEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 425 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~d---g~I~i~d~~~~~~~ 425 (545)
.+.++++..-++.+.++-...+.|.+.++....+...+.. ...+..+++.|..++++..... ..|...++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 7889999887777887777788999999986654333332 2458899999998888876543 24665666654333
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEE
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLEL 502 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~i 502 (545)
......-.....|++++.++.|..+. .+.|...++... .....+.. ......+++. +.+|+... ..+.|..
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEE
Confidence 33333445778999998888776665 668999998654 22222232 2334567775 45566665 4568999
Q ss_pred EeCCCCeEEEec--cCCCCeeEEEEeCC
Q 009059 503 WNMTENKTLTLS--AHDKLVSSLAASTV 528 (545)
Q Consensus 503 wd~~~~~~~~~~--~h~~~V~~l~~spd 528 (545)
.|..+++..... ........|++.++
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 234 MDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EECCCCccceEECCCCCCCcceEEEeCC
Confidence 999888876332 33344556665543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.13 E-value=0.0027 Score=57.74 Aligned_cols=218 Identities=7% Similarity=-0.013 Sum_probs=138.2
Q ss_pred EEEEEeCCCeEEEEECCCCCee----eeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEecc-CCe
Q 009059 319 RLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~----~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~-~~v 393 (545)
+|+.+. .+.|+-.+++..... ...+..+...+.+++|++..+.++.+-..++.|+..++........+... ..+
T Consensus 3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 444443 346776776543311 12233344568889999888888877777888999998866554444322 468
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCc--EEEEEcCCCCCcce
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGEC 468 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~--I~vwd~~~~~~~~~ 468 (545)
..+++..-++.|+.+.. .+.|.+.++........+......+..++++|...+|+... .+. |..-++.... .
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~ 158 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---R 158 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---C
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---c
Confidence 89999987777776654 67999999986654443444446789999999887777654 223 4444554321 1
Q ss_pred EEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCCCCeEEEeccCCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 009059 469 IHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK 542 (545)
Q Consensus 469 i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd~~~las~s-~Dg~I~ 542 (545)
.......-.....+++.+....|+.+. ..+.|...|+.......+........+|++. +.+|.... ..+.|.
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVI 232 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEE
Confidence 122222335668999998888887775 4568999999877655333222345678875 44555544 344444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.11 E-value=0.0006 Score=65.72 Aligned_cols=272 Identities=9% Similarity=0.044 Sum_probs=146.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----------cEEEEEcCCCeEEE--Ee-ccCCccEEEEEEcCCCCEEEEEeCC-CeE
Q 009059 265 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVKS--TL-EEHTQWITDVRFSPSLSRLATSSAD-RTV 329 (545)
Q Consensus 265 ~V~~l~~spdg~~latg~~dg-----------~I~lwd~~~~~~~~--~l-~~h~~~V~~l~~sp~~~~l~t~s~d-g~I 329 (545)
++...+...+|++++.|+.+. .+.+||..+++-.. .. ..|.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 344455667899999888531 37799998764321 11 2233334456788999999988765 589
Q ss_pred EEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC------CcEEEEECCCCceeeEEecc-------------
Q 009059 330 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQ------------- 390 (545)
Q Consensus 330 ~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d------g~I~lwd~~~~~~~~~~~~~------------- 390 (545)
.+||..+..............-.+.+..+++..++ .++.+ ..+.+||+.+.+....-...
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 179 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred eEecCccCcccccccccccccccceeeecCCceee-eccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence 99999876542211111112223456667765444 55422 36899999876543211000
Q ss_pred --CCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEec--C----CCC--CEEEEEE-cCCCCEEEEEe--CC----
Q 009059 391 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--G----HKN--QVHSVCW-NTSGEYLASVS--DE---- 453 (545)
Q Consensus 391 --~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~----h~~--~I~~l~~-sp~g~~l~s~s--dg---- 453 (545)
.....+...+++..++.+...+.+.+++..+........ . +.. .-.++.+ ..++++++.|+ ++
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 011122333455556666667778888887765433211 0 111 1122222 34566666665 21
Q ss_pred ---cEEEEEcCCCCCcceEEEEe---eCCCceEEEEEcCCCCEEEEEEcCC-----------eEEEEeCCCCeEEEeccC
Q 009059 454 ---LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYE-----------TLELWNMTENKTLTLSAH 516 (545)
Q Consensus 454 ---~I~vwd~~~~~~~~~i~~~~---~~~~~v~~~~~sp~~~~l~~~~~dg-----------~I~iwd~~~~~~~~~~~h 516 (545)
...+.++............. .....-.+....++++.+++|+.+. .+.+||..+.+...+...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence 33444443322111111111 1112234566678999888887531 578999988876544321
Q ss_pred C--CCe-eEEEEeCCCCEEEEEeC
Q 009059 517 D--KLV-SSLAASTVNGMVASASH 537 (545)
Q Consensus 517 ~--~~V-~~l~~spd~~~las~s~ 537 (545)
. ..- ....+.+||++|+.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEEECCCCEEEEEeCC
Confidence 1 111 22345789999999884
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.0038 Score=56.84 Aligned_cols=230 Identities=9% Similarity=-0.025 Sum_probs=147.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCe--ee-eEeccCcccEE
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY--SL-RTFTGHSTTVM 352 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s-~dg~I~vwd~~~~~~--~~-~~~~~h~~~V~ 352 (545)
+|+.+.. ..|+-.++++......+. ....+..|+|.+..+.|+-.. ..+.|...++..... .. ..+......+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 4444443 468888887755444444 445678999998777776654 456677666653211 11 22233335577
Q ss_pred EEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEec-cCCeeEEEEeCCCCEEEEEEC--CCeEEEEECCCCEEEEEec
Q 009059 353 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~ 429 (545)
.+++.+.+..+.++-...+.|.+.++........... ......++++|..++++.... .+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 8898887788888877888999999987665444443 345889999998888877654 4568778887654444444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCCeEEEEeCC
Q 009059 430 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 506 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~I~iwd~~ 506 (545)
..-.....+++++.+..|..+. .+.|...++..... ..+............+++. +.+|+.+. .++.|+..+..
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence 3446789999999888777765 66899999865422 2222222222345667766 34465554 45688888877
Q ss_pred CCeEE
Q 009059 507 ENKTL 511 (545)
Q Consensus 507 ~~~~~ 511 (545)
++...
T Consensus 238 ~g~~~ 242 (266)
T d1ijqa1 238 TGSDV 242 (266)
T ss_dssp TCCCC
T ss_pred CCcce
Confidence 76544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.95 E-value=0.0065 Score=55.05 Aligned_cols=248 Identities=10% Similarity=0.162 Sum_probs=154.7
Q ss_pred CCcEEEEEcCCCeE-EEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCc
Q 009059 284 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 362 (545)
Q Consensus 284 dg~I~lwd~~~~~~-~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 362 (545)
...|.|.|+..... .+.--.-+ +.-.+|..+.||.-+ ..++.+||+++... ++.+.-. ..|.--.|-.+. .
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~k-lks~~~~-e~VvfWkWis~~-~ 115 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTMT-DDVTFWKWISLN-T 115 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEECS-SCCCEEEESSSS-E
T ss_pred CceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhh-hceEEcC-CCcEEEEecCCC-E
Confidence 34788888875442 32222222 234678888877766 56899999998664 6666533 467666776542 3
Q ss_pred EEEEEcCCCcEEEEECCC-CceeeEEecc-----CCeeEEEEeCCCCEEEEEEC-------CCeEEEEECCCCEEEEEec
Q 009059 363 LLCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 363 ll~s~s~dg~I~lwd~~~-~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~~~-------dg~I~i~d~~~~~~~~~~~ 429 (545)
|. ... +..|+-|+++. ..+.+.+..+ ..|.....+++.++++..+- .|.+.+|..+.+. -..++
T Consensus 116 L~-lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ie 192 (327)
T d1utca2 116 VA-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 192 (327)
T ss_dssp EE-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC
T ss_pred EE-EEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Ccccc
Confidence 33 333 66899999954 3455666532 33777788888888876552 3678899988764 33466
Q ss_pred CCCCCEEEEEEcCCC---CEEEEEe----CCcEEEEEcCCCCCc-----ceEEEEe----eCCCceEEEEEcCCCCEEEE
Q 009059 430 GHKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGSKG-----ECIHELS----CTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~h~~~I~~l~~sp~g---~~l~s~s----dg~I~vwd~~~~~~~-----~~i~~~~----~~~~~v~~~~~sp~~~~l~~ 493 (545)
+|.+.-..+.+.-+. .+++.+. .+.+.|.++...... +....+. ....-..++.+++....++.
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 665444333332111 2333333 248999998764221 1111211 11344678889999999999
Q ss_pred EEcCCeEEEEeCCCCeEEEe-ccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 494 IGCYETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 494 ~~~dg~I~iwd~~~~~~~~~-~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.+..|.|++||++++.++.. .-....|..-+-..+..=+++...+|.|.
T Consensus 273 iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 273 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 99999999999999999833 33455666555555544555556777653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.88 E-value=0.01 Score=57.95 Aligned_cols=239 Identities=8% Similarity=0.020 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCeEEE-EeccCCccEEEEEEcCCCCEEEEEeCC-------------
Q 009059 266 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSAD------------- 326 (545)
Q Consensus 266 V~~l~~spdg~~latg~~-----dg~I~lwd~~~~~~~~-~l~~h~~~V~~l~~sp~~~~l~t~s~d------------- 326 (545)
+..+++|||+++||.+-. ...|+++|+.+++.+. .+.. .....++|.+|++.|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 345678999999886532 2479999999998764 2321 112468899999988765433
Q ss_pred ---CeEEEEECCCCCee-eeEeccC--cccEEEEEEeCCCCcEEEEEc--CCCc--EEEEECCCCc--------eeeEEe
Q 009059 327 ---RTVRVWDTENPDYS-LRTFTGH--STTVMSLDFHPSKEDLLCSCD--NNSE--IRYWSINNGS--------CAGVFK 388 (545)
Q Consensus 327 ---g~I~vwd~~~~~~~-~~~~~~h--~~~V~~l~~~p~~~~ll~s~s--~dg~--I~lwd~~~~~--------~~~~~~ 388 (545)
..|..|.+.+.... ...+... ...+..+..+.++..+++... .+.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25778888765432 2333332 234667778889888775543 2333 4444543221 111121
Q ss_pred ccCCeeEEEEeCCCCEEEEEEC----CCeEEEEECCCCEE---EEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEE
Q 009059 389 CQSGATQMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRV 457 (545)
Q Consensus 389 ~~~~v~~l~~sp~~~~l~~~~~----dg~I~i~d~~~~~~---~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~v 457 (545)
........... .+..++.-+. ++.|...++..... ...+..+...+..-.+...+.+|+... ++ .|++
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred ccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 11112222222 3344544443 45777777765321 223333455555444444455565554 55 7899
Q ss_pred EEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcC----CeEEEEeCCCCeE
Q 009059 458 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKT 510 (545)
Q Consensus 458 wd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~ 510 (545)
+++.++. .........+.+..+...++...+...-.+ .+++-||+.+++.
T Consensus 364 ~~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 364 HDLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 9998763 233333334555555555666555444333 4899999987753
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.0098 Score=53.98 Aligned_cols=216 Identities=8% Similarity=0.024 Sum_probs=136.8
Q ss_pred EEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCce---eeE-Ee-ccCCe
Q 009059 319 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGV-FK-CQSGA 393 (545)
Q Consensus 319 ~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~---~~~-~~-~~~~v 393 (545)
+|+.+. ...|+..++..... ..+......+.+++|++..+.++.+-...+.|+..++..... ... +. ....+
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 344443 33588889986553 333335567889999998877877766677788777754221 111 21 12346
Q ss_pred eEEEEeCCCCEEEEEEC-CCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCcceE
Q 009059 394 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 469 (545)
Q Consensus 394 ~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s---dg~I~vwd~~~~~~~~~i 469 (545)
..+++.+.++.|+.+.. .+.|.++++........+.........++++|...+|.... .+.|...++... ...
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~ 156 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 156 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence 78999987777777665 57899999987766555555667789999999766666554 335666666543 222
Q ss_pred EEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCeEEEe---ccCCCCeeEEEEeCCCCEEEEEe-CCCcEE
Q 009059 470 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL---SAHDKLVSSLAASTVNGMVASAS-HDKCVK 542 (545)
Q Consensus 470 ~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~~~---~~h~~~V~~l~~spd~~~las~s-~Dg~I~ 542 (545)
......-.....+++.+.+..|+.+.. .+.|...++.+.....+ ........+|++. +.+|..+. .++.|.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEE
Confidence 222233456789999998887887755 46999999977654422 2223446677776 34444443 455554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.70 E-value=0.0051 Score=62.65 Aligned_cols=186 Identities=8% Similarity=0.075 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCC----ccE-------EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee
Q 009059 274 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHT----QWI-------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 341 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~----~~V-------~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~ 341 (545)
+|.++++.+.++.|.-.|. ++|+.+.++.... ..+ ..+++. +..|+.++.||.+.-.|.++++...
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 4544443334678888887 4688887764110 000 123443 3467788899999999999988633
Q ss_pred eEecc--Cc-ccEEE-EEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCC-------------------
Q 009059 342 RTFTG--HS-TTVMS-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG------------------- 392 (545)
Q Consensus 342 ~~~~~--h~-~~V~~-l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~------------------- 392 (545)
..-.. +. ..++. -.+. + ..++ .+. .+|.|+-+|+++|+.+..+.....
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~-~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~ 216 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVA-K-DTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred cccccccccccceeecCeEe-C-CeEE-EeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCc
Confidence 32111 11 11111 1111 1 2333 333 367899999999999887653210
Q ss_pred --------------------eeEEEEeCCCCEEEEEEC----------------CCeEEEEECCCCEEEEEecCCCC---
Q 009059 393 --------------------ATQMRFQPRLGRILAAAI----------------ENYISILDVETQVCRLKLQGHKN--- 433 (545)
Q Consensus 393 --------------------v~~l~~sp~~~~l~~~~~----------------dg~I~i~d~~~~~~~~~~~~h~~--- 433 (545)
-....+.+..+.++.+.. ...+...|+++++.+..++....
T Consensus 217 ~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~W 296 (571)
T d2ad6a1 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred ccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccc
Confidence 123577777777776654 34688899999999887764322
Q ss_pred ------CEEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCC
Q 009059 434 ------QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 434 ------~I~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~ 464 (545)
......+..+++ .++... +|.+.++|..+++
T Consensus 297 d~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 111122222443 344555 8899999988874
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.65 E-value=0.0049 Score=58.90 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=123.2
Q ss_pred EEEEeC---CCCcEEEEEcCCCcEEEEECCCCceeeEEec--cCCeeEEEEe--CCCCEEEEEECCC-------------
Q 009059 353 SLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQ--PRLGRILAAAIEN------------- 412 (545)
Q Consensus 353 ~l~~~p---~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~--~~~v~~l~~s--p~~~~l~~~~~dg------------- 412 (545)
.+.+.. ||+++++.-..+..|.+.|+++.++...+.. ...+..+... |+-.++++.+.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455543 6788888888899999999999998776554 3456666664 4556676666522
Q ss_pred -----eEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CC---------------cE----------------
Q 009059 413 -----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---------------LV---------------- 455 (545)
Q Consensus 413 -----~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s-dg---------------~I---------------- 455 (545)
.+.++|..+.+....+.- ......+.++++|+++++.+ +. .+
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 367899999888776653 34567889999999998876 21 12
Q ss_pred -------EEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc-CCeEEEEeCCCCe-----------EE-Eecc
Q 009059 456 -------RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK-----------TL-TLSA 515 (545)
Q Consensus 456 -------~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~-----------~~-~~~~ 515 (545)
.+.|.+.......+..+. -....+.+.++|||+++++++. +.++.|+|++.-. .+ ....
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 333333211111222222 2234567899999999988876 4599999985311 11 1122
Q ss_pred CCCCeeEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 516 HDKLVSSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 516 h~~~V~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
..-....-+|...|....|---|..|--|+
T Consensus 327 lglgPLht~fd~~g~aytslfids~v~kw~ 356 (459)
T d1fwxa2 327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN 356 (459)
T ss_dssp CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred cCcCccccccCCCceEEEEeeccceEEEEe
Confidence 334456678888775555555788888775
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.63 E-value=0.022 Score=51.56 Aligned_cols=224 Identities=13% Similarity=0.194 Sum_probs=144.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccC
Q 009059 268 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 347 (545)
Q Consensus 268 ~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h 347 (545)
+.-.+|..+.||.-+ ..++.+||+++.+.+..+.-. ..|.--.|-.+ +.|+..+ +..|.-|+++....+.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence 345678888888766 568999999998888777644 45666677644 4555553 5579999997666667777766
Q ss_pred c----ccEEEEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccCCeeEE-EEe----CCCCEEEEEE---
Q 009059 348 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQ----PRLGRILAAA--- 409 (545)
Q Consensus 348 ~----~~V~~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~~v~~l-~~s----p~~~~l~~~~--- 409 (545)
. ..|.....+++.+.++++|= -.|.+.+|..+.+.. ..++. .+.+. .+. +....+++-.
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 219 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 219 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccc--eeeeeEEEEcCCCCCCceEEEEEECC
Confidence 5 45777788888888876651 236788998875432 22221 11111 111 1111222222
Q ss_pred -CCCeEEEEECCCCE--------EEEEe-c---CCCCCEEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCcceEEEEeeC
Q 009059 410 -IENYISILDVETQV--------CRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 475 (545)
Q Consensus 410 -~dg~I~i~d~~~~~--------~~~~~-~---~h~~~I~~l~~sp~g~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~ 475 (545)
..+.++|.++.... ....+ - ...+...++..++.-.++...+ -|.|.+||+.++ .++..-+..
T Consensus 220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs 296 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 296 (327)
T ss_dssp TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecC
Confidence 23688999886421 11111 1 1245667888888777777777 899999999998 777777777
Q ss_pred CCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 476 GNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 476 ~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
...|...+-+.+..-+++...+|.|.
T Consensus 297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 297 GETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred CCceEEeccCCCCceEEEECCCCeEE
Confidence 77777666666655577777777554
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.57 E-value=0.0038 Score=63.50 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=151.3
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEeccCCc----------cE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEec
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~h~~----------~V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~ 345 (545)
.|+.++.++.|.-.|.++|+.+..+..... .+ ..++. .+..++.+..|+.|.-.|..+++. +..+.
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~-~w~~~ 144 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA-IWSQQ 144 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE-EEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcE-EeccC
Confidence 556667788999999999999987632110 00 11111 144688888999999999998876 33332
Q ss_pred cCc-ccEEEEEEeC--CCCcEEEEEc------CCCcEEEEECCCCceeeEEeccC-------------------------
Q 009059 346 GHS-TTVMSLDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS------------------------- 391 (545)
Q Consensus 346 ~h~-~~V~~l~~~p--~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~------------------------- 391 (545)
... .....+.-.| .+..++ .+. ..|.|+-+|.++++.+..+....
T Consensus 145 ~~~~~~~~~~~~~p~v~~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKGKVI-IGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp CSCTTSSCBCCSCCEEETTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCcccceeeeeeeeeecCccc-ccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 111 1100010001 012223 332 23679999999999998775311
Q ss_pred -------CeeEEEEeCCCCEEEEEEC-------------------CCeEEEEECCCCEEEEEecCCCCC---------EE
Q 009059 392 -------GATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKNQ---------VH 436 (545)
Q Consensus 392 -------~v~~l~~sp~~~~l~~~~~-------------------dg~I~i~d~~~~~~~~~~~~h~~~---------I~ 436 (545)
.-..+.+.+..+.++.+.. ...|.-.|+++++.+..++..... ..
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 0123677788777766542 235888899999988776542221 11
Q ss_pred EEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCcceEEEEeeCC------------------------------------
Q 009059 437 SVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG------------------------------------ 476 (545)
Q Consensus 437 ~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~~~~~i~~~~~~~------------------------------------ 476 (545)
-+....++ ..++.+. +|.+.++|..+++ .+.......
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~---~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg 380 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCc---ccccccccccccccccChhhccccccccccccccceeeeeccccc
Confidence 12222233 2444555 8899999998874 332211100
Q ss_pred CceEEEEEcCCCCEEEEEEc------------------------------------CCeEEEEeCCCCeEEEeccCCCCe
Q 009059 477 NKFHSCVFHPTFPSLLVIGC------------------------------------YETLELWNMTENKTLTLSAHDKLV 520 (545)
Q Consensus 477 ~~v~~~~~sp~~~~l~~~~~------------------------------------dg~I~iwd~~~~~~~~~~~h~~~V 520 (545)
..-...+++|+...+++... .|.|.-||+.+++.+-......+.
T Consensus 381 ~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~ 460 (560)
T d1kv9a2 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW 460 (560)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred cccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCC
Confidence 00113456777766665442 246788999999988222222222
Q ss_pred eEEEEeCCCCEEEEEeCCCcEEEcC
Q 009059 521 SSLAASTVNGMVASASHDKCVKIWK 545 (545)
Q Consensus 521 ~~l~~spd~~~las~s~Dg~I~iWd 545 (545)
.+-.++-.+.+++.|+.||.++-+|
T Consensus 461 ~gg~l~TagglVF~G~~dg~l~A~D 485 (560)
T d1kv9a2 461 NGGTLSTAGNLVFQGTAAGQMHAYS 485 (560)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCceeEECCCEEEEECCCCcEEEEE
Confidence 2223344577888899999998765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.56 E-value=0.0095 Score=60.57 Aligned_cols=150 Identities=9% Similarity=0.025 Sum_probs=87.6
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCC----ccEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCCeeeeEec
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~----~~V~~l~~sp~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~ 345 (545)
..|+.++.|+.+.-.|.++++.+....... ..++.--.-.++ .++.+. .+|.|+-+|+.+++...+...
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 467778889999999999999876553211 111111011133 444443 378899999999886433221
Q ss_pred cC------------------------------------cccE-EEEEEeCCCCcEEEEEcC----------------CCc
Q 009059 346 GH------------------------------------STTV-MSLDFHPSKEDLLCSCDN----------------NSE 372 (545)
Q Consensus 346 ~h------------------------------------~~~V-~~l~~~p~~~~ll~s~s~----------------dg~ 372 (545)
.. ...+ ...++.+....++ .+.. ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y-~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY-YGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeee-eecccccCccccccccccccccc
Confidence 10 1112 1245556544333 3322 245
Q ss_pred EEEEECCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
+...|+++++.+..+.... ......+..+++ .++..+.+|.++++|.++++.+..
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 7788999999888776321 122222333433 345677799999999999987753
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.50 E-value=0.03 Score=57.02 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=111.3
Q ss_pred CCCEEEEEeCCCcEEEEEc-CCCeEEEEeccCC----c------cE-EEEEEcCC----CCEEEEEeCCCeEEEEECCCC
Q 009059 274 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHT----Q------WI-TDVRFSPS----LSRLATSSADRTVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~-~~~~~~~~l~~h~----~------~V-~~l~~sp~----~~~l~t~s~dg~I~vwd~~~~ 337 (545)
+|.++++.+.++.|...|. ++|+.+..+.... . .+ ..+++.++ ..+|+.++.|+.|.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4544444444577777776 5788887653110 0 01 23455432 347888999999999999998
Q ss_pred CeeeeEeccCcc---cEE-EEEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccC----------------
Q 009059 338 DYSLRTFTGHST---TVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS---------------- 391 (545)
Q Consensus 338 ~~~~~~~~~h~~---~V~-~l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~---------------- 391 (545)
+.+...-..... .++ .-.+. +.. ++.+. ..|.|+-+|+++|+.+..+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~--~~~-vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~ 218 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ceeccccccccccccccccCCcEE--CCe-EEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence 864333221110 111 11122 123 33443 24889999999999998765211
Q ss_pred -----------------------CeeEEEEeCCCCEEEEEECC----------------CeEEEEECCCCEEEEEecC--
Q 009059 392 -----------------------GATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG-- 430 (545)
Q Consensus 392 -----------------------~v~~l~~sp~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~-- 430 (545)
.-..+.+.+..+.++.+..+ ..|...|+++++.+..++.
T Consensus 219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~ 298 (596)
T d1w6sa_ 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (596)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence 01245677777777776543 3488899999999887754
Q ss_pred CCC-------CEEEEE-EcCCCC---EEEEEe-CCcEEEEEcCCCC
Q 009059 431 HKN-------QVHSVC-WNTSGE---YLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 431 h~~-------~I~~l~-~sp~g~---~l~s~s-dg~I~vwd~~~~~ 464 (545)
|.. .+..+. ...+|+ .++... +|.+.++|..+++
T Consensus 299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 221 122222 123443 555566 8899999988874
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.42 E-value=0.027 Score=57.13 Aligned_cols=185 Identities=12% Similarity=0.066 Sum_probs=108.4
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCC----------ccE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 342 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~----------~~V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~ 342 (545)
+| .|++++.++.|.-+|.++|+.+..+.... ..+ ..+.+. ...++.++.|+.+.-.|..+++....
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence 44 56667778899999999999998764211 011 112222 33677778899999999998876333
Q ss_pred Eecc-Cc-ccEE--E-EEEeCCCCcEEEEEc------CCCcEEEEECCCCceeeEEeccC--------------------
Q 009059 343 TFTG-HS-TTVM--S-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-------------------- 391 (545)
Q Consensus 343 ~~~~-h~-~~V~--~-l~~~p~~~~ll~s~s------~dg~I~lwd~~~~~~~~~~~~~~-------------------- 391 (545)
.-.. +. ..+. . ..+. +..++ .+. ..|.|+.+|.++|+.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~ 230 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVF--KGKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred ccCccCCcceEEeecceEEE--eccEE-EeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccC
Confidence 2211 11 1111 0 0111 12333 432 24689999999999988764211
Q ss_pred ------------Ce-eEEEEeCCCCEEEEEEC-------------------CCeEEEEECCCCEEEEEecCCCC------
Q 009059 392 ------------GA-TQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKN------ 433 (545)
Q Consensus 392 ------------~v-~~l~~sp~~~~l~~~~~-------------------dg~I~i~d~~~~~~~~~~~~h~~------ 433 (545)
.+ ....+.++.+.++.... ...|...|+++++.+..++....
T Consensus 231 ~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d 310 (573)
T d1kb0a2 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (573)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccc
Confidence 01 23567777777665442 12578889999988776654211
Q ss_pred ---CEEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCC
Q 009059 434 ---QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 434 ---~I~~l~~sp~g---~~l~s~s-dg~I~vwd~~~~~ 464 (545)
.........++ .+++.+. +|.+.++|..+++
T Consensus 311 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe 348 (573)
T d1kb0a2 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (573)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred ccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence 12222222233 3445555 8899999998884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.25 E-value=0.056 Score=54.45 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=140.6
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCcc-EEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeeeEec
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~-V~~l~~sp--~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~ 345 (545)
+..++.+..++.|.-.|..+++.+.....+... -..+.-.| ....++.+. ..|.|.-+|.++++..-+...
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 346777888999999999999988766432110 00111111 122344432 246799999999886443322
Q ss_pred cC-----------------------------cccEE-EEEEeCCCCcEEEEEcC------------------CCcEEEEE
Q 009059 346 GH-----------------------------STTVM-SLDFHPSKEDLLCSCDN------------------NSEIRYWS 377 (545)
Q Consensus 346 ~h-----------------------------~~~V~-~l~~~p~~~~ll~s~s~------------------dg~I~lwd 377 (545)
.. ...++ .+.+.+....+++..+. ...|...|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 10 11121 24555654444332210 23577789
Q ss_pred CCCCceeeEEeccC----------CeeEEEEeCCCC---EEEEEECCCeEEEEECCCCEEEEEecCCC-CC---------
Q 009059 378 INNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ--------- 434 (545)
Q Consensus 378 ~~~~~~~~~~~~~~----------~v~~l~~sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~--------- 434 (545)
+++++.+..+.... ...-+.+..+++ .++.+..+|.++++|..+++.+.....-. ..
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~ 356 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence 99999887665321 112222333332 35556778999999999998876442110 00
Q ss_pred --------------------------EEEEEEcCCCCEEEEEe-C-----------------------------------
Q 009059 435 --------------------------VHSVCWNTSGEYLASVS-D----------------------------------- 452 (545)
Q Consensus 435 --------------------------I~~l~~sp~g~~l~s~s-d----------------------------------- 452 (545)
-...+++|+..+++... +
T Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (560)
T d1kv9a2 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (560)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence 01345566666555433 2
Q ss_pred -CcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCC-CCeeEEEEeCCC
Q 009059 453 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVN 529 (545)
Q Consensus 453 -g~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spd~ 529 (545)
|.|.-||+.++ +.+-..... .....-.+.-.+..+++++.|+.++.||.++++.+ .+.-.. ..-.-+.+..+|
T Consensus 437 ~G~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG 512 (560)
T d1kv9a2 437 SGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (560)
T ss_dssp EEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ccceEEEeCCCC---eEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 24566677666 333332211 11111223334567888999999999999999999 433111 111114455677
Q ss_pred C-EEEEEe
Q 009059 530 G-MVASAS 536 (545)
Q Consensus 530 ~-~las~s 536 (545)
+ ||++..
T Consensus 513 kqyv~v~a 520 (560)
T d1kv9a2 513 RQYVAIMA 520 (560)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 555443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.24 E-value=0.014 Score=55.69 Aligned_cols=253 Identities=9% Similarity=0.028 Sum_probs=127.3
Q ss_pred eeeeecCCceeeEEEEeecCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCeEEEEecc-CCccEEEEEEcCCCCE
Q 009059 242 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSR 319 (545)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~spdg~~latg~~d-g~I~lwd~~~~~~~~~l~~-h~~~V~~l~~sp~~~~ 319 (545)
..+||..++.-.........|.......++.++|++++.|+.+ ..+.+||..+..-...-.. ....-..++..+|+++
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v 133 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV 133 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence 4566666553211112223344444567889999999998765 6899999887554322111 1112235667789999
Q ss_pred EEEEeCC------CeEEEEECCCCCeeeeEe--------ccCcc-----cEEEEEEeCCCCcEEEEEcCCCcEEEEECCC
Q 009059 320 LATSSAD------RTVRVWDTENPDYSLRTF--------TGHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 380 (545)
Q Consensus 320 l~t~s~d------g~I~vwd~~~~~~~~~~~--------~~h~~-----~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~ 380 (545)
++.++.+ ..+.+||..+.......- ..+.. .-..+...+++ .++..+...+.+.+++..+
T Consensus 134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTT
T ss_pred eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCccc
Confidence 9988753 368999998765321100 00000 00111112333 3444566666777777776
Q ss_pred CceeeEEecc-------C--CeeEEEEeC-CCCEEEEEECC--------CeEEEEECCC---CEEEEE-ecC--CCCCEE
Q 009059 381 GSCAGVFKCQ-------S--GATQMRFQP-RLGRILAAAIE--------NYISILDVET---QVCRLK-LQG--HKNQVH 436 (545)
Q Consensus 381 ~~~~~~~~~~-------~--~v~~l~~sp-~~~~l~~~~~d--------g~I~i~d~~~---~~~~~~-~~~--h~~~I~ 436 (545)
.......... . .-..+.+.. +++.+++++.. ....++++.. ...... ... +...-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 292 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH 292 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence 6543322110 0 112333333 44445555432 1234444332 111111 111 112223
Q ss_pred EEEEcCCCCEEEEEe-CC-----------cEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEEc
Q 009059 437 SVCWNTSGEYLASVS-DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 496 (545)
Q Consensus 437 ~l~~sp~g~~l~s~s-dg-----------~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~ 496 (545)
+....++|++++.|+ +. .+.+||..+.. ...+..+......-....+.+|++.++.|+.
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 555668999888876 21 47889987641 1111111111111123456799998888874
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.24 E-value=0.061 Score=54.59 Aligned_cols=152 Identities=9% Similarity=0.019 Sum_probs=89.3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEeccCCc-cEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCCeeeeEec
Q 009059 275 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT 345 (545)
Q Consensus 275 g~~latg~~dg~I~lwd~~~~~~~~~l~~h~~-~V~~l~~sp--~~~~l~t~s~------dg~I~vwd~~~~~~~~~~~~ 345 (545)
+.+|+.++.|+.|.-.|.++++++..+..... .-..+.-.| -+..++.+.. .|.|+-+|+.+++...+...
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 34688888899999999999999877642110 000011111 1334555532 48999999999987433221
Q ss_pred cC------------------------------------cccE-EEEEEeCCCCcEEEEEcC----------------CCc
Q 009059 346 GH------------------------------------STTV-MSLDFHPSKEDLLCSCDN----------------NSE 372 (545)
Q Consensus 346 ~h------------------------------------~~~V-~~l~~~p~~~~ll~s~s~----------------dg~ 372 (545)
.. ...+ ..+.+.+..+.++ .+.. ...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy-~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee-ccccccccccccccccccccccc
Confidence 10 0111 2344556544333 3321 235
Q ss_pred EEEEECCCCceeeEEeccC----------CeeEEEE-eCCCC---EEEEEECCCeEEEEECCCCEEEEE
Q 009059 373 IRYWSINNGSCAGVFKCQS----------GATQMRF-QPRLG---RILAAAIENYISILDVETQVCRLK 427 (545)
Q Consensus 373 I~lwd~~~~~~~~~~~~~~----------~v~~l~~-sp~~~---~l~~~~~dg~I~i~d~~~~~~~~~ 427 (545)
|...|+++++.+..+.... ....+.. ..++. .++....+|.++++|..+++.+..
T Consensus 280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence 7788999999988776321 1222222 22332 356677789999999999987754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.22 E-value=0.029 Score=52.66 Aligned_cols=187 Identities=15% Similarity=0.208 Sum_probs=119.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcC------CCCEEEEEeC-C---CeEEEEECCCCCeeeeE
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP------SLSRLATSSA-D---RTVRVWDTENPDYSLRT 343 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp------~~~~l~t~s~-d---g~I~vwd~~~~~~~~~~ 343 (545)
+..+++....++-|++||+. |+.+..+. .+.+..|.... ...-|+.++. + .+|.+|.+......+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44566666677779999985 77777664 34555554432 2223455542 2 36888887643332333
Q ss_pred eccC-------cccEEEEEE--eCC-CCcEEEEEcCCCcEEEEECC---CC----ceeeEEeccCCeeEEEEeCCCCEEE
Q 009059 344 FTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 344 ~~~h-------~~~V~~l~~--~p~-~~~ll~s~s~dg~I~lwd~~---~~----~~~~~~~~~~~v~~l~~sp~~~~l~ 406 (545)
+... ...++.+|+ ++. +...++....+|.+..|.+. .+ +.++.+.....+..+.+....+.|+
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence 3221 224677777 554 44456677788999888763 22 4566777888899999999999999
Q ss_pred EEECCCeEEEEECCC-----CEEEEEecC--CCCCEEEEEEcC--CCC-EEEEEe--CCcEEEEEcCCC
Q 009059 407 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SGE-YLASVS--DELVRVWSIGSG 463 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~I~~l~~sp--~g~-~l~s~s--dg~I~vwd~~~~ 463 (545)
++-.+..|..++++- +..+....+ ....+-.|+.-. ++. ||++.+ +++..|||....
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999988888887652 233333322 356777777543 333 666665 779999998764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.15 E-value=0.12 Score=49.82 Aligned_cols=224 Identities=8% Similarity=0.007 Sum_probs=123.1
Q ss_pred CCccEEEEEEcCCCCEEEEEe-CC----CeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcC---------
Q 009059 304 HTQWITDVRFSPSLSRLATSS-AD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------- 369 (545)
Q Consensus 304 h~~~V~~l~~sp~~~~l~t~s-~d----g~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~--------- 369 (545)
+.-.+..++++|++++++.+- .+ ..|+++|+.+++..-..+.. .....++|.+++..++++.-.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence 333455678899999888542 23 37999999998753333321 123568899998888876532
Q ss_pred ------CCcEEEEECCCCcee--eEEeccC---CeeEEEEeCCCCEEEEEEC---CC--eEEEEECCCCE--------EE
Q 009059 370 ------NSEIRYWSINNGSCA--GVFKCQS---GATQMRFQPRLGRILAAAI---EN--YISILDVETQV--------CR 425 (545)
Q Consensus 370 ------dg~I~lwd~~~~~~~--~~~~~~~---~v~~l~~sp~~~~l~~~~~---dg--~I~i~d~~~~~--------~~ 425 (545)
...|+++.+.+.... ..+.... -...+..+.++.+++.... .. .+.+.|+.... ..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 125888888765432 2333222 2456778888888775443 22 35555654321 12
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE-cCC--
Q 009059 426 LKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE-- 498 (545)
Q Consensus 426 ~~~~~h~~~I~~l~~sp~g~~l~s~s----dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg-- 498 (545)
..+......+.-+.. .++.+++... ++.|...++...........+..+...+..-.+...+.+|+... .++
T Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 222322333333332 2333444433 34677777766543222223333444455445555555666555 444
Q ss_pred eEEEEeCCCCeEEEec-cCCCCeeEEEEeCCCC
Q 009059 499 TLELWNMTENKTLTLS-AHDKLVSSLAASTVNG 530 (545)
Q Consensus 499 ~I~iwd~~~~~~~~~~-~h~~~V~~l~~spd~~ 530 (545)
.|+++++.+++...+. .-.+.|..+...++..
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence 7899999988776432 2334455554444444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.10 E-value=0.088 Score=53.23 Aligned_cols=186 Identities=9% Similarity=-0.013 Sum_probs=106.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEeccCC--------ccE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEecc
Q 009059 276 KLLATGGHDKKAVLWCTESFTVKSTLEEHT--------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 276 ~~latg~~dg~I~lwd~~~~~~~~~l~~h~--------~~V-~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
..|.+++.++.|.-.|..+|+.+.++.... ..+ ..+++. +..++.++.|+.+.-.|..+++........
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 366677788899999999999987763210 001 112232 346778889999999999988764332221
Q ss_pred CcccE-----EEEEEeC--CCCcEEEEE------cCCCcEEEEECCCCceeeEEeccCC---------------------
Q 009059 347 HSTTV-----MSLDFHP--SKEDLLCSC------DNNSEIRYWSINNGSCAGVFKCQSG--------------------- 392 (545)
Q Consensus 347 h~~~V-----~~l~~~p--~~~~ll~s~------s~dg~I~lwd~~~~~~~~~~~~~~~--------------------- 392 (545)
..... .-+.+.+ ....+++.+ ...+.|.-+|.++++.+..+.....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 11000 0011111 122333332 2346788999999988876542110
Q ss_pred ---------------------eeEEEEeCCCCEEEEEEC------------------------CCeEEEEECCCCEEEEE
Q 009059 393 ---------------------ATQMRFQPRLGRILAAAI------------------------ENYISILDVETQVCRLK 427 (545)
Q Consensus 393 ---------------------v~~l~~sp~~~~l~~~~~------------------------dg~I~i~d~~~~~~~~~ 427 (545)
-..+++.+..+.++.+.. ...|...|+++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 123678888787777652 23578889999988877
Q ss_pred ecC--CCC--------CE-EEEEEcCCCC---EEEEEe-CCcEEEEEcCCCC
Q 009059 428 LQG--HKN--------QV-HSVCWNTSGE---YLASVS-DELVRVWSIGSGS 464 (545)
Q Consensus 428 ~~~--h~~--------~I-~~l~~sp~g~---~l~s~s-dg~I~vwd~~~~~ 464 (545)
++. |.- ++ ..+.. .+++ .++... ++.+.++|..+++
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~-~~g~~~~~v~~~~k~g~~~vldr~tG~ 357 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKA-KDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEEC-SSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccccccccccccccccc-ccccccceeEeecccccEEeecccCCc
Confidence 654 321 11 11222 2332 333444 7788888887763
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.89 E-value=0.2 Score=50.37 Aligned_cols=153 Identities=11% Similarity=0.066 Sum_probs=83.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEecc--CCccEEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCCeeeeEecc
Q 009059 277 LLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 277 ~latg~~dg~I~lwd~~~~~~~~~l~~--h~~~V~~l~~sp--~~~~l~t~s------~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
.++.++.|+.+.-.|.++|+.+..... +...-..+.-.| -+..+++++ ..|.|+.+|..+++...+....
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 209 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeec
Confidence 566677889998889999988865432 111100011111 123444443 2478999999998864332211
Q ss_pred C------------------------------cccEE-EEEEeCCCCcEEEEEc------------------CCCcEEEEE
Q 009059 347 H------------------------------STTVM-SLDFHPSKEDLLCSCD------------------NNSEIRYWS 377 (545)
Q Consensus 347 h------------------------------~~~V~-~l~~~p~~~~ll~s~s------------------~dg~I~lwd 377 (545)
. ...++ ...+.++...+++..+ ....|...|
T Consensus 210 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld 289 (573)
T d1kb0a2 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD 289 (573)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEec
Confidence 0 01121 2445555433332111 112466778
Q ss_pred CCCCceeeEEeccC----------CeeEEEEeCCC---CEEEEEECCCeEEEEECCCCEEEEEec
Q 009059 378 INNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQ 429 (545)
Q Consensus 378 ~~~~~~~~~~~~~~----------~v~~l~~sp~~---~~l~~~~~dg~I~i~d~~~~~~~~~~~ 429 (545)
+++++....+.... .........++ ..++.+..+|.++++|..+++.+....
T Consensus 290 ~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~ 354 (573)
T d1kb0a2 290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (573)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred ccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence 88888776665321 12222222232 245566678999999999998876543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.65 E-value=0.26 Score=45.77 Aligned_cols=182 Identities=9% Similarity=0.097 Sum_probs=101.9
Q ss_pred EEEEcCCCCEEEEEe------------CCCeEEEEECCCCCeeeeEec--cC-----cccEEEEEE--eCCCCcEEEEE-
Q 009059 310 DVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFT--GH-----STTVMSLDF--HPSKEDLLCSC- 367 (545)
Q Consensus 310 ~l~~sp~~~~l~t~s------------~dg~I~vwd~~~~~~~~~~~~--~h-----~~~V~~l~~--~p~~~~ll~s~- 367 (545)
+|+..|+|..+++++ ..|.|.++|+.+.......+. +. .-....+.+ .+++...|++.
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn 118 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 118 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence 455666665555443 248899999876543333222 11 112344443 34555555454
Q ss_pred --cCCCcEEEEECCCCc--eee--EEecc--CCeeEEEEeCCCCEEEEEEC-----------------CCeEEEEECCCC
Q 009059 368 --DNNSEIRYWSINNGS--CAG--VFKCQ--SGATQMRFQPRLGRILAAAI-----------------ENYISILDVETQ 422 (545)
Q Consensus 368 --s~dg~I~lwd~~~~~--~~~--~~~~~--~~v~~l~~sp~~~~l~~~~~-----------------dg~I~i~d~~~~ 422 (545)
....+|-+|++.... ... .+... ...+.+.+..++..+++-.. -+.|..||...
T Consensus 119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~- 197 (340)
T d1v04a_ 119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND- 197 (340)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC-
T ss_pred ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc-
Confidence 235578888775432 221 22221 23688888888766665211 12344444433
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCcceEEEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg~I~vwd~~~~~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
...... .-...+.|+++|++++|+++. .+.|++|++...........+. -....-.+.+.+.+..+++++
T Consensus 198 -~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 198 -VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp -EEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred -eEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence 322222 235689999999999888887 7799999997654333333332 455567788876444455554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.01 E-value=0.5 Score=43.83 Aligned_cols=182 Identities=12% Similarity=0.176 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCcEEEEECCCCceeeEEeccCCeeEEEEe------CCCCEEEEEEC--C--CeEEEEECCC-CEEEEEec
Q 009059 361 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ------PRLGRILAAAI--E--NYISILDVET-QVCRLKLQ 429 (545)
Q Consensus 361 ~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~~v~~l~~s------p~~~~l~~~~~--d--g~I~i~d~~~-~~~~~~~~ 429 (545)
..+++.....+-|++||+. |+.+..+.. +.+..+..- .....+++++. + ..|.+|.+.. ...+..+.
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 3566666777779999996 776666542 445544433 12223445552 2 3577776642 22233332
Q ss_pred CC-------CCCEEEEEE--cCC-CCE-EEEEe-CCcEEEEEcCCCCC----cceEEEEeeCCCceEEEEEcCCCCEEEE
Q 009059 430 GH-------KNQVHSVCW--NTS-GEY-LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV 493 (545)
Q Consensus 430 ~h-------~~~I~~l~~--sp~-g~~-l~s~s-dg~I~vwd~~~~~~----~~~i~~~~~~~~~v~~~~~sp~~~~l~~ 493 (545)
.. ...+..+|+ ++. |.+ +++.. +|.+..|.+..... ...+..+. ....+..|++......|++
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence 21 124667776 554 554 44444 78888887743322 23344443 4568999999999999999
Q ss_pred EEcCCeEEEEeCCC-----CeEE-Eec--cCCCCeeEEEEeC--CCC-EEEEEe-CCCcEEEcC
Q 009059 494 IGCYETLELWNMTE-----NKTL-TLS--AHDKLVSSLAAST--VNG-MVASAS-HDKCVKIWK 545 (545)
Q Consensus 494 ~~~dg~I~iwd~~~-----~~~~-~~~--~h~~~V~~l~~sp--d~~-~las~s-~Dg~I~iWd 545 (545)
+-.+..|+.++.+- ...+ ... ...+.+..|++-. ++. ||++.+ .|++..|||
T Consensus 197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd 260 (353)
T d1h6la_ 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE 260 (353)
T ss_dssp EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence 99988888777642 2222 221 2356777787643 333 555444 567777764
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.70 E-value=0.078 Score=53.62 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=58.9
Q ss_pred CCcEEEEECCCCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCC-EEEEEEcCCCC-EE
Q 009059 370 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGE-YL 447 (545)
Q Consensus 370 dg~I~lwd~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-I~~l~~sp~g~-~l 447 (545)
.|.|.-+|+.+++.+..+....++..-.+.-.++.+++++.||.++.||.++|+.+.++.-.... -.-+.|..+|+ ||
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv 544 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 46799999999999988887666554444566788899999999999999999999887642211 11144556774 55
Q ss_pred EEE
Q 009059 448 ASV 450 (545)
Q Consensus 448 ~s~ 450 (545)
++.
T Consensus 545 ~i~ 547 (582)
T d1flga_ 545 GVT 547 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.32 Score=45.77 Aligned_cols=173 Identities=15% Similarity=0.128 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcC-------------CCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 009059 266 VESCHFSPDGKLLATGGHDKKAVLWCTE-------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 332 (545)
Q Consensus 266 V~~l~~spdg~~latg~~dg~I~lwd~~-------------~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vw 332 (545)
..-+++++...+|+.|+.++ ++|..+. ..+....+ ..|..++|+.+ .|+.. .++.+..+
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYSL 110 (381)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence 55688888777888888764 6666532 11112222 35889999755 55554 45568888
Q ss_pred ECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeE------EeccCCeeEEEEeCCCCEEE
Q 009059 333 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRIL 406 (545)
Q Consensus 333 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~------~~~~~~v~~l~~sp~~~~l~ 406 (545)
+...-.. .........++..+.++|. .++....++.+.++++..+..... +.....+.+++|++.+..++
T Consensus 111 ~~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 111 DLEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp ESSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred Eeecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence 8775432 3333334567888888875 234566689999999988764332 12235566677776666665
Q ss_pred EEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE
Q 009059 407 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 450 (545)
Q Consensus 407 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~ 450 (545)
++..++.-.--++.....+.........|.+|.|..+..++++-
T Consensus 187 ~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 187 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 55322111111111100000001134468899998777777654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.32 Score=43.37 Aligned_cols=216 Identities=7% Similarity=-0.043 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCeEEE--EeccCCccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCCeeeeEeccC-cccEE
Q 009059 285 KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGH-STTVM 352 (545)
Q Consensus 285 g~I~lwd~~~~~~~~--~l~~h~~~V~~l~~sp~~~~l~t~s~---------dg~I~vwd~~~~~~~~~~~~~h-~~~V~ 352 (545)
..|.+||.++.+-.. .+......-..+.+ ++++++.|+. -..+.+||..+.......-... .....
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 357899988864322 23222222122222 4556666553 1356778877654321110001 11111
Q ss_pred EEEEeCCCCcEEEEEcCCCc-----EEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEECC-----CeEEEEECC
Q 009059 353 SLDFHPSKEDLLCSCDNNSE-----IRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVE 420 (545)
Q Consensus 353 ~l~~~p~~~~ll~s~s~dg~-----I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~d-----g~I~i~d~~ 420 (545)
++.+ + ..+++.++.++. +..+|..+............ -..+... .+..++.++.+ ..+..||..
T Consensus 97 ~~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 97 VGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecc
Confidence 2222 2 345545543333 44466665543322111111 1222223 32444455442 468889988
Q ss_pred CCEEEEEecC-CCCCEEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCcceEEEEee-CCCce-EEEEEcCCCCEE
Q 009059 421 TQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSC-TGNKF-HSCVFHPTFPSL 491 (545)
Q Consensus 421 ~~~~~~~~~~-h~~~I~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~~~~~~i~~~~~-~~~~v-~~~~~sp~~~~l 491 (545)
+.+....-.. ......+++.. ++.+++.++ ++ .+.++|..+.. ...+.. ..... .+++. .+++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~r~~~~~~~-~~~~l~ 246 (288)
T d1zgka1 173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET----WTFVAPMKHRRSALGITV-HQGRIY 246 (288)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE----EEECCCCSSCCBSCEEEE-ETTEEE
T ss_pred ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee----eecccCccCcccceEEEE-ECCEEE
Confidence 7654432111 11111223332 345555544 32 56777776541 111111 11111 22232 356777
Q ss_pred EEEEcCC-----eEEEEeCCCCeEEE
Q 009059 492 LVIGCYE-----TLELWNMTENKTLT 512 (545)
Q Consensus 492 ~~~~~dg-----~I~iwd~~~~~~~~ 512 (545)
+.|+.++ .|.+||+.+++...
T Consensus 247 v~GG~~~~~~~~~v~~yd~~~~~W~~ 272 (288)
T d1zgka1 247 VLGGYDGHTFLDSVECYDPDTDTWSE 272 (288)
T ss_dssp EECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEecCCCCeecceEEEEECCCCEEEE
Confidence 7776554 58899999876553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.30 E-value=1.3 Score=37.35 Aligned_cols=212 Identities=11% Similarity=0.042 Sum_probs=112.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEE-cCCCCEEEEE------eCCCeEEEEECCCCCeeeeEecc
Q 009059 274 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATS------SADRTVRVWDTENPDYSLRTFTG 346 (545)
Q Consensus 274 dg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~-sp~~~~l~t~------s~dg~I~vwd~~~~~~~~~~~~~ 346 (545)
+.++|+++...|.+.++-+..++.+.--+. +|..... .+.-.++..+ -.-..|.+-++.......+.-..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtke---PI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNRE---PINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSS---CCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEecc---cccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 345788888899999998887776644332 2221111 0111111111 11223455555533332221111
Q ss_pred CcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceeeEEeccC----------CeeEEEE-eCCCCEEEEEEC-CCeE
Q 009059 347 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS----------GATQMRF-QPRLGRILAAAI-ENYI 414 (545)
Q Consensus 347 h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~~~~~~~----------~v~~l~~-sp~~~~l~~~~~-dg~I 414 (545)
..-.|.++++. ++.++++|+......+|-++.|+..+....+. .+..+.+ .++...++++.- .|.+
T Consensus 102 k~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 102 KPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp CSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred ceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence 11345666554 56788899888889999998887655443221 1222222 222222444444 5556
Q ss_pred EEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe--CC--cEEEEEcCCCCCcceEEEEe------eCCCceEEEEE
Q 009059 415 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELS------CTGNKFHSCVF 484 (545)
Q Consensus 415 ~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~s--dg--~I~vwd~~~~~~~~~i~~~~------~~~~~v~~~~~ 484 (545)
+|++... +.++.....+..+. +++. -+ ...-+|+++++. ...++. -....|.-+-+
T Consensus 180 ri~tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y 245 (313)
T d2hu7a1 180 RVFDSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGY 245 (313)
T ss_dssp EEECCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEE
T ss_pred EEecCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCce--eeeecCcccceeecceEEEeeee
Confidence 6655544 44555555555554 3332 12 222446665421 001111 12345666779
Q ss_pred cCCCCEEEEEEcCCeEEEEe
Q 009059 485 HPTFPSLLVIGCYETLELWN 504 (545)
Q Consensus 485 sp~~~~l~~~~~dg~I~iwd 504 (545)
.|+++.++++-.||.-.+|.
T Consensus 246 ~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 246 LPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp CTTSCEEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEecCCchheee
Confidence 99999889999999888886
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=2.6 Score=36.85 Aligned_cols=184 Identities=11% Similarity=0.044 Sum_probs=82.6
Q ss_pred CCCEEEEEeC---------CCcEEEEEcCCCeEEEEe--ccCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC
Q 009059 274 DGKLLATGGH---------DKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP 337 (545)
Q Consensus 274 dg~~latg~~---------dg~I~lwd~~~~~~~~~l--~~h~~~V~~l~~sp~~~~l~t~s~dg-----~I~vwd~~~~ 337 (545)
++++++.|+. -..+.+||..+.+-...- ......-.++.+ +++.++.++.++ .+..+|..+.
T Consensus 50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~ 127 (288)
T d1zgka1 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 127 (288)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccC
Confidence 4566666653 235678887765443221 111111122222 555565554433 3445666654
Q ss_pred CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCC-----CcEEEEECCCCceeeEEeccCC--eeEEEEeCCCCEEEEEEC
Q 009059 338 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI 410 (545)
Q Consensus 338 ~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~d-----g~I~lwd~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~~~~~ 410 (545)
.............-.++.... ..+++.|+.+ ..+..||..+.+....-..... ....... .+..++.++.
T Consensus 128 ~~~~~~~~~~~r~~~~~~~~~--~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~ 204 (288)
T d1zgka1 128 EWHLVAPMLTRRIGVGVAVLN--RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGY 204 (288)
T ss_dssp EEEECCCCSSCCBSCEEEEET--TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCB
T ss_pred ccccccccccccccceeeeee--ecceEecCcccccccceEEEeeccccccccccccccccccccccce-eeeEEEecCc
Confidence 331111111111111222222 3444455433 3577888876554322211111 1222222 3344555443
Q ss_pred C-----CeEEEEECCCCEEEEEecCCCCCE-EEEEEcCCCCEEEEEe-CC-----cEEEEEcCCC
Q 009059 411 E-----NYISILDVETQVCRLKLQGHKNQV-HSVCWNTSGEYLASVS-DE-----LVRVWSIGSG 463 (545)
Q Consensus 411 d-----g~I~i~d~~~~~~~~~~~~h~~~I-~~l~~sp~g~~l~s~s-dg-----~I~vwd~~~~ 463 (545)
+ ..+.+||..+.+....-....... .+++. -++++++.|+ ++ .|.+||+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 205 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred cccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 3 357888888765443221111111 12222 2577777765 33 4788888764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=4.6 Score=37.39 Aligned_cols=177 Identities=11% Similarity=0.053 Sum_probs=98.8
Q ss_pred cEEEEEEeCCCCcEEEEEcCCCcEEEEECC-----------CCceeeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEE
Q 009059 350 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 418 (545)
Q Consensus 350 ~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d 418 (545)
...-+++++... +++.|+.++ +++..+. .......... ..+..++|+.+ . ++...++.+..++
T Consensus 38 ~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i-p~v~~vafs~d--~-l~v~~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PDVIFVCFHGD--Q-VLVSTRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TTEEEEEEETT--E-EEEEESSEEEEEE
T ss_pred ccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC-CCeEEEEeeCC--E-EEEEeCCCEEEEE
Confidence 455677777644 555666554 6666532 1111122222 35888999765 3 4445667788888
Q ss_pred CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCcceE---EEEeeCCCceEEEEEcCCCCEEEEEE
Q 009059 419 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI---HELSCTGNKFHSCVFHPTFPSLLVIG 495 (545)
Q Consensus 419 ~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~~~~~~i---~~~~~~~~~v~~~~~sp~~~~l~~~~ 495 (545)
............-..++..+.+.|.. .++...++.+.++++..+...... ..+. -...+.+++|++.+..++++.
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEEEE
T ss_pred eeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEEeC
Confidence 87654444433345678889988753 444445889999999887432221 1111 235677888888887777764
Q ss_pred cCCeEEE-EeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 009059 496 CYETLEL-WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 535 (545)
Q Consensus 496 ~dg~I~i-wd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~ 535 (545)
.+. ..+ -++.....+ ........|.+|.|-.+..++++-
T Consensus 190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 332 211 111111111 001234467788887666666554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.85 E-value=8.4 Score=36.46 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=38.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeee-eEe------ccCcccEEEEEEeCC
Q 009059 306 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTF------TGHSTTVMSLDFHPS 359 (545)
Q Consensus 306 ~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~-~~~------~~h~~~V~~l~~~p~ 359 (545)
...++|+|.|++++|++--..|.|++++..++.... ..+ ..-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 457899999999988877557999999887665321 111 112356789999985
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.24 E-value=9 Score=34.70 Aligned_cols=184 Identities=14% Similarity=0.084 Sum_probs=104.5
Q ss_pred EEEEEcCCCCEEEEEeC------------CCcEEEEEcCCCeEE-EEe--ccC-----CccEEEEEE--cCCCC-EEEEE
Q 009059 267 ESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-STL--EEH-----TQWITDVRF--SPSLS-RLATS 323 (545)
Q Consensus 267 ~~l~~spdg~~latg~~------------dg~I~lwd~~~~~~~-~~l--~~h-----~~~V~~l~~--sp~~~-~l~t~ 323 (545)
-.++..|||..+++++. .|.|.++|+.+.+.. ..+ .+. .-....+.+ ..++. +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35777888877666542 388999998764322 111 111 112344443 44565 45554
Q ss_pred e---CCCeEEEEECCCCCeeee---Eec-cCcccEEEEEEeCCCCcEEEEEcC---------------CCcEEEEECCCC
Q 009059 324 S---ADRTVRVWDTENPDYSLR---TFT-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNG 381 (545)
Q Consensus 324 s---~dg~I~vwd~~~~~~~~~---~~~-~h~~~V~~l~~~p~~~~ll~s~s~---------------dg~I~lwd~~~~ 381 (545)
. ...+|.+|++......+. ++. ......+.+.+..++. ++++-.. -+...+|....+
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 3 356788888765443222 121 1224578888887764 5556310 122334444444
Q ss_pred ceeeEEeccCCeeEEEEeCCCCEEEEEEC-CCeEEEEECCCCE---EEEEecCCCCCEEEEEEcC-CCCEEEEEeC
Q 009059 382 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV---CRLKLQGHKNQVHSVCWNT-SGEYLASVSD 452 (545)
Q Consensus 382 ~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~I~i~d~~~~~---~~~~~~~h~~~I~~l~~sp-~g~~l~s~sd 452 (545)
+.......-...+.++++|+++.++++.. .+.|++|++.... ....+. -....-.+.+.+ +|.+.+++..
T Consensus 197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~~p 271 (340)
T d1v04a_ 197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 271 (340)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEECC
Confidence 44333444466899999999988877765 7899999987432 222222 345567788876 5566655543
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=86.83 E-value=9 Score=33.20 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=105.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCC-ce
Q 009059 305 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC 383 (545)
Q Consensus 305 ~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~-~~ 383 (545)
...|..|+--. .+.+... ||.|..|-...... +-.-......|..+..-. ...++. .|+.++.|..... ..
T Consensus 25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G~--~~~~al--~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGN--YHSLAL--KDGEVIAWGGNEDGQT 96 (273)
T ss_dssp SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEECS--SEEEEE--ETTEEEEEECCTTSTT
T ss_pred CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecCC--Cceeee--eeeeeeccCCCcceee
Confidence 45577777632 2333344 89999998765432 221122233455555422 233332 3899999976432 21
Q ss_pred eeEEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q 009059 384 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 463 (545)
Q Consensus 384 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~ 463 (545)
.........+..+..... .. +...|+.+..|.................|..++- ....++...++.++.|-....
T Consensus 97 ~~~~~~~~~~~~i~~~~~--~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 97 TVPAEARSGVDAIAAGAW--AS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF 171 (273)
T ss_dssp CCCGGGGSSCCEEEEETT--EE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred ccccccccceeEEeeecc--cc-cccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence 111112233444444332 22 2335888888865432111111112234554443 233444445888888876443
Q ss_pred CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeCCCCeEE-EeccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 464 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 464 ~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
.... ........|..++... .+.++.. ||.|+.|=....-.+ ........|..|+-.... .++. .||.|.
T Consensus 172 g~~~---~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~ 242 (273)
T d1jtdb_ 172 GQTT---VPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVI 242 (273)
T ss_dssp STTS---CCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEE
T ss_pred Cccc---ccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEE
Confidence 2110 1111234566555432 2233333 788999954332222 112233457777654332 3443 378898
Q ss_pred Ec
Q 009059 543 IW 544 (545)
Q Consensus 543 iW 544 (545)
.|
T Consensus 243 ~W 244 (273)
T d1jtdb_ 243 AW 244 (273)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.75 E-value=13 Score=35.00 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEE--Eec------cCCccEEEEEEcCC
Q 009059 263 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE------EHTQWITDVRFSPS 316 (545)
Q Consensus 263 ~~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~--~l~------~h~~~V~~l~~sp~ 316 (545)
-...++|+|.|||++|++--..|.|++++..+++... .+. .-......|+|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3567899999999998887557999999877765432 221 12356889999985
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.84 E-value=12 Score=33.59 Aligned_cols=231 Identities=8% Similarity=0.044 Sum_probs=123.5
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCe----EEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCC-----ee
Q 009059 273 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV---WDTENPD-----YS 340 (545)
Q Consensus 273 pdg~~latg~~dg~I~lwd~~~~~----~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~v---wd~~~~~-----~~ 340 (545)
|+...+++-+.+|.|+--.+.+.+ .-..++. .+.+..+........|+.-+..|.++. |++.... .+
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 566678888888988765543210 0011222 334555444444456666667776544 4444221 12
Q ss_pred eeEec--cCcccEEEEEEeCC--CCcEEEEEcCCCcEEEEECCCCc--------eeeEEeccCCeeEEEEeCCCCEEEEE
Q 009059 341 LRTFT--GHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS--------CAGVFKCQSGATQMRFQPRLGRILAA 408 (545)
Q Consensus 341 ~~~~~--~h~~~V~~l~~~p~--~~~ll~s~s~dg~I~lwd~~~~~--------~~~~~~~~~~v~~l~~sp~~~~l~~~ 408 (545)
+..+. .....+..+....+ ....++..+..|.++..++.... ....+.....+..+.+......++.+
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~ 161 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence 22111 12334444433221 12344466779999998864321 12233444557777777777889999
Q ss_pred ECCCeEEEEECCCC---------EEEEEecCCCCCEEE-EEEcCCCCEEEEEe-CCcEEEEEcCCCCC----cceEEE--
Q 009059 409 AIENYISILDVETQ---------VCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHE-- 471 (545)
Q Consensus 409 ~~dg~I~i~d~~~~---------~~~~~~~~h~~~I~~-l~~sp~g~~l~s~s-dg~I~vwd~~~~~~----~~~i~~-- 471 (545)
+..|.+..|+...- .....+. ..+.|.+ ....+++..|+..+ .|..+...+..... ..-+..
T Consensus 162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k 240 (323)
T d1wp5a_ 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence 99999999987532 1222233 2344554 44555666666666 77777766543211 011111
Q ss_pred -EeeCCCceEEEEEcCCCCEEEEEEcCCeEEEEeC
Q 009059 472 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 505 (545)
Q Consensus 472 -~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~iwd~ 505 (545)
.......+..+....+...|+..+..|.+.-.++
T Consensus 241 ~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~ 275 (323)
T d1wp5a_ 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred ccccccceeeeeEecCCCCEEEEEeCCCEEEEEEh
Confidence 1222334555555556666777777776554444
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=84.38 E-value=5 Score=35.01 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=102.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCeEEEEeccCCccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCCeeeeE
Q 009059 264 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 343 (545)
Q Consensus 264 ~~V~~l~~spdg~~latg~~dg~I~lwd~~~~~~~~~l~~h~~~V~~l~~sp~~~~l~t~s~dg~I~vwd~~~~~~~~~~ 343 (545)
..|..|+.... ..++ -. ||.|..|-....-.+-.-......|..|+.-. ...+.- .|+.+..|....... ...
T Consensus 26 ~~i~~va~G~~-h~~a-l~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~--~~~~al-~dg~v~~wG~~~~gq-~~~ 98 (273)
T d1jtdb_ 26 SGVDAIAGGYF-HGLA-LK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-KDGEVIAWGGNEDGQ-TTV 98 (273)
T ss_dssp SSEEEEEECSS-EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS--SEEEEE-ETTEEEEEECCTTST-TCC
T ss_pred CCcEEEEccCC-EEEE-EE-CCEEEEEeCCCCCceeeeecccccceEEecCC--Cceeee-eeeeeeccCCCccee-ecc
Confidence 34777766322 2333 34 78998886554322211112233455555422 222222 489999998654322 111
Q ss_pred eccCcccEEEEEEeCCCCcEEEEEcCCCcEEEEECCCCceee-EEeccCCeeEEEEeCCCCEEEEEECCCeEEEEECCCC
Q 009059 344 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 422 (545)
Q Consensus 344 ~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~lwd~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~~~~~dg~I~i~d~~~~ 422 (545)
.......+..++.... ..+ .. .|+.+..|.-....... .......+..+.-. .+.++...++.++.|-....
T Consensus 99 ~~~~~~~~~~i~~~~~--~~~-~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~g~~~~~G~~~~ 171 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGAW--ASY-AL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALAVKNGGVIAWGDNYF 171 (273)
T ss_dssp CGGGGSSCCEEEEETT--EEE-EE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEEEETTEEEEEECCTT
T ss_pred ccccccceeEEeeecc--ccc-cc-ccccceecccCCCCceeeeccCCceEEEEecc---ceeeeeecccceeEeecccC
Confidence 1112233444544432 222 22 38889999754322211 11122334443322 23344455788888865432
Q ss_pred EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCcEEEEEcCCC-CCcceEEEEeeCCCceEEEEEcCCCCEEEEEEcCCeEE
Q 009059 423 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 501 (545)
Q Consensus 423 ~~~~~~~~h~~~I~~l~~sp~g~~l~s~sdg~I~vwd~~~~-~~~~~i~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~I~ 501 (545)
............|..|+.... +.+.-.||.|+.|=.... +.... ......|..++-.... .++ . .|+.|+
T Consensus 172 g~~~~~~~~~~~v~~Is~G~~--h~~~l~dG~v~~WG~n~~Gql~~~----~~~~~~v~~I~~G~~~-~~~-l-~~g~v~ 242 (273)
T d1jtdb_ 172 GQTTVPAEAQSGVDDVAGGIF--HSLALKDGKVIAWGDNRYKQTTVP----TEALSGVSAIASGEWY-SLA-L-KNGKVI 242 (273)
T ss_dssp STTSCCGGGSSSEEEEEECSS--EEEEEETTEEEEEECCTTSTTCCC----GGGGSSCCEEEECSSC-EEE-E-ETTEEE
T ss_pred CcccccccccCCccceeccce--eeEEEecCcEEEcCCCCCCccCCC----ccCCCCcEEEEeCcce-EEE-E-ECCEEE
Confidence 111111123456777765432 223234888988864332 11110 1112335555543322 233 3 478999
Q ss_pred EEeCC
Q 009059 502 LWNMT 506 (545)
Q Consensus 502 iwd~~ 506 (545)
.|-..
T Consensus 243 ~WG~~ 247 (273)
T d1jtdb_ 243 AWGSS 247 (273)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99543
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.35 E-value=19 Score=32.04 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=121.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC---CeeeeEeccCcccEEEEEEeCCCCcEEEEEcCCCcEEE---EECCC------Cc
Q 009059 315 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY---WSINN------GS 382 (545)
Q Consensus 315 p~~~~l~t~s~dg~I~vwd~~~~---~~~~~~~~~h~~~V~~l~~~p~~~~ll~s~s~dg~I~l---wd~~~------~~ 382 (545)
|+...+++-+.+|.|+--.+.+. ...-..+. ..+.+..+........+++.. ..|.++. |++.. |.
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT-~~Grvy~l~v~eiP~~~~~s~G~ 80 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFT-NKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEE-TTSEEEEEEGGGSCBCCTTSCCE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEe-cCCEEEEEeeccCcccccccccc
Confidence 56678888999999986654320 00001122 233455444443444555443 3665544 45542 22
Q ss_pred eeeE---EeccCCeeEEEEeC---CCCEEEEEECCCeEEEEECCCC--------EEEEEecCCCCCEEEEEEcCCCCEEE
Q 009059 383 CAGV---FKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQ--------VCRLKLQGHKNQVHSVCWNTSGEYLA 448 (545)
Q Consensus 383 ~~~~---~~~~~~v~~l~~sp---~~~~l~~~~~dg~I~i~d~~~~--------~~~~~~~~h~~~I~~l~~sp~g~~l~ 448 (545)
.+.. +.....+..+.... ...+++..+..|.++..++..- .....+. ....+..+........++
T Consensus 81 pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~ 159 (323)
T d1wp5a_ 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEE
T ss_pred cceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEE
Confidence 2221 12233344433332 3578999999999999986432 1122333 455677777766666666
Q ss_pred EEe-CCcEEEEEcCCCC----CcceEEEEee-CCCceEE-EEEcCCCCEEEEEEcCCeEEEEeCCCCe--------EEEe
Q 009059 449 SVS-DELVRVWSIGSGS----KGECIHELSC-TGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENK--------TLTL 513 (545)
Q Consensus 449 s~s-dg~I~vwd~~~~~----~~~~i~~~~~-~~~~v~~-~~~sp~~~~l~~~~~dg~I~iwd~~~~~--------~~~~ 513 (545)
..+ .|.+..|+...-. ...-+.-+.- ....+.. +.+.+++..|++.+..|..+...+.... ...+
T Consensus 160 l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~ 239 (323)
T d1wp5a_ 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccc
Confidence 666 8888888875421 1111222221 2334444 4555677889999999987776553321 1111
Q ss_pred ---ccCCCCeeEEEEeCCCCEEEEEeCCCcEE
Q 009059 514 ---SAHDKLVSSLAASTVNGMVASASHDKCVK 542 (545)
Q Consensus 514 ---~~h~~~V~~l~~spd~~~las~s~Dg~I~ 542 (545)
......|.++....+...|+..+..|.+.
T Consensus 240 k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~ 271 (323)
T d1wp5a_ 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred cccccccceeeeeEecCCCCEEEEEeCCCEEE
Confidence 11223466666666666666666777653
|