Citrus Sinensis ID: 009075

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MAAVADQDMMRIESLIFDKKAHGRPHQYYQNQTREENSRSGSAKAIVGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINYL
cccccccccEEEEEEEEEccccccccccccccEEEEcccEEEEEEEcccEEEEEcEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEEEEccEEEEEEccEEEccccccccccccccccccccccccccccEEcEEEEccccEEEEcccEEEcccccHHHHccccccccccccEEEEEEEEEcEEEEEEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEcccccccccccccccccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEccccccEEEEEEEEEEEEEcccEEEEEEEEcccccccccccccccEEEEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEEEEcc
cccHHcHHHHHHHHHHEccccccccccEEcccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEccEccccccEEEEEEcEEEEccccccccccccccccccccccccccccEEEEEEccccEEEEEccccEEccccHHHHHHHccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEcccHccEEEccccccEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEccEEEEEEcccccccccEEEEEEEEEEccccccccccEcccEEEEccccccccHHcccccccccccccccccccccccEEEEEEEEEEccc
MAAVADQDMMRIESLIfdkkahgrphqyyqnqtreensrsgsakaivgnttkqhSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQrgaesrkarrldsfeynaiscrahsasitdfggvgdgktsnTKAFKDAINQLSqyssdggaqlyvpagkwltgsfnLISHFTLYLHKDAFLLAsqdlnewpvikplpsygrgrdaaagrytslifgtnltdvivtgdngtidgqGALWWQQFhkgklkytrpylmefmytdniqissltllnspswnvhpvyssnilvqgitiiapvtspntdginpdsctntriedcyivsgddcvavksgwdeygiaygmptKQLVIRRLTCISPYSATIAlgsemsggiQDVRAEDIKAINTESGVRIKtavgrggyvkdIYVRGMTMHTMKWAFWMtgnygshadnhydpkalpviqginyrdIVADNVSMAARLegisgdpftgiCIANATIgmaakhkkvpwtcadiggmtsgvtpppcellpdqgpekiracdfpteslpidmveMKKCTYRINYL
maavadqdMMRIESlifdkkahgrPHQYyqnqtreensrsgsakaivgnttkqhskitYLITTMELSRMSRLRSQVTKLVPLLIVVALlsqrgaesrkarrldsfeynaiscrahsasitdfggvGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAintesgvriktavgrggyvkDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDfpteslpidmvemkkctyrinyl
MAAVADQDMMRIESLIFDKKAHGRPHQYYQNQTREENSRSGSAKAIVGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINYL
*****************************************************HSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQR********RLDSFEYNAISCRAHSASITDFGGVG*********FKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELL*******IRACDFPTESLPIDMVEMKKCTYRIN**
********MMRIESLIFDKKAHGRPHQYYQNQTREENSRSGSAKAIVGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARR*DSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCE************CDFPTESLPIDMVEMKKCTYRINYL
MAAVADQDMMRIESLIFDKKAHGRPHQYY**************KAIVGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQ********RRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINYL
*****DQD*MRIESLIFDKKAHGRPHQ*******************VGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINYL
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAAVADQDMMRIESLIFDKKAHGRPHQYYQNQTREENSRSGSAKAIVGNTTKQHSKITYLITTMELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas yes no 0.827 0.916 0.831 0.0
Q9LW07456 Probable polygalacturonas no no 0.547 0.653 0.294 4e-28
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.674 0.714 0.276 2e-27
P27644312 Polygalacturonase OS=Rhiz yes no 0.373 0.650 0.334 5e-25
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.715 0.767 0.275 2e-23
O23147431 Polygalacturonase ADPG1 O no no 0.663 0.837 0.252 4e-23
P43212514 Polygalacturonase OS=Cryp N/A no 0.707 0.749 0.255 7e-22
Q8RY29433 Polygalacturonase ADPG2 O no no 0.654 0.822 0.271 7e-22
O22818405 Probable polygalacturonas no no 0.669 0.898 0.249 9e-19
P35336467 Polygalacturonase OS=Acti N/A no 0.654 0.762 0.25 2e-18
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/450 (83%), Positives = 413/450 (91%)

Query: 94  AESRKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQ 153
            E RK R L++ EY+AISCRAHSAS+ DFGGVGDG+T NTKAF+DA+++LS+Y S+GGAQ
Sbjct: 40  GECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQ 99

Query: 154 LYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTS 213
           LYVPAGKWLTGSF+L SHFTL+LH+DA LLASQD+++WPVIKPLPSYGRGRDAAAGRYTS
Sbjct: 100 LYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTS 159

Query: 214 LIFGTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLN 273
           LIFGTNLTDVI+TGDNGTIDGQG LWWQ+FH GKLKYTRPYL+E MY+ +IQIS+LTLLN
Sbjct: 160 LIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLN 219

Query: 274 SPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 333
           SPSWNVHPVYS NIL+QGITI+APV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG
Sbjct: 220 SPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 279

Query: 334 WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIK 393
           WDEYGIAYGMPTKQLVIRRLTCISPYSA IALGSEMSGGIQDVRAEDI AIN+ESG+RIK
Sbjct: 280 WDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIK 339

Query: 394 TAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADN 453
           T +GRGGYVKDIYVRGMTM TMKWAFWMTGNYGSHADNHYDPKA PVIQGINYRD+VA+N
Sbjct: 340 TGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAEN 399

Query: 454 VSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQG 513
           VSMAARLEGI  DPFTGICI+N TI +AAK KKVPWTC D+ G++SGVTP PC  LPDQG
Sbjct: 400 VSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQG 459

Query: 514 PEKIRACDFPTESLPIDMVEMKKCTYRINY 543
           PEK   C+FP ESLPID VE++KC+Y INY
Sbjct: 460 PEKTSLCNFPAESLPIDTVELQKCSYGINY 489

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
255541678472 polygalacturonase, putative [Ricinus com 0.867 1.0 0.810 0.0
224064057470 predicted protein [Populus trichocarpa] 0.840 0.972 0.831 0.0
356560736479 PREDICTED: probable polygalacturonase-li 0.876 0.995 0.811 0.0
356520375482 PREDICTED: probable polygalacturonase-li 0.882 0.995 0.802 0.0
359489656479 PREDICTED: probable polygalacturonase-li 0.827 0.939 0.831 0.0
223635599491 RecName: Full=Probable polygalacturonase 0.827 0.916 0.831 0.0
356568425484 PREDICTED: probable polygalacturonase-li 0.884 0.993 0.786 0.0
225426168480 PREDICTED: probable polygalacturonase [V 0.830 0.941 0.816 0.0
356530050484 PREDICTED: probable polygalacturonase-li 0.884 0.993 0.788 0.0
356522584498 PREDICTED: probable polygalacturonase-li 0.869 0.949 0.781 0.0
>gi|255541678|ref|XP_002511903.1| polygalacturonase, putative [Ricinus communis] gi|223549083|gb|EEF50572.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  835 bits (2157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/481 (81%), Positives = 437/481 (90%), Gaps = 9/481 (1%)

Query: 64  MELSRMSRLRSQVTKLVPLLIVVALLSQRGAESRKARRLDSFEYNAISCRAHSASITDFG 123
           MEL  +S ++ +VT ++ + +++ALLS RGAESRKAR LDSFEYNAISCRAHSASITDFG
Sbjct: 1   MELLLISSIKPRVTNVISVFVILALLSARGAESRKARVLDSFEYNAISCRAHSASITDFG 60

Query: 124 GVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLL 183
           GVGDG TSNTKAF+DAI  LSQY++DGG+QL+VPAGKWLTGSF+L SHFTL+LHKDA LL
Sbjct: 61  GVGDGITSNTKAFQDAIAHLSQYATDGGSQLFVPAGKWLTGSFSLTSHFTLFLHKDAVLL 120

Query: 184 ASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQF 243
            SQDL EWP++KPLPSYGRGRDAAAGRY+SLIFGTNLTD+IVTG+NGTIDGQGA WWQQF
Sbjct: 121 GSQDLKEWPLLKPLPSYGRGRDAAAGRYSSLIFGTNLTDIIVTGNNGTIDGQGAFWWQQF 180

Query: 244 HKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNT 303
            KGKLKYTRPYL+E MY+DNIQIS+LTLLNSPSWNVHPVYSSNIL+QGITIIAPVTSPNT
Sbjct: 181 KKGKLKYTRPYLIEIMYSDNIQISNLTLLNSPSWNVHPVYSSNILIQGITIIAPVTSPNT 240

Query: 304 DGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSATI 363
           DGINP         DCYI+SGDDCVAVKSGWDEYGIA+GMPTKQLVIRRLTCISPYSATI
Sbjct: 241 DGINP---------DCYIISGDDCVAVKSGWDEYGIAFGMPTKQLVIRRLTCISPYSATI 291

Query: 364 ALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTG 423
           ALGSEMSGGIQDVRAEDI AI+TESGVRIKTAVGRGGYVKDIYV+ MTMHTMKWAFWMTG
Sbjct: 292 ALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWAFWMTG 351

Query: 424 NYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAK 483
           NYGSHAD +YDP ALPVI+GINYRD+VADNVSMAARLEGISGDPF  ICI+N TIGMAAK
Sbjct: 352 NYGSHADKNYDPNALPVIEGINYRDMVADNVSMAARLEGISGDPFKQICISNVTIGMAAK 411

Query: 484 HKKVPWTCADIGGMTSGVTPPPCELLPDQGPEKIRACDFPTESLPIDMVEMKKCTYRINY 543
            KK+PWTC DI G+T+GV+P PC+LLPDQGPEK+ ACDFP E++PID V+ +KCTY ++Y
Sbjct: 412 AKKIPWTCTDIEGITTGVSPRPCDLLPDQGPEKLTACDFPPENIPIDSVQFQKCTYSMHY 471

Query: 544 L 544
           +
Sbjct: 472 M 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064057|ref|XP_002301370.1| predicted protein [Populus trichocarpa] gi|222843096|gb|EEE80643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560736|ref|XP_003548644.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356520375|ref|XP_003528838.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|359489656|ref|XP_003633958.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|223635599|sp|A7PZL3.1|PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase Back     alignment and taxonomy information
>gi|356568425|ref|XP_003552411.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|225426168|ref|XP_002278930.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530050|ref|XP_003533597.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356522584|ref|XP_003529926.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.819 0.936 0.752 5.7e-194
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.832 0.915 0.693 6.1e-181
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.838 0.972 0.641 3.7e-167
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.836 0.953 0.597 4.9e-156
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.805 0.929 0.496 3.2e-120
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.75 0.918 0.5 9e-109
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.737 0.844 0.497 1.1e-108
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.718 0.870 0.486 3e-101
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.777 0.929 0.457 9.4e-98
TAIR|locus:2083383446 AT3G06770 [Arabidopsis thalian 0.75 0.914 0.448 7.6e-96
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1879 (666.5 bits), Expect = 5.7e-194, P = 5.7e-194
 Identities = 340/452 (75%), Positives = 396/452 (87%)

Query:    97 RKARRLDSFEYNAISCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYV 156
             R ++  ++FEY AI CR+HSASIT++GGVGDGKT NTKAF+ A++ LSQYSS+GGAQL+V
Sbjct:    25 RVSQSFETFEYTAIICRSHSASITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFV 84

Query:   157 PAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIF 216
             PAGKWLTGSFNL SHFTL+LHKDA LLA+QDLNE+P++K LPSYGRGRDAA GR+ SLIF
Sbjct:    85 PAGKWLTGSFNLTSHFTLFLHKDAILLAAQDLNEYPILKALPSYGRGRDAAGGRFASLIF 144

Query:   217 GTNLTDVIVTGDNGTIDGQGALWWQQFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPS 276
             GTNL+DVI+TG+NGTIDGQG+ WWQ+FH GKLKYTRPYL+E M++D IQIS+LT L+SPS
Sbjct:   145 GTNLSDVIITGNNGTIDGQGSFWWQKFHGGKLKYTRPYLIELMFSDTIQISNLTFLDSPS 204

Query:   277 WNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDE 336
             WN+HPVYSSNI+V+G+TIIAPV SPNTDGINPDSCTNTRIEDCYI+SGDDC+AVKSGWDE
Sbjct:   205 WNIHPVYSSNIIVKGVTIIAPVKSPNTDGINPDSCTNTRIEDCYIISGDDCIAVKSGWDE 264

Query:   337 YGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAV 396
             YGI++GMPTK LVIRRLTCISPYSA IALGSEMSGGI+DVRAEDI A  TESGVRIKTAV
Sbjct:   265 YGISFGMPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAV 324

Query:   397 GRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSM 456
             GRG +VK+IYV+GM +HTMKW FWMTGNY +HAD+HYDP ALP I GINYRDIVA+NVSM
Sbjct:   325 GRGAFVKNIYVKGMNLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAENVSM 384

Query:   457 AARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTSGVTPPPCELLPDQGPEK 516
             A RLEGISGDPFTGICI+NATI MAAKHKK  W C+D+ G+TSGV P PC+LL  Q  E 
Sbjct:   385 AGRLEGISGDPFTGICISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLDGQESET 444

Query:   517 IR------ACDFPTESLPIDMVEMKKCTYRIN 542
              +       CDFPT+ L ID VE+K C+Y+++
Sbjct:   445 TKKKMIDGGCDFPTDVLEIDNVELKTCSYQMS 476
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7PZL3PGLR_VITVI3, ., 2, ., 1, ., 1, 50.83110.82720.9164yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0039009101
hypothetical protein (471 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-60
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-30
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 7e-30
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 5e-29
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 2e-20
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-19
PLN03010409 PLN03010, PLN03010, polygalacturonase 5e-19
PLN02155394 PLN02155, PLN02155, polygalacturonase 4e-13
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 7e-09
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  208 bits (530), Expect = 2e-60
 Identities = 107/319 (33%), Positives = 153/319 (47%), Gaps = 29/319 (9%)

Query: 117 ASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYL 176
            S++D G VGDG T NT A + AI+  +     GG  + +PAG +L+G   L S+ TL+L
Sbjct: 83  FSVSDDGAVGDGATDNTAAIQAAIDACASA---GGGTVLLPAGTYLSGPLFLKSNVTLHL 139

Query: 177 HKDAFLLASQDLNEWP--------VIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGD 228
            + A LLAS +  ++P           P   Y    D A      L  G     +     
Sbjct: 140 AEGATLLASSNPKDYPSFTSRFNGNSGP-YVYATDSDNAMISGEGLADGKADLLIAGNSS 198

Query: 229 NG-TIDGQGALWWQQFHKGKLKYT--------------RPYLMEFMYTDNIQISSLTLLN 273
           N   I G+G +    + +G   ++              RP  +      N+ +  L + N
Sbjct: 199 NRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKN 258

Query: 274 SPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG 333
           SP W VHPV   N+  + +TI A     NTDG +P SC+N  IE C   +GDDC+A+KSG
Sbjct: 259 SPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSG 317

Query: 334 WDEYGIAYGMPTKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIK 393
               G     P++ +VIR     S +   + LGSEM GG+Q++  ED    NT+ G+RIK
Sbjct: 318 AGLDGKKGYGPSRNIVIRNCYFSSGHGG-LVLGSEMGGGVQNITVEDCVMDNTDRGLRIK 376

Query: 394 TAVGRGGYVKDIYVRGMTM 412
           T  GRGG V++I      M
Sbjct: 377 TNDGRGGGVRNIVFEDNKM 395

Length = 542
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.85
PLN03003456 Probable polygalacturonase At3g15720 99.83
PLN02155394 polygalacturonase 99.82
PLN02793443 Probable polygalacturonase 99.82
PLN03010409 polygalacturonase 99.82
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.81
PLN02218431 polygalacturonase ADPG 99.8
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.77
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.59
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.32
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.14
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.63
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.62
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.55
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.53
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.35
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.35
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.17
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.12
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.11
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.08
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.04
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.03
smart00656190 Amb_all Amb_all domain. 98.0
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.97
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.9
PLN02480343 Probable pectinesterase 97.9
smart00656190 Amb_all Amb_all domain. 97.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.66
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.65
PLN02176340 putative pectinesterase 97.57
PLN02682369 pectinesterase family protein 97.41
PLN02773317 pectinesterase 97.33
PLN02634359 probable pectinesterase 97.25
PLN02432293 putative pectinesterase 97.09
PLN02497331 probable pectinesterase 97.07
PRK10531422 acyl-CoA thioesterase; Provisional 96.94
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.92
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.9
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 96.89
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.89
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.86
PLN02304379 probable pectinesterase 96.83
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.79
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.79
PLN02671359 pectinesterase 96.79
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.78
PLN02468565 putative pectinesterase/pectinesterase inhibitor 96.78
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.74
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.67
PLN02665366 pectinesterase family protein 96.63
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.62
PLN02301548 pectinesterase/pectinesterase inhibitor 96.6
PLN02916502 pectinesterase family protein 96.54
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.51
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.47
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.43
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 96.41
PLN02314586 pectinesterase 96.36
PLN02197588 pectinesterase 96.22
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.19
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.15
PF1221867 End_N_terminal: N terminal extension of bacterioph 95.96
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.83
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 95.34
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.08
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.22
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.1
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 91.67
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 90.81
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 87.15
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 86.96
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 86.11
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 84.74
PLN02773317 pectinesterase 83.06
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 81.18
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.7e-72  Score=594.95  Aligned_cols=363  Identities=25%  Similarity=0.450  Sum_probs=319.8

Q ss_pred             CceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCC-eEEeeeEEE----eeeeEEeeecCcEEEecCC
Q 009075          113 RAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAG-KWLTGSFNL----ISHFTLYLHKDAFLLASQD  187 (544)
Q Consensus       113 ~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G-~Yl~g~i~l----~S~~tl~l~~ga~l~~~~~  187 (544)
                      .+.++||+||||+|||++|||+|||+||+++|.  ..+|++|+||+| +|+++++.|    +|+++|+++  ++|+++.+
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~--~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d  124 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACS--SKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD  124 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhc--cCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence            458999999999999999999999999995432  267899999999 599999999    899999996  89999999


Q ss_pred             CCCCCCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCCchhhhhccc---CCCCCCCCeeEEEEeeecE
Q 009075          188 LNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHK---GKLKYTRPYLMEFMYTDNI  264 (544)
Q Consensus       188 ~~~~~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~ww~~~~~---~~~~~~rp~~i~~~~~~nv  264 (544)
                      +++|+..               ....||++.+.+||+|+|. |+|||+|+.||.....   ......||++|.|.+|+|+
T Consensus       125 ~~~w~~~---------------~~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv  188 (443)
T PLN02793        125 PDVWKGL---------------NPRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDL  188 (443)
T ss_pred             hHHccCC---------------CCceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccE
Confidence            9888632               1235899999999999997 9999999999975321   1123468999999999999


Q ss_pred             EEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCc
Q 009075          265 QISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMP  344 (544)
Q Consensus       265 ~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~  344 (544)
                      +|++++++|||+|++++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||++|++           
T Consensus       189 ~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------  257 (443)
T PLN02793        189 RVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------  257 (443)
T ss_pred             EEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------
Confidence            999999999999999999999999999999999989999999999999999999999999999999986           


Q ss_pred             eeeEEEEEEEEeCCCCceEEEccc----ccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEE
Q 009075          345 TKQLVIRRLTCISPYSATIALGSE----MSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFW  420 (544)
Q Consensus       345 s~nI~I~n~~~~~~~~~gIsIGs~----~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~  420 (544)
                      ++||+|+||+|..+  |||+|||+    +.++|+||+|+||+|.++.+|+|||||+|++|.|+||+|+||+|+++.+||.
T Consensus       258 s~nI~I~n~~c~~G--hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~  335 (443)
T PLN02793        258 SSRIKIRNIACGPG--HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPII  335 (443)
T ss_pred             cCCEEEEEeEEeCC--ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEE
Confidence            89999999999853  79999997    3468999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCCCCCCCCCeEEeEEEEEEEEecc-CeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeeccCCCC
Q 009075          421 MTGNYGSHADNHYDPKALPVIQGINYRDIVADNV-SMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIGGMTS  499 (544)
Q Consensus       421 I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~-~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~g~~~  499 (544)
                      |++.|++.......+...+.|+||+|+||+++.. ..++.|.|+++.||+||+|+||+++...++ ...+.|.|++|...
T Consensus       336 I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~  414 (443)
T PLN02793        336 IDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSS  414 (443)
T ss_pred             EEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeEC
Confidence            9999976432222334456899999999999986 568899999999999999999999976433 56789999999874


Q ss_pred             c-cCCCCCCCC
Q 009075          500 G-VTPPPCELL  509 (544)
Q Consensus       500 ~-v~p~~c~~~  509 (544)
                      + +.|+||.+.
T Consensus       415 ~~~~p~~C~~~  425 (443)
T PLN02793        415 GQVYPPPCFSD  425 (443)
T ss_pred             CeEcCCccccC
Confidence            4 889999854

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-44
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 7e-15
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 2e-14
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 2e-10
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 7e-07
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-06
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 4e-06
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-05
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  175 bits (444), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 198/402 (49%), Gaps = 55/402 (13%)
Query: 115 HSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTL 174
              ++ DFG  GDG+T  +++FK AI +LS+    GG +L VP G +LTG  +L S+  L
Sbjct: 26  REVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIEL 82
Query: 175 YLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDG 234
           ++ K             PV+       R        Y+ L++  +  +V +TG +G +DG
Sbjct: 83  HV-KGTIKFIPDPERYLPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SGVLDG 135
Query: 235 QG--ALWW----------------QQFHKGKLK------------------YTRPYLMEF 258
                 WW                QQ    KLK                  Y RP  ++F
Sbjct: 136 SADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQF 195
Query: 259 MYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIED 318
               N+ +  + ++NSP W +HPV S N++++ I I +  T PN DGI+P+SC    IE 
Sbjct: 196 YRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEK 253
Query: 319 CYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS-ATIALGSEMSGGIQDVR 377
           C   +GDD V +KSG D  G   G+P++ +++R    IS  S   + +GSEMSGG+++V 
Sbjct: 254 CRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313
Query: 378 AEDIKAINTESGVRIKTAVGRGGYVKDI-YVRGMTMHTMKWAFWMTGNYGSHADNHYDPK 436
           A +   +N E  +R+KT   RGGY+++I ++  + ++  +    +   Y    DN  + +
Sbjct: 314 ARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRY----DNE-EGE 368
Query: 437 ALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATI 478
            LPV++ +  +++ A     A R+EG+  D    I I++  I
Sbjct: 369 YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTII 410
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-136
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-135
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-126
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-83
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-80
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 8e-80
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-76
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 4e-74
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-73
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-66
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-57
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-51
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-45
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-40
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-37
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-28
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-09
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 7e-09
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-05
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  402 bits (1034), Expect = e-136
 Identities = 118/446 (26%), Positives = 203/446 (45%), Gaps = 57/446 (12%)

Query: 111 SCRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLIS 170
                  ++ DFG  GDG+T  +++FK AI +LS+    GG +L VP G +LTG  +L S
Sbjct: 22  QIPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKS 78

Query: 171 HFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNG 230
           +  L++     +    D   +  +       R        Y+ L++  +  +V +TG +G
Sbjct: 79  NIELHV--KGTIKFIPDPERYLPVV----LTRFEGIELYNYSPLVYALDCENVAITG-SG 131

Query: 231 TIDGQGA--LWWQQFHK----------------------------------GKLKYTRPY 254
            +DG      WW    K                                  GK  Y RP 
Sbjct: 132 VLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPS 191

Query: 255 LMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNT 314
            ++F    N+ +  + ++NSP W +HPV S N++++ I I +    PN DGI+P+SC   
Sbjct: 192 FVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM 249

Query: 315 RIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS-ATIALGSEMSGGI 373
            IE C   +GDD V +KSG D  G   G+P++ +++R    IS  S   + +GSEMSGG+
Sbjct: 250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGV 309

Query: 374 QDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTM-HTMKWAFWMTGNYGSHADNH 432
           ++V A +   +N E  +R+KT   RGGY+++I+       +  +    +   Y +     
Sbjct: 310 RNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---- 365

Query: 433 YDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCA 492
            + + LPV++ +  +++ A     A R+EG+  D    I I++  I  A     + +   
Sbjct: 366 -EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQL 424

Query: 493 DIGGMTSGVTPPPCELLPDQGPEKIR 518
            +  +   +     E L  +G   ++
Sbjct: 425 GMENVI--MNGSRFEKLYIEGKALLK 448
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.84
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.84
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.83
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.83
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.82
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.81
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.8
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.79
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.68
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.67
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.54
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.52
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.31
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.29
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.29
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.13
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.06
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.05
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.56
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.5
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.41
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.36
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.34
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.32
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.2
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.18
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.15
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.1
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.09
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.03
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.03
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.02
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.96
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.94
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.92
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.8
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.73
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.69
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.68
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.65
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.59
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.58
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.58
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.51
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.43
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.41
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.25
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.86
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.11
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.12
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.1
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.01
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.03
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.79
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 91.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 90.99
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 90.82
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 86.48
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 83.87
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=8.5e-69  Score=572.35  Aligned_cols=352  Identities=33%  Similarity=0.607  Sum_probs=314.2

Q ss_pred             CCceeEEEeecCccCCCccchHHHHHHHHHHhhccCCCCCcEEEEcCCeEEeeeEEEeeeeEEeeecCcEEEecCCCCCC
Q 009075          112 CRAHSASITDFGGVGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEW  191 (544)
Q Consensus       112 ~~~~~~~v~dfGa~gDg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~Yl~g~i~l~S~~tl~l~~ga~l~~~~~~~~~  191 (544)
                      .++.++||++|||+|||++|||+|||+||++|++   .+|++|+||+|+|+++++.|+|+++|+++  |+|+++.++++|
T Consensus        23 ~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~---~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~~y   97 (448)
T 3jur_A           23 IPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPERY   97 (448)
T ss_dssp             CCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH---HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGGGG
T ss_pred             CCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh---cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHHHh
Confidence            4567999999999999999999999999999875   68999999999999999999999999997  999999999999


Q ss_pred             -CCCCCCCCCCCccccCCCcceeeEEEeceeceEEeCcccEEeCCC--chhhhhcccC----------------------
Q 009075          192 -PVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQG--ALWWQQFHKG----------------------  246 (544)
Q Consensus       192 -~~~~~l~s~g~g~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G--~~ww~~~~~~----------------------  246 (544)
                       |...   ...+|.+  ...+.+||++.+++||+|+|. |+|||+|  +.||......                      
T Consensus        98 ~p~~~---~~~~G~~--~~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~  171 (448)
T 3jur_A           98 LPVVL---TRFEGIE--LYNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA  171 (448)
T ss_dssp             CSCEE---EEETTEE--EEESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHH
T ss_pred             Ccccc---ccccccc--ccCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhhhh
Confidence             4321   1122322  224567999999999999997 9999999  8899754310                      


Q ss_pred             ------------CCCCCCCeeEEEEeeecEEEEeeEEeeCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccE
Q 009075          247 ------------KLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNT  314 (544)
Q Consensus       247 ------------~~~~~rp~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV  314 (544)
                                  .....||++|.|.+|+|++|+|++++|||+|++++..|+|++|++++|.++  ++|+||||+.+|++|
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence                        123579999999999999999999999999999999999999999999997  689999999999999


Q ss_pred             EEEccEEecCCceeeccCCCCccCccccCceeeEEEEEEEEeCCCC-ceEEEcccccCCeEEEEEEeeEEEcCCceEEEE
Q 009075          315 RIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYS-ATIALGSEMSGGIQDVRAEDIKAINTESGVRIK  393 (544)
Q Consensus       315 ~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n~~~~~~~~-~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ik  393 (544)
                      +|+||+|.+|||||++|+|++.+|...+.|++||+|+||+|++..+ +||+|||++.++++||+|+||+|.++.+|++||
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIK  329 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLK  329 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEE
Confidence            9999999999999999999998888888999999999999954333 499999999999999999999999999999999


Q ss_pred             eecCCCCceeeEEEEeeEecccceeE-EEEeecCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEccCCCCeecEE
Q 009075          394 TAVGRGGYVKDIYVRGMTMHTMKWAF-WMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGIC  472 (544)
Q Consensus       394 t~~g~~g~v~nI~~~ni~~~~v~~~i-~I~~~y~~~~~~~~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~~~~i~~I~  472 (544)
                      ++.+++|.|+||+|+||+|.++.+|+ .|++.|+.+     .+...+.|+||+|+||++++...++.|.|+++.||++|+
T Consensus       330 t~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~  404 (448)
T 3jur_A          330 TNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDIL  404 (448)
T ss_dssp             CCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEE
T ss_pred             EEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEE
Confidence            99999999999999999999999998 999999754     123357999999999999988889999999999999999


Q ss_pred             EEeEEEEec
Q 009075          473 IANATIGMA  481 (544)
Q Consensus       473 ~~NV~~~~~  481 (544)
                      |+||+++..
T Consensus       405 ~~nv~i~~~  413 (448)
T 3jur_A          405 ISDTIIEGA  413 (448)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEEcc
Confidence            999999864
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 544
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 4e-73
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-58
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-57
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-50
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-49
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-48
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-46
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-44
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-17
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  235 bits (600), Expect = 4e-73
 Identities = 82/384 (21%), Positives = 148/384 (38%), Gaps = 43/384 (11%)

Query: 125 VGDGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK---WLTGSFNLISHFTLYLHKDAF 181
           +    ++ T   + A+N   Q     G  + + AG    +L+G  +L S  +L + K   
Sbjct: 18  LKADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 182 LLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQ 241
           L A  +   +      PS     D       + I   + T+  +    GTIDGQG +  Q
Sbjct: 73  LRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIY-GPGTIDGQGGVKLQ 128

Query: 242 -----------QFHKGKLKYTRPYLMEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQ 290
                           KLK   P L++   + N  + +++L+NSP+++V           
Sbjct: 129 DKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAW 188

Query: 291 GITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVI 350
             TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+            T+ + I
Sbjct: 189 KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISI 242

Query: 351 RRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGM 410
                 + +  +I      + G+ +V  +D+K   T +G+RIK+     G V  +    +
Sbjct: 243 LHNDFGTGHGMSI---GSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNV 299

Query: 411 TMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTG 470
            M  +     +   Y        +   +P    I ++D+ ++       L G +      
Sbjct: 300 VMKNVAKPIVIDTVYEKK-----EGSNVPDWSDITFKDVTSET-KGVVVLNGENAKKPIE 353

Query: 471 ICIANATIGMAAKHKKVPWTCADI 494
           + + N  +   +      W   ++
Sbjct: 354 VTMKNVKLTSDS-----TWQIKNV 372
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.81
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.77
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.76
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.74
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.74
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.71
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.64
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.63
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.42
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.69
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.47
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.02
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.95
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.84
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.7
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.66
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.65
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.47
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.43
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.17
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.11
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.09
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.04
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.83
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.66
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.91
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.76
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 93.77
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 93.4
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 89.37
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 89.3
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.24
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=1.1e-59  Score=491.94  Aligned_cols=340  Identities=25%  Similarity=0.388  Sum_probs=294.8

Q ss_pred             CCccchHHHHHHHHHHhhccCCCCCcEEEEcCCe---EEeeeEEEeeeeEEeeecCcEEEecCCCCCCCCCCCCCCCCCc
Q 009075          127 DGKTSNTKAFKDAINQLSQYSSDGGAQLYVPAGK---WLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRG  203 (544)
Q Consensus       127 Dg~tddT~Aiq~AI~~~~~~~~~gg~~v~iP~G~---Yl~g~i~l~S~~tl~l~~ga~l~~~~~~~~~~~~~~l~s~g~g  203 (544)
                      ++.+|+|+|||+||++|     .+|++|+||+|+   |++|+|.|+|+++|+|++||+|+++.+.++|+..+   ....+
T Consensus        20 ~~~~~~T~aIq~AIdac-----~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~~y~~~~---~~~~~   91 (376)
T d1bhea_          20 ADSSTATSTIQKALNNC-----DQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAP---SSCGV   91 (376)
T ss_dssp             CCSSBCHHHHHHHHTTC-----CTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSGGGBSST---TCSSC
T ss_pred             CCCChhHHHHHHHHHHC-----CCCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcCCHHHccccc---ceeee
Confidence            35689999999999987     357899999997   89999999999999999999999999999997643   22222


Q ss_pred             cccCCCcceeeEEEeceeceEEeCcccEEeCCCch--------hhhhcc---cCCCCCCCCeeEEEEeeecEEEEeeEEe
Q 009075          204 RDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAL--------WWQQFH---KGKLKYTRPYLMEFMYTDNIQISSLTLL  272 (544)
Q Consensus       204 ~~~~~~~~~~~i~~~~~~nV~I~G~~GtidG~G~~--------ww~~~~---~~~~~~~rp~~i~~~~~~nv~I~~v~i~  272 (544)
                      ....+..+.+||.+.+++||+|+|. |+|||+|..        ||....   .......||++|.|.+|+|++|+|++|+
T Consensus        92 ~~~~~~~~~~~i~~~~~~Ni~ItG~-G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~nv~i~~iti~  170 (376)
T d1bhea_          92 VDKNGKGCDAFITAVSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLI  170 (376)
T ss_dssp             EESCSCCBCCSEEEESCBSCEEECS-SEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEE
T ss_pred             EeccCcccceeEEecCcceEEEEeC-cEEecccceeecCCccchhccccccccccCCCCCCeEEEEEecccEEEEeeEEe
Confidence            2333344568999999999999997 999999974        453211   1223468999999999999999999999


Q ss_pred             eCCCCCccccCCeeEEEEeeEEECCCCCCCCCCCCCCCcccEEEEccEEecCCceeeccCCCCccCccccCceeeEEEEE
Q 009075          273 NSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRR  352 (544)
Q Consensus       273 ns~~~~i~~~~~~nv~I~~~~I~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gDD~Iai~sg~~~~G~~~~~~s~nI~I~n  352 (544)
                      |+|.|++++..|++++|++++|.++..++|+|||++.+|+||+|+||+|.++||||++|++..      ..+++||+|+|
T Consensus       171 ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~------~~~~~ni~i~n  244 (376)
T d1bhea_         171 NSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG------RAETRNISILH  244 (376)
T ss_dssp             CCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTT------SCCEEEEEEEE
T ss_pred             cCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeecccC------CCCcceEEEEe
Confidence            999999999999999999999999888899999999999999999999999999999999743      34699999999


Q ss_pred             EEEeCCCCceEEEcccccCCeEEEEEEeeEEEcCCceEEEEeecCCCCceeeEEEEeeEecccceeEEEEeecCCCCCCC
Q 009075          353 LTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNH  432 (544)
Q Consensus       353 ~~~~~~~~~gIsIGs~~~g~v~nI~v~n~~~~~~~~Gi~Ikt~~g~~g~v~nI~~~ni~~~~v~~~i~I~~~y~~~~~~~  432 (544)
                      |+|.++  +|++||++.. +++||+|+||+|.++.+|++||++.+++|.|+||+|+|++|+++..||.|++.|....   
T Consensus       245 ~~~~~~--~g~~iGs~~~-~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~---  318 (376)
T d1bhea_         245 NDFGTG--HGMSIGSETM-GVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKE---  318 (376)
T ss_dssp             EEECSS--SCEEEEEEES-SEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCC---
T ss_pred             eEEecC--CCceeccccC-CEEEEEEEeeeEcCCCceEEEEecCCCccEEEEEEEEeEEEeccCccEEEEeecCCCC---
Confidence            999863  6999999855 5999999999999999999999999999999999999999999999999999886442   


Q ss_pred             CCCCCCCeEEeEEEEEEEEeccCeeEEEEccCCCCeecEEEEeEEEEecCCCCCcCeEeeecc
Q 009075          433 YDPKALPVIQGINYRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADIG  495 (544)
Q Consensus       433 ~~~~~~~~I~nItf~NI~~t~~~~a~~i~g~~~~~i~~I~~~NV~~~~~~~~~~~~~~c~nv~  495 (544)
                        +...+.|+||+|+||+++.. .++.+.|.++.+|++|+|+||+++..     ..+.|+||+
T Consensus       319 --~~~~~~i~nIt~~Ni~~~~~-~~~~l~g~~~~~~~~v~~~nv~i~~~-----~~~~~~nv~  373 (376)
T d1bhea_         319 --GSNVPDWSDITFKDVTSETK-GVVVLNGENAKKPIEVTMKNVKLTSD-----STWQIKNVN  373 (376)
T ss_dssp             --CCCCCEEEEEEEEEEEECSC-CEEEEECTTCSSCEEEEEEEEECCTT-----CEEEEESEE
T ss_pred             --CCCCCEEeeEEEEeEEEecc-eeEEEEcCCCCCceeEEEEeEEEEcC-----CCCEEEeee
Confidence              33457899999999999754 57899999999999999999999753     358898875
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure