Citrus Sinensis ID: 009077

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----

MEAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDLRN

ccccccccccEEEcccccccccccccHHHHHHHHHcccccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccEEccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHHHcccEEEEEcccccccccHHHHHHccccccccccccccccEEEEccccccccccccEEEccHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccccHHHHccccccccccccccccccccccccEEEEEcccccccccccccccEEEEcccccccccccHHHHHHcccccccccccccEEEcccccEEEEcccccHHcccccccccHHHHHHHHccccccEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHccccc

cccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHcccccccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHcccEEEcccHHHHHHHHHccccccccccHHHEEEcccccccHHHHHHHHHHccccEEEEcccccccccEEEEEcccccccccccccccccEccccEEEEEccccccccccccEEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHHcHHHccccEEEEEHcccccccccEcHHHccccHHHHHccc

MEAKQDHQEFIfrsklpdiyipnhlplhtYCFEnisqfadrpciingptgdvytyADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGAsyigatsttanpfytppeIAKQAIASKAKIIITQAVYNdkvrdlsehhgarivtidpppenclhfSELITqadeneipavkinpddvvalpyssgttglpkgvmlTHKGLVTSVAQqvdgenpnlylhkedvILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKvtvapfvpPIVLAVAksgdvdkydmssIRTVmsgaapmgkELEDAVRAklphaklgqgygmteagPVLSMCLAFakepfeiksgacgtvvrnaemkivdpdtgislprnqageICIRGAQIMKGylndreatettidkegwlhtgdigyiddddeLFIVDRLKELIKFKGFQVAPAELEAMLIahpnisdaavvpmkdeaagevPVAFVVRsngskiteDEIKQYISKQVVFYKRINrvfftdsipkapsgkilRKDLRTKLAAGDLRN

MEAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGarivtidpppeNCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVtvapfvppIVLAVAksgdvdkyDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKivdpdtgislprnqAGEICIRGAQIMKGYLNDREATettidkegwlhtgdigyiddDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVrsngskitedeikQYISKQVVFYKRINRvfftdsipkapsgkilrkdlrtklaagdlrn

MEAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEiakqaiaskakiiitqaVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDLRN

*********FIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIR********************LPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIP***********************

************RSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLR***A******

********EFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDLRN

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		544	2.2.26 [Sep-21-2011]
O24145		547	4-coumarate--CoA ligase 1	N/A	no	0.987	0.981	0.777	0.0
O24146		542	4-coumarate--CoA ligase 2	N/A	no	0.990	0.994	0.790	0.0
P31684		545	4-coumarate--CoA ligase 1	N/A	no	0.987	0.985	0.777	0.0
P31685		545	4-coumarate--CoA ligase 2	N/A	no	0.988	0.987	0.774	0.0
P14912		544	4-coumarate--CoA ligase 1	N/A	no	0.981	0.981	0.764	0.0
P14913		544	4-coumarate--CoA ligase 1	N/A	no	0.981	0.981	0.764	0.0
O24540		553	4-coumarate--CoA ligase O	N/A	no	0.970	0.954	0.775	0.0
Q9S725		556	4-coumarate--CoA ligase 2	yes	no	0.987	0.965	0.729	0.0
Q42524		561	4-coumarate--CoA ligase 1	no	no	0.990	0.960	0.728	0.0
P41636		537	4-coumarate--CoA ligase O	N/A	no	0.970	0.983	0.700	0.0

>sp\|O24145\|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1	Back alignment and function desciption

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/539 (77%), Positives = 475/539 (88%), Gaps = 2/539 (0%)

Query: 2   EAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELT 61
           E KQ   + IFRSKLPDIYIP HLPLH+YCFENIS+F+ RPC+ING    +YTYA+VELT
Sbjct: 8   ETKQSG-DLIFRSKLPDIYIPKHLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELT 66

Query: 62  SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAI 121
            RKVA GL+KLG+Q+ D IM+LL N P+FVFAF+GASY+GA ST ANP +TP E+ KQA 
Sbjct: 67  CRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAK 126

Query: 122 ASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINP 181
           AS AKIIITQ+ +  KV+D +  +  +++ ID  PE CLHFSEL TQ+DE+EIP VKI P
Sbjct: 127 ASSAKIIITQSCFVGKVKDYASENDVKVICIDSAPEGCLHFSEL-TQSDEHEIPEVKIQP 185

Query: 182 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYS 241
           DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN NLY+H EDV++CVLPLFHIYS
Sbjct: 186 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENANLYMHSEDVLMCVLPLFHIYS 245

Query: 242 LNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMS 301
           LNS+LLC LRVGAAILIMQKFDI   +EL+QKYKV++ PFVPPIVLA+AKS  VD YD+S
Sbjct: 246 LNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSPIVDSYDLS 305

Query: 302 SIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGAC 361
           S+RTVMSGAAP+GKELEDAVR K P+AKLGQGYGMTEAGPVL+MCLAFAKEPF+IKSGAC
Sbjct: 306 SVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGAC 365

Query: 362 GTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGD 421
           GTVVRNAEMKIVDPDTG SLPRNQ GEICIRG QIMKGYLND EAT  TIDKEGWLHTGD
Sbjct: 366 GTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGD 425

Query: 422 IGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPV 481
           IG+ID+DDELFIVDRLKELIK+KGFQVAPAE+EA+L+ HPNISDAAVVPMKDE AGEVPV
Sbjct: 426 IGFIDEDDELFIVDRLKELIKYKGFQVAPAEIEALLLNHPNISDAAVVPMKDEQAGEVPV 485

Query: 482 AFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540
           AFVVRSNGS ITEDE+K +ISKQV+FYKR+ RVFF +++PK+PSGKILRKDLR +LAAG
Sbjct: 486 AFVVRSNGSAITEDEVKDFISKQVIFYKRVKRVFFVETVPKSPSGKILRKDLRARLAAG 544

Nicotiana tabacum (taxid: 4097)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp\|O24146\|4CL2_TOBAC 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1	Back alignment and function description

>sp\|P31684\|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1	Back alignment and function description

>sp\|P31685\|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1	Back alignment and function description

>sp\|P14912\|4CL1_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1	Back alignment and function description

>sp\|P14913\|4CL2_PETCR 4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1	Back alignment and function description

>sp\|O24540\|4CL_VANPL 4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1	Back alignment and function description

>sp\|Q9S725\|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2	Back alignment and function description

>sp\|Q42524\|4CL1_ARATH 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1	Back alignment and function description

>sp\|P41636\|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		544
224126051		545	4-Coumarate:CoA ligase [Populus trichoca	0.994	0.992	0.847	0.0
2911799		557	4-coumarate:CoA ligase 1 [Populus tricho	0.994	0.971	0.843	0.0
255584945		557	AMP dependent CoA ligase, putative [Rici	0.979	0.956	0.846	0.0
224142261		540	4-Coumarate:CoA ligase [Populus trichoca	0.988	0.996	0.837	0.0
2911797		548	4-coumarate:CoA ligase 2 [Populus tricho	0.992	0.985	0.827	0.0
379061391		545	4-coumarate: coenzyme A ligase 5 [Populu	0.994	0.992	0.852	0.0
379061389		556	4-coumarate: coenzyme A ligase 4 [Populu	0.992	0.971	0.821	0.0
408777391		544	4-coumarate:coenzyme A ligase [Punica gr	0.990	0.990	0.837	0.0
428135550		547	4-coumarate:coenzyme A ligase 2 [Pyrus p	0.990	0.985	0.823	0.0
294516918		547	p-coumarate:CoA-ligase 2 [Sorbus aucupar	0.988	0.983	0.819	0.0

>gi\|224126051\|ref\|XP_002329649.1\| 4-Coumarate:CoA ligase [Populus trichocarpa] gi\|222870530\|gb\|EEF07661.1\| 4-Coumarate:CoA ligase [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/544 (84%), Positives = 508/544 (93%), Gaps = 3/544 (0%)

Query: 1   MEAKQDH-QEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVE 59
           MEA+ D  QEFIFRSKLPDI+IPNHLPLHTYCFEN+S+F D PC+INGPTG+++TYADVE
Sbjct: 1   MEAENDQAQEFIFRSKLPDIHIPNHLPLHTYCFENLSRFKDNPCLINGPTGEIHTYADVE 60

Query: 60  LTSRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQ 119
           LTSRKVA+GL+KLG+++GDVI+LLLQN P+FVFAFLGAS IGA STTANPFYTP E+AKQ
Sbjct: 61  LTSRKVASGLNKLGIKQGDVILLLLQNSPEFVFAFLGASIIGAISTTANPFYTPAEVAKQ 120

Query: 120 AIASKAKIIITQAVYNDKVRD-LSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVK 178
           A ASKAK+IITQAVY +KV+  + E+   +IVT+D PPEN LHFSEL T +DE++IPAV+
Sbjct: 121 ATASKAKLIITQAVYAEKVQQFVKENDHVKIVTVDSPPENYLHFSEL-TNSDEDDIPAVE 179

Query: 179 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFH 238
           INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H++DVILCVLPLFH
Sbjct: 180 INPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHEKDVILCVLPLFH 239

Query: 239 IYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKY 298
           IYSLNSVLLC LRVG+AIL+MQKF+IV LMELVQKYKVT+APFVPP+VLAVAK   VDKY
Sbjct: 240 IYSLNSVLLCGLRVGSAILLMQKFEIVTLMELVQKYKVTIAPFVPPVVLAVAKCPVVDKY 299

Query: 299 DMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKS 358
           D+SSIRTVMSGAAPMGKELED VRAKLP+AKLGQGYGMTEAGPVLSMCLAFAKEPFEIKS
Sbjct: 300 DLSSIRTVMSGAAPMGKELEDTVRAKLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKS 359

Query: 359 GACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLH 418
           GACGTVVRNAEMKIVDPDTG SLPRNQAGEICIRG+QIMKGYLND EATE T+D +GWLH
Sbjct: 360 GACGTVVRNAEMKIVDPDTGRSLPRNQAGEICIRGSQIMKGYLNDPEATERTVDNDGWLH 419

Query: 419 TGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGE 478
           TGDIGYID DDELFIVDRLKELIK+KGFQVAPAELEAMLIAHP+ISD AVVPMKDEAAGE
Sbjct: 420 TGDIGYIDGDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPDISDCAVVPMKDEAAGE 479

Query: 479 VPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLA 538
           VP+AFVVR+NGSKITEDEIKQYISKQVVFYKRI+RVFFT++IPKAPSGKILRKDLR +LA
Sbjct: 480 VPIAFVVRANGSKITEDEIKQYISKQVVFYKRISRVFFTEAIPKAPSGKILRKDLRARLA 539

Query: 539 AGDL 542
            GDL
Sbjct: 540 TGDL 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|2911799\|gb\|AAC39366.1\| 4-coumarate:CoA ligase 1 [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|255584945\|ref\|XP_002533186.1\| AMP dependent CoA ligase, putative [Ricinus communis] gi\|223527010\|gb\|EEF29200.1\| AMP dependent CoA ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224142261\|ref\|XP_002324477.1\| 4-Coumarate:CoA ligase [Populus trichocarpa] gi\|222865911\|gb\|EEF03042.1\| 4-Coumarate:CoA ligase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|2911797\|gb\|AAC39365.1\| 4-coumarate:CoA ligase 2 [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|379061391\|gb\|AFC89541.1\| 4-coumarate: coenzyme A ligase 5 [Populus tomentosa]	Back alignment and taxonomy information

>gi\|379061389\|gb\|AFC89540.1\| 4-coumarate: coenzyme A ligase 4 [Populus tomentosa]	Back alignment and taxonomy information

>gi\|408777391\|gb\|AFU90743.1\| 4-coumarate:coenzyme A ligase [Punica granatum]	Back alignment and taxonomy information

>gi\|428135550\|gb\|AFY97682.1\| 4-coumarate:coenzyme A ligase 2 [Pyrus pyrifolia]	Back alignment and taxonomy information

>gi\|294516918\|gb\|ADE96996.1\| p-coumarate:CoA-ligase 2 [Sorbus aucuparia]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		544
TAIR\|locus:2017602		561	4CL1 "4-coumarate:CoA ligase 1	0.988	0.959	0.709	8.6e-207
TAIR\|locus:2094716		556	4CL2 "4-coumarate:CoA ligase 2	0.987	0.965	0.709	1.4e-206
TAIR\|locus:2015003		561	4CL3 "4-coumarate:CoA ligase 3	0.966	0.937	0.659	9.1e-187
TAIR\|locus:2094771		570	4CL5 "4-coumarate:CoA ligase 5	0.979	0.935	0.612	2.7e-178
TAIR\|locus:2115673		544	AT4G05160 [Arabidopsis thalian	0.965	0.965	0.404	6.2e-101
TAIR\|locus:2015499		542	ACOS5 "acyl-CoA synthetase 5"	0.976	0.979	0.370	2.2e-98
UNIPROTKB\|Q5LVA1		535	fadD "4-coumarate:CoA ligase"	0.941	0.957	0.391	1.6e-93
TIGR_CMR\|SPO_0801		535	SPO_0801 "4-coumarate:CoA liga	0.941	0.957	0.391	1.6e-93
DICTYBASE\|DDB_G0284745		551	4cl2 "4-coumarate-CoA ligase"	0.950	0.938	0.384	3e-92
DICTYBASE\|DDB_G0284831		551	4cl1 "4-coumarate-CoA ligase"	0.946	0.934	0.380	5e-92

TAIR\|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2000 (709.1 bits), Expect = 8.6e-207, P = 8.6e-207
 Identities = 388/547 (70%), Positives = 449/547 (82%)

Query:     2 EAKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELT 61
             ++  ++ + IFRSKLPDIYIPNHL LH Y F+NIS+FA +PC+INGPTG VYTY+DV + 
Sbjct:    15 QSNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVI 74

Query:    62 SRKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEXXXXXX 121
             SR++AA   KLGV + DV+MLLL NCP+FV +FL AS+ GAT+T ANPF+TP E      
Sbjct:    75 SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 134

Query:   122 XXXXXXXXXXXVYNDKVRDLSEHHGARIVTID-----PPPENCLHFSELI---TQADENE 173
                         Y DK++ L    G  IV ID     P PE CL F+EL    T+A E  
Sbjct:   135 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASE-V 193

Query:   174 IPAVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCV 233
             I +V+I+PDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H +DVILCV
Sbjct:   194 IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCV 253

Query:   234 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSG 293
             LP+FHIY+LNS++LC LRVGAAILIM KF+I  L+EL+Q+ KVTVAP VPPIVLA+AKS 
Sbjct:   254 LPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 313

Query:   294 DVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEP 353
             + +KYD+SSIR V SGAAP+GKELEDAV AK P+AKLGQGYGMTEAGPVL+M L FAKEP
Sbjct:   314 ETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEP 373

Query:   354 FEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDK 413
             F +KSGACGTVVRNAEMKIVDPDTG SL RNQ GEICIRG QIMKGYLN+  AT  TIDK
Sbjct:   374 FPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDK 433

Query:   414 EGWLHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKD 473
             +GWLHTGDIG IDDDDELFIVDRLKELIK+KGFQVAPAELEA+LI HP+I+D AVV MK+
Sbjct:   434 DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 493

Query:   474 EAAGEVPVAFVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDL 533
             EAAGEVPVAFVV+S  S+++ED++KQ++SKQVVFYKRIN+VFFT+SIPKAPSGKILRKDL
Sbjct:   494 EAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDL 553

Query:   534 RTKLAAG 540
             R KLA G
Sbjct:   554 RAKLANG 560

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR\|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0801 SPO_0801 "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284745 4cl2 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284831 4cl1 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ETN3	4CL3_ORYSJ	6, ., 2, ., 1, ., 1, 2	0.6811	0.9705	0.9530	yes	no
P69452	LCFA_ECOL6	6, ., 2, ., 1, ., 3	0.3180	0.9136	0.8859	yes	no
Q54P78	4CL2_DICDI	6, ., 2, ., 1, ., 1, 2	0.3893	0.9485	0.9364	yes	no
P31685	4CL2_SOLTU	6, ., 2, ., 1, ., 1, 2	0.7740	0.9889	0.9871	N/A	no
P14913	4CL2_PETCR	6, ., 2, ., 1, ., 1, 2	0.7644	0.9816	0.9816	N/A	no
P14912	4CL1_PETCR	6, ., 2, ., 1, ., 1, 2	0.7644	0.9816	0.9816	N/A	no
Q9S725	4CL2_ARATH	6, ., 2, ., 1, ., 1, 2	0.7292	0.9871	0.9658	yes	no
O24145	4CL1_TOBAC	6, ., 2, ., 1, ., 1, 2	0.7773	0.9871	0.9817	N/A	no
O24146	4CL2_TOBAC	6, ., 2, ., 1, ., 1, 2	0.7907	0.9908	0.9944	N/A	no
P41636	4CL_PINTA	6, ., 2, ., 1, ., 1, 2	0.7005	0.9705	0.9832	N/A	no
Q42524	4CL1_ARATH	6, ., 2, ., 1, ., 1, 2	0.7289	0.9908	0.9607	no	no
O24540	4CL_VANPL	6, ., 2, ., 1, ., 1, 2	0.7752	0.9705	0.9547	N/A	no
O07610	LCFB_BACSU	6, ., 2, ., 1, ., 3	0.3446	0.8511	0.9025	yes	no
P31684	4CL1_SOLTU	6, ., 2, ., 1, ., 1, 2	0.7773	0.9871	0.9853	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.983
3rd Layer	1.13.12.7	LOW CONFIDENCE prediction!
4th Layer	6.2.1.12	0.979
3rd Layer	1.13.12	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4CL1	4-coumarate-coa ligase (545 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)	•	0.702
	PAL2	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)	•	0.702
	PAL3	SubName- Full=Phenylalanine ammonia-lyase; (715 aa)	•	0.702
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)	•	0.700
	CCR1	cinnamoyl CoA reductase (EC-1.2.1.44) (278 aa)	•	0.700
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)	•	0.700
	CCR5	cinnamoyl CoA reductase (EC-1.2.1.44) (230 aa)	•	0.700
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)	•	0.700
	SAD	SubName- Full=Cinnamyl alcohol dehydrogenase; (362 aa)	•	0.688
	CHS	SubName- Full=Chalcone synthase (Putative uncharacterized protein);; The primary product of thi [...] (397 aa)	•	0.687

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		544
PLN02246		537	PLN02246, PLN02246, 4-coumarate--CoA ligase	0.0
cd05904		504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	0.0
cd05911		487	cd05911, Firefly_Luc_like, Firefly luciferase of l	0.0
COG0318		534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-158
cd05936		468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-152
PLN02330		546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-145
PLN02574		560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-135
PRK07656		513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-129
pfam00501		412	pfam00501, AMP-binding, AMP-binding enzyme	1e-128
cd05917		347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-127
PRK06187		521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-127
cd05935		430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-118
cd05929		342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-116
cd04433		338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-103
PRK08316		523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-97
PRK08314		546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-96
PRK05605		573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	7e-95
PRK03640		483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	1e-90
cd05934		421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-90
cd12119		517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	4e-90
COG0365		528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	5e-90
PRK06710		563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-89
cd05926		345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-89
cd05903		437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	7e-87
cd05922		350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-85
cd05907		456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-85
cd05912		407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-85
cd05920		483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	7e-85
PRK08315		559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-84
PRK07059		557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-84
PRK12583		558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	3e-83
PRK05677		562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	4e-83
cd05959		506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	5e-83
PRK08974		560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	8e-82
PRK06178		567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-81
PRK06839		496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-79
cd05941		430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	6e-79
cd12118		520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	7e-79
PRK12492		562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-78
PRK07786		542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	7e-77
PRK07470		528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-74
PRK08751		560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-74
COG1022		613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	5e-73
PRK07529		632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-71
cd05972		430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-70
PRK06145		497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	2e-69
PRK06188		524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-68
cd05944		359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-68
cd05919		436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-68
TIGR03205		541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-66
cd05931		547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-65
cd05927		539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-65
PRK08008		517	PRK08008, caiC, putative crotonobetaine/carnitine-	3e-65
PRK07788		549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-64
TIGR01923		436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	7e-62
PRK08276		502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-61
PRK06087		547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-61
cd05971		439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-60
PRK07514		504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	3e-60
cd05945		447	cd05945, DltA, D-alanine:D-alanyl carrier protein	6e-60
COG1021		542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-59
PRK08162		545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-58
PRK13295		547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	5e-58
TIGR03098		517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-56
cd05909		489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-56
cd05932		504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-56
PRK13391		511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-56
PRK12406		509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-55
PRK06155		542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-54
TIGR03208		538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	7e-54
TIGR02262		508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-53
PRK09088		488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	5e-53
TIGR02275		526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-51
cd05958		487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-49
cd05970		537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-49
PLN02860		563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-49
cd05930		445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-49
PRK06018		542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-49
PRK07798		533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-48
PRK04319		570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-48
PRK08633		1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	7e-48
PRK06164		540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-47
cd05906		560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-47
TIGR01733		409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-47
PRK07638		487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-47
cd05974		433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-47
cd05918		447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	4e-47
cd05969		443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-46
cd05908		499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-45
cd05923		495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-45
cd12117		474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-45
cd05967		607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	9e-45
cd12114		476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-44
cd05973		440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-44
cd05968		474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-44
PRK07008		539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-44
cd05928		530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-43
PRK07867		529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-43
PLN02736		651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-43
cd05933		594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-43
cd05966		602	cd05966, ACS, Acetyl-CoA synthetase (also known as	6e-43
PRK13382		537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-41
PRK07787		471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-41
cd05915		509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	9e-41
TIGR02188		625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	9e-41
cd05924		365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-40
PLN03102		579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-40
PRK05852		534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-40
cd05940		444	cd05940, FATP_FACS, Fatty acid transport proteins	1e-37
PRK13390		501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	3e-37
cd05910		455	cd05910, FACL_like_1, Uncharacterized subfamily of	3e-36
COG1020		642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-35
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	3e-35
cd12115		449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	1e-34
PRK06334		539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-34
PRK13388		540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	3e-34
PLN02479		567	PLN02479, PLN02479, acetate-CoA ligase	6e-34
cd12116		438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-33
PRK07768		545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-33
PRK10946		536	PRK10946, entE, enterobactin synthase subunit E; P	8e-33
PRK10524		629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	9e-33
PRK09192		579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-32
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	2e-31
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-31
TIGR02316		628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-29
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-29
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-28
PRK13383		516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	2e-28
PRK09029		458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	3e-28
PRK08279		600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	4e-28
PRK06814		1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	6e-27
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-26
cd05914		448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-26
PRK12467		3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-26
PLN02430		660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	5e-26
PRK05620		576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-25
PRK07769		631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-25
PRK09274		552	PRK09274, PRK09274, peptide synthase; Provisional	3e-25
PLN02614		666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-24
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-24
cd05937		468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-24
PRK06060		705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	4e-24
cd05921		559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	9e-24
PLN02654		666	PLN02654, PLN02654, acetate-CoA ligase	1e-23
PLN02861		660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-23
PLN02387		696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	5e-23
PTZ00216		700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-22
PRK00174		637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-22
PTZ00237		647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	2e-22
cd05939		474	cd05939, hsFATP4_like, Fatty acid transport protei	3e-22
PRK12476		612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	3e-22
PRK12316		5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-22
PRK07445		452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	9e-22
PRK08308		414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-21
cd05943		616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	4e-21
PRK05857		540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-20
PRK07824		358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-19
PRK05850		578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	5e-19
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	6e-19
PRK08043		718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-19
PRK10252		1296	PRK10252, entF, enterobactin synthase subunit F; P	5e-18
PRK03584		655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	6e-18
cd05938		535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	9e-18
PRK12582		624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-17
PRK05691		4334	PRK05691, PRK05691, peptide synthase; Validated	2e-17
PRK05851		525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-16
PRK04813		503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-15
TIGR01734		502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-14
TIGR01217		652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	7e-12
cd05905		556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	5e-11
COG1541		438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	5e-09
TIGR03443		1389	TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh	3e-08
PRK08180		614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-07
PTZ00216		700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-07
PRK04813		503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-07
PLN03052		728	PLN03052, PLN03052, acetate--CoA ligase; Provision	5e-07
PTZ00342		746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	6e-07
PRK08180		614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-06
pfam13193		43	pfam13193, DUF4009, Domain of unknown function (DU	8e-06
TIGR01734		502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-05
PTZ00342		746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	4e-05

>gnl\|CDD\|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase	Back alignment and domain information

 Score = 1143 bits (2960), Expect = 0.0
 Identities = 434/538 (80%), Positives = 487/538 (90%), Gaps = 1/538 (0%)

Query: 3   AKQDHQEFIFRSKLPDIYIPNHLPLHTYCFENISQFADRPCIINGPTGDVYTYADVELTS 62
                +EFIFRSKLPDIYIPNHLPLH YCFE +S+F+DRPC+I+G TG VYTYADVEL S
Sbjct: 1   EASASEEFIFRSKLPDIYIPNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLS 60

Query: 63  RKVAAGLSKLGVQKGDVIMLLLQNCPQFVFAFLGASYIGATSTTANPFYTPPEIAKQAIA 122
           R+VAAGL KLG+++GDV+MLLL NCP+FV AFLGAS  GA +TTANPFYTP EIAKQA A
Sbjct: 61  RRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKA 120

Query: 123 SKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENCLHFSELITQADENEIPAVKINPD 182
           S AK+IITQ+ Y DK++ L+E  G  +VTID PPE CLHFSEL TQADENE+P V+I+PD
Sbjct: 121 SGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSEL-TQADENELPEVEISPD 179

Query: 183 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSL 242
           DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLY H +DVILCVLP+FHIYSL
Sbjct: 180 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSL 239

Query: 243 NSVLLCALRVGAAILIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSS 302
           NSVLLC LRVGAAILIM KF+I  L+EL+Q++KVT+APFVPPIVLA+AKS  V+KYD+SS
Sbjct: 240 NSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSS 299

Query: 303 IRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACG 362
           IR V+SGAAP+GKELEDA RAKLP+A LGQGYGMTEAGPVL+MCLAFAKEPF +KSG+CG
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCG 359

Query: 363 TVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGWLHTGDI 422
           TVVRNAE+KIVDP+TG SLPRNQ GEICIRG QIMKGYLND EAT  TIDK+GWLHTGDI
Sbjct: 360 TVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDI 419

Query: 423 GYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVA 482
           GYIDDDDELFIVDRLKELIK+KGFQVAPAELEA+LI+HP+I+DAAVVPMKDE AGEVPVA
Sbjct: 420 GYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVA 479

Query: 483 FVVRSNGSKITEDEIKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAG 540
           FVVRSNGS+ITEDEIKQ+++KQVVFYKRI++VFF DSIPKAPSGKILRKDLR KLAAG
Sbjct: 480 FVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAAG 537

Length = 537

>gnl\|CDD\|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	Back alignment and domain information

>gnl\|CDD\|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)	Back alignment and domain information

>gnl\|CDD\|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	Back alignment and domain information

>gnl\|CDD\|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>gnl\|CDD\|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like	Back alignment and domain information

>gnl\|CDD\|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|215954 pfam00501, AMP-binding, AMP-binding enzyme	Back alignment and domain information

>gnl\|CDD\|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase	Back alignment and domain information

>gnl\|CDD\|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins	Back alignment and domain information

>gnl\|CDD\|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I	Back alignment and domain information

>gnl\|CDD\|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	Back alignment and domain information

>gnl\|CDD\|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis	Back alignment and domain information

>gnl\|CDD\|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)	Back alignment and domain information

>gnl\|CDD\|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	Back alignment and domain information

>gnl\|CDD\|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)	Back alignment and domain information

>gnl\|CDD\|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>gnl\|CDD\|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated	Back alignment and domain information

>gnl\|CDD\|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)	Back alignment and domain information

>gnl\|CDD\|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)	Back alignment and domain information

>gnl\|CDD\|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis	Back alignment and domain information

>gnl\|CDD\|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated	Back alignment and domain information

>gnl\|CDD\|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	Back alignment and domain information

>gnl\|CDD\|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes	Back alignment and domain information

>gnl\|CDD\|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA	Back alignment and domain information

>gnl\|CDD\|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	Back alignment and domain information

>gnl\|CDD\|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)	Back alignment and domain information

>gnl\|CDD\|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated	Back alignment and domain information

>gnl\|CDD\|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)	Back alignment and domain information

>gnl\|CDD\|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>gnl\|CDD\|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated	Back alignment and domain information

>gnl\|CDD\|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)	Back alignment and domain information

>gnl\|CDD\|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase	Back alignment and domain information

>gnl\|CDD\|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family	Back alignment and domain information

>gnl\|CDD\|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>gnl\|CDD\|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	Back alignment and domain information

>gnl\|CDD\|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like	Back alignment and domain information

>gnl\|CDD\|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	Back alignment and domain information

>gnl\|CDD\|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents	Back alignment and domain information

>gnl\|CDD\|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain	Back alignment and domain information

>gnl\|CDD\|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)	Back alignment and domain information

>gnl\|CDD\|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)	Back alignment and domain information

>gnl\|CDD\|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)	Back alignment and domain information

>gnl\|CDD\|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	Back alignment and domain information

>gnl\|CDD\|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)	Back alignment and domain information

>gnl\|CDD\|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	Back alignment and domain information

>gnl\|CDD\|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes	Back alignment and domain information

>gnl\|CDD\|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	Back alignment and domain information

>gnl\|CDD\|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)	Back alignment and domain information

>gnl\|CDD\|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)	Back alignment and domain information

>gnl\|CDD\|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)	Back alignment and domain information

>gnl\|CDD\|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	Back alignment and domain information

>gnl\|CDD\|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	Back alignment and domain information

>gnl\|CDD\|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional	Back alignment and domain information

>gnl\|CDD\|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes	Back alignment and domain information

>gnl\|CDD\|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae	Back alignment and domain information

>gnl\|CDD\|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>gnl\|CDD\|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|178097 PLN02479, PLN02479, acetate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase	Back alignment and domain information

>gnl\|CDD\|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional	Back alignment and domain information

>gnl\|CDD\|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|131369 TIGR02316, propion_prpE, propionate--CoA ligase	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	Back alignment and domain information

>gnl\|CDD\|237108 PRK12467, PRK12467, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>gnl\|CDD\|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>gnl\|CDD\|236443 PRK09274, PRK09274, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi	Back alignment and domain information

>gnl\|CDD\|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)	Back alignment and domain information

>gnl\|CDD\|215353 PLN02654, PLN02654, acetate-CoA ligase	Back alignment and domain information

>gnl\|CDD\|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>gnl\|CDD\|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>gnl\|CDD\|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins	Back alignment and domain information

>gnl\|CDD\|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|237054 PRK12316, PRK12316, peptide synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>gnl\|CDD\|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)	Back alignment and domain information

>gnl\|CDD\|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>gnl\|CDD\|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional	Back alignment and domain information

>gnl\|CDD\|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins	Back alignment and domain information

>gnl\|CDD\|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|235564 PRK05691, PRK05691, peptide synthase; Validated	Back alignment and domain information

>gnl\|CDD\|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>gnl\|CDD\|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>gnl\|CDD\|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	Back alignment and domain information

>gnl\|CDD\|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)	Back alignment and domain information

>gnl\|CDD\|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>gnl\|CDD\|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>gnl\|CDD\|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>gnl\|CDD\|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)	Back alignment and domain information

>gnl\|CDD\|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>gnl\|CDD\|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		544
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02246		537	4-coumarate--CoA ligase	100.0
PLN02574		560	4-coumarate--CoA ligase-like	100.0
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07788		549	acyl-CoA synthetase; Validated	100.0
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02330		546	4-coumarate--CoA ligase-like 1	100.0
PLN02654		666	acetate-CoA ligase	100.0
PTZ00237		647	acetyl-CoA synthetase; Provisional	100.0
PLN02860		563	o-succinylbenzoate-CoA ligase	100.0
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK07529		632	AMP-binding domain protein; Validated	100.0
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK00174		637	acetyl-CoA synthetase; Provisional	100.0
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02736		651	long-chain acyl-CoA synthetase	100.0
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06839		496	acyl-CoA synthetase; Validated	100.0
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319		570	acetyl-CoA synthetase; Provisional	100.0
PRK13382		537	acyl-CoA synthetase; Provisional	100.0
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852		534	acyl-CoA synthetase; Validated	100.0
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857		540	acyl-CoA synthetase; Validated	100.0
PRK08316		523	acyl-CoA synthetase; Validated	100.0
PRK09274		552	peptide synthase; Provisional	100.0
PRK08315		559	AMP-binding domain protein; Validated	100.0
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07514		504	malonyl-CoA synthase; Validated	100.0
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK07470		528	acyl-CoA synthetase; Validated	100.0
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07638		487	acyl-CoA synthetase; Validated	100.0
PRK12583		558	acyl-CoA synthetase; Provisional	100.0
PLN02614		666	long-chain acyl-CoA synthetase	100.0
PRK06060		705	acyl-CoA synthetase; Validated	100.0
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06145		497	acyl-CoA synthetase; Validated	100.0
PLN03102		579	acyl-activating enzyme; Provisional	100.0
PRK07867		529	acyl-CoA synthetase; Validated	100.0
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN03052		728	acetate--CoA ligase; Provisional	100.0
PRK06188		524	acyl-CoA synthetase; Validated	100.0
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK06178		567	acyl-CoA synthetase; Validated	100.0
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088		488	acyl-CoA synthetase; Validated	100.0
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PTZ00342		746	acyl-CoA synthetase; Provisional	100.0
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10946		536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PLN02861		660	long-chain-fatty-acid-CoA ligase	100.0
PRK12467		3956	peptide synthase; Provisional	100.0
PRK13388		540	acyl-CoA synthetase; Provisional	100.0
PRK06164		540	acyl-CoA synthetase; Validated	100.0
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06018		542	putative acyl-CoA synthetase; Provisional	100.0
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	100.0
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13390		501	acyl-CoA synthetase; Provisional	100.0
PRK08180		614	feruloyl-CoA synthase; Reviewed	100.0
PRK13383		516	acyl-CoA synthetase; Provisional	100.0
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK12316		5163	peptide synthase; Provisional	100.0
PRK12467		3956	peptide synthase; Provisional	100.0
PRK12316		5163	peptide synthase; Provisional	100.0
PLN02479		567	acetate-CoA ligase	100.0
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PTZ00216		700	acyl-CoA synthetase; Provisional	100.0
PRK07787		471	acyl-CoA synthetase; Validated	100.0
PLN02430		660	long-chain-fatty-acid-CoA ligase	100.0
PRK07798		533	acyl-CoA synthetase; Validated	100.0
PRK13391		511	acyl-CoA synthetase; Provisional	100.0
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08162		545	acyl-CoA synthetase; Validated	100.0
PRK07868		994	acyl-CoA synthetase; Validated	100.0
PRK05691		4334	peptide synthase; Validated	100.0
PRK09192		579	acyl-CoA synthetase; Validated	100.0
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12582		624	acyl-CoA synthetase; Provisional	100.0
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05691		4334	peptide synthase; Validated	100.0
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK05850		578	acyl-CoA synthetase; Validated	100.0
PLN03051		499	acyl-activating enzyme; Provisional	100.0
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08308		414	acyl-CoA synthetase; Validated	100.0
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PTZ00297		1452	pantothenate kinase; Provisional	100.0
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
KOG3628		1363	consensus Predicted AMP-binding protein [General f	100.0
KOG1178		1032	consensus Non-ribosomal peptide synthetase/alpha-a	100.0
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.97
TIGR03089		227	conserved hypothetical protein TIGR03089. This pro	99.95
PRK09188		365	serine/threonine protein kinase; Provisional	99.85
KOG3628		1363	consensus Predicted AMP-binding protein [General f	99.85
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.8
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.4
PF13193		73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.3
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.76
PLN02249		597	indole-3-acetic acid-amido synthetase	98.31
PLN02620		612	indole-3-acetic acid-amido synthetase	97.88
PLN02247		606	indole-3-acetic acid-amido synthetase	97.88
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.55
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.8
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	90.56
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	89.57

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.9e-80  Score=615.61  Aligned_cols=500  Identities=42%  Similarity=0.696  Sum_probs=439.9

Q ss_pred             HHhhhccCCCc-cEEEeCCC-CceeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEcCCCccHHHHHHHHHhhCCeEee
Q 009077           31 CFENISQFADR-PCIINGPT-GDVYTYADVELTSRKVAAGLSKLG--VQKGDVIMLLLQNCPQFVFAFLGASYIGATSTT  106 (544)
Q Consensus        31 l~~~a~~~p~~-~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~g--~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~  106 (544)
                      +.+.+..++++ +.+++... ++.+||+|+.+++.++|..|.++|  +++||+|++++||+++++.+++||+.+|+++.+
T Consensus        22 l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~  101 (537)
T KOG1176|consen   22 LGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNP  101 (537)
T ss_pred             ccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccc
Confidence            34444444444 66665532 599999999999999999999876  899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhcCcEEEEeCCCCCCC---------cc-HHHHHhhccCCCCCc
Q 009077          107 ANPFYTPPEIAKQAIASKAKIIITQAVYNDKVRDLSEHHGARIVTIDPPPENC---------LH-FSELITQADENEIPA  176 (544)
Q Consensus       107 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~-~~~~~~~~~~~~~~~  176 (544)
                      ++|.++..++.+.++.++++++|++....+.+.+.......+++++... ...         .. ++.+....... . .
T Consensus       102 ~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  178 (537)
T KOG1176|consen  102 LNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGD-EGVISISDLVEDLDAFEDLMPEGLPD-G-I  178 (537)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecc-cCccccccccccccchhhccccCCCc-c-c
Confidence            9999999999999999999999999999999988776655566555432 111         11 22221111111 1 4


Q ss_pred             cCCCCCCEEEEecCCCCCCCCchhhhchHHHHHHHHHhhhcCCCCccCCCCeEEEEecchhhHHhhHHHHHHHHHhCcEE
Q 009077          177 VKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYLHKEDVILCVLPLFHIYSLNSVLLCALRVGAAI  256 (544)
Q Consensus       177 ~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~  256 (544)
                      .....++++.++|||||||.||+|.+||+++..+.......    ..+...++.++.+|++|.+|+...+.+.+..|+++
T Consensus       179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~----~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~i  254 (537)
T KOG1176|consen  179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIG----WELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTI  254 (537)
T ss_pred             ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhc----ccCCCCceEEEechHHHHhHHHHHHHHHHhCCceE
Confidence            55677999999999999999999999999998886655442    23566899999999999999987777788888888


Q ss_pred             EEccCcCHHHHHHHHHhccceeccCcHHHHHHHHhcCCCCCCCCCCceEEEEecccCCHHHHHHHHHHCCCCceeccccc
Q 009077          257 LIMQKFDIVKLMELVQKYKVTVAPFVPPIVLAVAKSGDVDKYDMSSIRTVMSGAAPMGKELEDAVRAKLPHAKLGQGYGM  336 (544)
Q Consensus       257 v~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~~~~~G~~l~~~~~~~~~~~~~~~~v~~~yG~  336 (544)
                      +....+++..+++.+++|++|++.++|+++..|++.+......+++++.+.+||++++++..+++++.+|...+.+.||+
T Consensus       255 i~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGm  334 (537)
T KOG1176|consen  255 ICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGM  334 (537)
T ss_pred             EECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeecc
Confidence            88888999999999999999999999999999999987777889999999999999999999999999977999999999


Q ss_pred             cccCccccccccccCCCCccCCCeeeeccCCceEEEEcCCCCCCCCCCCceeEEEecCcccccccCChhhhhhhcCCCCc
Q 009077          337 TEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGISLPRNQAGEICIRGAQIMKGYLNDREATETTIDKEGW  416 (544)
Q Consensus       337 tE~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~i~d~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~  416 (544)
                      ||++++++.+...   +. .+++++|++++++...+.+ +.+..++.++.||||++|+.+..||+++++.|.+.++.+||
T Consensus       335 TE~~~~~~~~~~~---~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW  409 (537)
T KOG1176|consen  335 TEAGGLITSNDWG---PE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGW  409 (537)
T ss_pred             ccccCceeecCCC---cc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCc
Confidence            9999777765221   11 5789999999988887777 78999999999999999999999999999999999988899


Q ss_pred             eecCceEEEcCCCcEEEEccccceEEeCceeeCcHHHHHHHHcCCCcceeEEEeeeCCCCCceEEEEEEecCCCCCCHHH
Q 009077          417 LHTGDIGYIDDDDELFIVDRLKELIKFKGFQVAPAELEAMLIAHPNISDAAVVPMKDEAAGEVPVAFVVRSNGSKITEDE  496 (544)
Q Consensus       417 ~~TgDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  496 (544)
                      |+|||+|++|+||++++.+|+.|+||.+|++|+|.|||++|.+||.|.|++|++++|+..|+.++|+|+..++..+++++
T Consensus       410 ~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~d  489 (537)
T KOG1176|consen  410 FHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKD  489 (537)
T ss_pred             cccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCcccEEEEecCCCCCCCcccchHHHHhHHhhccc
Q 009077          497 IKQYISKQVVFYKRINRVFFTDSIPKAPSGKILRKDLRTKLAAGDL  542 (544)
Q Consensus       497 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~~  542 (544)
                      +.+++++++++|++|..++++++||+|++||++|+.|++++.+...
T Consensus       490 i~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~~  535 (537)
T KOG1176|consen  490 IIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLGS  535 (537)
T ss_pred             HHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999987654

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]	Back alignment and domain information

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03089 conserved hypothetical protein TIGR03089	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		544
3a9u_A		536	Crystal Structures And Enzymatic Mechanisms Of A Po		0.0
3tsy_A		979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		0.0
1ba3_A		550	Firefly Luciferase In Complex With Bromoform Length		6e-75
3iep_A		551	Firefly Luciferase Apo Structure (P41 Form) Length		6e-75
4g36_A		555	Photinus Pyralis Luciferase In The Adenylate-Formin		8e-75
4g37_A		555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-73
3qya_A		582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-72
2d1q_A		548	Crystal Structure Of The Thermostable Japanese Fire		8e-72
2d1s_A		548	Crystal Structure Of The Thermostable Japanese Fire		1e-71
2d1t_A		548	Crystal Structure Of The Thermostable Japanese Fire		2e-71
3r44_A		517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-55
3g7s_A		549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-54
1ult_A		541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-45
4fuq_A		503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-42
3ivr_A		509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-39
1mdb_A		539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		4e-36
4fut_A		503	Crystal Structure Of Atp Bound Matb From Rhodopseud		9e-35
3ipl_A		501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-33
1md9_A		539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-33
3t5b_A		396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-33
4gxq_A		506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		5e-33
4gxr_A		503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		8e-33
2v7b_A		529	Crystal Structures Of A Benzoate Coa Ligase From Bu		3e-32
3etc_A		580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-28
2qvx_X		504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		7e-28
3nyq_A		505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-27
1ry2_A		663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		2e-27
2p2b_A		652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-27
2qvz_X		504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-27
2p20_A		652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		4e-27
3cw8_X		504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		4e-27
2p2m_A		652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		6e-27
2p2q_A		652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-27
2p2f_A		652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		7e-27
1pg3_A		652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		7e-27
1t5d_X		504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-26
3o82_A		544	Structure Of Base N-Terminal Domain From Acinetobac		1e-26
3dlp_X		504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-26
2p2j_A		652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		4e-26
3b7w_A		570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		8e-26
2wd9_A		569	Crystal Structure Of Human Acyl-coa Synthetase Medi		8e-26
3rg2_A		617	Structure Of A Two-Domain Nrps Fusion Protein Conta		1e-25
1t5h_X		504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-25
2vsq_A		1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		2e-24
3kxw_A		590	The Crystal Structure Of Fatty Acid Amp Ligase From		2e-22
3pbk_A		583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-21
3fcc_A		512	Crystal Structure Of Dlta Protein In Complex With A		1e-20
3dhv_A		512	Crystal Structure Of Dlta Protein In Complex With D		1e-20
4gr5_A		570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-20
1amu_A		563	Phenylalanine Activating Domain Of Gramicidin Synth		1e-19
3l8c_A		521	Structure Of Probable D-Alanine--Poly(Phosphoribito		1e-19
3e7w_A		511	Crystal Structure Of Dlta: Implications For The Rea		3e-13
4dg8_A		620	Structure Of Pa1221, An Nrps Protein Containing Ade		2e-10
3vnq_A		544	Co-crystal Structure Of Nrps Adenylation Protein Cy		3e-10
3t5a_A		480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		1e-08
3e53_A		480	Crystal Structure Of N-Terminal Domain Of A Fatty A		2e-08
4gr4_A		469	Crystal Structure Of Slgn1deltaasub Length = 469		4e-07

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536