Citrus Sinensis ID: 009079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQLN
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHcccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEccccccccccHHHHcccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEccccccccccHHHcccccHHHHHHHcccccccccccccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscASLQTLILSRnkikdwpdAILTSLsslsclkldnnplrqvpsdgfkdipmlqiLDLSyniaslpenppfsslphLQELYLRRMQLREAPTDILRLQQLRILDLSQnslqsipeVTYIFVMLQKKSIntelvdknqqfipqln
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINtelvdknqqfipqln
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIltslsslsclklDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTdilrlqqlrildlSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQLN
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL***********LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN*PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELV***********
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE**********LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQL*
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQLN
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFI**L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	544	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.924	0.834	0.340	2e-61
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.928	0.834	0.335	9e-60
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.928	0.834	0.344	4e-59
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.926	0.837	0.336	5e-56
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.926	0.837	0.334	2e-55
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.926	0.837	0.334	6e-55
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.928	0.840	0.323	1e-54
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.926	0.837	0.327	2e-50
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.694	0.655	0.300	6e-36
Q5F4C4	529	Leucine-rich repeat prote	no	no	0.617	0.635	0.308	4e-35

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 291/537 (54%), Gaps = 34/537 (6%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Query: 400 SSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                S+  +    NKI       L +L  L+ L + NN L  +P +  + +  LQ+++L
Sbjct: 446 VELKDSVCDVNFGFNKISSV-SLELCTLHKLTHLDIRNNVLTSLPEE-MEALTRLQVINL 503

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
           S+N   +  +  +  L  L+ + L   Q+    P  + +++QL  LDL  N L  +P
Sbjct: 504 SFNRFKVFPSVLYRMLA-LETILLSNNQVGSIDPLQLKKMEQLGTLDLQNNDLLQVP 559

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  231 bits (590), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 180/537 (33%), Positives = 275/537 (51%), Gaps = 32/537 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ L + NN L  +P +  + +  LQ + LS
Sbjct: 449 EMKDSVYDVNLGFNKISSI-SLNLCMLLKLTHLDMRNNALASLPPE-MEALTRLQSIILS 506

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
           +N     P+     ++P+L+ + +   Q+    P  + ++ +L  LDL  N L  IP
Sbjct: 507 FNRFKHFPD--VLYTIPNLETILISSNQIGSIDPIQLKKMTKLSTLDLQNNDLLQIP 561

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  229 bits (585), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 185/537 (34%), Positives = 272/537 (50%), Gaps = 32/537 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL-------PENEDSEAST- 343
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+        E+E+S A+  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T      + T   VT K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ + + NN L  +PS+  + +  LQ + LS
Sbjct: 449 EMKDSVCDVNLGFNKISSI-SLNLCMLLKLTHIDMRNNVLTSLPSE-MEAMTRLQSVILS 506

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
           +N     P+      +P L+ + +   Q+    PT ++++ +L  LDL  N L  IP
Sbjct: 507 FNRFKHFPD--VLYRIPTLETILISSNQIGSIDPTQLIKMTKLSTLDLQNNDLLQIP 561

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  219 bits (558), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 282/535 (52%), Gaps = 31/535 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-VESLVRLQTINLSFN 505

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
               LPE      +  L+ + +   Q+    P  +  ++ L  LDL  N L  IP
Sbjct: 506 RFKMLPE--VLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIP 558

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  217 bits (553), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 179/535 (33%), Positives = 281/535 (52%), Gaps = 31/535 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVDLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
               LPE      +  L+ + +   Q+    P  +  ++ L  LDL  N L  IP
Sbjct: 506 RFKMLPE--VLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIP 558

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 179/535 (33%), Positives = 279/535 (52%), Gaps = 31/535 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCMLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
               LPE      +  L+ + +   Q+    P  +  ++ L  LDL  N L  IP
Sbjct: 506 RFKMLPE--VLYRIFTLETILISNNQVGSVDPQKMKMMENLTTLDLQNNDLLQIP 558

Macaca fascicularis (taxid: 9541)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 173/535 (32%), Positives = 275/535 (51%), Gaps = 30/535 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLP-PAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P  +   
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVPHRIVDL 446

Query: 403 A-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             SL  + L  NK+   P A    L  L  + L NN L  +P +  + +  L+ + LS+N
Sbjct: 447 KDSLADINLGFNKLTTIP-ADFCHLKQLMHIDLRNNLLISLPME-LEGLIKLRSVILSFN 504

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIP 514
              S PE      +P L+ + +   Q+       ++ L +L  LDLS N +  +P
Sbjct: 505 RFKSFPE--VLYRIPSLETILISSNQVGGIDAVQMKTLSRLSTLDLSNNDIMQVP 557

Danio rerio (taxid: 7955)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  201 bits (510), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 175/535 (32%), Positives = 275/535 (51%), Gaps = 31/535 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +   I LS NK+  +    L  L  L+ L L NN L  +P +    +  LQ ++LS+N
Sbjct: 448 KEMVLDINLSFNKLS-FISHELCLLQKLTFLDLRNNFLSSLPEE-MSSLTKLQTINLSFN 505

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP 514
                PE      +  L+ + +   Q+    P  +  ++ L  LDL  N L  IP
Sbjct: 506 RFKVFPE--VLYRISTLEAVLISNNQVGSVDPQKMKLMENLNTLDLQNNDLLQIP 558

Mus musculus (taxid: 10090)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 454 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 477

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +  LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 478 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFE-LALCS 536

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 537 KLSIMSIENCPLSHLP 552

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 192/392 (48%), Gaps = 56/392 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P+ VY+                L  L L  N I  +++D++ L  LT+L
Sbjct: 174 LDLRHNKLREIPSVVYR-------------LTSLATLYLRFNRITTVEKDIKTLSKLTML 220

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P+EIGS T +   D   N+L +LP ++
Sbjct: 221 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETI 280

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P+ LA CS++ +L++E N ++ L   L++S   LT L  ++
Sbjct: 281 GNLSSLSRLGLRYNRLSAIPKSLAKCSELDELNLENNNISTLPEGLLSSLVKLTSLTLAR 340

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 341 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 398

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  L VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 399 GTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 458

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 459 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 482

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELS 400
           L+ +P  I     +T L L  N +  LP E+ 
Sbjct: 483 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIG 514

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
255575336	571	leucine-rich repeat-containing protein,	0.944	0.900	0.755	0.0
224114980	580	predicted protein [Populus trichocarpa]	0.939	0.881	0.769	0.0
449431828	583	PREDICTED: leucine-rich repeat-containin	0.946	0.883	0.751	0.0
359493861	584	PREDICTED: leucine-rich repeat-containin	0.946	0.881	0.767	0.0
356549743	583	PREDICTED: leucine-rich repeat-containin	0.871	0.813	0.752	0.0
225461397	588	PREDICTED: leucine-rich repeat-containin	0.946	0.875	0.753	0.0
356544024	586	PREDICTED: leucine-rich repeat-containin	0.944	0.877	0.763	0.0
297830120	584	leucine-rich repeat family protein [Arab	0.946	0.881	0.722	0.0
7021726	562	unknown protein [Arabidopsis thaliana]	0.946	0.916	0.720	0.0
30683597	584	leucine-rich repeat-containing protein [	0.946	0.881	0.720	0.0

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/516 (75%), Positives = 450/516 (87%), Gaps = 2/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQTLILS+NKI++WP
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQTLILSKNKIQEWP 419

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SLS+LSCLKLDNNPLRQ+P DGF+ + MLQILDLS N AS+ E PPFS LPHLQE
Sbjct: 420 GAILKSLSNLSCLKLDNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQE 479

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYLR +QL E P+DIL L QLRILDLS+NSLQSIPE
Sbjct: 480 LYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPE 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/516 (76%), Positives = 446/516 (86%), Gaps = 5/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C     LILSRNKI DWP
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLCC----LILSRNKISDWP 416

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNN L Q+PSDGF+ +PMLQILDLS N ASL  +P FSSLPHL+E
Sbjct: 417 CAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKE 476

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYLR++QLRE P+DIL LQQL+IL+LSQNSL SIPE
Sbjct: 477 LYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPE 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/516 (75%), Positives = 446/516 (86%), Gaps = 1/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL +L +L+CLKLDNNPL+Q+PSDGF+ +  LQ+LDLS NIA LPE+P FSSLP LQE
Sbjct: 421 GAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYLRRM+L E P+ IL L+ +RILDLSQNS+Q +PE
Sbjct: 481 LYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPE 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/516 (76%), Positives = 456/516 (88%), Gaps = 1/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI++WP
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
             IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP LQE
Sbjct: 421 GVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPE
Sbjct: 481 LYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPE 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/525 (75%), Positives = 457/525 (87%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IKDWP 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPG 420

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480
           +IL SLSSLSCLKLDNNPLRQ+PSDGF+ +P LQILDLS N ASL + P FSSLP+LQEL
Sbjct: 421 SILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQEL 480

Query: 481 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQK 525
           YLRRM+L E P+DI+ L QLRILDLSQNSLQSIP        LQ+
Sbjct: 481 YLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQE 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/520 (75%), Positives = 453/520 (87%), Gaps = 5/520 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKI 420

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           ++WP  IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP
Sbjct: 421 QEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLP 480

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
            LQELYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPE
Sbjct: 481 QLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPE 520

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/515 (76%), Positives = 453/515 (87%), Gaps = 1/515 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IK+WP
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            +IL SLSSLSCLKLDNNPL+Q+P DGF+ +P LQILDLS N ASL + P FSSLP+LQE
Sbjct: 421 GSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           LYLRRM+L E P+DI+ LQQLRILDLSQNSLQSIP
Sbjct: 481 LYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIP 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/516 (72%), Positives = 437/516 (84%), Gaps = 1/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  L+ILDLS N  S  E+P F  LP LQE
Sbjct: 421 GAILKSLPNLVCLKLDNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPK 516

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7021726|gb|AAF35407.1| unknown protein [Arabidopsis thaliana]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/516 (72%), Positives = 435/516 (84%), Gaps = 1/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPK 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683597|ref|NP_188160.2| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|21703129|gb|AAM74505.1| AT3g15410/MJK13_7 [Arabidopsis thaliana] gi|24111377|gb|AAN46812.1| At3g15410/MJK13_7 [Arabidopsis thaliana] gi|332642149|gb|AEE75670.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/516 (72%), Positives = 435/516 (84%), Gaps = 1/516 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPK 516

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.878	0.795	0.289	9.8e-48
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.832	0.752	0.3	3e-46
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.674	0.630	0.303	7.2e-36
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.735	0.715	0.286	2.2e-35
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.735	0.715	0.286	2.2e-35
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.738	0.788	0.303	5.1e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.665	0.645	0.301	1.2e-34
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.648	0.505	0.296	4.6e-34
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.648	0.505	0.296	4.6e-34
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.665	0.621	0.299	8.5e-34

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 147/507 (28%), Positives = 240/507 (47%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P  +   
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVPHRIVDL 446

Query:   403 A-SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               SL  + L  NK+   P A              NN L  +P +  + +  L+ + LS+N
Sbjct:   447 KDSLADINLGFNKLTTIP-ADFCHLKQLMHIDLRNNLLISLPME-LEGLIKLRSVILSFN 504

Query:   462 -IASLPENPPFSSLPHLQELYLRRMQL 487
                S PE      +P L+ + +   Q+
Sbjct:   505 RFKSFPE--VLYRIPSLETILISSNQV 529

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 144/480 (30%), Positives = 234/480 (48%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 AT--RLSV----TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              +  R+++    T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct:   388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query:   403 ASLQTLI-LSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +   I LS NK+      +             NN L  +P +    +  LQ ++LS+N
Sbjct:   448 KEMVLDINLSFNKLSFISHELCLLQKLTFLDLR-NNFLSSLPEE-MSSLTKLQTINLSFN 505

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 117/386 (30%), Positives = 190/386 (49%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQTLILSRNKIKDWPDAI 422
              EL+ C+ L  + +    +   P  I
Sbjct:   535 FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 383 (139.9 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 128/447 (28%), Positives = 207/447 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDLSYNIASLPENPPFSSLP 475
             ++ + Q L+    I S+ EN P S +P
Sbjct:   509 ELALCQSLE----IMSI-ENSPLSQIP 530

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 383 (139.9 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 128/447 (28%), Positives = 207/447 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDLSYNIASLPENPPFSSLP 475
             ++ + Q L+    I S+ EN P S +P
Sbjct:   509 ELALCQSLE----IMSI-ENSPLSQIP 530

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 128/422 (30%), Positives = 190/422 (45%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA--IGELHMLKSLDVSFNSIMKIPDEI 110
             A N I  +  ++ +L  L  L +S+NKL   P    IG L  L  LD+S N +  +P EI
Sbjct:    68 AKNRINYIPPEIGSLATLKQLFLSNNKLFYTPITPNIGALKNLTRLDLSSNQLDDLPVEI 127

Query:   111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
              +  AL   D S NQL+  P   G+  NL  F  S N + SLP +++   K+ +L+V  N
Sbjct:   128 SNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKSLPSEISGWVKLEELNVSNN 187

Query:   171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
             +L  L N  I    +L+ L    N L  +PE + S+  L  LDL  N  L     +S   
Sbjct:   188 QLAFLPNQ-ICLLGLLSTLNVGFNKLQQLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLR 246

Query:   231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSN-QLKEYCVE-ACQXXXXXXXXXXXXXX 288
              L    + N  ++ LP  LG LS+L  LD+  N QLKE   + A                
Sbjct:   247 QLKILSIRNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR 306

Query:   289 XXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP-ALLKYLRSRLPENEDSEASTTKED 347
               P E+G +  L+ L L  N L     ++ N P+    L  L+  L  N    A     +
Sbjct:   307 IVPREVGNLINLQTLDLRQNKL-----TIDNIPSEIGKLVNLKKLLLSNNLLIA--LPPE 359

Query:   348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
             + +M        KE       L AIP+EI E   +TK++LS N +  +P    + + LQ 
Sbjct:   360 IASMKAL-----KEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   408 LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
               L  N+I + P  +             +N L ++P + F D+  L ILD+ +N  ++P 
Sbjct:   415 CDLKSNEIAELPTTLDGLKSCTKIDLS-HNMLTELPWE-FGDLIGLTILDVGHNPLTIPP 472

Query:   468 NP 469
             NP
Sbjct:   473 NP 474

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 115/381 (30%), Positives = 185/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   519 CSKLSIMSIENCPLSHLPPQI 539

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 8.5e-34, P = 8.5e-34
 Identities = 114/381 (29%), Positives = 186/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D+RNLP L+ L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +L+      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 484

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   485 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   540 CSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CRC8	LRC40_MOUSE	No assigned EC number	0.3271	0.9264	0.8372	yes	no
Q9H9A6	LRC40_HUMAN	No assigned EC number	0.3345	0.9264	0.8372	yes	no
Q5M8G4	LRC40_XENTR	No assigned EC number	0.3445	0.9283	0.8347	yes	no
Q5ZLN0	LRC40_CHICK	No assigned EC number	0.3407	0.9246	0.8341	yes	no
Q5RFE9	LRC40_PONAB	No assigned EC number	0.3364	0.9264	0.8372	yes	no
Q7SXW3	LRC40_DANRE	No assigned EC number	0.3233	0.9283	0.8402	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	544
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-15
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-11
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-09
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	1e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (297), Expect = 7e-28
 Identities = 144/465 (30%), Positives = 216/465 (46%), Gaps = 32/465 (6%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM-GN 239
              L  L   +N L+G +P +I SL +LI LDL  N +   IP  +    +L   ++  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVE--ACQLRLSVLDLSNNSLSG-LPPEIGK 296
           N    +P  L  L +L  L L SN+      +       L+VLDLS N+L+G +P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMA 352
              L KL+L  N L         G  P  L   RS    RL +N  S       +L +  
Sbjct: 379 SGNLFKLILFSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSG------ELPSEF 424

Query: 353 TRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           T+L +    L +   NL   I S  W+   +  L L+RN      P+      L+ L LS
Sbjct: 425 TKLPLVYF-LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           RN+        L SLS L  LKL  N L     D       L  LDLS+N  S      F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 472 SSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIP 514
           S +P L +L L + QL  E P ++  ++ L  +++S N L  S+P
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 131/467 (28%), Positives = 201/467 (43%), Gaps = 59/467 (12%)

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
           LP +  +N+S+N+LS                        IPD+I + ++ +++   SN  
Sbjct: 92  LPYIQTINLSNNQLS----------------------GPIPDDIFTTSSSLRYLNLSNNN 129

Query: 127 KELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
                  G   NL     SNN ++  +P D+   S +  LD+ GN   VL   +  S T 
Sbjct: 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN---VLVGKIPNSLTN 186

Query: 186 LTEL----IASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
           LT L    +AS  L+  +P  +G +  L  + L  N +   IP  I G  SL    +  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 241 ALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE-IGK 296
            L+  +P+ LG L  L  L L+ N+L      +     +L  LDLS+NSLSG  PE + +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 297 MTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRL----PENEDSEASTTKEDLITM 351
           +  L  L L  N     +  +L + P   +L+   ++     P+N     + T  DL T 
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLIL 410
                      +L G     IP  +  +G + KL L  NS++ E+P  L +C SL+ + L
Sbjct: 367 -----------NLTG----EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPP 470
             N       +  T L  +  L + NN L+   +    D+P LQ+L L+ N       P 
Sbjct: 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN-KFFGGLPD 470

Query: 471 FSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQS-IPE 515
                 L+ L L R Q   A P  +  L +L  L LS+N L   IP+
Sbjct: 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 6e-19
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L +A      G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 80.0 bits (197), Expect = 4e-16
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 78.9 bits (194), Expect = 1e-15
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.7 bits (175), Expect = 5e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
           +ALP  L     L TL+   N L      +    L VLD+S N ++ LP  +    T+  
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVLPETLPP--TITT 371

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
           L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 372 LDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 51/247 (20%)

Query: 310 LRTLRSSLVNGPTPALLKYLR-SRLPENEDSEAST---TKEDLITMATRLSVTSKELSLE 365
           ++ +R  L N  T   LK L  + +P     + +T      +L ++   L    K L   
Sbjct: 169 VQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYAN 228

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI--- 422
              L++IP+ + +   I +++LS N I ELP  L S  +LQ+L L  NKI   P+ +   
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEE 284

Query: 423 ----------LTSL-----SSLSCLKLDNNPLRQVPSD---GFKDI-------------- 450
                     + +L     S ++ L + +N L  +P     G K +              
Sbjct: 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL 344

Query: 451 -PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
            P LQ+LD+S N I  LPE  P    P +  L + R  L   P ++     L+I+  S+N
Sbjct: 345 PPELQVLDVSKNQITVLPETLP----PTITTLDVSRNALTNLPENL--PAALQIMQASRN 398

Query: 509 SLQSIPE 515
           +L  +PE
Sbjct: 399 NLVRLPE 405

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 8e-09
 Identities = 92/365 (25%), Positives = 138/365 (37%), Gaps = 43/365 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N                            
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL------------------------ 188

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         L L G  +S +P EI     + +LDLS NSI EL   LS+  +L  
Sbjct: 189 ------------NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS NK++D P+  + +LS+L  L L NN +  + S     +  L+ LDLS N  S   
Sbjct: 237 LELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA- 292

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKS 527
             P  +L  L    L  + L     ++     L   ++  N   S PE   I   L    
Sbjct: 293 -LPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLW 351

Query: 528 INTEL 532
                
Sbjct: 352 TLDNA 356

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 21/242 (8%)

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
           TEL      L  +P  I    ++  L L  N + S+P ++ G  ++   Y  +N L+++P
Sbjct: 181 TELRLKILGLTTIPACIPE--QITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIP 236

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           A L     +  ++L  N++ E   E     L  LDL +N +S LP  + +   LR L + 
Sbjct: 237 ATLP--DTIQEMELSINRITEL-PERLPSALQSLDLFHNKISCLPENLPE--ELRYLSVY 291

Query: 307 GNPLRTLRSSLVNGPTPAL-----LKYLRSRLPEN-EDSEASTTKEDLITMATRLSVTSK 360
            N +RTL + L +G T        L  L   LP   +  EA      L ++   L    +
Sbjct: 292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA--LTSLPASLPPELQ 349

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L +    ++ +P  +     IT LD+SRN++  LP  L   A+LQ +  SRN +   P+
Sbjct: 350 VLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE 405

Query: 421 AI 422
           ++
Sbjct: 406 SL 407

Length = 754

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +L++L LS N++   PD     L +L  L L  N L  +  + F  +P L+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +  LDLS N +  +P        +L+ L LS N +        + L SL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 2/162 (1%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L+LS N++  LP  LS   SL  L  S     D  +  L +L  L  L L+ N LR  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSN 108

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
            S    ++  L  LDL  N  +           +L+EL L   ++   P+ +  L  L+ 
Sbjct: 109 IS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 503 LDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQFIPQLN 544
           LDLS N L  +P++      L    ++   +      I  L+
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS 209

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           L+V  + LT L + L A    +T L+   N L  +P     L  L   ++  N++ S+P 
Sbjct: 206 LNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPV 259

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 283
              G   L+ F      L ALP+ L KL   G      NQL    V    L+ LSV D  
Sbjct: 260 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG------NQLTSLPVLPPGLQELSVSDNQ 313

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL----VNGPTPALLKYLRSRLPENEDS 339
             SL  LP E+ K+      L +   L TL S L    V+    A L  L S L +    
Sbjct: 314 LASLPALPSELCKLWAYNNQLTS---LPTLPSGLQELSVSDNQLASLPTLPSELYK---- 366

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                  + +T    L    KEL + G  L+++P       E+ +L +S N +  LP   
Sbjct: 367 --LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLP 421

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           S   SL    + RN++   P++ L  LSS + + L+ NPL +      ++I
Sbjct: 422 SGLLSLS---VYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 468

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
           L+ LDLS N +  +P+   F  LP+L+ L L    L     +    L  LR LDLS N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 27/131 (20%)

Query: 382 ITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNNPL 439
           +  +DLS  +I  ++   +     +QT+ LS N++    PD I T+ SSL  L L NN  
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
                 G   IP L+ LDLS N+ S                        E P DI     
Sbjct: 131 TGSIPRGS--IPNLETLDLSNNMLS-----------------------GEIPNDIGSFSS 165

Query: 500 LRILDLSQNSL 510
           L++LDL  N L
Sbjct: 166 LKVLDLGGNVL 176

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +  LDLS N I +LPP LS+  +L+TL LS NKI D  
Sbjct: 3   LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
           IP++I +   +  ++LS NSI+  +PP L S  SL+ L LS N         L  L+SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 431 CLKLDNNPLR-QVPS 444
            L L+ N L  +VP+
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	544
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.62
PLN03150	623	hypothetical protein; Provisional	98.61
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
PLN03150	623	hypothetical protein; Provisional	98.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.52
KOG4341	483	consensus F-box protein containing LRR [General fu	98.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.31
PRK15386	426	type III secretion protein GogB; Provisional	98.3
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
PRK15386	426	type III secretion protein GogB; Provisional	97.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.9
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.98
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.5
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.47
KOG4308	478	consensus LRR-containing protein [Function unknown	95.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.32
KOG4308	478	consensus LRR-containing protein [Function unknown	95.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.8
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.46
smart00370	26	LRR Leucine-rich repeats, outliers.	92.46
smart00370	26	LRR Leucine-rich repeats, outliers.	90.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.31
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.91
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.08
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.09

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-53  Score=380.55  Aligned_cols=531  Identities=45%  Similarity=0.670  Sum_probs=465.3

Q ss_pred             ChHHHHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCC
Q 009079            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (544)
Q Consensus         1 ~~~~~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~   80 (544)
                      ++++.+.++.-.++++|+..+++.|.++++......+.+.||+...+.++.+++|.++.+.+.+.++..+.++++.+|+.
T Consensus         1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l   80 (565)
T KOG0472|consen    1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL   80 (565)
T ss_pred             CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence            35788999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCC
Q 009079           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (544)
Q Consensus        81 ~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  160 (544)
                      ..+|.+++.+..++.++.++|.+..+|+.++.+..|.+++++.|.+..+++.++.+..++.++..+|.+..+|+.+..+.
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~  160 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS  160 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (544)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~  240 (544)
                      ++..+++.++.+...+..... +++|++++...|.++.+|..++.+.+|..|++..|++..+| .|.+|..|.++.++.|
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence            999999999999999888666 99999999999999999999999999999999999999998 7999999999999999


Q ss_pred             cCCcCchhhh-CCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCcccccccc
Q 009079          241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (544)
Q Consensus       241 ~~~~l~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (544)
                      .++.+|.+.. +++++.+||+.+|+++++|...+..+ |++||+++|.++.+|..++++ .|+.+-+.||++.++.....
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            9999987755 89999999999999999999988877 999999999999999999999 99999999999999999999


Q ss_pred             CCCchHHHHHHhhcCCCCCccccccchhh------hhhhhhcccccceeeecCCCccCCCchhhccCCC---ccEEEcCC
Q 009079          319 NGPTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR  389 (544)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~---L~~L~l~~  389 (544)
                      .+...+.+++++.............+...      ......+.....+.++.++-+++.+|...|....   ...++++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            99999999999985444433221111111      1111222334678888999999999998887655   88999999


Q ss_pred             CCCCCCChhhhcCCCCcE-EEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCC
Q 009079          390 NSIQELPPELSSCASLQT-LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN  468 (544)
Q Consensus       390 ~~l~~l~~~~~~~~~L~~-L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  468 (544)
                      |.+.++|..+..+..+.+ +.+++|. .+..+..++.+++|..|++++|-+.+++.+ +..+..|+.++++.|++... |
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~-isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P  474 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNK-ISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-P  474 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCc-cccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-h
Confidence            999999988766666544 4444444 455666789999999999999999998876 66677899999999977655 3


Q ss_pred             CCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccccc
Q 009079          469 PPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       469 ~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      ..+.-...|+.+-.++|+++.++.. +.++..|.+||+.+|.+..+|+.++++++|+.|+++||+|+.+.
T Consensus       475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr  544 (565)
T KOG0472|consen  475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPR  544 (565)
T ss_pred             HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCH
Confidence            3345556677777788899988655 88899999999999999999999999999999999999998553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-46  Score=412.54  Aligned_cols=500  Identities=27%  Similarity=0.304  Sum_probs=314.8

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc-chhHhh-cCCCCCCEEEcCCCCCC-Ccchh
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNKLS-ELPAA   86 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~~~~~-~l~~~   86 (544)
                      .++.||++++.+....+..+..            +++|+.|++++|.+. .+|..+ ..+++|++|++++|.++ .+|. 
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-  136 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-  136 (968)
T ss_pred             cEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence            4666666666655332222222            455666666666665 555433 36666666666666655 2332 


Q ss_pred             hhCCCCccEEEccCCccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCce
Q 009079           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS  163 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~  163 (544)
                       ..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|+
T Consensus       137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence             34556666666666655 44555666666666666666654 45555666666666666666554 4455566666666


Q ss_pred             EEEecCCccccccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCc
Q 009079          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA  241 (544)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~  241 (544)
                      .|++++|.+.......++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            6666666665444444566666666666666653 34555666666666666666555 345555566666666666666


Q ss_pred             CC-cCchhhhCCCCCCEEECCCCcCcccchhc--ccccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccc
Q 009079          242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL  317 (544)
Q Consensus       242 ~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~--~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~  317 (544)
                      +. .+|..+..+++|+.|++++|.+.......  ...+|+.|++++|.+.+ +|..+..+++|+.+++++|.+.......
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            55 44555666666666666666655332221  12336666666666654 5555566666666666666553211100


Q ss_pred             cCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCCCccEEEcCCCCCCC-C
Q 009079          318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L  395 (544)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l  395 (544)
                      +..        . ..+..........  ...........+.++.+++.+|.+. .+|..+..++.|+.+++++|.+++ +
T Consensus       376 ~~~--------~-~~L~~L~l~~n~l--~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  444 (968)
T PLN00113        376 LCS--------S-GNLFKLILFSNSL--EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI  444 (968)
T ss_pred             HhC--------c-CCCCEEECcCCEe--cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence            000        0 0000000000000  0000011122357788888888877 566777778888888888888776 5


Q ss_pred             ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCc
Q 009079          396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP  475 (544)
Q Consensus       396 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  475 (544)
                      +..+..+++|+.|++++|.+....+..+ ..++|+.|++++|++.+.....+..+++|+.|++++|.+....+..+..++
T Consensus       445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence            5556778888888888888776444433 457888888888888876666688888899999999988888888888889


Q ss_pred             cCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCccccc
Q 009079          476 HLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       476 ~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~  535 (544)
                      +|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+.+
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999887 56777888899999999999988 678888888899999999998875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.3e-45  Score=401.04  Aligned_cols=477  Identities=27%  Similarity=0.340  Sum_probs=393.0

Q ss_pred             cCccEEecccCccc-chhHhhcCCCCCCEEEcCCCCCC-Ccchhh-hCCCCccEEEccCCccc-cCCccccccCCccEEE
Q 009079           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKFD  120 (544)
Q Consensus        45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~  120 (544)
                      .+++.|+++++.+. .++..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++ .+|.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            47999999999887 56778999999999999999987 787755 49999999999999887 4453  4688999999


Q ss_pred             cCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCC-
Q 009079          121 CSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-  197 (544)
Q Consensus       121 l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-  197 (544)
                      +++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.......+..+++|++|++++|.+. 
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            9999987 77888999999999999999876 77888999999999999999988766667899999999999999986 


Q ss_pred             CCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCcccchh-cc-
Q 009079          198 GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC-  273 (544)
Q Consensus       198 ~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~-~~-  273 (544)
                      .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+. .. 
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            67889999999999999999887 67888999999999999999987 6788899999999999999998754333 22 


Q ss_pred             cccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079          274 QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (544)
Q Consensus       274 ~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (544)
                      ..+|+.|++++|.+.+ .|..+..+++|+.+++++|.+....        |....... .+............  .....
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------p~~l~~~~-~L~~L~Ls~n~l~~--~~p~~  375 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--------PKNLGKHN-NLTVLDLSTNNLTG--EIPEG  375 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--------ChHHhCCC-CCcEEECCCCeeEe--eCChh
Confidence            2459999999999887 6777899999999999999875321        11111000 00000000000000  00011


Q ss_pred             hcccccceeeecCCCccC-CCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCC
Q 009079          353 TRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS  430 (544)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  430 (544)
                      ......++.+++++|.+. .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++...+..+..+++|+
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            112356788888888877 677778888999999999998875 777888999999999999999887766678899999


Q ss_pred             EEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-ccCccccCCCCCCeeecCCCC
Q 009079          431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNS  509 (544)
Q Consensus       431 ~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~  509 (544)
                      +|++++|++.+.....+ ..++|+.|++++|+++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus       456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence            99999999876444433 4689999999999999998889999999999999999987 788889999999999999999


Q ss_pred             CC-CCCcccccceeeeEeccCCccccc
Q 009079          510 LQ-SIPEVTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       510 l~-~l~~~l~~~~~L~~l~l~~n~~~~  535 (544)
                      ++ .+|+.+..+++|+.|++++|.+.+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~  561 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSG  561 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccc
Confidence            99 568889999999999999999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.2e-43  Score=314.75  Aligned_cols=457  Identities=28%  Similarity=0.403  Sum_probs=346.9

Q ss_pred             HHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcc
Q 009079            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (544)
Q Consensus         5 ~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~   84 (544)
                      ++....+.+++.+.+.+..+|+.+..             ...+..++.+++++.++|+.+..+..++.+++++|.+..++
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~  130 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP  130 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence            34455667777777777777766655             36677788888888888888888888888888888888887


Q ss_pred             hhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceE
Q 009079           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (544)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  164 (544)
                      +.++.+..|+.++..+|++..+|.++..+.+|..+++.+|.++.+|...-+++.|+++++..|-++.+|+.++.+.+|+.
T Consensus       131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL  210 (565)
T ss_pred             chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence            88888888888888888888888888888888888888888887777666688888888888888888888888888888


Q ss_pred             EEecCCccccccchhhcCccccceEEcCCCcCCCCcccc-cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC
Q 009079          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (544)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  243 (544)
                      |++..|++..++.  |.+|..|+++.++.|++.-+|... ..++++..||+.+|++..+|..+--+++|+.+++++|.++
T Consensus       211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence            8888888887774  788888888888888887777554 4778888888888888888887777788888888888888


Q ss_pred             cCchhhhCCCCCCEEECCCCcCcccchhccccc----ccEEEc-------cCC---CCCC--CCc----cccCCCCccee
Q 009079          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL-------SNN---SLSG--LPP----EIGKMTTLRKL  303 (544)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~----L~~L~l-------~~~---~l~~--l~~----~l~~~~~L~~L  303 (544)
                      .+|..++++ +|+.|-+.+|.+..+........    |++|.=       +..   .-+.  .+.    ......+.+.+
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL  367 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL  367 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence            888888888 88888888887765543322211    222211       000   0000  011    11222334445


Q ss_pred             ccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCcc
Q 009079          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (544)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~  383 (544)
                      ++++-+++.+|+.+|..                                 ....-+..++++++.+.++|..+..+..+.
T Consensus       368 ~~s~~qlt~VPdEVfea---------------------------------~~~~~Vt~VnfskNqL~elPk~L~~lkelv  414 (565)
T KOG0472|consen  368 DVSDKQLTLVPDEVFEA---------------------------------AKSEIVTSVNFSKNQLCELPKRLVELKELV  414 (565)
T ss_pred             cccccccccCCHHHHHH---------------------------------hhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence            55555555444443322                                 111236788999999999999887766554


Q ss_pred             -EEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcc
Q 009079          384 -KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (544)
Q Consensus       384 -~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~  462 (544)
                       .+.++++.++-+|..++.+++|..|++++|-+.+++.+ ++.+..|+.++++.|++..++.. ++....++.+-.++|+
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence             46667777777888899999999999999999998876 57788899999999999888753 5666678888888899


Q ss_pred             cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC
Q 009079          463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS  512 (544)
Q Consensus       463 l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~  512 (544)
                      +..+.+..+.+|.+|+.||+.+|.+..+|..++++++|++|++.||+++.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCC
Confidence            99999998999999999999999999999999999999999999999983

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-38  Score=292.30  Aligned_cols=378  Identities=25%  Similarity=0.352  Sum_probs=229.8

Q ss_pred             CccEEecccCcccchhH-hhcCC--CCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCccccCCccccccCCccEEEc
Q 009079           46 DLQKLILAHNNIEKLKE-DLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~-~~~~~--~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l  121 (544)
                      +-+-|++++..++.+.. .+..+  +.-+.|++++|.+..+ +..|.++++|+.+++.+|.++.+|....-..+|+.|++
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL  132 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence            35678888888875532 33332  2345689998888866 34678889999999988888888877666777889999


Q ss_pred             CCCCCccCC-cccccCcCCCEEEcCCCccccCCc-cccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCC
Q 009079          122 SSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (544)
Q Consensus       122 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (544)
                      ..|.|+.+. ..+..++.|++||++.|.+.+++. .|..-.++++|++++|.|+.+..+.|..+.+|..|.++.|+++.+
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            888888665 357778888888888888887764 355557888888888888888888888888888888888888777


Q ss_pred             c-ccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--
Q 009079          200 P-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--  274 (544)
Q Consensus       200 ~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--  274 (544)
                      | ..|..+++|+.|++..|++..+ -..|+++++|+.+.+..|.+..+ ..+|..+.++++|+++.|++..+...+..  
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            6 4566677788888777776644 24566677777777777776655 33466667777777766666554333221  


Q ss_pred             ccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhh
Q 009079          275 LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT  353 (544)
Q Consensus       275 ~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (544)
                      ..|+.|+++.|.|..+ ++.++.+++|+.|++++|.++.++..                                     
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-------------------------------------  335 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-------------------------------------  335 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-------------------------------------
Confidence            1134444444433331 22233333344444433333322211                                     


Q ss_pred             cccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCC---CCHHHHhCCCCC
Q 009079          354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD---WPDAILTSLSSL  429 (544)
Q Consensus       354 ~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~---~~~~~l~~~~~L  429 (544)
                                           .+..+..|++|.++.|.+..+.+. |..+.+|++|||+.|.+.-   -....|.++++|
T Consensus       336 ---------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  336 ---------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             ---------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence                                 111233455555555555443322 4444555555555554331   122334445555


Q ss_pred             CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEee
Q 009079          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (544)
Q Consensus       430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  482 (544)
                      +.|++.||++..++..+|.+++.|+.|++.+|-+..+++.+|..+ .|++|.+
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence            555555555555555555555555555555555555555555554 4554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-37  Score=292.07  Aligned_cols=362  Identities=26%  Similarity=0.361  Sum_probs=217.8

Q ss_pred             EEEcCCCCCccCC-cccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079          118 KFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (544)
Q Consensus       118 ~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (544)
                      +|++++|++..+. ..|.++++|+++++..|.++.+|.......+|+.|++..|.|+.+....+..++.|+.|+++.|.+
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence            3444444444332 123344444444444444444444433334455555555555555555555555555555555555


Q ss_pred             CCCcc-cccCCCceeEEEccCCccccCC-cCCccCCCCCEEEccCCcCCcCchh-hhCCCCCCEEECCCCcCcccchhcc
Q 009079          197 NGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC  273 (544)
Q Consensus       197 ~~~~~-~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~l~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~  273 (544)
                      .+++. .+..-.++++|++++|.|+.+. ..|..+.+|..+.++.|+++.+|.. |..+++|+.|++..|+|..+....+
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF  241 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF  241 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence            54442 2333344555555555555442 3344555555555555555555433 3345666666666655544322222


Q ss_pred             c--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079          274 Q--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (544)
Q Consensus       274 ~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (544)
                      .  .+++.+.+..|.+..+.+ .|..+.++++|++..|+++.+..                                   
T Consensus       242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-----------------------------------  286 (873)
T KOG4194|consen  242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-----------------------------------  286 (873)
T ss_pred             cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-----------------------------------
Confidence            1  235555555555555433 36667777777777776644321                                   


Q ss_pred             hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCC
Q 009079          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (544)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  429 (544)
                                             .+++++..|+.|++++|.|..+ +++++.+++|+.|+|+.|.|+.++.+.|..+..|
T Consensus       287 -----------------------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  287 -----------------------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             -----------------------ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence                                   2455567777777777777764 3456777788888888888888777777777888


Q ss_pred             CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC---CCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeec
Q 009079          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE---NPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDL  505 (544)
Q Consensus       430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l  505 (544)
                      ++|+|++|++..+...+|.++++|+.||+++|.++...   ...|.++++|+.|++.+|++++||.. |..++.|+.|||
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence            88888888887777777778888888888887665432   34567778888888888888877644 445788888888


Q ss_pred             CCCCCCCC-CcccccceeeeEeccCCcccccccc
Q 009079          506 SQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       506 ~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      .+|.+.+| |+.+..+ .|++|.++.-+|-++||
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence            88888777 6666666 77777776666655554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-38  Score=310.72  Aligned_cols=455  Identities=27%  Similarity=0.333  Sum_probs=377.8

Q ss_pred             eeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCC
Q 009079           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (544)
Q Consensus        13 ~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~   91 (544)
                      .+|.|..++.-||..++..             ..+..|+++.|.+-..| +...+.-+|+.|++++|.+...|..+..++
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~   68 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS   68 (1081)
T ss_pred             CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence            4688888899999888764             44888999998776544 345556679999999999999999999999


Q ss_pred             CccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC-
Q 009079           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-  170 (544)
Q Consensus        92 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-  170 (544)
                      +|+.|+++.|.+..+|....++.+|+++++.+|.+..+|..+..+++|+.|+++.|.+..+|..+..+..++.+.+++| 
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence            9999999999999999889999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             ccccccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079          171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (544)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l  249 (544)
                      .+...+     . ..++.+++..+.+. .++..+..++.  .+++.+|.+.  ...+..+++|+.+....|.+..+.   
T Consensus       149 ~~~~lg-----~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~---  215 (1081)
T KOG0618|consen  149 KIQRLG-----Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE---  215 (1081)
T ss_pred             hhhhhc-----c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEE---
Confidence            222222     2 22778888888774 45556666665  7999999888  246778899999999988887552   


Q ss_pred             hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (544)
                      -.-++++.|+.+.|.++.......+..+++++++.+++..+|.++..|.+|+.+++..|.+..++...+..         
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~---------  286 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI---------  286 (1081)
T ss_pred             ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh---------
Confidence            24578999999999999777777777799999999999999999999999999999999987665544332         


Q ss_pred             hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhh----------
Q 009079          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL----------  399 (544)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~----------  399 (544)
                                                 .+++.+.+..|.+..+|+.......|++|++..|++..+|+.+          
T Consensus       287 ---------------------------~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  287 ---------------------------TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT  339 (1081)
T ss_pred             ---------------------------hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence                                       3556666677777777777776777777777777776655321          


Q ss_pred             ----------------hcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079          400 ----------------SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (544)
Q Consensus       400 ----------------~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  463 (544)
                                      ...+.|+.|.+.+|.+++--...+.++++|++|+|++|++..+++..+.+++.|++|++++|++
T Consensus       340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence                            1235688889999999987777789999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcc
Q 009079          464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTEL  532 (544)
Q Consensus       464 ~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~  532 (544)
                      +.+. .+++.+..|++|...+|.+...| .+..+++|+.+|++.|.++  .+|+.... +.|+.||++||.
T Consensus       420 ~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  420 TTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            9987 77899999999999999999999 6789999999999999998  44654333 899999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-35  Score=290.52  Aligned_cols=459  Identities=26%  Similarity=0.338  Sum_probs=287.5

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~   87 (544)
                      .-.++.||+|+|++.+.|..+..             +..|+.|+++.|-+..+|.+..++++|+++.|.+|....+|+.+
T Consensus        44 ~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~  110 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI  110 (1081)
T ss_pred             eeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH
Confidence            33455555555555555544433             24455555555555555555555555555555555555555555


Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCC-CCccCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEE
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKL  165 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L  165 (544)
                      ..+++|++|+++.|.+..+|..+..+..++.+..++| .+..++.    .. ++++++..+.+. .++..+..+..  .|
T Consensus       111 ~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~i~~l~~--~l  183 (1081)
T KOG0618|consen  111 SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLIDIYNLTH--QL  183 (1081)
T ss_pred             HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcchhhhhe--ee
Confidence            5555555555555555555555555555555555554 1112211    11 444444444433 23333333333  58


Q ss_pred             EecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC
Q 009079          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (544)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l  245 (544)
                      ++++|.+....   +..+..|+.+....|++..+.   ..-++++.|+.+.|.++.+. ......+|+.++++.+.+..+
T Consensus       184 dLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~~l  256 (1081)
T KOG0618|consen  184 DLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLSNL  256 (1081)
T ss_pred             ecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeec-cccccccceeeecchhhhhcc
Confidence            88888776222   566677777777777765442   22357888888888887442 223356899999999999999


Q ss_pred             chhhhCCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchH
Q 009079          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA  324 (544)
Q Consensus       246 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  324 (544)
                      |+++..+.+|+.++...|.+..++...+... |+.+.+..|.+..+|+.......|++|++..|.+..++...+... + 
T Consensus       257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~-~-  334 (1081)
T KOG0618|consen  257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL-N-  334 (1081)
T ss_pred             hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhh-h-
Confidence            9999999999999999999988888777655 999999999999999988889999999999999987765332211 1 


Q ss_pred             HHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh-hccCCCccEEEcCCCCCCC-CChhhhcC
Q 009079          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE-LPPELSSC  402 (544)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~-l~~~~~~~  402 (544)
                                                      ..++.+..+.+.+...|.. -...+.|+.|.+.+|.+++ .-+.+...
T Consensus       335 --------------------------------~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  335 --------------------------------ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             --------------------------------HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence                                            1122333333333333321 1124567777777777776 22346677


Q ss_pred             CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEee
Q 009079          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  482 (544)
                      ++||.|+|++|.+..++...+.+++.|++|+++||++..++ .....++.|+.|...+|++....  .+..++.|+.+|+
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDL  459 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEec
Confidence            77777777777777777777777777777777777777776 34667777777777777776654  5677777778888


Q ss_pred             cCCccc--ccCccccCCCCCCeeecCCCCCCCC-CcccccceeeeEeccCCc
Q 009079          483 RRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTE  531 (544)
Q Consensus       483 s~n~l~--~i~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n  531 (544)
                      |.|.++  .+|.... .++|+.||++||.-... ...+..+.++...++.-+
T Consensus       460 S~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            777776  3333222 26788888888764432 333455555555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6e-34  Score=269.11  Aligned_cols=379  Identities=28%  Similarity=0.417  Sum_probs=305.3

Q ss_pred             hhcceeEcCCCccc--ccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchh
Q 009079            9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~   86 (544)
                      ..++-+|+++|...  .+|.++.+             .+.++.|.+...++..+|+.++.+.+|++|.+.+|++..+-..
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE   73 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE   73 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence            44667888888876  67776665             5778899999999999999999999999999999998887778


Q ss_pred             hhCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCcc-ccCCCCce
Q 009079           87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS  163 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~  163 (544)
                      ++.++.|+.+.+..|++.  .+|..+..+..|+.|+++.|+++..|..+..-+++-.|++++|+++++|.. +.++..|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            888899999999988876  788888899999999999999999998888888999999999999988865 56778888


Q ss_pred             EEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEEccCCccc--cCCcCCccCCCCCEEEccCC
Q 009079          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN  240 (544)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~l~l~~~  240 (544)
                      .|+++.|++..++.. ...+..|+.|.+++|.+..+. ..+.++++|+.|.++++.-+  .+|..+..+.+|+.++++.|
T Consensus       154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            899999999888877 778888999999998875432 34566788888999988766  78889999999999999999


Q ss_pred             cCCcCchhhhCCCCCCEEECCCCcCcccchhccccc-ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccC
Q 009079          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (544)
Q Consensus       241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  319 (544)
                      .+..+|..+.++++|+.|++++|.|+++........ +++|+++.|.++.+|..+..++.|+.|.+.+|.+.        
T Consensus       233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~--------  304 (1255)
T KOG0444|consen  233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT--------  304 (1255)
T ss_pred             CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence            999999999999999999999999998877665544 99999999999999999999999999988888752        


Q ss_pred             CCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhh
Q 009079          320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL  399 (544)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~  399 (544)
                                                                       +..||++++.+..|+.+...+|.+.-+|+.+
T Consensus       305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl  335 (1255)
T KOG0444|consen  305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL  335 (1255)
T ss_pred             -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence                                                             3456777777777777777777777777778


Q ss_pred             hcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079          400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      +.|+.|+.|.|+.|.+..++.+ +.-++-|++|++..|.---.++.--..-++|+.-++.
T Consensus       336 cRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            8888888888887777666544 4667778888887776333222211122445554444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-33  Score=266.85  Aligned_cols=362  Identities=24%  Similarity=0.355  Sum_probs=271.6

Q ss_pred             ccCCccEEEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceE
Q 009079          112 SATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL  189 (544)
Q Consensus       112 ~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  189 (544)
                      -++-.+-+++++|.++  .+|.....+++++.|.+....+..+|+.++.+++|++|.++.|.+..+... +..+++|+.+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv   83 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSV   83 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHH
Confidence            4556677888888887  778888888889999999888888998888889999998888887766443 6666677777


Q ss_pred             EcCCCcCC--CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh-hhCCCCCCEEECCCCcCc
Q 009079          190 IASKNLLN--GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       190 ~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~i~  266 (544)
                      .+..|.+.  ++|..+..+..|+.||+|.|++...|..+...+++-.|++++|.|..+|.. +-++..            
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD------------  151 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD------------  151 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh------------
Confidence            66666663  456666666666666666666666665555555555556665555555543 223333            


Q ss_pred             ccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchh
Q 009079          267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE  346 (544)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (544)
                                |-.||+++|.+..+|+.+.++.+|+.|++++|++.........                           
T Consensus       152 ----------LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP---------------------------  194 (1255)
T KOG0444|consen  152 ----------LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP---------------------------  194 (1255)
T ss_pred             ----------HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---------------------------
Confidence                      4455555555555666666666666666666665322111100                           


Q ss_pred             hhhhhhhcccccceeeecCCCc--cCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh
Q 009079          347 DLITMATRLSVTSKELSLEGMN--LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT  424 (544)
Q Consensus       347 ~~~~~~~~~~~~l~~l~l~~~~--~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  424 (544)
                              ..++++.+.+++.+  +..+|..+-.+.+|..+|++.|++..+|.++..+++|+.|+|++|+|+++.... .
T Consensus       195 --------smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~  265 (1255)
T KOG0444|consen  195 --------SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-G  265 (1255)
T ss_pred             --------cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-H
Confidence                    11244555555543  337888888888999999999999999999999999999999999999876543 5


Q ss_pred             CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC-CCCCCCCccCceEeecCCcccccCccccCCCCCCee
Q 009079          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL  503 (544)
Q Consensus       425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L  503 (544)
                      ...+|++|+++.|+++.++.. +..+++|+.|...+|+++..+ |..++.+..|+.+..++|.+.-+|+++..|+.|+.|
T Consensus       266 ~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  266 EWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             HHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence            668899999999999988754 778999999999999887655 566888999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCcccccceeeeEeccCCccc
Q 009079          504 DLSQNSLQSIPEVTYIFVMLQKKSINTELV  533 (544)
Q Consensus       504 ~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~  533 (544)
                      .+++|++..+|+.+-.++-|+.||+..|+-
T Consensus       345 ~L~~NrLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  345 KLDHNRLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cccccceeechhhhhhcCCcceeeccCCcC
Confidence            999999999999999999999999998863

>PLN03210 Resistant to P

Probab=99.89  E-value=3e-21  Score=212.70  Aligned_cols=239  Identities=22%  Similarity=0.295  Sum_probs=138.1

Q ss_pred             HhhcCCCCCCEEEcCCCCCC-------CcchhhhCC-CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCccc
Q 009079           62 EDLRNLPLLTVLNVSHNKLS-------ELPAAIGEL-HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL  133 (544)
Q Consensus        62 ~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  133 (544)
                      .+|.++++|+.|.+..+...       .+|..+..+ ++|+.|.+.++.++.+|..+ ...+|+.|+++++.+..++..+
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence            45677777777777544211       345555444 34777777777776676655 4567777777777777666666


Q ss_pred             ccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEcCCCc-CCCCcccccCCCcee
Q 009079          134 GRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLI  210 (544)
Q Consensus       134 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~  210 (544)
                      ..+++|+.++++++. +..+| .+..+++|++|++++|. +..++. .+..+++|+.|++++|. ++.+|..+ ++++|+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~  707 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY  707 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence            667777777776654 34444 35566777777776653 333333 35666677777776653 45555443 566677


Q ss_pred             EEEccCCccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch---------hcccccccEE
Q 009079          211 RLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV---------EACQLRLSVL  280 (544)
Q Consensus       211 ~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~---------~~~~~~L~~L  280 (544)
                      .|++++|... .+|.   ...+|+.|+++++.+..+|..+ .+++|+.|.+.++....+..         .....+|+.|
T Consensus       708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence            7777666322 3332   1345666777777666666543 45666666665533221110         0112346666


Q ss_pred             EccCCCC-CCCCccccCCCCcceeccCCC
Q 009079          281 DLSNNSL-SGLPPEIGKMTTLRKLLLTGN  308 (544)
Q Consensus       281 ~l~~~~l-~~l~~~l~~~~~L~~L~l~~~  308 (544)
                      ++++|.. ..+|..++++++|+.|++++|
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            6666633 335555666666666666655

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=2.1e-21  Score=213.95  Aligned_cols=322  Identities=24%  Similarity=0.292  Sum_probs=177.0

Q ss_pred             ecCccEEecccCccc-------chhHhhcCCC-CCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCC
Q 009079           44 AVDLQKLILAHNNIE-------KLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA  115 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~-------~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~  115 (544)
                      +.+|+.|.+..+...       .+|+.+..++ +|+.|.+.++.+..+|..+ ...+|+.|++.++.+..++..+..+++
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence            445666555443211       2444444443 3666666666555555544 345666666666666555555555666


Q ss_pred             ccEEEcCCCC-CccCCcccccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCC-ccccccchhhcCccccceEEcC
Q 009079          116 LVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIAS  192 (544)
Q Consensus       116 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~  192 (544)
                      |+.|+++++. +..+| .++.+++|++|++++|. +..+|..+..+++|+.|++++| .+..++..  .++++|+.|+++
T Consensus       636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Ls  712 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLS  712 (1153)
T ss_pred             CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCC
Confidence            6666665543 33444 34555666666666553 3355555556666666666554 33344432  145556666666


Q ss_pred             CCcC-CCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc--------hhhhCCCCCCEEECCCC
Q 009079          193 KNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--------AELGKLSKLGTLDLHSN  263 (544)
Q Consensus       193 ~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~--------~~l~~~~~L~~L~l~~~  263 (544)
                      +|.. ..+|..   .++|+.|+++++.+..+|..+ .+++|+.|.+.++....+.        ......++|+.|++++|
T Consensus       713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            5532 223321   234566666666665555443 3455555555543221111        11123356666666665


Q ss_pred             c-Ccccchhccc-ccccEEEccCC-CCCCCCccccCCCCcceeccCCCCC-ccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079          264 Q-LKEYCVEACQ-LRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPL-RTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (544)
Q Consensus       264 ~-i~~~~~~~~~-~~L~~L~l~~~-~l~~l~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (544)
                      . +..+|..... .+|+.|++++| .+..+|..+ .+++|+.|++++|.. ..++                         
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-------------------------  842 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-------------------------  842 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------------------------
Confidence            3 2334433222 23666666665 344455544 567777777777642 1110                         


Q ss_pred             ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCCChhhhcCCCCcEEEccCC
Q 009079          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN  413 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~  413 (544)
                                    ....+++.++++++.++.+|..+..+++|+.|++++|+ +..+|.....+++|+.+++++|
T Consensus       843 --------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        843 --------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             --------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence                          11235677777777777777777778888888888764 6667777777788888888877

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=3.7e-25  Score=198.91  Aligned_cols=410  Identities=20%  Similarity=0.251  Sum_probs=239.0

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (544)
                      ..+|+++.+++++|+++..               .-..|+|..|+|+.+|+ +|+.+++|+.|||++|+|+.| |++|.+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~---------------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPP---------------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccCCC---------------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            4689999999999988854               48899999999999985 899999999999999999977 679999


Q ss_pred             CCCccEEEccC-CccccCCcc-ccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccCCc-cccCCCCceEE
Q 009079           90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (544)
Q Consensus        90 ~~~L~~L~l~~-~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L  165 (544)
                      +++|..|-+.+ |.|+++|.. |+.+..|+-|.+.-|++.-++ +.+..++++..|.+.+|.+..+++ .+..+..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            99988877766 799999876 899999999999888888555 467889999999999999888876 57777777777


Q ss_pred             EecCCcccc------------ccchhhcCccccceEEcCCCcCCCCcc-cccC-CCceeEEEccCCccc-cCC-cCCccC
Q 009079          166 DVEGNKLTV------------LSNNLIASWTMLTELIASKNLLNGMPE-TIGS-LSRLIRLDLHQNRIL-SIP-SSISGC  229 (544)
Q Consensus       166 ~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~-~~~L~~L~l~~~~~~-~l~-~~~~~~  229 (544)
                      .+..+++..            .....++.........+.+.++..++. .+.. +.++..--.+.+... ..| ..|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            776665220            111112222222222222222221110 0000 001100001111111 111 124445


Q ss_pred             CCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccccc--ccEEEccCCCCCC-CCccccCCCCcceecc
Q 009079          230 CSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG-LPPEIGKMTTLRKLLL  305 (544)
Q Consensus       230 ~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l  305 (544)
                      ++|+++++++|.++.+ +.+|.+...+++|.+..|++..+...++..-  |+.|++.+|+|+. .|..|.....|..|++
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            5555555555555544 3345555555555555555555544444322  5555555555555 2334555556666666


Q ss_pred             CCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCC----c--------
Q 009079          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI----P--------  373 (544)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i----~--------  373 (544)
                      -.|++.-       .+.   +.++..|+.......         ..-.+.+..++.+.+++..+...    |        
T Consensus       354 ~~Np~~C-------nC~---l~wl~~Wlr~~~~~~---------~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s  414 (498)
T KOG4237|consen  354 LSNPFNC-------NCR---LAWLGEWLRKKSVVG---------NPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS  414 (498)
T ss_pred             ccCcccC-------ccc---hHHHHHHHhhCCCCC---------CCCCCCCchhccccchhccccccccCCccccCCCCC
Confidence            5555421       111   111222211111000         00011111223333333222111    0        


Q ss_pred             -hhhccCCCc-cEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079          374 -SEIWEAGEI-TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (544)
Q Consensus       374 -~~~~~~~~L-~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~  451 (544)
                       ..-..++-+ +....++..++.+|..+  .....++++.+|.++.++.+   .+.+| .+++++|++..+....|.++.
T Consensus       415 ~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~t  488 (498)
T KOG4237|consen  415 SPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMT  488 (498)
T ss_pred             CCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchh
Confidence             000112222 23445555555566532  23567888999999988877   34666 889999999888877888899


Q ss_pred             CcceEecCCc
Q 009079          452 MLQILDLSYN  461 (544)
Q Consensus       452 ~L~~L~l~~n  461 (544)
                      +|..|-++.|
T Consensus       489 ql~tlilsyn  498 (498)
T KOG4237|consen  489 QLSTLILSYN  498 (498)
T ss_pred             hhheeEEecC
Confidence            9888888754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=5.1e-22  Score=203.00  Aligned_cols=256  Identities=24%  Similarity=0.268  Sum_probs=177.8

Q ss_pred             cceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcC
Q 009079          186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (544)
Q Consensus       186 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i  265 (544)
                      -..|+++++.++.+|..+.  ++|+.|++.+|.++.+|..   .++|++|++++|.++.+|..   .++|+.|++++|.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence            4567777777777776554  3677777777777777642   46777777777777777642   35777777777777


Q ss_pred             cccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccch
Q 009079          266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (544)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (544)
                      ..++.  ....|+.|++++|.+..+|..   .++|+.|++++|.+..++.                              
T Consensus       275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~------------------------------  319 (788)
T PRK15387        275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA------------------------------  319 (788)
T ss_pred             hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC------------------------------
Confidence            76654  224477777777777776652   3567778888777765432                              


Q ss_pred             hhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhC
Q 009079          346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS  425 (544)
Q Consensus       346 ~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~  425 (544)
                               .+..++.+++++|.+..+|..   ..+|+.|++++|.++.+|..   .++|+.|++++|.++.++..    
T Consensus       320 ---------lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l----  380 (788)
T PRK15387        320 ---------LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL----  380 (788)
T ss_pred             ---------CcccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc----
Confidence                     112355666677777766642   24688888888888887753   35677888888888776532    


Q ss_pred             CCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeec
Q 009079          426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL  505 (544)
Q Consensus       426 ~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l  505 (544)
                      ..+|+.|++++|++..++..    .++|+.|++++|.++.+..    ...+|+.|++++|.++.+|..+..+++|+.|++
T Consensus       381 ~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        381 PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  452 (788)
T ss_pred             ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc----chhhhhhhhhccCcccccChHHhhccCCCeEEC
Confidence            25788888888888776542    3578888888888776532    134677888888888888888778888888888


Q ss_pred             CCCCCC
Q 009079          506 SQNSLQ  511 (544)
Q Consensus       506 ~~n~l~  511 (544)
                      ++|+++
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            888877

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=7.6e-22  Score=201.70  Aligned_cols=258  Identities=30%  Similarity=0.374  Sum_probs=218.0

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~   89 (544)
                      .-..|||+.+.++.+|..+.               .+++.|++.+|.++.+|..   .++|++|++++|+++.+|..   
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---  260 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---  260 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---
Confidence            45689999999999997664               3599999999999998853   58999999999999998753   


Q ss_pred             CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  169 (544)
                      .++|+.|++++|.++.+|..   .++|+.|++++|+++.+|..   .++|+.|++++|.+..+|..   ..+|+.|++++
T Consensus       261 p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~  331 (788)
T PRK15387        261 PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYN  331 (788)
T ss_pred             ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---ccccccccccc
Confidence            46899999999999988763   35788999999999988763   47899999999999988753   34688999999


Q ss_pred             CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (544)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l  249 (544)
                      |.++.++.    ...+|+.|++++|.+..+|..   .++|+.|++++|.+..+|...   .+|+.|++++|.+..+|.. 
T Consensus       332 N~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l-  400 (788)
T PRK15387        332 NQLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL-  400 (788)
T ss_pred             Cccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCcccc---cccceEEecCCcccCCCCc-
Confidence            99987764    125799999999999988763   357889999999999887643   5799999999999988753 


Q ss_pred             hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCcc
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~  312 (544)
                        .++|+.|++++|.+..++..  ...|+.|++++|.++.+|..+..++.++.+++++|++..
T Consensus       401 --~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        401 --PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             --ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence              36899999999999988753  346899999999999999999999999999999999864

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-22  Score=181.99  Aligned_cols=388  Identities=23%  Similarity=0.303  Sum_probs=262.6

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCC-CCCCCcch-
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSH-NKLSELPA-   85 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~-~~~~~l~~-   85 (544)
                      ....+++|..|+|+.||++.|..            .++||+|++|.|.|+.| |++|..++.+..|-+.+ |+|+++|. 
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CcceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            35678999999999999999887            45699999999999977 57999999998877766 89999987 


Q ss_pred             hhhCCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc-------------
Q 009079           86 AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT-------------  150 (544)
Q Consensus        86 ~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-------------  150 (544)
                      +|.++..|+-|.+.-|.+.-++ +.|..+++|..|.+.+|.+..++. .+..+..++.+.+..+.+-             
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            8999999999999999888554 459999999999999999998886 7888889999888777532             


Q ss_pred             cCCccccCCCCceEEEecCCccccccchhhcCccccceE---EcCCCcC-CCCc-ccccCCCceeEEEccCCccccC-Cc
Q 009079          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL---IASKNLL-NGMP-ETIGSLSRLIRLDLHQNRILSI-PS  224 (544)
Q Consensus       151 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~-~~~~-~~l~~~~~L~~L~l~~~~~~~l-~~  224 (544)
                      ..+-.++.+.-..-..+.+.++..+....|...  ++.+   -.+.+.. ...| ..|..+++|+++++++|+++.+ +.
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~  292 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG  292 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence            112223333333333444445555555444332  2222   1122222 2233 3578888999999999998876 45


Q ss_pred             CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccccc--ccEEEccCCCCCC------CCcccc
Q 009079          225 SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG------LPPEIG  295 (544)
Q Consensus       225 ~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~L~l~~~~l~~------l~~~l~  295 (544)
                      +|.+...+++|.+..|.+..+ ...|.++..|+.|++.+|+|+.+....+..-  |.+|.+-.|.+.-      +-+|+.
T Consensus       293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr  372 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR  372 (498)
T ss_pred             hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence            678888899999999988866 3457888899999999999988877776643  8888887765432      112221


Q ss_pred             C-----------CCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079          296 K-----------MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (544)
Q Consensus       296 ~-----------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (544)
                      .           -..++.+.++...+......     .++.                 ..............+.=+...+
T Consensus       373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~-----~~ee-----------------~~~~~s~~cP~~c~c~~tVvRc  430 (498)
T KOG4237|consen  373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG-----GPEE-----------------LGCLTSSPCPPPCTCLDTVVRC  430 (498)
T ss_pred             hCCCCCCCCCCCCchhccccchhccccccccC-----Cccc-----------------cCCCCCCCCCCCcchhhhhHhh
Confidence            1           11233333333322211100     0000                 0000000001111112234455


Q ss_pred             CCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       365 ~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      ++..+..+|+.+  .....++.+.+|.++.+|..  .+.+| .+++++|.+..+....|.++..|.+|.+++|
T Consensus       431 Snk~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  431 SNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            666666666665  34567788888888888876  55677 8899999888887777888888888888765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=6.6e-20  Score=188.92  Aligned_cols=246  Identities=25%  Similarity=0.380  Sum_probs=166.2

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  125 (544)
                      +...|++++..++.+|..+.  ++|+.|++++|.++.+|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            45667777776666665443  467777777777776665443  467777777777776665442  357777777777


Q ss_pred             CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (544)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (544)
                      +..+|..+.  .+|+.|++++|.+..+|..+.  ++|+.|++++|.++.++...   .+.|+.|++++|.+..+|..+. 
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l---p~sL~~L~Ls~N~Lt~LP~~l~-  324 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL---PSGITHLNVQSNSLTALPETLP-  324 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc---hhhHHHHHhcCCccccCCcccc-
Confidence            776665443  467777777777776665543  46777777777777655431   1357777777777776665432 


Q ss_pred             CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (544)
Q Consensus       206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~  285 (544)
                       ++|+.|++++|.++.+|..+  +++|+.|++++|.+..+|..+  .++|+.|++++|.++.++... ...|+.|++++|
T Consensus       325 -~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N  398 (754)
T PRK15370        325 -PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL-PAALQIMQASRN  398 (754)
T ss_pred             -ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence             57788888888777776655  367888888888877777644  367888888888888776653 235788888888


Q ss_pred             CCCCCCcccc----CCCCcceeccCCCCCc
Q 009079          286 SLSGLPPEIG----KMTTLRKLLLTGNPLR  311 (544)
Q Consensus       286 ~l~~l~~~l~----~~~~L~~L~l~~~~~~  311 (544)
                      ++..+|..+.    .++.+..+++.+|++.
T Consensus       399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            8877765443    3467778888888764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=8.9e-20  Score=187.93  Aligned_cols=246  Identities=26%  Similarity=0.411  Sum_probs=204.6

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~   89 (544)
                      ....|+++++.++.+|..+.               ++++.|++++|.++.+|..+.  .+|++|++++|.++.+|..+. 
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-  240 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-  240 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence            56889999999999986553               459999999999999987664  599999999999999987654 


Q ss_pred             CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  169 (544)
                       .+|+.|++++|.+..+|..+.  .+|+.|++++|+++.+|..+.  ++|+.|++++|.++.+|..+.  ++|+.|++++
T Consensus       241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence             479999999999999987764  589999999999998887654  589999999999998886553  5799999999


Q ss_pred             CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (544)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l  249 (544)
                      |.++.++...   .++|+.|++++|.++.+|..+.  ++|+.|++++|.++.+|..+  .+.|+.|++++|.+..+|..+
T Consensus       314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        314 NSLTALPETL---PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENL  386 (754)
T ss_pred             CccccCCccc---cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence            9998776532   3689999999999998887663  68999999999999887755  368999999999999998765


Q ss_pred             hCCCCCCEEECCCCcCcccchhccc-----ccccEEEccCCCCCC
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG  289 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~-----~~L~~L~l~~~~l~~  289 (544)
                      .  ..|+.|++++|++..++.....     +.+..+++.+|.+..
T Consensus       387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            4  3699999999999887654221     347899999998763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=7.6e-20  Score=145.93  Aligned_cols=164  Identities=29%  Similarity=0.503  Sum_probs=95.9

Q ss_pred             CceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccE
Q 009079           39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK  118 (544)
Q Consensus        39 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~  118 (544)
                      ..++++.+++.|.+++|++..+|..++.+.+|+.|++.+|++..+|..++.+++|+.|++.-|.+..+|..|+.++.|+.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            33444556666666666666666666666666666666666666666666666666666665555556666666666666


Q ss_pred             EEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079          119 FDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (544)
Q Consensus       119 L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (544)
                      |++..|++.  .+|..|..++.|+.|.+++|.++.+|..++++.+|+.|.++.|.                        +
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd------------------------l  162 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND------------------------L  162 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc------------------------h
Confidence            666665554  45555555555555555555555555555555555555555554                        4


Q ss_pred             CCCcccccCCCceeEEEccCCccccCCcCC
Q 009079          197 NGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (544)
Q Consensus       197 ~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~  226 (544)
                      -++|..++.+..|++|.+.+|+++.+|..+
T Consensus       163 l~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  163 LSLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             hhCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            444555555555555555555555555444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=4.7e-19  Score=141.44  Aligned_cols=158  Identities=31%  Similarity=0.521  Sum_probs=148.0

Q ss_pred             HhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchh
Q 009079            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (544)
Q Consensus         7 ~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~   86 (544)
                      .++.++.+.||+|.++.+|+.++.             +++|+.|+++.|+++++|.+++.+++|++|++.-|.+..+|..
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~-------------l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAE-------------LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHH-------------hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc
Confidence            467889999999999999988876             5899999999999999999999999999999999999999999


Q ss_pred             hhCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceE
Q 009079           87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  164 (544)
                      |+.++.|+.|++++|++.  .+|..|..+..|+.|++++|.+..+|..++++++|+.|.+++|.+-++|+.++.+..|++
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre  177 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE  177 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence            999999999999999887  789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCccccccc
Q 009079          165 LDVEGNKLTVLSN  177 (544)
Q Consensus       165 L~l~~~~~~~~~~  177 (544)
                      |.+.+|+++.++.
T Consensus       178 lhiqgnrl~vlpp  190 (264)
T KOG0617|consen  178 LHIQGNRLTVLPP  190 (264)
T ss_pred             HhcccceeeecCh
Confidence            9998888877664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=1.8e-17  Score=159.29  Aligned_cols=158  Identities=22%  Similarity=0.226  Sum_probs=110.4

Q ss_pred             hccC-CCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCC----HHHHhCCCCCCEEECCCCCCCcCC--
Q 009079          376 IWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWP----DAILTSLSSLSCLKLDNNPLRQVP--  443 (544)
Q Consensus       376 ~~~~-~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~i~~~~--  443 (544)
                      +..+ ++|++|++++|.++.     ++..+..+++|++|++++|.+++..    ...+..+++|++|++++|.+.+..  
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            3334 678888888888773     3445667778888888888887522    223455678888888888876432  


Q ss_pred             --CCccCCCCCcceEecCCcccCCCCCCCCC-----CCccCceEeecCCccc-----ccCccccCCCCCCeeecCCCCCC
Q 009079          444 --SDGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       444 --~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~-----~i~~~~~~~~~L~~L~l~~n~l~  511 (544)
                        ...+..+++|+.|++++|.+++.....+.     ..+.|+.|++++|.++     .+...+..+++|+.+++++|.++
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence              12356678889999988877764333322     2378999999999885     33445556788999999999988


Q ss_pred             C-----CCcccccc-eeeeEeccCCccc
Q 009079          512 S-----IPEVTYIF-VMLQKKSINTELV  533 (544)
Q Consensus       512 ~-----l~~~l~~~-~~L~~l~l~~n~~  533 (544)
                      .     +...+... +.|+++++.+|++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         292 EEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            2     33344445 7889999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=7.2e-17  Score=155.16  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             EEcCCCCCC--CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc
Q 009079           73 LNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (544)
Q Consensus        73 L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~  127 (544)
                      |+|..+.+.  .....+..+.+|++|+++++.++     .++..+...+.+++++++++.+.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG   64 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence            455555544  33334455556666666666653     23334445555666666555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.47  E-value=9.3e-15  Score=130.62  Aligned_cols=245  Identities=22%  Similarity=0.254  Sum_probs=126.5

Q ss_pred             cCCCceeEEEccCCccc-----cCCcCCccCCCCCEEEccCCcCC----cCch-------hhhCCCCCCEEECCCCcCcc
Q 009079          204 GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS----ALPA-------ELGKLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       204 ~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~l~l~~~~~~----~l~~-------~l~~~~~L~~L~l~~~~i~~  267 (544)
                      ....+++++++++|.+.     .+...+...+.|+..++++-...    .+|.       ++..+|+|+.|++|+|.+..
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            33445555555555444     22233444445555555543222    2232       35566677777777776542


Q ss_pred             cchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhh
Q 009079          268 YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (544)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (544)
                      -...                 .+-..+.++..|++|.+.+|.+.............+..                     
T Consensus       107 ~g~~-----------------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------------------  148 (382)
T KOG1909|consen  107 KGIR-----------------GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------------------  148 (382)
T ss_pred             cchH-----------------HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------------------
Confidence            1111                 12223567888899999888875543322211110000                     


Q ss_pred             hhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCC----C
Q 009079          348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKD----W  418 (544)
Q Consensus       348 ~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~----~  418 (544)
                                              ......+.+.|+.+.+.+|++.+     +...+...+.|+.+.+++|.|..    .
T Consensus       149 ------------------------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a  204 (382)
T KOG1909|consen  149 ------------------------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA  204 (382)
T ss_pred             ------------------------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH
Confidence                                    00112224567777777776655     33446666777777777776654    2


Q ss_pred             CHHHHhCCCCCCEEECCCCCCCcC----CCCccCCCCCcceEecCCcccCCCCCCCC-----CCCccCceEeecCCccc-
Q 009079          419 PDAILTSLSSLSCLKLDNNPLRQV----PSDGFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR-  488 (544)
Q Consensus       419 ~~~~l~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~ls~n~l~-  488 (544)
                      ....|..|++|++|+|++|-++..    .+..++.+++|+.++++.|.+...+..+|     ...|+|+.|.+.+|.|+ 
T Consensus       205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            234466677777777777766532    22334555566666666665555544332     22455555555555544 


Q ss_pred             ----ccCccccCCCCCCeeecCCCCC
Q 009079          489 ----EAPTDILRLQQLRILDLSQNSL  510 (544)
Q Consensus       489 ----~i~~~~~~~~~L~~L~l~~n~l  510 (544)
                          .+..++..-+.|+.|+|++|++
T Consensus       285 da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  285 DAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHHhcchhhHHhcCCcccc
Confidence                1122233344455555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.1e-14  Score=137.96  Aligned_cols=206  Identities=30%  Similarity=0.376  Sum_probs=147.0

Q ss_pred             hHHHHHhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC
Q 009079            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (544)
Q Consensus         2 ~~~~~~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~   81 (544)
                      +.+++.+.+-.++.|++..++.+|...+.  ..         +..-...+++.|.+.++|..+..|..|+.+.++.|.+.
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~~---------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r  111 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--YD---------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR  111 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCcccc--cc---------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence            45777888888888888888877755544  11         23456677888888888877777778888888888888


Q ss_pred             CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCC
Q 009079           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (544)
Q Consensus        82 ~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  161 (544)
                      .+|.++.++..|++++++.|++..+|..+..++ |+.|-+++|+++.+|..++...+|..|+.+.|.+..+|..++++.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            888888888888888888888877776655544 6777777777777777777777777777777777777777777777


Q ss_pred             ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCcccc
Q 009079          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS  221 (544)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  221 (544)
                      |+.|.++.|.+.+++.. +. .-.|..|+++.|.+..+|-.|..+++|++|-+.+|.+..
T Consensus       191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            77777777776666554 22 234566666666666666666666666666666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.37  E-value=6.4e-14  Score=125.33  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             cCcCCCEEEcCCCccccC-----CccccCCCCceEEEecCCcccc----ccchhhcCccccceEEcCCCcCCC-----Cc
Q 009079          135 RCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MP  200 (544)
Q Consensus       135 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~  200 (544)
                      +-+.|+++.+..|.+..-     ...+...+.|+.+.+..|.+..    +....+..++.|+.|++.+|.++.     +.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            345666666666655522     2334555666777666665541    223346667777777777776642     33


Q ss_pred             ccccCCCceeEEEccCCcccc-----CCcCC-ccCCCCCEEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCc
Q 009079          201 ETIGSLSRLIRLDLHQNRILS-----IPSSI-SGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~~L~~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~  266 (544)
                      ..+..+++|+.+++++|.+..     +...+ ...+.|+.+.+.+|.++     .+...+...|.|..|++++|.+.
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            556777788888888877661     11122 23678888888888777     22334556788888888888873

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=4.7e-13  Score=112.58  Aligned_cols=125  Identities=30%  Similarity=0.420  Sum_probs=39.6

Q ss_pred             hhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079          399 LSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (544)
Q Consensus       399 ~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (544)
                      +.++..+++|+|.+|.|+.+..  ++ .+.+|+.|++++|.|..+.  .+..++.|+.|++++|.++.+.......+|+|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3445566777777777766543  23 4567777777777777663  36666777777777777766643211346677


Q ss_pred             ceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCCc----ccccceeeeEec
Q 009079          478 QELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKS  527 (544)
Q Consensus       478 ~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~  527 (544)
                      +.|++++|+|..+.  ..+..+++|+.|++.+|+++.-+.    .+..+|+|+.||
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77777777666442  234456777777777777664332    256666676666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=3.3e-13  Score=113.54  Aligned_cols=111  Identities=23%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             CCCCCCEEECCCCCCCcCCCCccC-CCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcccc-CCCCCCe
Q 009079          425 SLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRI  502 (544)
Q Consensus       425 ~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~-~~~~L~~  502 (544)
                      ++..+++|++++|.|..+..  +. .+.+|+.|++++|.++.+.  .+..+++|+.|++++|.|+++++.+. .+|+|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            34455556666665555422  32 3455566666666555543  24555566666666666655544332 3556666


Q ss_pred             eecCCCCCCCCC--cccccceeeeEeccCCccccccccc
Q 009079          503 LDLSQNSLQSIP--EVTYIFVMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       503 L~l~~n~l~~l~--~~l~~~~~L~~l~l~~n~~~~~~~~  539 (544)
                      |++++|++..+.  ..+..+++|+.|++.||++.....|
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y  131 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY  131 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH
Confidence            666666555332  2245555666666666666555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.32  E-value=2.3e-12  Score=127.36  Aligned_cols=178  Identities=31%  Similarity=0.456  Sum_probs=150.2

Q ss_pred             cCccEEecccCcccchhHhhcCCC-CCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      +.++.|++..+.+.+++....... +|+.|++++|++..++..+..+++|+.|++++|++.+++......+.|+.|++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            568999999999998888887775 9999999999999888888899999999999999999887777889999999999


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (544)
                      |++..+|........|+++.++++.....+..+.++.++..+.+..+++..+.. .++.++.++.|++++|.+..++. +
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~-~  273 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS-L  273 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-c
Confidence            999999877667777999999999766666778888888888888887776422 27777889999999999988876 8


Q ss_pred             cCCCceeEEEccCCccccCCc
Q 009079          204 GSLSRLIRLDLHQNRILSIPS  224 (544)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~l~~  224 (544)
                      +....++.++++++.+...+.
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccCccCEEeccCccccccch
Confidence            888999999999988775543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=3.1e-13  Score=124.44  Aligned_cols=210  Identities=20%  Similarity=0.221  Sum_probs=151.5

Q ss_pred             chhHhhcCCCCCCEEEcCCCCCCCcc--hhhhCCCCccEEEccCCcccc---CCccccccCCccEEEcCCCCCccCCc--
Q 009079           59 KLKEDLRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPS--  131 (544)
Q Consensus        59 ~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~--  131 (544)
                      ++..-=+++.+|+++.+.++.+...+  .....|++++.|++++|-+..   +......+++|+.|+++.|++.....  
T Consensus       112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence            44444567788888888888877665  367788889999998886653   33446788889999998888763322  


Q ss_pred             ccccCcCCCEEEcCCCccc--cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc--ccccCCC
Q 009079          132 SLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLS  207 (544)
Q Consensus       132 ~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~  207 (544)
                      .-..+++|+.|.++.|++.  .+...+..+|+|+.|++.+|...-+......-+..|++|++++|.+.+.+  ...+.++
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            1235678888888888877  44455667889999999888544344444556678889999998887766  5677888


Q ss_pred             ceeEEEccCCccccC--CcC-----CccCCCCCEEEccCCcCCcCch--hhhCCCCCCEEECCCCcCccc
Q 009079          208 RLIRLDLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALPA--ELGKLSKLGTLDLHSNQLKEY  268 (544)
Q Consensus       208 ~L~~L~l~~~~~~~l--~~~-----~~~~~~L~~l~l~~~~~~~l~~--~l~~~~~L~~L~l~~~~i~~~  268 (544)
                      .|+.|+++.+++..+  |+.     ...+++|+.|++..|.+.++++  .+..+++|+.+.+..+.++.-
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            899999998888844  322     3556788888888888865543  356677788887777776643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=3.1e-12  Score=126.48  Aligned_cols=194  Identities=33%  Similarity=0.485  Sum_probs=103.4

Q ss_pred             EEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccC-CccEEEcCCCCCccCCcccccCcCCCEEEcCCCccc
Q 009079           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT  150 (544)
Q Consensus        72 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  150 (544)
                      .++...+.+..-...+.....++.|++.++.++.++....... +|+.|++++|.+..++..++.+++|+.|++++|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            3444444442222233334455555555555555554444443 555555555555555444555555555555555555


Q ss_pred             cCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCC
Q 009079          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (544)
Q Consensus       151 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~  230 (544)
                      .++...+..+.|+.|+++++.+..++.. ......|+++.+++|.+...+..+..+..+..+.+.++++..++..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            5554444555555555555555555442 122333555555555444444555555555555555555555555555556


Q ss_pred             CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc
Q 009079          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       231 ~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~  267 (544)
                      .++.+++++|.+..++. +....+++.++++++.+..
T Consensus       256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ccceecccccccccccc-ccccCccCEEeccCccccc
Confidence            66666666666665554 5556666666666655543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=1.2e-12  Score=114.73  Aligned_cols=207  Identities=25%  Similarity=0.278  Sum_probs=128.1

Q ss_pred             hhHhhcCCCCCCEEEcCCCC--CC-------CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC
Q 009079           60 LKEDLRNLPLLTVLNVSHNK--LS-------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP  130 (544)
Q Consensus        60 ~~~~~~~~~~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~  130 (544)
                      +...+.-+..|..|..+...  +.       .+|-.+.-+++|+.+.++.|.-.++.+....-+.|+++.+....+...|
T Consensus       174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~  253 (490)
T KOG1259|consen  174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP  253 (490)
T ss_pred             hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc
Confidence            33344455566666665432  11       1222344456666666666655555433334455666666554332111


Q ss_pred             ------------------------cccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCcccc
Q 009079          131 ------------------------SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML  186 (544)
Q Consensus       131 ------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  186 (544)
                                              .....++.|+++++++|.++.+.+++.-.++++.|++++|.+..+..  ++.+++|
T Consensus       254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L  331 (490)
T KOG1259|consen  254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQL  331 (490)
T ss_pred             cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccc
Confidence                                    11223456777788888777777777777788888888877776655  6777777


Q ss_pred             ceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc--hhhhCCCCCCEEECCCCc
Q 009079          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQ  264 (544)
Q Consensus       187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~  264 (544)
                      +.|++++|.++.+..+-..+-+++.|.+++|.+..+ ..+..+.+|..|++++|+|..+.  ..++++|.|+++.+.+|.
T Consensus       332 ~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  332 QLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            777777777776666556666777777777777655 44566667777777777777543  236677777777777776


Q ss_pred             Ccccc
Q 009079          265 LKEYC  269 (544)
Q Consensus       265 i~~~~  269 (544)
                      +..++
T Consensus       411 l~~~v  415 (490)
T KOG1259|consen  411 LAGSV  415 (490)
T ss_pred             ccccc
Confidence            65443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=1.8e-12  Score=113.64  Aligned_cols=132  Identities=33%  Similarity=0.391  Sum_probs=116.8

Q ss_pred             ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCC
Q 009079          183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS  262 (544)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~  262 (544)
                      ...|+++++++|.++.+..++.-.|.++.|++++|.+..+.. ++.+++|+.|++++|.+..+..+-.++-++++|.+++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            456899999999999999999999999999999999998844 8889999999999999998877777889999999999


Q ss_pred             CcCcccchhcccccccEEEccCCCCCCCCc--cccCCCCcceeccCCCCCccccc
Q 009079          263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRS  315 (544)
Q Consensus       263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~~~~~~~  315 (544)
                      |.+..+.......+|.+||+++|++..+..  .++++|.|+.+.+.+|++..+++
T Consensus       362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            999988887777889999999999988543  48999999999999999876654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=2.5e-13  Score=129.06  Aligned_cols=194  Identities=32%  Similarity=0.465  Sum_probs=169.2

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~   87 (544)
                      .......|++.|.+..+|.+..+             +..|+.+.+..|.+..+|..+.++..|+.++|+.|+++.+|..+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l  140 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL  140 (722)
T ss_pred             ccchhhhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence            34456789999999999987766             46699999999999999999999999999999999999999988


Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEe
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  167 (544)
                      ..++ |+.|-+++|+++.+|..++...+|..|+.+.|.+..+|..++.+.+|+.|.++.|.+..+|+.+. .-.|..||+
T Consensus       141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDf  218 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDF  218 (722)
T ss_pred             hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeec
Confidence            8775 99999999999999999999999999999999999999999999999999999999999999888 457999999


Q ss_pred             cCCccccccchhhcCccccceEEcCCCcCCCCccccc---CCCceeEEEccCC
Q 009079          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQN  217 (544)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~---~~~~L~~L~l~~~  217 (544)
                      +.|++..++.. |.++..|++|-+.+|.+..-|..+-   ...--++|+..-+
T Consensus       219 ScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  219 SCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ccCceeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            99999999987 9999999999999999986654332   2222366666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=5.6e-12  Score=116.29  Aligned_cols=200  Identities=18%  Similarity=0.179  Sum_probs=126.3

Q ss_pred             ecCccEEecccCcccchh--HhhcCCCCCCEEEcCCCCCCCc---chhhhCCCCccEEEccCCccccCCcc--ccccCCc
Q 009079           44 AVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDE--IGSATAL  116 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L  116 (544)
                      .++|+.+.+..+.+...+  +....|++++.||++.|-+..+   ......+|+|+.|+++.|.+......  -..+++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            456777777777766444  3666777777777777765533   23446677777777777766533221  2356677


Q ss_pred             cEEEcCCCCCc--cCCcccccCcCCCEEEcCCCc-cccCCccccCCCCceEEEecCCccccccc-hhhcCccccceEEcC
Q 009079          117 VKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIAS  192 (544)
Q Consensus       117 ~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~  192 (544)
                      +.|.+++|+++  .+......+++|+.|.+..|. +..-......++.|++|++++|.+.+.+. ...+.++.|..|.++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            77777777776  333445567777777777773 22222233445677777777777665443 235666777777777


Q ss_pred             CCcCCCC--ccc-----ccCCCceeEEEccCCccccCC--cCCccCCCCCEEEccCCcCC
Q 009079          193 KNLLNGM--PET-----IGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS  243 (544)
Q Consensus       193 ~~~~~~~--~~~-----l~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~l~l~~~~~~  243 (544)
                      .+.+.++  |+.     ...+++|++|++..|++...+  ..+...++|+.+.+..+.+.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777543  222     355678888888888886443  23455667777777776665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.02  E-value=3.6e-11  Score=118.90  Aligned_cols=242  Identities=28%  Similarity=0.357  Sum_probs=131.8

Q ss_pred             CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (544)
Q Consensus        66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (544)
                      .+..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|+++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            34444444455555544333345555666666666666555444555666666666666665552 34445556666666


Q ss_pred             CCccccCCccccCCCCceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc
Q 009079          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS  224 (544)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~  224 (544)
                      +|.+..+. .+..+..|+.++++++.+..+.. . ...+.+++.+.+.+|.+..+ ..+..+..+..+++..+.++.+. 
T Consensus       149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~-  224 (414)
T KOG0531|consen  149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLE-  224 (414)
T ss_pred             cCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceecc-
Confidence            66665552 33345666666666666665544 2 34555666666666665544 22233333444455555555441 


Q ss_pred             CCccCC--CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCC----CCc-cccCC
Q 009079          225 SISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKM  297 (544)
Q Consensus       225 ~~~~~~--~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~----l~~-~l~~~  297 (544)
                      .+....  .|+.++++++++..++..+..+..+..+++.++.+..+........+..+...++.+..    ... .....
T Consensus       225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (414)
T KOG0531|consen  225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA  304 (414)
T ss_pred             CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence            122222  26667777777666555566667777777777776665555444445555555554442    111 14556


Q ss_pred             CCcceeccCCCCCcc
Q 009079          298 TTLRKLLLTGNPLRT  312 (544)
Q Consensus       298 ~~L~~L~l~~~~~~~  312 (544)
                      +.++.+.+.+++...
T Consensus       305 ~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  305 PTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccCcccc
Confidence            677777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=5.9e-11  Score=117.37  Aligned_cols=240  Identities=26%  Similarity=0.356  Sum_probs=169.9

Q ss_pred             ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      +..++.++++.+.+..+...+..+++|+.+++.+|.+..+...+..+++|++|++++|.|+.+ ..+..++.|+.|++++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            455777778888777755668888899999999988887765577888999999999988877 3456777799999999


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (544)
                      |.++.+. .+..++.|+.++++++.+..+... ...+.+++.+.+.++.+..+..  +..+..+..+++..+.+..+.. 
T Consensus       150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~-  225 (414)
T KOG0531|consen  150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG-  225 (414)
T ss_pred             Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence            9888774 455688889999999988877543 4677888889998888876655  4444555555777777765522 


Q ss_pred             ccCCC--ceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch------hccc
Q 009079          203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV------EACQ  274 (544)
Q Consensus       203 l~~~~--~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~------~~~~  274 (544)
                      +....  +|+.++++++++...+..+..+..+..+++.++.+..+.. +...+.+..+....+.+.....      ....
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAA  304 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhcccccccc
Confidence            22223  3888999998888776677788888888888888875532 4555566666666665542211      1222


Q ss_pred             ccccEEEccCCCCCC
Q 009079          275 LRLSVLDLSNNSLSG  289 (544)
Q Consensus       275 ~~L~~L~l~~~~l~~  289 (544)
                      ..+..+.+..+....
T Consensus       305 ~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  305 PTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccCcccc
Confidence            336666666665544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=5.3e-10  Score=77.30  Aligned_cols=59  Identities=39%  Similarity=0.584  Sum_probs=29.2

Q ss_pred             CCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCc
Q 009079          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ  486 (544)
Q Consensus       428 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~  486 (544)
                      +|++|++++|++..++...|.++++|++|++++|.++.+.+.+|..+++|+.|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44455555555554444444445555555555554444444444555555555554443

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.8e-09  Score=114.22  Aligned_cols=123  Identities=28%  Similarity=0.381  Sum_probs=64.6

Q ss_pred             ccEEecccCcccchhHhhcCCCCCCEEEcCCCC--CCCcch-hhhCCCCccEEEccCC-ccccCCccccccCCccEEEcC
Q 009079           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCS  122 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~  122 (544)
                      .|++.+.++.+..++... .+++|++|-+..+.  +..++. .|..++.|++||+++| .+..+|..++.+-+|++|+++
T Consensus       525 ~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             eeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            555555555555444332 23355555555553  333332 3555666666666655 445556556666666666666


Q ss_pred             CCCCccCCcccccCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCC
Q 009079          123 SNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGN  170 (544)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~  170 (544)
                      ++.++.+|..++++..|.+|++..+... .++.....+++|++|.+...
T Consensus       604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            6666666655666666666665555433 22233333555665555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=6.6e-10  Score=76.82  Aligned_cols=61  Identities=39%  Similarity=0.633  Sum_probs=49.4

Q ss_pred             CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  463 (544)
                      |+|++|++++|+++.++...|..+++|++|++++|++..++..+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5678888888888888777788888888888888888888777788888888888888754

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=2e-09  Score=113.81  Aligned_cols=241  Identities=23%  Similarity=0.282  Sum_probs=150.5

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc--ccchhH-hhcCCCCCCEEEcCCC-CCCCcch
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPA   85 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~   85 (544)
                      .++...+-++++..++...-              +++|++|-+.++.  +..++. .|..++.|++||+++| .+..+|.
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~--------------~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSE--------------NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             heeEEEEeccchhhccCCCC--------------CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            44555666666554442221              4568888888885  555554 5778999999999976 4678899


Q ss_pred             hhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccccC---CccccCCCC
Q 009079           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSL---PEDLADCSK  161 (544)
Q Consensus        86 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~  161 (544)
                      .++.+-+|++|+++++.+.++|..+..+++|.+|++..+... .++.....+++|++|.+.......-   -..+..+.+
T Consensus       590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            999999999999999999999999999999999999876543 3444455588999998877653211   123344555


Q ss_pred             ceEEEecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CC-----cc-CC
Q 009079          162 MSKLDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----SG-CC  230 (544)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~-----~~-~~  230 (544)
                      |+.+....... .+... +..+.+|.    .+.+.++.....+..+..+.+|+.|.+.++.+..... ..     .. ++
T Consensus       670 L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~  747 (889)
T KOG4658|consen  670 LENLSITISSV-LLLED-LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP  747 (889)
T ss_pred             hhhheeecchh-HhHhh-hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence            55555533332 11111 22233333    3333334444455667778888888888877753211 10     11 23


Q ss_pred             CCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCc
Q 009079          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       231 ~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~  266 (544)
                      ++..+.+.++.....+.+....|+|+.|.+..+...
T Consensus       748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~  783 (889)
T KOG4658|consen  748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL  783 (889)
T ss_pred             HHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence            444444444444444455556678888888776544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=2.5e-10  Score=112.01  Aligned_cols=131  Identities=28%  Similarity=0.298  Sum_probs=110.5

Q ss_pred             CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  458 (544)
                      +..|...++++|.+..+..++.-++.++.|+|+.|++++..  .+..|+.|++|+|++|++..++.....+|. |..|.+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence            34788899999999988888999999999999999999876  578999999999999999988877777776 999999


Q ss_pred             CCcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCC
Q 009079          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      ++|-++.+.  .++++.+|+-||+++|-|..-.  .-++.+..|+.|+|.||++-+-|
T Consensus       240 rnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  240 RNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999887774  3788899999999999776321  34577889999999999987544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.68  E-value=6.6e-10  Score=109.13  Aligned_cols=129  Identities=28%  Similarity=0.270  Sum_probs=108.2

Q ss_pred             CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeec
Q 009079          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (544)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  483 (544)
                      .|...++++|.++..+. .+.-++.|+.|+|++|++.+..  .+..|++|+.|||+.|.+..+..-....|. |..|+++
T Consensus       165 ~L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            46777778887776543 3677899999999999999875  489999999999999999888766566666 9999999


Q ss_pred             CCcccccCccccCCCCCCeeecCCCCCCCC--CcccccceeeeEeccCCccccccc
Q 009079          484 RMQLREAPTDILRLQQLRILDLSQNSLQSI--PEVTYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       484 ~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l--~~~l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      +|.++++ .++.++.+|+.||++.|-+..-  .+.++.+..|+.|.+.||++.+.-
T Consensus       241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999988 5678999999999999988743  233899999999999999998643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.66  E-value=2.8e-09  Score=92.54  Aligned_cols=91  Identities=25%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             CCceeEEEccCCccc-----cCCcCCccCCCCCEEEccCCcCC----cCc-------hhhhCCCCCCEEECCCCcCcccc
Q 009079          206 LSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS----ALP-------AELGKLSKLGTLDLHSNQLKEYC  269 (544)
Q Consensus       206 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~l~l~~~~~~----~l~-------~~l~~~~~L~~L~l~~~~i~~~~  269 (544)
                      +..++.+++|+|.+.     .+...+.+-.+|+..++++-...    .++       .++-+||+|+.+++++|.+..-.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            445556666665554     12223344455666665544322    122       23567777777777777664211


Q ss_pred             hhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccc
Q 009079          270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (544)
Q Consensus       270 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~  313 (544)
                      +..                 +-..+++...|.+|.+++|.+..+
T Consensus       109 ~e~-----------------L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238         109 PEE-----------------LGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             chH-----------------HHHHHhcCCCceeEEeecCCCCcc
Confidence            110                 112355667777777777776544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.62  E-value=5.2e-08  Score=84.88  Aligned_cols=161  Identities=20%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             HHHHhhhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCccc----c-------hhHhhcCCCCCC
Q 009079            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----K-------LKEDLRNLPLLT   71 (544)
Q Consensus         4 ~~~~~~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~-------~~~~~~~~~~L~   71 (544)
                      .+.....+..+|||+|.++ .....++.....         -.+|+..+++.--..    +       +.+++.+||+|+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~---------~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIAN---------VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhh---------hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            4455778889999999887 333344433333         356777777763222    2       335677888888


Q ss_pred             EEEcCCCCCC-Cc----chhhhCCCCccEEEccCCccccCCc--------------cccccCCccEEEcCCCCCccCCc-
Q 009079           72 VLNVSHNKLS-EL----PAAIGELHMLKSLDVSFNSIMKIPD--------------EIGSATALVKFDCSSNQLKELPS-  131 (544)
Q Consensus        72 ~L~l~~~~~~-~l----~~~~~~~~~L~~L~l~~~~l~~l~~--------------~~~~~~~L~~L~l~~~~~~~~~~-  131 (544)
                      .+++++|.+. ..    .+.+++-..|++|.+++|.+.-+..              ....-|.|+.+.+..|++...+. 
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence            8888888876 22    2366777888888888887763321              12344667777777776664442 


Q ss_pred             ----ccccCcCCCEEEcCCCccccC------CccccCCCCceEEEecCCccc
Q 009079          132 ----SLGRCLNLSDFKASNNCITSL------PEDLADCSKMSKLDVEGNKLT  173 (544)
Q Consensus       132 ----~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~  173 (544)
                          .+..-..|+.+.+..|.+..-      -..+..+++|+.|++.+|.++
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence                122224666666666665511      112344556666666666555

>PLN03150 hypothetical protein; Provisional

Probab=98.61  E-value=1.3e-07  Score=98.18  Aligned_cols=105  Identities=22%  Similarity=0.315  Sum_probs=47.9

Q ss_pred             CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (544)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  484 (544)
                      ++.|+|++|.+....+..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.++...+..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            34444444444443333344444555555555444432222344444555555555544444444444555555555555


Q ss_pred             Cccc-ccCccccC-CCCCCeeecCCCC
Q 009079          485 MQLR-EAPTDILR-LQQLRILDLSQNS  509 (544)
Q Consensus       485 n~l~-~i~~~~~~-~~~L~~L~l~~n~  509 (544)
                      |.++ .+|..+.. ..++..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            5444 44444333 2234444555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2e-09  Score=94.70  Aligned_cols=171  Identities=19%  Similarity=0.161  Sum_probs=81.2

Q ss_pred             CccEEecccCccc--chhHhhcCCCCCCEEEcCCCCCC-CcchhhhCCCCccEEEccCC-ccccC--CccccccCCccEE
Q 009079           46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKI--PDEIGSATALVKF  119 (544)
Q Consensus        46 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~l~~l--~~~~~~~~~L~~L  119 (544)
                      .|+++|++...|+  .+-..++.|++|+.|.+.++++. .+...+.+..+|+.|+++.+ .++..  .-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4666666666555  33345566666666666666655 33345555666666666665 34422  1125566666666


Q ss_pred             EcCCCCCc--cCCccccc-CcCCCEEEcCCCccc----cCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEc
Q 009079          120 DCSSNQLK--ELPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA  191 (544)
Q Consensus       120 ~l~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  191 (544)
                      +++.|.+.  .+...+.+ -++|..|+++|+.-.    .+..-..++++|.+|+++++. ++.--...+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            66666543  11111111 235555555554321    111123445555555555542 22222222444455555555


Q ss_pred             CCCcCCC--CcccccCCCceeEEEccC
Q 009079          192 SKNLLNG--MPETIGSLSRLIRLDLHQ  216 (544)
Q Consensus       192 ~~~~~~~--~~~~l~~~~~L~~L~l~~  216 (544)
                      +.|....  .--.+...|+|.+|++.+
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEecc
Confidence            5543210  001234445555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=7.5e-10  Score=97.37  Aligned_cols=173  Identities=27%  Similarity=0.258  Sum_probs=88.0

Q ss_pred             ccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhc
Q 009079          277 LSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR  354 (544)
Q Consensus       277 L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (544)
                      ++++|++...++.  +...+..|.+|+.+.+.++.+..                                          
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------------------------------------------  224 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------------------------------------------  224 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------------------------------------------
Confidence            6777777766665  44446777788877777776532                                          


Q ss_pred             ccccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCC--ChhhhcCCCCcEEEccCCCCCC--CCHHHHhCCCCC
Q 009079          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQEL--PPELSSCASLQTLILSRNKIKD--WPDAILTSLSSL  429 (544)
Q Consensus       355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l--~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L  429 (544)
                                      .+...+....+|+.++++.|. ++..  .-.+.+|..|.+|+++.|.+..  +....-.--++|
T Consensus       225 ----------------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  225 ----------------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             ----------------HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence                            122233445556666666653 4442  1224566666666666665432  111111112556


Q ss_pred             CEEECCCCCC----CcCCCCccCCCCCcceEecCCc-ccCCCCCCCCCCCccCceEeecCC-ccc-ccCccccCCCCCCe
Q 009079          430 SCLKLDNNPL----RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLR-EAPTDILRLQQLRI  502 (544)
Q Consensus       430 ~~L~l~~n~i----~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n-~l~-~i~~~~~~~~~L~~  502 (544)
                      +.|+++|++-    ..+. .-.+.||+|..||++.| .++.-....|-.++.|+.|.+++| .|. .---.+...|+|.+
T Consensus       289 ~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y  367 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY  367 (419)
T ss_pred             hhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence            6666666541    1111 11245666666666655 233322233445566666666666 232 11112334566666


Q ss_pred             eecCCC
Q 009079          503 LDLSQN  508 (544)
Q Consensus       503 L~l~~n  508 (544)
                      |++.+|
T Consensus       368 Ldv~g~  373 (419)
T KOG2120|consen  368 LDVFGC  373 (419)
T ss_pred             EEeccc
Confidence            666655

>PLN03150 hypothetical protein; Provisional

Probab=98.57  E-value=9.2e-08  Score=99.20  Aligned_cols=108  Identities=25%  Similarity=0.245  Sum_probs=94.5

Q ss_pred             CCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-ccCccccCCCCCCeeecC
Q 009079          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLS  506 (544)
Q Consensus       428 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~  506 (544)
                      .++.|+|++|.+.......+..+++|+.|++++|.+....+..++.+++|+.|+|++|.+. .+|..+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999998765666899999999999999999888888999999999999999998 789999999999999999


Q ss_pred             CCCCC-CCCcccccc-eeeeEeccCCccccc
Q 009079          507 QNSLQ-SIPEVTYIF-VMLQKKSINTELVDK  535 (544)
Q Consensus       507 ~n~l~-~l~~~l~~~-~~L~~l~l~~n~~~~  535 (544)
                      +|+++ .+|..+... ..+..+++.+|...+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            99998 778776653 467788999887554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.52  E-value=1.8e-08  Score=78.35  Aligned_cols=115  Identities=24%  Similarity=0.405  Sum_probs=88.2

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhc-CCCCCCEEEcCCCCCCCcchh
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAA   86 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~   86 (544)
                      +..++.+|||++++..++.. .+.+..         ...|..+++++|.+.++|+.|. +++.++.+++++|.++++|..
T Consensus        26 akE~h~ldLssc~lm~i~da-vy~l~~---------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE   95 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADA-VYMLSK---------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE   95 (177)
T ss_pred             HHHhhhcccccchhhHHHHH-HHHHhC---------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH
Confidence            44677888888888877643 333333         4668888888888888887554 556888888888888888888


Q ss_pred             hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcc
Q 009079           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS  132 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  132 (544)
                      +..++.|+.|+++.|.+...|+.+..+.++-.|+..++....++..
T Consensus        96 ~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            8888888888888888888888777788888888888777666543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.49  E-value=4.5e-09  Score=96.93  Aligned_cols=132  Identities=21%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             cCCCCcEEEccCCC-CCCC-CHHHHhCCCCCCEEECCCCC-CCcCCCCc-cCCCCCcceEecCCcccCCCC-C-CCCCCC
Q 009079          401 SCASLQTLILSRNK-IKDW-PDAILTSLSSLSCLKLDNNP-LRQVPSDG-FKDIPMLQILDLSYNIASLPE-N-PPFSSL  474 (544)
Q Consensus       401 ~~~~L~~L~l~~~~-l~~~-~~~~l~~~~~L~~L~l~~n~-i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~-~-~~~~~l  474 (544)
                      .+..|+.++.+++. +++. ..+.-..+++|+.+.+.+|+ +++..... -++++.|+.+++.++....-. . ..-.+|
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            44555555555542 3321 12222345556666555555 33322111 134555555555555221111 1 111235


Q ss_pred             ccCceEeecCC-ccccc-----CccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcc
Q 009079          475 PHLQELYLRRM-QLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTEL  532 (544)
Q Consensus       475 ~~L~~L~ls~n-~l~~i-----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~  532 (544)
                      +.|+.|.+++| .|+.-     ...-.....|+.+.+.+|+..  ...+.+..++.|+++++.+++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            56666666655 23311     122223445556666666554  234445555666665555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.39  E-value=4.4e-07  Score=75.74  Aligned_cols=124  Identities=22%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (544)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  484 (544)
                      =+++++.+.++..+.... .-......+++++|.+..+..  |..++.|..|.+++|+|+.+.+.--..+++|+.|.+.+
T Consensus        21 e~e~~LR~lkip~ienlg-~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLG-ATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccccchhhcc-ccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            456677766655443210 123567788888888877643  78888899999999988888887666678889999999


Q ss_pred             CcccccC--ccccCCCCCCeeecCCCCCCCC----CcccccceeeeEeccCCc
Q 009079          485 MQLREAP--TDILRLQQLRILDLSQNSLQSI----PEVTYIFVMLQKKSINTE  531 (544)
Q Consensus       485 n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l----~~~l~~~~~L~~l~l~~n  531 (544)
                      |.|..+.  ..+..||.|+.|.+-+|+++.-    ...++.+|+|+.||+.+-
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8887552  3355688899999988888843    345788888888887653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.37  E-value=6.5e-07  Score=74.78  Aligned_cols=106  Identities=25%  Similarity=0.314  Sum_probs=71.9

Q ss_pred             CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC-CCCCCCCccCceEe
Q 009079          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELY  481 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  481 (544)
                      .....+||++|.+..++.  |..++.|.+|.++.|+|+.+...--..+|.|+.|.+.+|.+..++ ...++.||+|+.|.
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345667777777766554  567778888888888887776655556677888888887655543 23467778888888


Q ss_pred             ecCCcccccC----ccccCCCCCCeeecCCCCC
Q 009079          482 LRRMQLREAP----TDILRLQQLRILDLSQNSL  510 (544)
Q Consensus       482 ls~n~l~~i~----~~~~~~~~L~~L~l~~n~l  510 (544)
                      +-+|.+..-.    ..+..+|+|+.||+.+-..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8777666321    2345677888888776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.32  E-value=4.1e-08  Score=76.37  Aligned_cols=109  Identities=19%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             CCEEEcCCCCCCCcchh---hhCCCCccEEEccCCccccCCcccc-ccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079           70 LTVLNVSHNKLSELPAA---IGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (544)
Q Consensus        70 L~~L~l~~~~~~~l~~~---~~~~~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (544)
                      +..+++++|++-.++++   +....+|+.+++++|.+.++|..|. +.+.+++|++..|.++++|..+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            34445555554444332   2344555556666666666655543 3345666666666666666666666666666666


Q ss_pred             CCccccCCccccCCCCceEEEecCCccccccch
Q 009079          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (544)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  178 (544)
                      .|.+...|..+..+.++.+|+..++....++..
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            666666666655566666666666665555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=2.8e-07  Score=81.46  Aligned_cols=196  Identities=19%  Similarity=0.235  Sum_probs=87.6

Q ss_pred             CCCCCCEEEcCCCCCCCcch---hhhCCCCccEEEccCCccccCCccc-cccCCccEEEcCCCCCc--cCCcccccCcCC
Q 009079           66 NLPLLTVLNVSHNKLSELPA---AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLK--ELPSSLGRCLNL  139 (544)
Q Consensus        66 ~~~~L~~L~l~~~~~~~l~~---~~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L  139 (544)
                      .++.++++|+.+|.+++..+   .+.++|.|+.|+++.|++....+.. ....+|+.|-+.|+.+.  .....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            44556666666666553322   3355666666666665554221222 23345555655555443  332334445555


Q ss_pred             CEEEcCCCccccCC---ccccCC-CCceEEEecCCcccc-ccc-hhhcCccccceEEcCCCcCCCC--cccccCCCceeE
Q 009079          140 SDFKASNNCITSLP---EDLADC-SKMSKLDVEGNKLTV-LSN-NLIASWTMLTELIASKNLLNGM--PETIGSLSRLIR  211 (544)
Q Consensus       140 ~~L~l~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~  211 (544)
                      +.|.++.|....+.   ...... +.+++|..-+|.... ... ......+++..+-+..+.+.+.  ......++.+-.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            55555555332110   011111 133333333333220 000 0012234455555555544322  123344455556


Q ss_pred             EEccCCccccCC--cCCccCCCCCEEEccCCcCC-cCc------hhhhCCCCCCEEECC
Q 009079          212 LDLHQNRILSIP--SSISGCCSLAEFYMGNNALS-ALP------AELGKLSKLGTLDLH  261 (544)
Q Consensus       212 L~l~~~~~~~l~--~~~~~~~~L~~l~l~~~~~~-~l~------~~l~~~~~L~~L~l~  261 (544)
                      |+++.+.+....  ..+.+++.|+.+.+.++.+. .+.      -.++.+++++.|+=+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            666666555321  34556666666666666554 111      014566677766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.31  E-value=5.4e-07  Score=56.69  Aligned_cols=41  Identities=32%  Similarity=0.523  Sum_probs=29.4

Q ss_pred             ccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCc
Q 009079          475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       475 ~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      ++|+.|++++|+|+.+|..+.++++|+.|++++|+++++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46777888888888777667778888888888888776653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.30  E-value=5e-06  Score=79.19  Aligned_cols=134  Identities=16%  Similarity=0.252  Sum_probs=90.4

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCC-CCCCChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEEC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKL  434 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l  434 (544)
                      ..++.|++++|.+..+|. +  .++|++|.+++|. ++.+|..+  .++|++|++++| .+..++       ++|+.|++
T Consensus        52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L  119 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEI  119 (426)
T ss_pred             cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEe
Confidence            678899999998888873 2  4579999999864 66677644  368999999998 555433       56888888


Q ss_pred             CCCCCCcCCCCccCCCCCcceEecCCcc-cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCC
Q 009079          435 DNNPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS  509 (544)
Q Consensus       435 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~  509 (544)
                      .++....+..    -.++|+.|.+.+++ ....... -.-.++|+.|++++|....+|..+.  .+|+.|+++.+.
T Consensus       120 ~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        120 KGSATDSIKN----VPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             CCCCCccccc----CcchHhheeccccccccccccc-cccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence            7766544321    12478888885432 1111111 0122689999999997666655433  589999988763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.26  E-value=1.2e-06  Score=90.81  Aligned_cols=102  Identities=18%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC--cccccCcCCCEEEcCCCccccCC-------ccccC
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLAD  158 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~  158 (544)
                      .++++|.+||+|+++++.+ ..++.+++|+.|.+.+-.+..-.  ..+.++++|+.||+|.......+       +.-..
T Consensus       170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            3444444444444444444 33444444444444433333211  13344455555555443322111       12233


Q ss_pred             CCCceEEEecCCcccc-ccchhhcCccccceEE
Q 009079          159 CSKMSKLDVEGNKLTV-LSNNLIASWTMLTELI  190 (544)
Q Consensus       159 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~  190 (544)
                      +|+|+.||.+++.+.. +....+...++|+.+.
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            5666666666665552 2222233334444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.23  E-value=2.3e-06  Score=69.76  Aligned_cols=120  Identities=15%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (544)
Q Consensus       398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (544)
                      +|..+.+|+.+.+.. .+..+....|..+++|+.+.+.++ +..+...+|.++++|+.+.+.+ .+..+....|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            356666777777764 456666666777777777777664 6666666677777777777765 4555566667777777


Q ss_pred             ceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC-Ccccccceee
Q 009079          478 QELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEVTYIFVML  523 (544)
Q Consensus       478 ~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L  523 (544)
                      +.+++..+ ++.++.. +.++ .|+.+.+.+ .+..+ ...+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77777654 5444333 3334 777777765 44444 3345555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=2.8e-06  Score=53.46  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=22.3

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l   83 (544)
                      +|++|++++|.++++|..++++++|+.|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            46666666666666665566666666666666666554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=1.1e-06  Score=77.75  Aligned_cols=200  Identities=20%  Similarity=0.210  Sum_probs=126.7

Q ss_pred             CCCCEEEcCCCCCCCcch--hh-hCCCCccEEEccCCcccc---CCccccccCCccEEEcCCCCCccCCccc-ccCcCCC
Q 009079           68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS  140 (544)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~--~~-~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~  140 (544)
                      +-++.+-+.++.+....+  .| ..+..++.+++.+|.+++   +...+.++|.|++|+++.|++....+.. .-..+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345566666777765533  23 568899999999999984   4344789999999999999887333333 2456899


Q ss_pred             EEEcCCCccc--cCCccccCCCCceEEEecCCcccc--ccchhhcCc-cccceEEcCCCcCC---CCcccccCCCceeEE
Q 009079          141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTV--LSNNLIASW-TMLTELIASKNLLN---GMPETIGSLSRLIRL  212 (544)
Q Consensus       141 ~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~---~~~~~l~~~~~L~~L  212 (544)
                      +|-+.+..+.  .....+..++.+++|.++.|.+..  ++....... +.++.+.+..|...   .+...-.-++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9988887654  555566777888888888775442  222222222 24555655555432   111112234566666


Q ss_pred             EccCCccccC--CcCCccCCCCCEEEccCCcCCcCc--hhhhCCCCCCEEECCCCcCcc
Q 009079          213 DLHQNRILSI--PSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       213 ~l~~~~~~~l--~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~i~~  267 (544)
                      -+..+.+...  .......+.+..|+++.+.+.++.  .++.+++.|..|.++.+.+.+
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            6766666533  234455566667777777777553  346777888888777776653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=2.6e-06  Score=88.25  Aligned_cols=129  Identities=25%  Similarity=0.194  Sum_probs=77.4

Q ss_pred             CCCCEEEcCCCCCC--Ccchhh-hCCCCccEEEccCCccc--cCCccccccCCccEEEcCCCCCccCCcccccCcCCCEE
Q 009079           68 PLLTVLNVSHNKLS--ELPAAI-GELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF  142 (544)
Q Consensus        68 ~~L~~L~l~~~~~~--~l~~~~-~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  142 (544)
                      .+|++|++++...-  ..+..+ ..+|.|++|.+.+-.+.  ++.....++++|..||+++++++.+ ..++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            46777777764422  333333 35677777777765443  3344456677777777777777766 566777777777


Q ss_pred             EcCCCccccCC--ccccCCCCceEEEecCCcccccc---c---hhhcCccccceEEcCCCcCC
Q 009079          143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLS---N---NLIASWTMLTELIASKNLLN  197 (544)
Q Consensus       143 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~---~---~~~~~~~~L~~L~l~~~~~~  197 (544)
                      .+.+-.++...  ..+..+++|+.||++........   .   ..-..+|.|+.|+.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            77776666322  34566777777777765433111   0   11223567777777766553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=6.2e-05  Score=71.89  Aligned_cols=74  Identities=14%  Similarity=0.280  Sum_probs=41.5

Q ss_pred             hcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCC-ccccCCccccccCCccEEEcCCC-CCccCCcccccCcCCCE
Q 009079           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD  141 (544)
Q Consensus        64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~  141 (544)
                      +..++++++|++++|.++.+|.   -..+|++|.+++| .++.+|..+  .++|++|++++| .+..+|.      +|++
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            4445667777777776666651   1234777777664 455555433  246677777666 4444442      3455


Q ss_pred             EEcCCCc
Q 009079          142 FKASNNC  148 (544)
Q Consensus       142 L~l~~~~  148 (544)
                      |++..+.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            5554443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.97  E-value=1.3e-05  Score=65.31  Aligned_cols=120  Identities=17%  Similarity=0.386  Sum_probs=71.6

Q ss_pred             hccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079          376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (544)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~  454 (544)
                      +..+.+|+.+.+.. .+..++. ++..+++|+.+.+..+ +..+....|..+++++.+.+.+ .+..++...|..+++|+
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            34456888888885 4555443 4788889999999884 7888888889998999999976 67777777888899999


Q ss_pred             eEecCCcccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCC
Q 009079          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR  501 (544)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~  501 (544)
                      .+++..+ +..+....|.++ .|+.+.+.. .+..++ ..|.++++|+
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9999876 777888889888 999999887 444444 3455577764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.90  E-value=9.3e-07  Score=82.02  Aligned_cols=286  Identities=16%  Similarity=0.115  Sum_probs=167.2

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc-cc--chhHhhcCCCCCCEEEcCCCC-CCCc--
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IE--KLKEDLRNLPLLTVLNVSHNK-LSEL--   83 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~-~~~l--   83 (544)
                      .++.+.+.|..  .++..-.+.+.        .+++++++|++.++. ++  .+...-..|++|++|++..|. +++.  
T Consensus       139 ~lk~LSlrG~r--~v~~sslrt~~--------~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  139 FLKELSLRGCR--AVGDSSLRTFA--------SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             ccccccccccc--cCCcchhhHHh--------hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence            56778888764  22222222111        127889999999984 33  233445688999999999854 5532  


Q ss_pred             chhhhCCCCccEEEccCC-ccc--cCCccccccCCccEEEcCCCCCc---cCCcccccCcCCCEEEcCCCccc---cCCc
Q 009079           84 PAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCIT---SLPE  154 (544)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~-~l~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~---~~~~  154 (544)
                      ..-...|++|++++++-| .++  .+-....+++.++.+...||.-.   .+...-+.+..+.++++.+|..-   .+..
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            223467999999999987 454  23334567777888877766322   22122234556666665555322   1111


Q ss_pred             cccCCCCceEEEecCCc-ccc-ccchhhcCccccceEEcCCCcC-CCC--cccccCCCceeEEEccCCccc---cCCcCC
Q 009079          155 DLADCSKMSKLDVEGNK-LTV-LSNNLIASWTMLTELIASKNLL-NGM--PETIGSLSRLIRLDLHQNRIL---SIPSSI  226 (544)
Q Consensus       155 ~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~-~~~--~~~l~~~~~L~~L~l~~~~~~---~l~~~~  226 (544)
                      .-..+..|+.++.+++. ++. .....-.++.+|+.+.++.|+. +..  ..--.++++|+.+++.++...   .+.+.-
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            23456778888877763 222 2223344567888888888763 221  122356778888888877554   244445


Q ss_pred             ccCCCCCEEEccCCcCC-c-----CchhhhCCCCCCEEECCCCcCccc---chhcccccccEEEccCCCCCC---CCccc
Q 009079          227 SGCCSLAEFYMGNNALS-A-----LPAELGKLSKLGTLDLHSNQLKEY---CVEACQLRLSVLDLSNNSLSG---LPPEI  294 (544)
Q Consensus       227 ~~~~~L~~l~l~~~~~~-~-----l~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~~L~~L~l~~~~l~~---l~~~l  294 (544)
                      ..|+.|+.+.++.+... +     +...-.....+..+.++++....-   ........|+.+++-++.-..   +.+.-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence            67888888888877543 1     122234567788888888765421   111222347777777764322   33334


Q ss_pred             cCCCCcceecc
Q 009079          295 GKMTTLRKLLL  305 (544)
Q Consensus       295 ~~~~~L~~L~l  305 (544)
                      .++|+++...+
T Consensus       449 ~~lp~i~v~a~  459 (483)
T KOG4341|consen  449 THLPNIKVHAY  459 (483)
T ss_pred             hhCccceehhh
Confidence            56677666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=5.5e-05  Score=66.72  Aligned_cols=81  Identities=23%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcch--
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--   85 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~--   85 (544)
                      ...++.|+|.|++|.+|.  ++..            .+.|+.|.|+-|.|+.+ +.+..|++|++|.|..|.|.++.+  
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~k------------Mp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEK------------MPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHh------------cccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHH
Confidence            345666677777666653  2222            45566677776666655 345666667777666666665543  


Q ss_pred             hhhCCCCccEEEccCCcc
Q 009079           86 AIGELHMLKSLDVSFNSI  103 (544)
Q Consensus        86 ~~~~~~~L~~L~l~~~~l  103 (544)
                      .+.++++|+.|.|..|..
T Consensus        83 YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HHhcCchhhhHhhccCCc
Confidence            456666666666665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00032  Score=61.70  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC--CCCc-CCCCccCCCCCcceEecCCcccCCCC-CCCCCCC
Q 009079          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN--PLRQ-VPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSL  474 (544)
Q Consensus       399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n--~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l  474 (544)
                      ......|+.+++.++.++.+..  |..+|+|+.|.++.|  ++.. +..- ...+|+|+++++++|++..+. ...+..+
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhh
Confidence            3445566666677666665433  577888999999988  4442 2222 344588888888888777532 3445666


Q ss_pred             ccCceEeecCCcccccC----ccccCCCCCCeeecCCCCCCCC
Q 009079          475 PHLQELYLRRMQLREAP----TDILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       475 ~~L~~L~ls~n~l~~i~----~~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      ++|..|++.+|..+.+-    ..|.-+++|+.|+-....=...
T Consensus       116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea  158 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEA  158 (260)
T ss_pred             cchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccc
Confidence            77888888888665432    1223377777776655544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=2.3e-05  Score=69.06  Aligned_cols=99  Identities=25%  Similarity=0.298  Sum_probs=78.6

Q ss_pred             CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc--cccCCCCCCe
Q 009079          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRI  502 (544)
Q Consensus       425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~--~~~~~~~L~~  502 (544)
                      .+.+.+.|+.=||.+.+|..  ...++.|+.|.|+=|+++.+.+  +..|++|++|+|..|.|.++.+  .+.++|+|+.
T Consensus        17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            35677888999999998854  6789999999999999988855  8899999999999999887643  3567999999


Q ss_pred             eecCCCCCC--CCC----cccccceeeeEec
Q 009079          503 LDLSQNSLQ--SIP----EVTYIFVMLQKKS  527 (544)
Q Consensus       503 L~l~~n~l~--~l~----~~l~~~~~L~~l~  527 (544)
                      |+|..|+=.  .-+    ..+..+|+|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998754  111    2256677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.71  E-value=0.00046  Score=70.52  Aligned_cols=230  Identities=21%  Similarity=0.190  Sum_probs=126.1

Q ss_pred             HHHhhhcceeEcCCC-cccccc-hHHhhcccccCCCCceeeecCccEEecccC-c-ccc----hhHhhcCCCCCCEEEcC
Q 009079            5 LKAARTSGSLNLSNR-SLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IEK----LKEDLRNLPLLTVLNVS   76 (544)
Q Consensus         5 ~~~~~~~~~l~ls~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-l~~----~~~~~~~~~~L~~L~l~   76 (544)
                      ......++.+.+.+. .+.+.. ..+..            .++.|+.|+++++ . ...    .......+++|++++++
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  251 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALAL------------KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS  251 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHh------------hCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence            344567777877765 344322 11111            2578999999873 1 111    22356677999999999


Q ss_pred             CCC-CCCc--chhhhCCCCccEEEccCCc-cc--cCCccccccCCccEEEcCCCCCc---cCCcccccCcCCCEEEcCCC
Q 009079           77 HNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN  147 (544)
Q Consensus        77 ~~~-~~~l--~~~~~~~~~L~~L~l~~~~-l~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~  147 (544)
                      .+. +++.  ......|++|++|.+.+|. ++  .+......++.|++|+++++...   .+.....++++++.+.+...
T Consensus       252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            987 6643  2223458999999988785 55  34444678899999999988653   12223445777776554433


Q ss_pred             ccccCCccccCCCCceEEEecCCcc---ccccchhhcCccccceEEcCCCcCCCCc--ccccCCCceeEEEccCCccccC
Q 009079          148 CITSLPEDLADCSKMSKLDVEGNKL---TVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSI  222 (544)
Q Consensus       148 ~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~l  222 (544)
                      ..         +..++.+.+.+...   ..........++.++.+.+..+......  ..+..++.|. ..+...     
T Consensus       332 ~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~-----  396 (482)
T KOG1947|consen  332 NG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR-----  396 (482)
T ss_pred             CC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH-----
Confidence            21         34444444443322   1233333566677777766666543221  3344555552 222110     


Q ss_pred             CcCCccCCCCCEEEccCCcCCcCc--hhhhC-CCCCCEEECCCCc
Q 009079          223 PSSISGCCSLAEFYMGNNALSALP--AELGK-LSKLGTLDLHSNQ  264 (544)
Q Consensus       223 ~~~~~~~~~L~~l~l~~~~~~~l~--~~l~~-~~~L~~L~l~~~~  264 (544)
                         ...+..++.+++..+......  ..... +.+++.+++.++.
T Consensus       397 ---~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  397 ---LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             ---hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence               111112666777666544221  11111 5566666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.0017  Score=57.34  Aligned_cols=103  Identities=23%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc--ccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCC
Q 009079          424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQ  499 (544)
Q Consensus       424 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~  499 (544)
                      -.+..|+.+.+.+..++++.  .+..+|+|++|.++.|  .+..-...-...+|+|+.|++++|+|+.+.  ..+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34466777777777777663  3677889999999998  444333333455699999999999887431  22455778


Q ss_pred             CCeeecCCCCCCCCC----cccccceeeeEecc
Q 009079          500 LRILDLSQNSLQSIP----EVTYIFVMLQKKSI  528 (544)
Q Consensus       500 L~~L~l~~n~l~~l~----~~l~~~~~L~~l~l  528 (544)
                      |..|++.+|+.+.+-    ..+..+++|+.+|-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            889999999887542    23566777777763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.77  E-value=0.0049  Score=32.00  Aligned_cols=17  Identities=29%  Similarity=0.360  Sum_probs=8.7

Q ss_pred             CceEeecCCcccccCcc
Q 009079          477 LQELYLRRMQLREAPTD  493 (544)
Q Consensus       477 L~~L~ls~n~l~~i~~~  493 (544)
                      |+.|++++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.74  E-value=0.00022  Score=61.26  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=45.7

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  124 (544)
                      +..+.||++.+++..+..-++.++.+..++++.+++..+|..+.....+..+++..|..++.|.+++..+++++++..++
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            33555666665555444455555555555655555555555555555555555555555555555555555555555555


Q ss_pred             C
Q 009079          125 Q  125 (544)
Q Consensus       125 ~  125 (544)
                      .
T Consensus       122 ~  122 (326)
T KOG0473|consen  122 E  122 (326)
T ss_pred             c
Confidence            4

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.59  E-value=0.0017  Score=66.39  Aligned_cols=130  Identities=24%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CCCccEEEcCCCC-CCC--CChhhhcCCCCcEEEccCC--CCCCC---CHHHHhCCCCCCEEECCCCC-CCcCCCCccC-
Q 009079          379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN--KIKDW---PDAILTSLSSLSCLKLDNNP-LRQVPSDGFK-  448 (544)
Q Consensus       379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~~--~l~~~---~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~-  448 (544)
                      ++.++.+.+.++. ++.  +......++.|++|+++++  .+...   .......+++|+.++++++. +++.....+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5778888888773 554  4455677888888888763  22221   12234556888888888887 6654433333 


Q ss_pred             CCCCcceEecCCcc-cCCCCCCCC-CCCccCceEeecCCc-cc--ccCccccCCCCCCeeecCCC
Q 009079          449 DIPMLQILDLSYNI-ASLPENPPF-SSLPHLQELYLRRMQ-LR--EAPTDILRLQQLRILDLSQN  508 (544)
Q Consensus       449 ~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ls~n~-l~--~i~~~~~~~~~L~~L~l~~n  508 (544)
                      .|++|+.|.+.++. +++.+...+ ..++.|++|++++|. ++  .+.....+++.|+.|.+.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            27788888877665 555554444 336778888888773 32  23333344666666555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.50  E-value=0.0046  Score=32.13  Aligned_cols=21  Identities=48%  Similarity=0.526  Sum_probs=17.1

Q ss_pred             CCCeeecCCCCCCCCCccccc
Q 009079          499 QLRILDLSQNSLQSIPEVTYI  519 (544)
Q Consensus       499 ~L~~L~l~~n~l~~l~~~l~~  519 (544)
                      +|+.||+++|+++.+|+.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            578999999999988876654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.47  E-value=0.0092  Score=28.65  Aligned_cols=15  Identities=27%  Similarity=0.313  Sum_probs=5.3

Q ss_pred             cCceEeecCCccccc
Q 009079          476 HLQELYLRRMQLREA  490 (544)
Q Consensus       476 ~L~~L~ls~n~l~~i  490 (544)
                      +|+.|+|++|.++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444433

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.35  E-value=9.7e-05  Score=73.40  Aligned_cols=176  Identities=27%  Similarity=0.268  Sum_probs=94.5

Q ss_pred             ceeeecCCCccC-----CCchhhccCCCccEEEcCCCCCCC-----CChhhhcC-CCCcEEEccCCCCCCC----CHHHH
Q 009079          359 SKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDW----PDAIL  423 (544)
Q Consensus       359 l~~l~l~~~~~~-----~i~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~~~l~~~----~~~~l  423 (544)
                      +..+.+.+|.+.     .+...+...+.|+.|++++|.+++     +...+... ..++.|++..|.++..    ..+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            444555555444     223334445666777777776664     22222222 4456666666666542    22334


Q ss_pred             hCCCCCCEEECCCCCCCc----CCCCccC----CCCCcceEecCCcccCCCCC----CCCCCCcc-CceEeecCCcccc-
Q 009079          424 TSLSSLSCLKLDNNPLRQ----VPSDGFK----DIPMLQILDLSYNIASLPEN----PPFSSLPH-LQELYLRRMQLRE-  489 (544)
Q Consensus       424 ~~~~~L~~L~l~~n~i~~----~~~~~l~----~~~~L~~L~l~~n~l~~~~~----~~~~~l~~-L~~L~ls~n~l~~-  489 (544)
                      .....++.++++.|.+..    ....++.    ...+++.|.+.+|.++....    ..++..+. +..|++..|.+.. 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            446666777776666532    1111122    24466677777665553221    22344444 5567777776552 


Q ss_pred             ----cCccccCC-CCCCeeecCCCCCC-----CCCcccccceeeeEeccCCcccc
Q 009079          490 ----APTDILRL-QQLRILDLSQNSLQ-----SIPEVTYIFVMLQKKSINTELVD  534 (544)
Q Consensus       490 ----i~~~~~~~-~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~l~l~~n~~~  534 (544)
                          +...+... +.++.++++.|+++     .+++.+..++.++++.++.|.+-
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                23333444 56677777777776     34556667777777777777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.32  E-value=0.01  Score=28.47  Aligned_cols=17  Identities=59%  Similarity=0.870  Sum_probs=10.6

Q ss_pred             CCCCeeecCCCCCCCCC
Q 009079          498 QQLRILDLSQNSLQSIP  514 (544)
Q Consensus       498 ~~L~~L~l~~n~l~~l~  514 (544)
                      ++|+.|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46888999999888765

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.02  E-value=0.00039  Score=69.17  Aligned_cols=179  Identities=25%  Similarity=0.275  Sum_probs=97.8

Q ss_pred             cceeEcCCCcccccchHHh-hcccccCCCCceeeecCccEEecccCcccc-----hhHhhcCC-CCCCEEEcCCCCCC--
Q 009079           11 SGSLNLSNRSLRDVPNEVY-KNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS--   81 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~L~l~~~~~~--   81 (544)
                      +..++|.++.+.+-+.... +.+..         .+.|..|+++++.+..     +-..+... ..++.|++..|.++  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t---------~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~  159 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKT---------LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE  159 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcc---------cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence            5566666666664333322 22222         4566777777776651     11223332 44566666666655  


Q ss_pred             ---CcchhhhCCCCccEEEccCCccc-----cCCcccc----ccCCccEEEcCCCCCccC-----CcccccCcC-CCEEE
Q 009079           82 ---ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKEL-----PSSLGRCLN-LSDFK  143 (544)
Q Consensus        82 ---~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~----~~~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~  143 (544)
                         .+.+.+.....++.++++.|.+.     .++..+.    ...++++|++..+.++..     ...+...+. ++.++
T Consensus       160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~  239 (478)
T KOG4308|consen  160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD  239 (478)
T ss_pred             chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence               23345555667777777776553     1222233    355677777777766511     112333444 55566


Q ss_pred             cCCCcccc-----CCccccCC-CCceEEEecCCcccccc----chhhcCccccceEEcCCCcCCC
Q 009079          144 ASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG  198 (544)
Q Consensus       144 l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  198 (544)
                      +..|.+..     +.+.+... ..++.+++..|.++...    ...+..++.++++.+..|.+..
T Consensus       240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            66666552     22334444 56778888877776322    2234555677888888777653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.80  E-value=0.0017  Score=54.95  Aligned_cols=82  Identities=23%  Similarity=0.089  Sum_probs=46.6

Q ss_pred             CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC-cCCCCccC-CCCCcceEecCCc-ccCCCCCCCCCCCccCce
Q 009079          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFK-DIPMLQILDLSYN-IASLPENPPFSSLPHLQE  479 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~-~~~~~~l~-~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~  479 (544)
                      ..++.+|-+++.|......-+..++.++.|.+.+|+-. +...+-+. ..++|+.|++++| +|++-+...+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34677888888877777777777888888888777632 21111111 2345555555544 444444444444455555


Q ss_pred             EeecC
Q 009079          480 LYLRR  484 (544)
Q Consensus       480 L~ls~  484 (544)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            55444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.36  E-value=0.0012  Score=56.87  Aligned_cols=93  Identities=20%  Similarity=0.264  Sum_probs=60.2

Q ss_pred             ccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCccccc
Q 009079           57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGR  135 (544)
Q Consensus        57 l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  135 (544)
                      ++++| ..+..+...+.||++.+.+..+...|+.+..|..|+++.+++..+|.+++....+..++...|..+..|.+++.
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            33444 34566667777777777666665566666667777777777666676666666666666666666666666666


Q ss_pred             CcCCCEEEcCCCcc
Q 009079          136 CLNLSDFKASNNCI  149 (544)
Q Consensus       136 ~~~L~~L~l~~~~~  149 (544)
                      .+++++++..++.+
T Consensus       110 ~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEF  123 (326)
T ss_pred             cCCcchhhhccCcc
Confidence            66666666655543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.79  E-value=0.0053  Score=52.03  Aligned_cols=81  Identities=26%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             CCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCC-CCCCCHHHHh-CCCCCCEEECCCCC-CCcCCCCccCCCCCcce
Q 009079          380 GEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK-IKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI  455 (544)
Q Consensus       380 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~-~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~  455 (544)
                      ..++.++-+++.|... -.-+..++.++.|.+.+|. +.+.-...++ -.++|+.|++++|+ |++-....+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3567777777766542 2235667777777777773 4432222222 24788888888776 77666566777778887


Q ss_pred             EecCC
Q 009079          456 LDLSY  460 (544)
Q Consensus       456 L~l~~  460 (544)
                      |.|.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            77765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.46  E-value=0.091  Score=28.48  Aligned_cols=17  Identities=41%  Similarity=0.522  Sum_probs=7.6

Q ss_pred             cCceEeecCCcccccCc
Q 009079          476 HLQELYLRRMQLREAPT  492 (544)
Q Consensus       476 ~L~~L~ls~n~l~~i~~  492 (544)
                      +|+.|+|++|.|+.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.46  E-value=0.091  Score=28.48  Aligned_cols=17  Identities=41%  Similarity=0.522  Sum_probs=7.6

Q ss_pred             cCceEeecCCcccccCc
Q 009079          476 HLQELYLRRMQLREAPT  492 (544)
Q Consensus       476 ~L~~L~ls~n~l~~i~~  492 (544)
                      +|+.|+|++|.|+.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            34444444444444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.31  E-value=0.33  Score=26.21  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=7.8

Q ss_pred             CCcEEEccCCCCCCCCHH
Q 009079          404 SLQTLILSRNKIKDWPDA  421 (544)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~  421 (544)
                      +|+.|++++|.++.++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.31  E-value=0.33  Score=26.21  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=7.8

Q ss_pred             CCcEEEccCCCCCCCCHH
Q 009079          404 SLQTLILSRNKIKDWPDA  421 (544)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~  421 (544)
                      +|+.|++++|.++.++..
T Consensus         3 ~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        3 NLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCEEECCCCcCCcCCHH
Confidence            344444444444444433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.91  E-value=0.44  Score=25.64  Aligned_cols=19  Identities=42%  Similarity=0.718  Sum_probs=14.7

Q ss_pred             CCCCeeecCCCCCCCCCcc
Q 009079          498 QQLRILDLSQNSLQSIPEV  516 (544)
Q Consensus       498 ~~L~~L~l~~n~l~~l~~~  516 (544)
                      ++|+.|++++|+++++|+.
T Consensus         2 ~~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        2 PSLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             cccceeecCCCccccCccc
Confidence            4678888888888888864

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.08  E-value=0.24  Score=26.19  Aligned_cols=14  Identities=50%  Similarity=0.608  Sum_probs=5.3

Q ss_pred             CCCcEEEccCCCCC
Q 009079          403 ASLQTLILSRNKIK  416 (544)
Q Consensus       403 ~~L~~L~l~~~~l~  416 (544)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.09  E-value=1.1  Score=24.27  Aligned_cols=17  Identities=47%  Similarity=0.624  Sum_probs=9.9

Q ss_pred             CCCCeeecCCCCCCCCC
Q 009079          498 QQLRILDLSQNSLQSIP  514 (544)
Q Consensus       498 ~~L~~L~l~~n~l~~l~  514 (544)
                      ++|+.|++++|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            45666666666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	544
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		1e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		4e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		5e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		7e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		8e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		8e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		9e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		6e-04
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		7e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I   S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 9/189 (4%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
           N  +    + + L  + + +   +K+L L+   LS++PS+ +    +TKL L   + N +
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           Q LP  +     +L+TL ++ NK++  P  +            D N L+ +P   F  + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNS 509
            L  L L YN + SLP+   F  L  L+EL L   QL+  P                 N 
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 510 LQSIPEVTY 518
           L+ +PE  +
Sbjct: 193 LKRVPEGAF 201

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDLSYN + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRRMQLREAP 491
           ++L L + QL+  P
Sbjct: 184 KDLRLYQNQLKSVP 197

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 294 TGLDLSGNHFYGAVPPFFG 312

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDL  N + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRRMQLREAP 491
           ++L L   QL+  P
Sbjct: 184 KQLSLNDNQLKSVP 197

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
            + LH+N     C
Sbjct: 128 KIWLHTNPWDCSC 140

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
           +E     + L ++ T +  ++  L LE   L ++P  +++   ++TKL LS+N IQ LP 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
                   L  L L  NK++  P+ +            D N L+ VP   F  +  LQ +
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
            L  N
Sbjct: 130 WLHTN 134

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
           EA  +   DLS++ I  L     S    L+ L L++N+I    D                
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           N L  + S  F+++  L++LDLSYN      +  F  LP+L+EL L   QL+  P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 181
           NQ+ +L P      +NL +    +N + +LP  + D  ++++ LD+  N+LTVL + +  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN 240
               L EL    N L  +P  I  L+ L  L L QN++ SIP  +     SL   Y+  N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 144/331 (43%), Gaps = 55/331 (16%)
Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
           L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     NN I
Sbjct: 66  LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQI 123
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
           T + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +L+ L
Sbjct: 124 TDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LANLTTL 178
Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQLK+  
Sbjct: 179 ERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIG 236
Query: 270 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
             A                        +T L  L L  N +  L       P   L K  
Sbjct: 237 TLAS-----------------------LTNLTDLDLANNQISNL------APLSGLTKLT 267
Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEITKLD 386
             +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +T L 
Sbjct: 268 ELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLTYLT 314
Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           L  N+I ++ P +SS   LQ L  + NK+ D
Sbjct: 315 LYFNNISDISP-VSSLTKLQRLFFANNKVSD 344

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 385 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 443
           L LSRN I+ +     +  A+L TL L  N++   P+               NNP+  +P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 444 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           S  F  IP L+ LDL     ++ + E   F  L +L+ L L    LRE P
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIP 201

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
           D+ +    LQ   +    + +L +  +    L  L ++ N L  LPA+I  L+ L+ L +
Sbjct: 98  DQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 99  -SFNSIMKIPDEIGSATA---------LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +   + ++P+ + S  A         L         ++ LP+S+    NL   K  N+ 
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNN--LIASWTMLTELIAS--KNLLNGMPETIG 204
           +++L   +    K+ +LD+ G   T L N   +      L  LI     NLL  +P  I 
Sbjct: 218 LSALGPAIHHLPKLEELDLRG--CTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIH 274
Query: 205 SLSRLIRLDL 214
            L++L +LDL
Sbjct: 275 RLTQLEKLDL 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	544
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-53
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-56
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-50
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-49
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-37
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-18
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (517), Expect = 4e-58
 Identities = 96/531 (18%), Positives = 179/531 (33%), Gaps = 49/531 (9%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC--SLAEFYMG 238
              T   L  + N + G+       +    L+    + L  I   +      SL      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 239 NNALSALPAEL---GKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPE 293
           +     +   +        + +++L  +           C   L  LDL+   LS LP  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++TL+KL+L+ N    L     +      L +L  +         +   E+L  +  
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL-- 352

Query: 354 RLSVTSKELSLEGMNLSAIPS---EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLI 409
                 +EL L   ++        ++     +  L+LS N    L  E    C  L+ L 
Sbjct: 353 ------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 410 LSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           L+  ++K     +   +L  L  L L ++ L       F  +P LQ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 468 NPP--FSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
                  +L  L+ L L    L          L+ +  +DLS N L S   
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (478), Expect = 1e-52
 Identities = 96/523 (18%), Positives = 175/523 (33%), Gaps = 47/523 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L+   +  +  + +++               L  L+L  N +  + E  L     L 
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQ------------HRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL 129
            L      +S +    +     L+SL +  N I  I   +      L   D  +N +  L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 130 PSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWT 184
                   +         + N I  +     D +    L+  G +    +      ++  
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 185 MLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNN 240
            L            +   +        +  ++L ++   +I S+   C   L E  +   
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE--IGK 296
            LS LP+ L  LS L  L L +N+ +  C  +      L+ L +  N+         +  
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356
           +  LR+L L+ + + T     +     + L+ L   L  NE     + K +      +L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN--LSYNEPL---SLKTEAFKECPQL- 402

Query: 357 VTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 413
              + L L    L    ++        +  L+LS + +     +      +LQ L L  N
Sbjct: 403 ---ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 414 KIKDW---PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
                       L +L  L  L L    L  +    F  + M+  +DLS+N + S     
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQ 511
             S L  +  L L    +      +L  L Q R ++L QN L 
Sbjct: 520 -LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  162 bits (413), Expect = 1e-43
 Identities = 91/496 (18%), Positives = 181/496 (36%), Gaps = 46/496 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           SL L +  +  +                      L+ L   +N I  L KED+ +L   T
Sbjct: 133 SLYLGSNHISSIKLPKGFPT------------EKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 72  V--LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA---TALVKFDCSSNQL 126
              LN++ N ++ +     +  + +SL+      + +  +        +L          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 127 KELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +++  ++      +++       +   ++  +     S + +LD+    L+ L + L   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VG 299

Query: 183 WTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGN 239
            + L +L+ S N    + + +  +   L  L +  N          +    +L E  + +
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 240 NALSALPA---ELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE- 293
           + +        +L  LS L +L+L  N+      EA +   +L +LDL+   L     + 
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
               +  L+ L L+ + L      L +G     L++L   L  N   + +  K + +   
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQHLN--LQGNHFPKGNIQKTNSLQTL 475

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
            RL    + L L   +LS+I    +     +  +DLS N +     E  S      L L+
Sbjct: 476 GRL----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N I     ++L  LS    + L  NPL    S    +I  L+    +       E+   
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS----NIYFLEWYKENMQKLEDTEDTLC 587

Query: 472 SSLPHLQELYLRRMQL 487
            + P L+ + L  + L
Sbjct: 588 ENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (310), Expect = 6e-30
 Identities = 60/319 (18%), Positives = 112/319 (35%), Gaps = 28/319 (8%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
            +     +  IP ++    S        N L  +      +L  L  LDL   Q+     
Sbjct: 17  YNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
           +  Q   RL  L L+ N L  +          L+ L      + ++    ++       K
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-----QK 129

Query: 328 YLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA---GEIT 383
            L S  L  N     S+ K        +L    K L  +   +  +  E   +       
Sbjct: 130 TLESLYLGSNH---ISSIKLPKGFPTEKL----KVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL--TSLSSLSCLKLDNNPLRQ 441
            L+L+ N I  + P     A  Q+L     +        L  +++ SL     ++     
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 442 VPSDGFKDIPM--LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ 498
           +    F+ +    ++ ++L  +   ++  N  F     LQEL L    L E P+ ++ L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTATHLSELPSGLVGLS 301

Query: 499 QLRILDLSQNSLQSIPEVT 517
            L+ L LS N  +++ +++
Sbjct: 302 TLKKLVLSANKFENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 5/175 (2%)

Query: 360 KELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD 417
           + L      L  I +        +T LDL+R  I  +  +   S   L TL+L+ N +  
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
             +  L+   +L  L      +  +      +   L+ L L  N  S  + P       L
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 478 QELYLRRMQLREAPTDILR-LQQLRI--LDLSQNSLQSIPEVTYIFVMLQKKSIN 529
           + L  +   +     + +  LQQ     L+L+ N +  I    +   + Q  +  
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 43/247 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
            +      +  N  L+ +P  +    +   L  + N L T++++  +      L  L   
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSR-----LINLT-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L L    +  I  + +++   +  L L+ N 
Sbjct: 61  ----------------------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           +  +    LS   +L+ L   +  I       L +  +L  L L +N +  +        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 451 PMLQILDLSYN-IASLPENPPFSSLPHLQELYLR--RMQLREAPTDILRLQQLRILDLSQ 507
             L++LD   N I  L +    SSL     L L      +             + L+   
Sbjct: 153 EKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 508 NSLQSIP 514
                + 
Sbjct: 212 TQNLLVI 218

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  202 bits (517), Expect = 1e-57
 Identities = 109/506 (21%), Positives = 196/506 (38%), Gaps = 53/506 (10%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           V  +    +H  + ++ +DL     +TVLN++HN+L  L  A       L SLDV FN+I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 104 MKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCS 160
            K+ P+       L   +   N+L +L   +   C NL++    +N I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE---TIGSLSRLIRLDLHQN 217
            +  LD+  N L+            L EL+ S N +  +      I + S L +L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 218 RILSI-PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCVEA 272
           +I    P        L   ++ N  L     E        + +  L L ++QL       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 273 ----CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                   L++LDLS N+L+ +  +    +  L    L  N ++ L S  ++G     ++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVR 299

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLD 386
           YL                         L  +  + S+   +L  I          +  L+
Sbjct: 300 YLN------------------------LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRN--KIKDWPDAILTSL--SSLSCLKLDNNPLRQ 441
           +  N I  +     +   +L+ L LS +   ++   +    SL  S L  L L  N + +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
           + SD F  +  L++LDL  N I        +  L ++ E+YL   +  +   +    +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 500 LRILDLSQNSLQSIPEVTYIFVMLQK 525
           L+ L L + +L+++      F  L+ 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (487), Expect = 2e-53
 Identities = 114/544 (20%), Positives = 204/544 (37%), Gaps = 88/544 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  LR +P   +  +              L  L +  N I KL+ +  + LP+L 
Sbjct: 29  VLNLTHNQLRRLPAANFTRY------------SQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL 129
           VLN+ HN+LS+L          L  L +  NSI KI  +       L+  D S N L   
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 130 -PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL---DVEGNKLTVLSNNLIASWTM 185
              +  +  NL +   SNN I +L  +  D    S L   ++  N++   S     +   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 186 LTELIASKNLLNG-MPETIG---SLSRLIRLDLHQNRILSIPSSISGCC---SLAEFYMG 238
           L  L  +   L   + E +    + + +  L L  +++ +  ++        +L    + 
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 239 NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN-------- 285
            N L+ +       L +L    L  N ++   + +  L     +  L+L  +        
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 286 -SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
            SL  +       +  L  L +  N +  ++S++  G     L  L+             
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----LINLK------------- 356

Query: 344 TKEDLITMATRLSVTSKELSLEG--MNLSAIPSEIWE---AGEITKLDLSRNSIQELPPE 398
                             LSL     +L  + +E +       +  L+L++N I ++  +
Sbjct: 357 -----------------YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 399 -LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             S    L+ L L  N+I           L ++  + L  N   Q+  + F  +P LQ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 457 DLSYN-IASLPENP-PFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSI 513
            L    + ++  +P PF  L +L  L L    +     D+L  L++L ILDL  N+L  +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 514 PEVT 517
            +  
Sbjct: 520 WKHA 523

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  170 bits (434), Expect = 3e-46
 Identities = 95/512 (18%), Positives = 182/512 (35%), Gaps = 54/512 (10%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPL--LTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS 102
           LQ+L+L++N I+ L  E+L       L  L +S N++ E  P     +  L  L ++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 103 IMK-IPDEIGSA---TALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPED 155
           +   + +++      T++     S++QL    ++    L   NL+    S N +  +  D
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 156 -LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM----------PETIG 204
             A   ++    +E N +  L ++ +     +  L   ++                 +  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 205 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLG-----TL 258
            L  L  L++  N I  I  +  +G  +L    + N+  S           L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314
           +L  N++ +   +A      L VLDL  N +       E   +  + ++ L+ N    L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +         L+ L   L          +          L      L L   N++ I  
Sbjct: 447 RNSFALVP--SLQRLM--LRRVALKN-VDSSPSPFQPLRNL----TILDLSNNNIANIND 497

Query: 375 EIWEA-GEITKLDLSRNSIQELPPE---------LSSCASLQTLILSRNKIKDWPDAILT 424
           ++ E   ++  LDL  N++  L            L   + L  L L  N   + P  +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  L  + L  N L  +P+  F +   L+ L+L  N I S+ +     +  +L EL +R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
                     I     +  ++ +  ++  +  
Sbjct: 618 FNPFDCTCESIAWF--VNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (417), Expect = 9e-44
 Identities = 81/425 (19%), Positives = 143/425 (33%), Gaps = 63/425 (14%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNN 178
           DCS  +L ++P  L    N++    ++N +  L   +    S+++ LDV  N ++ L   
Sbjct: 10  DCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 179 LIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFY 236
           L     ML  L    N L+ + + T    + L  L L  N I  I  +      +L    
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127

Query: 237 MGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLP 291
           + +N LS+       +L  L  L L +N+++    E         L  L+LS+N +    
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187

Query: 292 PE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350
           P     +  L  L L    L               L+   + +                 
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSL------TEKLCLELANTSI----------------- 224

Query: 351 MATRLSVTSKELSLEGMNLSAIPSEI---WEAGEITKLDLSRNSIQELPPE-LSSCASLQ 406
                    + LSL    LS   +      +   +T LDLS N++  +  +  +    L+
Sbjct: 225 ---------RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
              L  N I+      L  L ++  L L  +                    +S       
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------FTKQSISLASLPKI 320

Query: 467 ENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEVTYIFVMLQK 525
           ++  F  L  L+ L +    +    +++   L  L+ L LS +           FV L  
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 526 KSINT 530
             ++ 
Sbjct: 381 SPLHI 385

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (269), Expect = 1e-24
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 25/255 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS- 331
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L S 
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLTSL 54

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRN 390
            +  N     S  + +L      L    K L+L+   LS +  +       +T+L L  N
Sbjct: 55  DVGFNTI---SKLEPELCQKLPML----KVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 391 SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
           SIQ++         +L TL LS N +          L +L  L L NN ++ + S+    
Sbjct: 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167

Query: 450 I--PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRI 502
                L+ L+LS N I        F ++  L  L+L  +QL  + T+     L    +R 
Sbjct: 168 FANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 503 LDLSQNSLQSIPEVT 517
           L LS + L +    T
Sbjct: 227 LSLSNSQLSTTSNTT 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (510), Expect = 3e-57
 Identities = 90/536 (16%), Positives = 178/536 (33%), Gaps = 63/536 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S  LP   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             LQ L    + +K     +   SL  L  L +     +      F  +  L  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
                  +  F++  +L  L L + QL +    +   L +L++L++S N+L  +  
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (476), Expect = 3e-52
 Identities = 100/498 (20%), Positives = 168/498 (33%), Gaps = 66/498 (13%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+         L  L  L     KL+ L +  IG+L  LK L+V+ N I 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-----NLSDFKASNNCITSLPEDLA 157
             K+P    + T LV  D S N ++ +  +  + L            S N I  + +   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 158 DCSKMSKLDVEGNKL-TVLSNNLIASWTMLTELIASKNLLNGM-------PETIGSLSRL 209
              K+ +L + GN   + +    + +   L                    P  +  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 210 --IRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
                 L      S          +++   +   ++  L  ++ K  K  +L +   QLK
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK 320

Query: 267 EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPA 324
           +       L  L  L L+ N  S    ++  + +L  L L+ N L      S  +  T +
Sbjct: 321 Q--FPTLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                  + L L       + +      E+  
Sbjct: 378 L----------------------------------RHLDLSFNGAIIMSANFMGLEELQH 403

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           LD   ++++ +       S   L  L +S    K   D I   L+SL+ LK+  N  +  
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 443 -PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
             S+ F +   L  LDLS   +  +     F +L  LQ L +    L    +     L  
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 500 LRILDLSQNSLQSIPEVT 517
           L  LD S N +++   + 
Sbjct: 523 LSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (252), Expect = 1e-22
 Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
            V +         LS +P +I        +DLS N ++ L     S+ + LQ L LSR +
Sbjct: 10  VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           I+   D     L  LS L L  NP++      F  +  L+ L      +ASL    P   
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF-PIGQ 126

Query: 474 LPHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPE 515
           L  L++L +    +     P     L  L  +DLS N +Q+I  
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.8 bits (231), Expect = 5e-20
 Identities = 42/221 (19%), Positives = 73/221 (33%), Gaps = 17/221 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L+LS  +L       Y +               L+ L L+ N    +  +   L  L  
Sbjct: 354 YLDLSRNALSFSGCCSYSDL----------GTNSLRHLDLSFNGAIIMSANFMGLEELQH 403

Query: 73  LNVSHNKLSELPA--AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKE- 128
           L+  H+ L  +    A   L  L  LD+S+ +     D I    T+L     + N  K+ 
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 129 -LPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            L +      NL+    S   +  +         ++  L++  N L  L ++       L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523

Query: 187 TELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSSI 226
           + L  S N +      +      L   +L  N +  I    
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 44/247 (17%), Positives = 80/247 (32%), Gaps = 44/247 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +        +  LS +P +I   ++ + + L+ NPL+ L+S   +         L+  
Sbjct: 9   EVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSN-----FSELQ-- 59

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNS 391
                                        L L    +  I  +       ++ L L+ N 
Sbjct: 60  ----------------------------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKD 449
           IQ   P   S   SL+ L+    K+       +  L +L  L + +N +        F +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 450 IPMLQILDLSYN-IASLPEN---PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505
           +  L  +DLSYN I ++  N       +      L +    +        +  +L  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 506 SQNSLQS 512
             N   S
Sbjct: 212 RGNFNSS 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (509), Expect = 9e-57
 Identities = 85/516 (16%), Positives = 177/516 (34%), Gaps = 62/516 (12%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIG--SATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D       + L+K   +S+   K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTS-------LSS 428
           ++   ++ ++LS N I + P E  S+ + L ++ L  N + + P   L            
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 429 LSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
           L+ + L  N L ++  D     +P L  +DLSYN  +  P      +   L+   +R  +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQR 547

Query: 487 -------LREAPTDILRLQQLRILDLSQNSLQSIPE 515
                  LRE P  I     L  L +  N ++ + E
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (483), Expect = 4e-53
 Identities = 80/496 (16%), Positives = 163/496 (32%), Gaps = 79/496 (15%)

Query: 46  DLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM 104
           DL K  +  +  +K +K+  R     T +    N ++ +  A+  L  L+   +  +  +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 105 -KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKM 162
            +   E             + Q K          +L+D +  +   +T LP  L    +M
Sbjct: 220 AENICEAWENENSE----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI--L 220
             ++V  N+       L   W  L +                   ++  + +  N +   
Sbjct: 276 QLINVACNRGISGEQ-LKDDWQALADA--------------PVGEKIQIIYIGYNNLKTF 320

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLS 278
            + +S+     L       N L       G   KL +L+L  NQ+ E     C    ++ 
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380

Query: 279 VLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L  ++N L  +P   +   ++ +  +  + N + ++     +   P   K         
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK--------- 431

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE-ITKLDLSRNSIQEL 395
                             +      ++L    +S  P E++  G  ++ ++L  N + E+
Sbjct: 432 ---------------GINV----SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 396 PP--------ELSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDG 446
           P            +   L ++ L  NK+    D    T+L  L  + L  N   + P+  
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-Q 531

Query: 447 FKDIPMLQILDLSYNIA--------SLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ 498
             +   L+   +               PE    +  P L +L +    +R+    I    
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEG--ITLCPSLTQLQIGSNDIRKVNEKIT--P 587

Query: 499 QLRILDLSQNSLQSIP 514
            + +LD+  N   SI 
Sbjct: 588 NISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  181 bits (461), Expect = 4e-50
 Identities = 70/437 (16%), Positives = 131/437 (29%), Gaps = 81/437 (18%)

Query: 55  NNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPD----- 108
              +       NL  LT + V +     +LP  +  L  ++ ++V+ N  +         
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 109 ----EIGSATALVKFDCSSNQLKEL--PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
               +      +       N LK     +SL +   L   +   N +           K+
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRI- 219
           + L++  N++T +  N       +  L  + N L  +P      S+S +  +D   N I 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 220 -------LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
                    +  +     +++   + NN +S  P E     S L +++L  N L E    
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---- 471

Query: 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
                     +  NSL            L  + L  N L  L         P L      
Sbjct: 472 ----------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL------ 515

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                         + L   + S  P++   +  +    +    
Sbjct: 516 ----------------------------VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

Query: 392 IQ-------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
                    E P  ++ C SL  L +  N I+   + I  ++S L    + +NP   +  
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD---IKDNPNISIDL 604

Query: 445 DGFKDIPMLQILDLSYN 461
                     +  L Y+
Sbjct: 605 SYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (424), Expect = 5e-45
 Identities = 62/467 (13%), Positives = 146/467 (31%), Gaps = 84/467 (17%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED---LADCSKMSKLDVEGNKLTVLSNNL 179
            N+    P  +   ++    +           D     D S + K  +  +         
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                  T++    N +  + + +  L++L +  +  +  ++     +     +E+    
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY---A 235

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                   +   L  L  +++                      +  +L+ LP  +  +  
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEV---------------------YNCPNLTKLPTFLKALPE 274

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           ++ + +  N   +      +    A                                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK---------------------------I 307

Query: 360 KELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           + + +   NL    + + + +  ++  L+   N ++   P   S   L +L L+ N+I +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPEN------P 469
            P         +  L   +N L+ +P+    K + ++  +D SYN I S+         P
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
                 ++  + L   Q+ + P ++      L  ++L  N L  IP+
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (298), Expect = 2e-28
 Identities = 54/357 (15%), Positives = 115/357 (32%), Gaps = 64/357 (17%)

Query: 186 LTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGN 239
           +T L       +G +P+ IG L+ L  L L  +       L  P  IS   S  +     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 240 NALS-ALPAELGKL--SKLGTLDLHSNQLKEYC--VEACQLRLSVLDLSNNSLSGLPPEI 294
                       +   S L    ++S+  ++         L+ + +   +N+++ +   +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354
            ++T LR+  +  +P      ++         +Y +                        
Sbjct: 203 MRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQ------------------------ 236

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN 413
                               +     ++T +++     + +LP  L +   +Q + ++ N
Sbjct: 237 -------------QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 414 KIKDWPD-----AILTSLSSLSCLK---LDNNPLRQVP-SDGFKDIPMLQILDLSYN-IA 463
           +             L        ++   +  N L+  P     + +  L +L+  YN + 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEVTYI 519
                P F S   L  L L   Q+ E P +     +Q+  L  + N L+ IP +   
Sbjct: 344 GKL--PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 32/259 (12%), Positives = 77/259 (29%), Gaps = 35/259 (13%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L     SG +P  IG++T L  L L  +  +           P  +    S   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG----PKGISANMSDEQ 137

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
           + +                  S   K+         +I        + T++    N+I  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           +   +     L+   +  +              +    +                    +
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ------------------YK 239

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTDILRLQQLRILDLSQNSLQSI 513
             DL            + +L  L ++ +     L + PT +  L ++++++++ N   S 
Sbjct: 240 TEDLK-----------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

Query: 514 PEVTYIFVMLQKKSINTEL 532
            ++   +  L    +  ++
Sbjct: 289 EQLKDDWQALADAPVGEKI 307

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (512), Expect = 4e-56
 Identities = 89/539 (16%), Positives = 175/539 (32%), Gaps = 110/539 (20%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIG----------------- 88
           +  L LA    +    + +  L  L VL+   +  +      G                 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 89  ---------------ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
                             +L+        +  I  +   +    +    +N++  +  ++
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL-IAS 192
            R   L     +N+  T               + +  K         ++   LT++ + +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNI----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILS----------IPSSISGCCSLAEFYMGNNAL 242
              +  +P+ +  L  L  L++  NR +S          +         +  FYMG N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 243 SALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT- 299
              PA   L K+ KLG LD   N+++        ++L+ L L  N +  +P +    T  
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           +  L  + N L+ + +         +                                  
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVM---------------------------------- 646

Query: 360 KELSLEGMNLSAIPSEIWEAGEI------TKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
             +      + +    I  + +       + + LS N IQ+ P E  ++ + + T+ILS 
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 413 NKIKDWPDAILT-------SLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IA 463
           N +   P+  L        +   L+ + L  N L  +  D     +P L  +D+SYN  +
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 464 SLPENPPFSSLPHLQELYLRRMQ-------LREAPTDILRLQQLRILDLSQNSLQSIPE 515
           S P      +   L+   +R  +       LR+ PT I     L  L +  N ++ + E
Sbjct: 767 SFPTQ--PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (492), Expect = 2e-53
 Identities = 78/505 (15%), Positives = 150/505 (29%), Gaps = 106/505 (20%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L N   +T L+++       +P AIG+L  LK L    +S        G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 123 S--------------------------------NQLKELPSSLGRCLNLSDFKASNNCIT 150
                                             ++K +       L  +      N IT
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLI 210
            + + +   +K+  +    +  T  +  +                      +  +L  L 
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----KQYENEELSWSNLKDLT 494

Query: 211 RLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            ++L+    +  +P  +     L    +  N   +        ++L   +    +++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI-- 552

Query: 270 VEACQLRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                       +  N+L   P    + KM  L  L    N +R L +            
Sbjct: 553 ----------FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA------------ 590

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLD 386
                                     +L     +L L+   +  IP +      ++  L 
Sbjct: 591 ---------------------FGTNVKL----TDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 387 LSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLS-----SLSCLKLDNNPL 439
            S N ++ +P      S   + ++  S NKI      I  S+      + S + L  N +
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 440 RQVPSDGFKDIPMLQILDLSYN-IASLPEN------PPFSSLPHLQELYLRRMQLREAPT 492
           ++ P++ F     +  + LS N + S+PEN        + +   L  + LR  +L     
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745

Query: 493 DIL--RLQQLRILDLSQNSLQSIPE 515
           D     L  L  +D+S N   S P 
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPT 770

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  186 bits (474), Expect = 7e-51
 Identities = 71/458 (15%), Positives = 145/458 (31%), Gaps = 81/458 (17%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSH-NKLSELPAAIGELHMLKSLDVSFNSI-- 103
                      E  +    NL  LT + + +   +++LP  + +L  L+SL+++ N    
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 104 --------MKIPDEIGSATALVKFDCSSNQLKELPSS--LGRCLNLSDFKASNNCITSLP 153
                    ++ D+  +   +  F    N L+E P+S  L + + L      +N +  L 
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIR 211
                  K++ L ++ N++  +  +  A    +  L  S N L  +P      S+  +  
Sbjct: 590 A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 212 LDLHQNRILSIPSSISG------CCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
           +D   N+I S   +IS         + +   +  N +   P E     S + T+ L +N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           +                +  NSL            L  + L  N L +L         P 
Sbjct: 709 MTS--------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                    + +     S+ P++   + ++  
Sbjct: 755 L----------------------------------SNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 385 LDLSRNSI-------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
             +            ++ P  +++C SL  L +  N I+   + +   L  L    + +N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADN 837

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           P   +            +  L Y+            + 
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 7/147 (4%)

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            IWEA     LD             +  +         +   D P   L +   ++ L L
Sbjct: 276 AIWEA-----LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSL 330

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR--RMQLREAPT 492
                +    D    +  L++L    +  ++                 R  R+++     
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 493 DILRLQQLRILDLSQNSLQSIPEVTYI 519
            +   Q+L + DL Q+++   PE+  I
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPI 417

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  187 bits (476), Expect = 3e-52
 Identities = 91/533 (17%), Positives = 177/533 (33%), Gaps = 56/533 (10%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
                  F+ L +L  L L + QL +        L  L++L++S N+  S+  
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (459), Expect = 6e-50
 Identities = 110/531 (20%), Positives = 192/531 (36%), Gaps = 55/531 (10%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L+LS   LR + +  + +F             +LQ L L+   I+ +++   ++L  L+
Sbjct: 32  NLDLSFNPLRHLGSYSFFSF------------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCSSNQLK-- 127
            L ++ N +  L   A   L  L+ L     ++       IG    L + + + N ++  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 128 ELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMS----KLDVEGNKLTVLSNNLIAS 182
           +LP       NL     S+N I S+   DL    +M      LD+  N +  +       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 183 WTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY 236
              L +L    N  +   M   I  L+ L    L      +  +      S    L    
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 237 MGNNALSAL-------PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
           +    L+ L             L+ + +  L S  ++     +       L+L N     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
            P     + +L++L  T N       S V+ P+   L++L   L  N  S      +   
Sbjct: 319 FPTLK--LKSLKRLTFTSNKGGNA-FSEVDLPS---LEFL--DLSRNGLSFKGCCSQSDF 370

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQT 407
              T L    K L L    +  + S      ++  LD   ++++++       S  +L  
Sbjct: 371 GT-TSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGFKDIPMLQILDLSYN-IASL 465
           L +S    +   + I   LSSL  LK+  N        D F ++  L  LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
                F+SL  LQ L +         T   + L  L++LD S N + +  +
Sbjct: 486 SPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (434), Expect = 2e-46
 Identities = 100/493 (20%), Positives = 175/493 (35%), Gaps = 42/493 (8%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+ L       L  L  L      L+ L    IG L  LK L+V+ N I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKA----SNNCITSLPEDLA 157
             K+P+   + T L   D SSN+++ +  + L     +         S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 158 DCSKMSKLDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRL 212
              ++ KL +  N  ++ +    I     L                      +L  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 213 DLHQNRI-------LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
            + + R+         I    +   +++ F + +  +  +  +         L+L + + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKF 316

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
            ++        L  L  ++N       E+  + +L  L L+ N L        +      
Sbjct: 317 GQFP-TLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSEIWEAGEIT 383
           LKYL   L  N       T         +L    + L  +  NL  +   S       + 
Sbjct: 375 LKYLD--LSFNG----VITMSSNFLGLEQL----EHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 384 KLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
            LD+S    +       +  +SL+ L ++ N  ++ +   I T L +L+ L L    L Q
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR--LQ 498
           +    F  +  LQ+L++S+N   SL   P +  L  LQ L      +  +    L+    
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 499 QLRILDLSQNSLQ 511
            L  L+L+QN   
Sbjct: 544 SLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 8e-16
 Identities = 42/246 (17%), Positives = 72/246 (29%), Gaps = 44/246 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNS 391
                                        L L    +  I          ++ L L+ N 
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKD 449
           IQ L     S  +SLQ L+     +    +  +  L +L  L + +N ++     + F +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILDL 505
           +  L+ LDLS N            L  +      L L    +        +  +L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 506 SQNSLQ 511
             N   
Sbjct: 208 RNNFDS 213

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (479), Expect = 7e-52
 Identities = 115/450 (25%), Positives = 188/450 (41%), Gaps = 36/450 (8%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSI 103
           L  L L+ N+    +     +  LL  L +S N  S ELP   + ++  LK LD+SFN  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 104 M-KIPDEIGSATA-LVKFDCSSNQLK-ELPSSLGRCL--NLSDFKASNNCIT-SLPEDLA 157
             ++P+ + + +A L+  D SSN     +  +L +     L +    NN  T  +P  L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLH 215
           +CS++  L +  N L+  + ++L  S + L +L    N+L G +P+ +  +  L  L L 
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272
            N +   IPS +S C +L    + NN L+  +P  +G+L  L  L L +N        E 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 273 CQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
              R L  LDL+ N  +G +P  + K +              + ++ + G     +K   
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK------------IAANFIAGKRYVYIKNDG 582

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
            +   +        +        RLS T    ++                G +  LD+S 
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
           N +   +P E+ S   L  L L  N I    PD +   L  L+ L L +N L        
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAM 700

Query: 448 KDIPMLQILDLSYNIAS--LPENPPFSSLP 475
             + ML  +DLS N  S  +PE   F + P
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 9e-50
 Identities = 119/512 (23%), Positives = 186/512 (36%), Gaps = 82/512 (16%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM- 104
           L+ L ++ NN       L +   L  L++S NKLS +   AI     LK L++S N  + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 105 KIPDEIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCIT-SLPEDLADCSK 161
            IP       +L     + N+   E+P  L G C  L+    S N    ++P     CS 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 162 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLS-RLIRLDLHQNR 218
           +  L +  N  +  L  + +     L  L  S N  +G  PE++ +LS  L+ LDL  N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 219 IL-SIPSSISGCC--SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCVE 271
               I  ++      +L E Y+ NN  +  +P  L   S+L +L L  N L       + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +   +L  L L  N L G +P E+  + TL  L+L  N L         G  P+ L    
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT 490

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
           +                       L+     +SL    L+  IP  I     +  L LS 
Sbjct: 491 N-----------------------LNW----ISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKI--------------------KDWPDAILTSLSS 428
           NS    +P EL  C SL  L L+ N                             + +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 429 LSCLKLDNNPLR---QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
                   N L           + +      +++  +     +P F +   +  L +   
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 486 QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPE 515
            L    P +I  +  L IL+L  N +  SIP+
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  177 bits (451), Expect = 4e-48
 Identities = 111/488 (22%), Positives = 185/488 (37%), Gaps = 79/488 (16%)

Query: 47  LQKLILAHNNIE-KLKEDLR-NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           LQ L LA N    ++ + L      LT L++S N     +P   G   +L+SL +S N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 104 M-KIPDE-IGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158
             ++P + +     L   D S N+   ELP SL     +L     S+N  +  +  +L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
             K +  +L ++ N  T      +++ + L  L  S N L+G  P ++GSLS+L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCV 270
            N +   IP  +    +L    +  N L+  +P+ L   + L  + L +N+L       +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              +  L++L LSNNS SG +P E+G   +L  L L  N          NG  PA +   
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--------NGTIPAAMFKQ 561

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
             ++  N  +           M          L  +G+       ++         +++ 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI----RSEQLNRLSTRNPCNITS 617

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
                   P   +  S+  L +S N +      I   + S+                   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YIPKEIGSMP------------------ 656

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
               L IL+L +N               +             P ++  L+ L ILDLS N
Sbjct: 657 ---YLFILNLGHN--------------DIS---------GSIPDEVGDLRGLNILDLSSN 690

Query: 509 SLQ-SIPE 515
            L   IP+
Sbjct: 691 KLDGRIPQ 698

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  162 bits (413), Expect = 5e-43
 Identities = 135/537 (25%), Positives = 207/537 (38%), Gaps = 92/537 (17%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           S++LS++ L    + V  +               L+ L L++++I       +    LT 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSL---------LSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 73  LNVSHNKLS-ELPAA--IGELHMLKSLDVSFNSI-MKIPDEIGSA-TALVKFDCSSNQL- 126
           L++S N LS  +     +G    LK L+VS N++        G    +L   D S+N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 127 KELPSSL---GRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
                       C  L     S N I+  +   ++ C  +  LDV  N  +      +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLGD 221

Query: 183 WTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
            + L  L  S N L+G     I + + L  L++  N+ +  IP       SL    +  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 241 ALS-ALPAEL-GKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPP 292
             +  +P  L G    L  LDL  N         +   +C   L  L LS+N+ SG LP 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCS-LLESLALSSNNFSGELPM 336

Query: 293 E-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           + + KM  L+ L L+ N          +G  P  L  L + L                  
Sbjct: 337 DTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASL------------------ 370

Query: 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAG--EITKLDLSRNSIQ-ELPPELSSCASLQT 407
                     L L   N S  I   + +     + +L L  N    ++PP LS+C+ L +
Sbjct: 371 --------LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 408 LILSRNK----IKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN- 461
           L LS N     I       L SLS L  LKL  N L  ++P +    +  L+ L L +N 
Sbjct: 423 LHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND 477

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPE 515
               +P     S+  +L  + L   +L  E P  I RL+ L IL LS NS   +IP 
Sbjct: 478 LTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (341), Expect = 1e-33
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+ LIL  N++  ++   L N   L  +++S+N+L+ E+P  IG L  L  L +S NS  
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 105 -KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             IP E+G   +L+  D ++N     +P+++ +        A+N         + +    
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRYVYIKNDGMK 584

Query: 163 SKLDVEGN--KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRI 219
            +    GN  +   + +  +   +       +  +  G    T  +   ++ LD+  N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 220 L-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR 276
              IP  I     L    +G+N +S ++P E+G L  L  LDL SN+L          L 
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
            L+ +DLSNN+LSG  PE+G+  T        NP
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (450), Expect = 1e-49
 Identities = 108/485 (22%), Positives = 191/485 (39%), Gaps = 58/485 (11%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  I
Sbjct: 26  KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDI 83

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T LV    ++NQ+ ++   L    NL+     NN IT +   L + + +++L+
Sbjct: 84  T-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N ++ +S   ++  T L +L     + +   + + +L+ L RLD+  N++ S  S +
Sbjct: 141 LSSNTISDISA--LSGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSNKV-SDISVL 195

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +   +L      NN +S +   LG L+ L  L L+ NQLK+    A    L+ LDL+NN 
Sbjct: 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           +S L P +  +T L +L L  N +  + S L        L  L                 
Sbjct: 255 ISNLAP-LSGLTKLTELKLGANQISNI-SPLAG------LTAL----------------- 289

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                          L L    L  I   I     +T L L  N+I ++ P +SS   LQ
Sbjct: 290 -------------TNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQ 334

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 465
            L    NK+ D     L +L++++ L   +N +  +      ++  +  L L+     + 
Sbjct: 335 RLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQK 525
           P N  + +   +            AP  I         D++ N      EV+Y F     
Sbjct: 391 PVN--YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVT 448

Query: 526 KSINT 530
               T
Sbjct: 449 IGKGT 453

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (338), Expect = 4e-34
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 30/370 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L +N I  + + L+NL  L  L +S N +S++ A +  L  L+ L    N +  +
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + D SSN++ ++   L +  NL    A+NN I+ +   L   + + +L 
Sbjct: 171 K-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELS 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           + GN+L  +    +AS T LT+L  + N ++ +   +  L++L  L L  N+I +I   +
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +G  +L    +  N L  +   +  L  L  L L+ N + +    +   +L  L   NN 
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           +S +   +  +T +  L    N +  L   ++L        +  L            +  
Sbjct: 343 VSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR------ITQL----------GLNDQ 385

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                 +  + +V+              P+ I + G  T+ D++ N          + + 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 405 LQTLILSRNK 414
             T+      
Sbjct: 446 PVTIGKGTTT 455

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  172 bits (439), Expect = 1e-49
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (362), Expect = 1e-38
 Identities = 55/388 (14%), Positives = 107/388 (27%), Gaps = 98/388 (25%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSFNSI 103
             Q+   A  N         N     +   +   L      + +       +L++    +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
            + PD+    + L      +  L ELP ++ +   L     + N + +LP  +A  +++ 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +L +                            L  +PE + S                  
Sbjct: 154 ELSIRAC-----------------------PELTELPEPLASTD--------------AS 176

Query: 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
               G  +L    +    + +LPA +  L  L                        L + 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNL----------------------KSLKIR 214

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           N+ LS L P I  +  L +L L G                          P         
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALR-------------------NYPPI------- 248

Query: 344 TKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITKLDLSRNS-IQELPPELSS 401
                      L    K L L+  + L  +P +I    ++ KLDL     +  LP  ++ 
Sbjct: 249 -----FGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSL 429
             +   +++  +           +  + 
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  132 bits (334), Expect = 1e-34
 Identities = 56/395 (14%), Positives = 110/395 (27%), Gaps = 84/395 (21%)

Query: 107 PDEIGSATALVKFDCS-SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                 ++         S  L+     L +     +    +          A+ +     
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA---DRNRWHSAWRQANSNNPQIE 61

Query: 166 DVEGNKLTVLSNNL-IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
              G  L   ++ L  A+      L      L   P+    LS L  + +    ++ +P 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           ++     L    +  N L ALPA +  L++L  L + +                      
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC--------------------- 160

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
             L+ LP  +       +                       L  L+              
Sbjct: 161 PELTELPEPLASTDASGEH--------------------QGLVNLQ-------------- 186

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                            L LE   + ++P+ I     +  L +  + +  L P +     
Sbjct: 187 ----------------SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           L+ L L     ++++P       + L  L L D + L  +P      +  L+ LDL    
Sbjct: 231 LEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCV 288

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
            ++ LP     + LP    + +      +      
Sbjct: 289 NLSRLPSL--IAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (320), Expect = 8e-33
 Identities = 62/375 (16%), Positives = 111/375 (29%), Gaps = 65/375 (17%)

Query: 149 ITSLPEDLADCSKMSKLDVEG-NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
           + S        S    L  +G   L    + L    +       +            + +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN 56

Query: 208 RLIRLDLHQNRILSIPSSISGCCS--LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
                      + +    +            + +  L   P +  +LS L  + + +  L
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 266 KEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTP 323
            E      Q   L  L L+ N L  LP  I  +  LR+L +   P L  L   L +    
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
              + L +                       L    + L LE   + ++P+ I     + 
Sbjct: 177 GEHQGLVN-----------------------L----QSLRLEWTGIRSLPASIANLQNLK 209

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
            L +  + +  L P +     L+ L L                            LR  P
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLR-----------------------GCTALRNYP 246

Query: 444 SDGFKDIPMLQILDLSY--NIASLPENPPFSSLPHLQELYLRR-MQLREAPTDILRLQQL 500
              F     L+ L L    N+ +LP +     L  L++L LR  + L   P+ I +L   
Sbjct: 247 PI-FGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 501 RILDLSQNSLQSIPE 515
            I+ +  +    + +
Sbjct: 304 CIILVPPHLQAQLDQ 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  175 bits (447), Expect = 2e-49
 Identities = 97/472 (20%), Positives = 174/472 (36%), Gaps = 52/472 (11%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIMK 105
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE   +    +       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                       + + ++  L  LP       +L    AS N +T LPE       +   
Sbjct: 71  --------RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +     L+ L          L  L  S N L  +PE + + S L  +D+  N +  +P  
Sbjct: 120 NNNLKALSDLPPL-------LEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL 171

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
                SL     GNN L  LP EL  L  L  +   +N LK+       L    +   NN
Sbjct: 172 PP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNN 225

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L  L PE+  +  L  +    N L+TL     +     +     + LPE   S      
Sbjct: 226 ILEEL-PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 346 EDL-ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
            +   +  + L      L+     + ++         + +L++S N + ELP        
Sbjct: 285 SENIFSGLSELPPNLYYLNASSNEIRSLCDLP---PSLEELNVSNNKLIELPALPP---R 338

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
           L+ LI S N + + P+       +L  L ++ NPLR+ P         ++ L ++ ++A 
Sbjct: 339 LERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPD----IPESVEDLRMNSHLAE 390

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
           +PE        +L++L++    LRE P      + +  L ++   +    E 
Sbjct: 391 VPE-----LPQNLKQLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYEF 434

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  175 bits (446), Expect = 3e-49
 Identities = 94/449 (20%), Positives = 175/449 (38%), Gaps = 73/449 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
           + L   +   + L E         L  L+ S+N +  L        +L +L ++ N L  
Sbjct: 280 TFLDVSENIFSGLSELPPN-----LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE 331

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
           L +          L+ L      N            +     L    K+L +E   L   
Sbjct: 332 LPALPPR------LERL--IASFNH-----------LAEVPELPQNLKQLHVEYNPLREF 372

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           P        +  L ++ + + E+P       +L+ L +  N ++++PD       S+  L
Sbjct: 373 PDIP---ESVEDLRMN-SHLAEVPELPQ---NLKQLHVETNPLREFPD----IPESVEDL 421

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++++  +        +    L+     ++
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  175 bits (446), Expect = 3e-49
 Identities = 110/499 (22%), Positives = 189/499 (37%), Gaps = 68/499 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPL--LT 71
               + +L ++P E  +N     E    W   +           E     LR+       
Sbjct: 16  PLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +++  LS LP     L   +SL  S NS+ ++P+   S  +L+  + +   L +LP 
Sbjct: 75  ELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            L   L +S     NN +  LPE L + S +  +DV+ N L  L +        L  + A
Sbjct: 132 LL-EYLGVS-----NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA 180

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
             N L  +PE + +L  L  +    N +  +P       SL     GNN L  LP EL  
Sbjct: 181 GNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQN 235

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L  L T+   +N LK        L    L++ +N L+ LP        L  L ++ N   
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPSLE--ALNVRDNYLTDLPELPQS---LTFLDVSENIFS 290

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L     N      L YL      NE          L  +   L    +EL++    L  
Sbjct: 291 GLSELPPN------LYYLN--ASSNEIRS-------LCDLPPSL----EELNVSNNKLIE 331

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
           +P+       + +L  S N + E+P    +   L+ L +  N ++++PD       S+  
Sbjct: 332 LPALP---PRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPD----IPESVED 381

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L+++++ L +VP         L+ L +  N +   P+         +++L +   ++ + 
Sbjct: 382 LRMNSH-LAEVPEL----PQNLKQLHVETNPLREFPD-----IPESVEDLRMNSERVVDP 431

Query: 491 PTDIL-RLQQLRILDLSQN 508
                    +L       +
Sbjct: 432 YEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  148 bits (377), Expect = 1e-39
 Identities = 85/441 (19%), Positives = 153/441 (34%), Gaps = 77/441 (17%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  L PE+  +  L  +    N L+ L    ++  
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS-- 216

Query: 322 TPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
               L+ +         LPE             +     L      +  +   L  +P  
Sbjct: 217 ----LESIVAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDL 255

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 +  L++  N + +LP       SL  L +S N      +       +L  L   
Sbjct: 256 P---PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSE----LPPNLYYLNAS 305

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           +N +R +        P L+ L++S N +  LP     +  P L+ L      L E P   
Sbjct: 306 SNEIRSLCD----LPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPELP 356

Query: 495 LRLQQLRILDLSQNSLQSIPE 515
              Q L+ L +  N L+  P+
Sbjct: 357 ---QNLKQLHVEYNPLREFPD 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  174 bits (443), Expect = 5e-48
 Identities = 103/525 (19%), Positives = 181/525 (34%), Gaps = 77/525 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           L+LS   ++ + +  Y++               L  LIL  N I+ L       L  L  
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSH------------LSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSI--MKIPDEIGSATALVKFDCSSNQLKEL 129
           L      L+ L    IG L  LK L+V+ N I   K+P+   + T L   D SSN+++ +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 130 PSSLGRCLNLSDFKA-----SNNCITSLPEDLADCSKMSKLDVEGNKLTV-LSNNLIASW 183
             +  R L+           S N +  +        ++ KL +  N  ++ +    I   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 184 TMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRI-------LSIPSSISGCCSL 232
             L                      +L  L  L + + R+         I    +   ++
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
           + F + +  +  +  +         L+L + +  ++     +  L  L  ++N       
Sbjct: 285 SSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNKGGNAFS 342

Query: 293 EIGKMTTLRKLLLTGNPLRTL-RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           E+  + +L  L L+ N L      S  +  T +L                          
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL-------------------------- 375

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLI 409
                   K L L    +  + S      ++  LD   ++++++       S  +L  L 
Sbjct: 376 --------KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           +S    +   + I   LSSL  LK+  N        D F ++  L  LDLS   +  L  
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
              F+SL  LQ L +   QL+  P  I  RL  L+ + L  N   
Sbjct: 488 TA-FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (413), Expect = 6e-44
 Identities = 98/455 (21%), Positives = 160/455 (35%), Gaps = 39/455 (8%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +    +    D S N L+ L S S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            +      S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL----GTLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++    L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTG------NPLRTLR 314
            +      A + +RL  L L NN  S    +  I  +  L    L          L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL------------ITMATRLSVTSKEL 362
            S + G     ++  R    +    +       L            I      S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI--KDWPD 420
            LE +N         +   + +L  + N       E+    SL+ L LSRN +  K    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
                 +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 480 LYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSI 513
           L +     R A   I   L  L +L ++ NS Q  
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 2e-43
 Identities = 98/534 (18%), Positives = 166/534 (31%), Gaps = 88/534 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +      +   +P+ +                   + L L+ N +  L      + P L 
Sbjct: 11  TYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 130 PS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            +  +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 187 T----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE------ 234
                 L  S N +N +        RL +L L  N      + + I G   L        
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLS 288
            +     L       L  L  L   +     L  Y  +   L      +S   L + ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            +          + L L                    LK L                   
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKF--------GQFPTLKLKSL------------------- 327

Query: 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL---PPELSSCASL 405
                      K L+          SE+     +  LDLSRN +              SL
Sbjct: 328 -----------KRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IA 463
           + L LS N +       L  L  L  L   ++ L+Q+     F  +  L  LD+S+    
Sbjct: 376 KYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 464 SLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSIPE 515
                  F+ L  L+ L +     +E   P     L+ L  LDLSQ  L+ +  
Sbjct: 435 VAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (407), Expect = 5e-43
 Identities = 89/425 (20%), Positives = 159/425 (37%), Gaps = 28/425 (6%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +    S  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 303

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
              Q L L   K   +P   L SL  L+     +N      S    D+P L+ LDLS N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 463 ASLPENPP--FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIF 520
            S              L+ L L    +    ++ L L+QL  LD   ++L+ + E   +F
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVF 417

Query: 521 VMLQK 525
           + L+ 
Sbjct: 418 LSLRN 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (377), Expect = 6e-39
 Identities = 95/479 (19%), Positives = 160/479 (33%), Gaps = 60/479 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L L+   ++ +    +                 LQKL+    N+  L+   + +L  L 
Sbjct: 80  TLILTGNPIQSLALGAFSGLSS------------LQKLVAVETNLASLENFPIGHLKTLK 127

Query: 72  VLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKIPDEI-----GSATALVKFDCSSN 124
            LNV+HN +     P     L  L+ LD+S N I  I               +  D S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE---------GNKLTVL 175
            +  +     + + L      NN  +           ++ L+V             L   
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 176 SNNLIASWTMLTELIASKNLL----NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS 231
             + +     LT        L    + + +    L+ +    L    I  +    S    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFG 305

Query: 232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL- 290
                + N      P    KL  L  L   SN+      E     L  LDLS N LS   
Sbjct: 306 WQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 291 --PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL---RSRLPENEDSEASTTK 345
                    T+L+ L L+ N + T+ S+ +       L++L    S L +  +     + 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSL 420

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSC 402
            +L             L +   +     + I+     +  L ++ NS QE       +  
Sbjct: 421 RNL-----------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            +L  L LS+ +++        SLSSL  L + +N L+ VP   F  +  LQ + L  N
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (326), Expect = 3e-32
 Identities = 91/455 (20%), Positives = 156/455 (34%), Gaps = 56/455 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK--EDLRNLPLL 70
            L     +L  + N    +               L++L +AHN I+  K  E   NL  L
Sbjct: 104 KLVAVETNLASLENFPIGHLKT------------LKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 71  TVLNVSHNKLSELPA-AIGELHMLK----SLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             L++S NK+  +    +  LH +     SLD+S N +  I         L K    +N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 126 LK---------ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
                       L       L L +F+   N        L     ++  +     L    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 177 NNLIASWTMLTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
           +++I  +  LT + +       +  + +          L+L   +    P+      SL 
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPTL--KLKSLK 328

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSG 289
                +N      +E+  L  L  LDL  N L      +        L  LDLS N +  
Sbjct: 329 RLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK-YLRS-RLPENEDSEASTTKED 347
           +      +  L  L    + L+ +    V      L+   +                   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--------RVAFNG 439

Query: 348 LITMATRLSVTSKELSLEGMNLSA-IPSEIWEAGE-ITKLDLSRNSIQELPPE-LSSCAS 404
           +    + L    + L + G +       +I+     +T LDLS+  +++L P   +S +S
Sbjct: 440 IFNGLSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           LQ L ++ N++K  PD I   L+SL  + L  NP 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 1e-22
 Identities = 51/163 (31%), Positives = 68/163 (41%), Gaps = 7/163 (4%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKI 415
           V +       +N   IP  +        LDLS N ++ L      S   LQ L LSR +I
Sbjct: 7   VPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +   D    SLS LS L L  NP++ +    F  +  LQ L      +ASL    P   L
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123

Query: 475 PHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPE 515
             L+EL +    ++    P     L  L  LDLS N +QSI  
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 44/247 (17%), Positives = 78/247 (31%), Gaps = 46/247 (18%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L L    +  I    +++   ++ L L+ N 
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKD 449
           IQ L     S  +SLQ L+     +    +  +  L +L  L + +N ++     + F +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILD 504
           +  L+ LDLS N I S+        L  +      L L    +        +  +L  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 505 LSQNSLQ 511
           L  N   
Sbjct: 207 LRNNFDS 213

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  175 bits (445), Expect = 6e-48
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L         L  
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPE---LRT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L    +L  + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +   L +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KE---LMVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  160 bits (407), Expect = 7e-43
 Identities = 95/460 (20%), Positives = 156/460 (33%), Gaps = 100/460 (21%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
           L   +S  T+ L  N + +     L  ++S               +   ++   L +   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 459 SYNIASLPENPP-------FSSLPHLQELYLRRMQLREAP 491
            + + +    P        F    +     L   +L E  
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  168 bits (428), Expect = 4e-46
 Identities = 95/541 (17%), Positives = 184/541 (34%), Gaps = 77/541 (14%)

Query: 11  SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPL 69
           SG  +  +RS   +P+ +                  ++ L L+ N I  +   DLR    
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAA---------------MKSLDLSFNKITYIGHGDLRACAN 51

Query: 70  LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLK 127
           L VL +  ++++ +   A   L  L+ LD+S N +  +     G  ++L   +   N  +
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 128 ELPSSLG-------RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 179
            L  +         + L + +        + +   D A  + +++L+++   L    +  
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGN----VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 180 IASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSSISG---------- 228
           + S   +  L    +    + E     LS +  L+L    +     S             
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 229 ------------CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276
                          L +       LS +  +   L+ LG  +   + +     +   + 
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           +  L +    L      +   +  ++++ +  + +  +  S         L++L   L E
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS--LEFL--DLSE 343

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW---EAGEITKLDLSRNSI 392
           N   E              L    + L L   +L ++            +T LD+SRN+ 
Sbjct: 344 NLMVEEYLKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
             +P        ++ L LS   I+     I  +L     L + NN L          +P 
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNNNLDSFSL----FLPR 452

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
           LQ L +S N + +L   P  S  P L  + + R QL+  P  I   L  L+ + L  N  
Sbjct: 453 LQELYISRNKLKTL---PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

Query: 511 Q 511
            
Sbjct: 510 D 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (387), Expect = 2e-40
 Identities = 80/421 (19%), Positives = 152/421 (36%), Gaps = 52/421 (12%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D  S     +PS L     +     S N IT +   DL  C+ +  L ++ +++  +  +
Sbjct: 11  DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 179 LIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAEF 235
              S   L  L  S N L+ +     G LS L  L+L  N   ++  +       +L   
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 236 YMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +G     S +       L+ L  L++ +  L+ Y  ++ +    +  L L  +  + L 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 292 PEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKYLRSRLPENEDSEASTTKEDLI 349
                 ++++R L L    L   + S +      + +K L  R     D           
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD----------- 237

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS-------- 401
                              L  +   I E  E+   D + N + +  P  S         
Sbjct: 238 --------------ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 402 -CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
              +++ L + +  +      + + L  +  + ++N+ +  VP    + +  L+ LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 461 N-IASLPENPP--FSSLPHLQELYLRRMQLRE---APTDILRLQQLRILDLSQNSLQSIP 514
           N +            + P LQ L L +  LR        +L L+ L  LD+S+N+   +P
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 515 E 515
           +
Sbjct: 404 D 404

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (260), Expect = 8e-24
 Identities = 56/336 (16%), Positives = 120/336 (35%), Gaps = 36/336 (10%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           S       D       SIPS ++   ++    +  N ++ +    L   + L  L L S+
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 264 QLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNG 320
           ++     +A      L  LDLS+N LS L     G +++L+ L L GNP +TL  + +  
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA- 379
               L       +        S  +       T L     EL ++ ++L    S+  ++ 
Sbjct: 121 NLTNLQTLRIGNVE-----TFSEIRRIDFAGLTSL----NELEIKALSLRNYQSQSLKSI 171

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            +I  L L  +    L        +S++ L L    +  +  + L      S +K     
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 439 LRQVPSDGFKDIPML------------------QILDLSYNIASLPENPPFSSLPHLQEL 480
              +  + F ++  L                   + D + + + +           ++ L
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 481 YLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
           ++ +  L    + +   L++++ + +  + +  +P 
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  162 bits (412), Expect = 2e-44
 Identities = 70/493 (14%), Positives = 167/493 (33%), Gaps = 54/493 (10%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA- 293

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
                   +  P    L  L+ +                             LS +G   
Sbjct: 294 ---YCCEDLPAPFADRLIALKRK-------------------------EHALLSGQGSET 325

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSS 428
             +  E        ++D  +   + +  ++     +  TL   +  + +       + + 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488
           L           ++     +  P+  +  +      +           +++  + + +  
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

Query: 489 EAPTDILRLQQLR 501
           +   +  RL++L 
Sbjct: 446 QLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (398), Expect = 3e-42
 Identities = 79/466 (16%), Positives = 157/466 (33%), Gaps = 28/466 (6%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKI-PDEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I ++  +   +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRT--LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           +     L    L GN      LR           +     +    ++ E  T        
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           A          +   + L      +        L    +  + L  E  + A  + +   
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHAL--------LSGQGSETERLECERENQARQREIDAL 344

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           + + +   D +     +   L+     L +  S+G +    L             ++   
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT- 403

Query: 472 SSLPHLQELY--LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
                LQ L   ++R +        ++   +R  D+ Q+    + E
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 4e-34
 Identities = 54/374 (14%), Positives = 124/374 (33%), Gaps = 30/374 (8%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L ++
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EH 173

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L   L  N           +  +  ++     K L L    L+ +  E   A  +T + L
Sbjct: 174 LN--LQYNF----------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 388 SRNSIQELPPELSSCASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
             N +  +   L    +L+   L  N           +    +    +    ++++    
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQN 279

Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHL-----QELYLRRMQLREAPTDILRLQQLR 501
            ++  +  +             P    L  L       L  +  +      +     + R
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 502 ILDLSQNSLQSIPE 515
            +D  +   +++ +
Sbjct: 340 EIDALKEQYRTVID 353

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (274), Expect = 8e-26
 Identities = 57/337 (16%), Positives = 103/337 (30%), Gaps = 74/337 (21%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 493 DILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSIN 529
            +   Q L   DL  N         +     + +++ 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (389), Expect = 3e-42
 Identities = 68/417 (16%), Positives = 151/417 (36%), Gaps = 77/417 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S                          + +L+++  L+L  N  LS  S +
Sbjct: 117 LNEDNISDISP-------------------------LANLTKMYSLNLGANHNLSDLSPL 151

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSN 284
           S    L    +  + +  +   +  L+ L +L L+ NQ+++  +     L  L       
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           N ++ + P +  MT L  L +  N +  L S L N      L  L               
Sbjct: 209 NQITDITP-VANMTRLNSLKIGNNKITDL-SPLAN------LSQL--------------- 245

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                            L +    +S I + + +  ++  L++  N I ++   L++ + 
Sbjct: 246 ---------------TWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQ 288

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           L +L L+ N++ +    ++  L++L+ L L  N +  +       +  +   D +  
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (341), Expect = 2e-35
 Identities = 64/421 (15%), Positives = 149/421 (35%), Gaps = 78/421 (18%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 152
             +L      I +I          ++       + ++ +      +++    +   + S+
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
              +   + +  L++ GN++T +S                          + +L +L  L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-------------------------LSNLVKLTNL 93

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
            +  N+I +  S++    +L E Y+  + +S +   L  L+K+ +L+L +N         
Sbjct: 94  YIGTNKI-TDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL 151

Query: 273 CQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
             +  L+ L ++ + +  + P I  +T L  L L  N +  + S L +      L  L  
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI-SPLAS------LTSL-- 201

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                          +     ++ I   +     +  L +  N 
Sbjct: 202 ----------------------------HYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232

Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451
           I +L P L++ + L  L +  N+I D     +  L+ L  L + +N +  +      ++ 
Sbjct: 233 ITDLSP-LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLS 287

Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL 510
            L  L L+ N + +         L +L  L+L +  + +    +  L ++   D +   +
Sbjct: 288 QLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVI 345

Query: 511 Q 511
           +
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (331), Expect = 4e-34
 Identities = 77/381 (20%), Positives = 148/381 (38%), Gaps = 54/381 (14%)

Query: 139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198
            +        I  +    AD ++  +  ++   +T +          +T+L+ +   +  
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           +   I  L+ L  L+L+ N+I  I   +S    L   Y+G N ++ + A L  L+ L  L
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+ + + +    A   ++  L+L  N        +  MT L  L +T + ++ + + + 
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIA 174

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
           N      L  L                                LSL    +  I S +  
Sbjct: 175 N------LTDL------------------------------YSLSLNYNQIEDI-SPLAS 197

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +       N I ++ P +++   L +L +  NKI D     L +LS L+ L++  N 
Sbjct: 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 439 LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR- 496
           +  +     KD+  L++L++  N I+ +      ++L  L  L+L   QL     +++  
Sbjct: 255 ISDIN--AVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 497 LQQLRILDLSQNSLQSIPEVT 517
           L  L  L LSQN +  I  + 
Sbjct: 310 LTNLTTLFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (317), Expect = 4e-32
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L++L L  +NI  +   L NL  +  LN+  N      + +  +  L  L V+ + +  +
Sbjct: 112 LRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I + T L     + NQ++++ S L    +L  F A  N IT +   +A+ ++++ L 
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK+T LS   +A+ + LT L    N ++ +   +  L++L  L++  N+I  I S +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI-SVL 283

Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +    L   ++ NN L     E +G L+ L TL L  N + +    A   ++   D +N 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

Query: 286 SLS 288
            + 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  119 bits (300), Expect = 8e-30
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L L  N+       L N+  L  L V+ +K+ ++   I  L  L SL +++N I  I
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI 192

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S T+L  F    NQ+ ++   +     L+  K  NN IT L   LA+ S+++ L+
Sbjct: 193 S-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSS 225
           +  N+++ ++   +   T L  L    N ++ +   + +LS+L  L L+ N++ +     
Sbjct: 250 IGTNQISDINA--VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
           I G  +L   ++  N ++ +   L  LSK+ + D  +  +K+
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  148 bits (376), Expect = 1e-40
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  136 bits (344), Expect = 3e-36
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (308), Expect = 3e-31
 Identities = 51/335 (15%), Positives = 111/335 (33%), Gaps = 23/335 (6%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L ++
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EH 173

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L   L  N           +  +  ++     K L L    L+ +  E   A  +T + L
Sbjct: 174 LN--LQYNF----------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 388 SRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
             N +  +   L    +L+   L  N              +     +    ++++     
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNE 280

Query: 448 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
           ++  +  +             P    L  L   + 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 1e-29
 Identities = 57/337 (16%), Positives = 103/337 (30%), Gaps = 74/337 (21%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 493 DILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSIN 529
            +   Q L   DL  N         +     + +++ 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (377), Expect = 2e-39
 Identities = 79/333 (23%), Positives = 128/333 (38%), Gaps = 47/333 (14%)

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-L 249
            +     +PE I   +    LDL +NRI ++     +    L E  +  N +SA+     
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLT 306
             L  L TL L SN+LK   +        L+ LD+S N +  L   +   +  L+ L + 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +     +G     L  L                               +L+LE 
Sbjct: 137 DNDLVYISHRAFSG-----LNSLE------------------------------QLTLEK 161

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILT 424
            NL++IP+E       +  L L   +I  +          L+ L +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
              +L+ L + +  L  VP    + +  L+ L+LSYN I+++  +     L  LQE+ L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLV 280

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
             QL        R L  LR+L++S N L ++ E
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (361), Expect = 2e-37
 Identities = 69/326 (21%), Positives = 122/326 (37%), Gaps = 23/326 (7%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
                 ++PE +   ++   LD+  N++  L+ +  AS+  L EL  ++N+++ +     
Sbjct: 19  HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLH 261
            +L  L  L L  NR+  IP  + +G  +L +  +  N +  L   +   L  L +L++ 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 262 SNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLV 318
            N L      A      L  L L   +L+ +P E    +  L  L L    +  +R    
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                  L  L+   +             D +T      +    LS+   NL+A+P    
Sbjct: 197 KR-----LYRLKVLEISHWP-------YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 378 EA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                +  L+LS N I  +    L     LQ + L   ++          L+ L  L + 
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN 461
            N L  +    F  +  L+ L L  N
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (337), Expect = 5e-34
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 4e-27
 Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 20/250 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  +   +         +P  I   T  R L L  N ++TL            L+ L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP--HLEELE-- 62

Query: 333 LPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           L EN  S        +L  +        + L L    L  IP  +      +TKLD+S N
Sbjct: 63  LNENIVSAVEPGAFNNLFNL--------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 391 SIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
            I  L   +     +L++L +  N +        + L+SL  L L+   L  +P++    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLREAPTDILRLQQLRILDLSQ 507
           +  L +L L +  I ++ +   F  L  L+ L +     L     + L    L  L ++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 508 NSLQSIPEVT 517
            +L ++P + 
Sbjct: 234 CNLTAVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 8e-27
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  148 bits (375), Expect = 2e-39
 Identities = 75/424 (17%), Positives = 136/424 (32%), Gaps = 79/424 (18%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            C +  L ++P                     LP  +      + +D+  N +  L+   
Sbjct: 16  ICINRGLHQVPE--------------------LPAHV------NYVDLSLNSIAELNETS 49

Query: 180 IASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            +    L  L   +          T   LS LI L L  N+ L + +             
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----------- 98

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPE 293
                         L+ L  L L    L    +     +    L +L L +N++  + P 
Sbjct: 99  -----------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 294 I--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                M     L LT N ++++    +          LR  L      + +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205

Query: 352 ATRLSVTS-KELSLEGMNLSAIPSE-IWEAGEITKL-------------DLSRNSIQELP 396
                 TS   L L G       ++  ++A   TK+                  + ++  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 397 PELS---SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
                    + ++T  LS++KI     ++ +  + L  L L  N + ++  + F  +  L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
             L+LS N + S+     F +L  L+ L L    +R         L  L+ L L  N L+
Sbjct: 326 LKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 512 SIPE 515
           S+P+
Sbjct: 385 SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  114 bits (288), Expect = 1e-27
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 73/433 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                +    D  N +  GL       + ++   L+ + +  L  S       +    L 
Sbjct: 257 GHTNFK----DPDNFTFKGLEA-----SGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
                                         +L+L    ++ I     W    + KL+LS+
Sbjct: 303 ------------------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
           N +  +   +  +   L+ L LS N I+   D     L +L  L LD N L+ VP   F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 449 DIPMLQILDLSYN 461
            +  LQ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 33/281 (11%), Positives = 79/281 (28%), Gaps = 46/281 (16%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
               C +        N  L  +P  P       +  + L+ N +  L  +  +      L
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELP-----AHVNYVDLSLNSIAELNETSFSRLQ--DL 56

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKL 385
           ++L+  + +         + +     + L      L L+      + +  +     +  L
Sbjct: 57  QFLK--VEQQTPG--LVIRNNTFRGLSSL----IILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 386 DLSRNSIQE--LPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
            L++ ++    L         SL+ L+L  N IK   P +   ++     L L  N ++ 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168

Query: 442 VPSDGFK----------DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           +  +              +  + + D++       +         +  L L     +E+ 
Sbjct: 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 492 TDI--------------LRLQQLRILDLSQNSLQSIPEVTY 518
                            L             + +     T+
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  145 bits (368), Expect = 2e-38
 Identities = 93/480 (19%), Positives = 161/480 (33%), Gaps = 70/480 (14%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +                                
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEID------------------------------- 270

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
              +T  T+L         EG        ++    ++  LD     I EL   LS    L
Sbjct: 271 ---LTHNTQL----IYFQAEGCRKIKEL-DVTHNTQLYLLDCQAAGITELD--LSQNPKL 320

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
             L L+  ++ +     ++  + L  L   N  ++   S     IP L     +     +
Sbjct: 321 VYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTIT 375

Query: 465 LPE----NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIF 520
           +P+    N   +       L      +   P D     Q       +N     P VTY F
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTF 435

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (377), Expect = 3e-38
 Identities = 107/527 (20%), Positives = 183/527 (34%), Gaps = 81/527 (15%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + L    S G+  +L     S+N I  + E       +  L  +      L+ N + S  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRV 190

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +          N           L  LD+  N      +              +NA+S 
Sbjct: 191 SVDWGKCMNPFRN---------MVLEILDVSGNGWTVDITGNF-----------SNAISK 230

Query: 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMT 298
             A  L     +       + +K+          +  +  LDLS+  +  L   +   + 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSV 357
            L+ L L  N +  +      G     L+ L   L  N   E  S+    L  +      
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV------ 340

Query: 358 TSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 416
               + L+  +++ I  + ++   ++  LDL  N++  +        S+  + LS NK+ 
Sbjct: 341 --AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV 394

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSL 474
                +     + + + L  N L  +    F   +P LQIL L+ N  +S   +   S  
Sbjct: 395 T----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 475 PHLQELYLRRMQLREAPTDILR------LQQLRILDLSQNSLQSIPE 515
           P L++L+L    L+ A    L       L  L++L L+ N L S+P 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (376), Expect = 4e-38
 Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 37/390 (9%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
               +T +P+ L   +   +L +  N +  ++ +       L  L             E 
Sbjct: 12  RFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 203 IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE---LGKLSKLGTL 258
             +L  L  LDL  ++I  +      G   L E  +    LS    +      L  L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 259 DLHSNQLKEYCVEAC---QLRLSVLDLSNNSLSGLPPEIGK---MTTLRKLLLTGNPLRT 312
           DL  NQ++   +         L  +D S+N +  +     +     TL    L  N L +
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
              S+  G      + +   L   + S    T +     +  +S +     +   ++   
Sbjct: 189 R-VSVDWGKCMNPFRNMV--LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI--- 242

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPEL---SSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                            ++I++         + +S++ L LS   +      +  +L  L
Sbjct: 243 ----------MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLR 488
             L L  N + ++  + F  +  LQ+L+LSYN +  L  +  F  LP +  + L++  + 
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIA 351

Query: 489 EAPTDILR-LQQLRILDLSQNSLQSIPEVT 517
                  + L++L+ LDL  N+L +I  + 
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (369), Expect = 3e-37
 Identities = 95/501 (18%), Positives = 172/501 (34%), Gaps = 63/501 (12%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL---KEDLRNLPLL 70
           L+L +  +  +  + ++                L +L L    +          RNL  L
Sbjct: 78  LDLGSSKIYFLHPDAFQGLF------------HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 71  TVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIPDEI---GSATALVKFDCSSNQ 125
           T L++S N++  L    + G+L+ LKS+D S N I  + +          L  F  ++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           L    S       +  R + L     S N  T                   N ++     
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 179 LIASWTMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
            +     +       + +    +      + S +  LDL    + S+ S +      L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLP 291
             +  N ++ +  E    L  L  L+L  N L E          +++ +DL  N ++ + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 292 PEI-GKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +    +  L+ L L  N L T      +    ++G     L  +         SE    
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE---- 398
             D++    R+    + L L     S+   +   +    + +L L  N +Q         
Sbjct: 415 NLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 399 --LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 + LQ L L+ N +   P  + + L++L  L L++N L  +  +       L+IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 457 DLSYNIASLPENPPFSSLPHL 477
           D+S N    P    F SL  L
Sbjct: 532 DISRNQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (367), Expect = 5e-37
 Identities = 88/507 (17%), Positives = 160/507 (31%), Gaps = 103/507 (20%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
            D +       N+ ++    + L     L +S N +  + A +   L  L+ L++     
Sbjct: 4   FDGRIAFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSK 161
            + I                         +     NL      ++ I  L  D       
Sbjct: 61  PLTID----------------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221
           + +L +    L+                               +L  L RLDL +N+I S
Sbjct: 99  LFELRLYFCGLSDAVLK---------------------DGYFRNLKALTRLDLSKNQIRS 137

Query: 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ----LRL 277
           +                      L    GKL+ L ++D  SNQ+   C    +      L
Sbjct: 138 LY---------------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 278 SVLDLSNNSLSGLPP-------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           S   L+ NSL               +   L  L ++GN      +   +        +  
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTS---KELSLEGMNLSAIPSEIWE-AGEITKLD 386
                   +             T   +     + L L    + ++ S ++E   ++  L+
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
           L+ N I ++  E      +LQ L LS N + +   +    L  ++ + L  N +  +   
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 446 GFKDIPMLQILDLSYN-IASLPENP----------PFSSLPHL----QELYLRRMQLREA 490
            FK +  LQ LDL  N + ++   P             +LP +      ++L   +L   
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 491 PTD--ILRLQQLRILDLSQNSLQSIPE 515
                +LR+  L+IL L+QN   S   
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 35/211 (16%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE----------------- 398
           S   +       NL+ +P  +       +L LS N I+ +                    
Sbjct: 3   SFDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 399 ---------LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGF 447
                      +  +L+ L L  +KI          L  L  L+L    L    +    F
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI---LRLQQLRIL 503
           +++  L  LDLS N I SL  +P F  L  L+ +     Q+          L+ + L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 504 DLSQNSLQSIPEVTYIFVMLQKKSINTELVD 534
            L+ NSL S   V +   M   +++  E++D
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 3e-37
 Identities = 69/360 (19%), Positives = 135/360 (37%), Gaps = 41/360 (11%)

Query: 168 EGNKLTVLSNNLIASWTM-----LTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILS 221
               + + + ++   +          +    + +  +P   + S  ++  L+L+  +I  
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 222 IPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRL 277
           I +   +   ++ + YMG NA+  LP      +  L  L L  N L            +L
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 278 SVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-RLPE 335
           + L +SNN+L  +  +     T+L+ L L+ N L  +          +L+  L    +  
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------DLSLIPSLFHANVSY 195

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           N  S         + +   +    +EL     +++ +   +    E+T L L  N++ + 
Sbjct: 196 NLLST--------LAIPIAV----EELDASHNSINVVRGPVNV--ELTILKLQHNNLTDT 241

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              L +   L  + LS N+++         +  L  L + NN L  +     + IP L++
Sbjct: 242 A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKV 299

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           LDLS+N +  +  N        L+ LYL    +            L+ L LS N      
Sbjct: 300 LDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNS 355

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (354), Expect = 6e-37
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 81/430 (18%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 134 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 224

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 225 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 284 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 307

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 363

Query: 430 SCLKLDNNPL 439
           +   +D+   
Sbjct: 364 ARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  139 bits (351), Expect = 2e-36
 Identities = 67/400 (16%), Positives = 132/400 (33%), Gaps = 56/400 (14%)

Query: 64  LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCS 122
             ++ +       +    ++      L+  K +    +++ K+P  +  S   +   + +
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 123 SNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLI 180
             Q++E+ + +      +       N I  LP     +   ++ L +E N L+ L   + 
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 181 ASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
            +   LT L  S N L  +  +T  + + L  L L  NR+  +   +S   SL    +  
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N LS L         +  LD   N +           L++L L +N+L+     +     
Sbjct: 196 NLLSTLA----IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTA-WLLNYPG 249

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L ++ L+ N L  +            ++ L                              
Sbjct: 250 LVEVDLSYNELEKIMYHPFVK-----MQRLE----------------------------- 275

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L +    L A+         +  LDLS N +  +         L+ L L  N I    
Sbjct: 276 -RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDL 458
            +   +L +   L L +N          F+++    + D 
Sbjct: 335 LSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (304), Expect = 4e-30
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 11/159 (6%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD 417
           + L+L  + +  I +     A  I KL +  N+I+ LPP    +   L  L+L RN +  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPH 476
            P  I  +   L+ L + NN L ++  D F+    LQ L LS N +  +      S +P 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPS 187

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           L    +    L    + +     +  LD S NS+  +  
Sbjct: 188 LFHANVSYNLL----STLAIPIAVEELDASHNSINVVRG 222

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 9e-18
 Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 377 WEAGEITKLDLSRNSIQELPPELS------SCASLQTLILSRNKIKDWPDAILTSLSSLS 430
            ++            I     ++       +  + + +    + ++  P A+L S   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            L L++  + ++ +  F     +Q L + +N I  LP +  F ++P L  L L R  L  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSS 131

Query: 490 APTDILR-LQQLRILDLSQNSLQSIPE 515
            P  I     +L  L +S N+L+ I +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIED 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  139 bits (353), Expect = 5e-36
 Identities = 92/510 (18%), Positives = 177/510 (34%), Gaps = 59/510 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ S   L  VP ++               +     L ++ N I +L   D+ +L  L 
Sbjct: 4   LVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLR 48

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           +L +SHN++  L          L+ LD+S N ++KI         L   D S N    LP
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP 106

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                                + ++  + S++  L +    L   S   IA   +   L+
Sbjct: 107 ---------------------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
                     E    L       LH     +          ++   + N  LS +   L 
Sbjct: 146 VLGETYGE-KEDPEGLQDFNTESLHIVFPTN--KEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
                  L + +       +    L L+ ++ + NS   +   +   TT+    ++   L
Sbjct: 203 DNKCSYFLSILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL 259

Query: 311 RTLRSSLVNGPTPALLKYLR-SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           +          +   LK L   ++  +      +   ++ +     + T     +  M  
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSL 426
            +  S          LD S N + +   E       L+TLIL  N++K+      + T +
Sbjct: 320 PSKISPF------LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
            SL  L +  N +      G       L  L++S N   L +       P ++ L L   
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPRIKVLDLHSN 431

Query: 486 QLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           +++  P  +++L+ L+ L+++ N L+S+P+
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (344), Expect = 7e-35
 Identities = 82/450 (18%), Positives = 158/450 (35%), Gaps = 26/450 (5%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
              +   + + +  + +     S  +    L  S N + D        L+ L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 438 PLRQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
            L+++   ++    +  LQ LD+S N ++   +    S    L  L +    L +     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 495 LRLQQLRILDLSQNSLQSIPEVTYIFVMLQ 524
           L   ++++LDL  N ++SIP+       LQ
Sbjct: 419 L-PPRIKVLDLHSNKIKSIPKQVVKLEALQ 447

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 2e-23
 Identities = 93/484 (19%), Positives = 163/484 (33%), Gaps = 87/484 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           LN+S   + ++      +               L+ LI++HN I+ L     +    L  
Sbjct: 26  LNISQNYISELWTSDILSL------------SKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP 130
           L++SHNKL ++         LK LD+SFN+   +P   E G+ + L     S+  L++  
Sbjct: 74  LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                 LN+S             ED       +   +     T    + I   ++ T   
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 191 AS-----------------KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC---- 229
                                L         S   L  ++   N  + I   +       
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 230 ---------------------CSLAEFYM---GNNALSALPAEL-GKLSKLGTLDLHSNQ 264
                                 SL    +    ++      + +    S +   +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 265 LKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGP 321
            +   +           LD SNN L+    E  G +T L  L+L  N L+ L  S +   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL--SKIAEM 369

Query: 322 TPAL--LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA--IPSEIW 377
           T  +  L+ L   + +N            ++   +    S   SL  +N+S+  +   I+
Sbjct: 370 TTQMKSLQQLD--ISQNS-----------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 378 EA--GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 I  LDL  N I+ +P ++    +LQ L ++ N++K  PD I   L+SL  + L 
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 436 NNPL 439
            NP 
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.6 bits (230), Expect = 4e-20
 Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 7/178 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPD 420
           +      L  +P ++  + + T L++S+N I EL    + S + L+ LI+S N+I+    
Sbjct: 5   VDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
           ++      L  L L +N L ++      +   L+ LDLS+N   +LP    F ++  L+ 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQ 537
           L L    L ++    +    +  + L         E          +S++       +
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (349), Expect = 3e-35
 Identities = 72/386 (18%), Positives = 135/386 (34%), Gaps = 61/386 (15%)

Query: 143 KASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASW-----TMLTELIASKNLL 196
           +   N     PE     S +    V     + + + ++   +          +    + +
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 197 NGMP-ETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLS 253
             +P   + S  ++  L+L+  +I  I +   +   ++ + YMG NA+  LP  +   + 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 254 KLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
            L  L L  N L            +L+ L +SNN+L  +  +     T+L+ L L+ N L
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
             +          +L+  L                                 ++    LS
Sbjct: 184 THV--------DLSLIPSLF------------------------------HANVSYNLLS 205

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
            +   I     + +LD S NSI  +   +     L  L L  N + D     L +   L 
Sbjct: 206 TLAIPI----AVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW--LLNYPGLV 257

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            + L  N L ++    F  +  L+ L +S N + +L        +P L+ L L    L  
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLH 315

Query: 490 APTDILRLQQLRILDLSQNSLQSIPE 515
              +  +  +L  L L  NS+ ++  
Sbjct: 316 VERNQPQFDRLENLYLDHNSIVTLKL 341

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  136 bits (343), Expect = 2e-34
 Identities = 81/304 (26%), Positives = 123/304 (40%), Gaps = 29/304 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L   + +N+PLLT
Sbjct: 79  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   + T+L     SSN+L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
             SL    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 187 DLSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 237

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 238 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSH 354

Query: 308 NPLR 311
           N   
Sbjct: 355 NDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  135 bits (340), Expect = 5e-34
 Identities = 90/513 (17%), Positives = 183/513 (35%), Gaps = 50/513 (9%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 131 SSL-GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
             +      L+    SNN +  + +D     + +  L +  N+LT +  +LI S   L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFH 196

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
              S NLL     T+     +  LD   N I  +   +     L    + +N L+     
Sbjct: 197 ANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW- 249

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           L     L  +DL  N+L++          RL  L +SNN L  L      + TL+ L L+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +  +         L+ L   L  N           ++T+      T K L+L  
Sbjct: 310 HNHLLHVERNQPQFDR---LENL--YLDHNS----------IVTLKLSTHHTLKNLTLSH 354

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
            +                 +++R ++ +          L+  +  +   K + D +L  +
Sbjct: 355 NDWDCNSLRALFR------NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486
           +  S +      +++          +  +  LS+ I      P   +     E+   R +
Sbjct: 409 ALTSVV----EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 487 LREAPTDILR-LQQLRILDLSQNSLQSIPEVTY 518
           +++   + ++  Q L+ L    ++      +  
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPK 497

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (323), Expect = 3e-33
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  109 bits (274), Expect = 1e-26
 Identities = 62/292 (21%), Positives = 105/292 (35%), Gaps = 52/292 (17%)

Query: 200 PETIGSLSRLIRLDLHQNRI---LSIPSSISGCCSLAEFYMGN-NALS-ALPAELGKLSK 254
            +T     R+  LDL    +     IPSS++    L   Y+G  N L   +P  + KL++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 255 LGTLDLHSNQLK-EYCVEACQL-RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR 311
           L  L +    +         Q+  L  LD S N+LSG LPP I  +  L  +   GN + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI- 161

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS- 370
                  +G  P                                      +++    L+ 
Sbjct: 162 -------SGAIPDSYGSFSKLFTS--------------------------MTISRNRLTG 188

Query: 371 AIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIK-DWPDAILTSLSS 428
            IP        +  +DLSRN ++ +      S  + Q + L++N +  D     +    +
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKN 245

Query: 429 LSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHL 477
           L+ L L NN +   +P  G   +  L  L++S+N     +P+          
Sbjct: 246 LNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (268), Expect = 9e-26
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 48/250 (19%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G            GP P  +  L   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKL--- 100

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNS 391
                               T+L      L +   N+S AIP  + +   +  LD S N+
Sbjct: 101 --------------------TQLHY----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 392 IQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLR-QVPSDGFK 448
           +   LPP +SS  +L  +    N+I    PD+  +     + + +  N L  ++P     
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 449 DIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506
               L  +DLS N+          F S  + Q+++L +  L      +   + L  LDL 
Sbjct: 197 L--NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 507 QNSLQ-SIPE 515
            N +  ++P+
Sbjct: 253 NNRIYGTLPQ 262

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 35/189 (18%)

Query: 361 ELSLEGMNLS---AIPSEIWEAGEITKLDLS-RNSIQ-ELPPELSSCASLQTLILSRNKI 415
            L L G+NL     IPS +     +  L +   N++   +PP ++    L  L ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 416 K-DWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN---------IAS 464
               PD + + + +L  L    N L   +P      +P L  +    N           S
Sbjct: 114 SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 465 LPENPPFSSLPH---------------LQELYLRRMQLR-EAPTDILRLQQLRILDLSQN 508
             +     ++                 L  + L R  L  +A       +  + + L++N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 509 SLQ-SIPEV 516
           SL   + +V
Sbjct: 232 SLAFDLGKV 240

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  128 bits (322), Expect = 1e-31
 Identities = 92/512 (17%), Positives = 175/512 (34%), Gaps = 65/512 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ SNR+L  VP ++                   + L L+ N+I +L+  D+  L  L 
Sbjct: 35  MVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           VL +SHN++  L   +      L+ LDVS N +  I        +L   D S N    LP
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLP 137

Query: 131 SS--LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                G    L+    S      L         +S + ++     +      +     T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           ++      N +     ++S      L  + I     +     +          L  +  +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
             + +   ++ L                +  L++ N +++             +   +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRP--------VEYLNIYNLTITERID-------REEFTYSET 302

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L++L                   +       +      +        ++  +     M 
Sbjct: 303 ALKSLM---------------IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKDWPDA--ILTS 425
               PS        T L+ ++N   +   +  S    LQTLIL RN +K++     +  +
Sbjct: 348 CPPSPS------SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLP-HLQELYLR 483
           +SSL  L +  N L     D        + +L+LS N   L  +  F  LP  ++ L L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGS-VFRCLPPKVKVLDLH 458

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
             ++   P D+  LQ L+ L+++ N L+S+P+
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  117 bits (294), Expect = 4e-28
 Identities = 71/389 (18%), Positives = 128/389 (32%), Gaps = 31/389 (7%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
           SN  +T +P+DL    +   L +  N ++ L    I+  + L  L  S N +  +   + 
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
                L  LD+  NR+ +I        SL    +  N    LP   E G L+KL  L L 
Sbjct: 97  LFNQDLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 262 SNQLKE---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           + + ++     V    L   +LDL +  + G   E  ++     L L  +P       + 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                     L + +L +       T   +L    T L+VT + +         +    W
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
               +  L++   +I E                             T+L SL    + N 
Sbjct: 275 PR-PVEYLNIYNLTITERIDREE------------------FTYSETALKSLMIEHVKNQ 315

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-R 496
                    +     + I  LS +           S      L   +    ++       
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST 375

Query: 497 LQQLRILDLSQNSLQSIPEVTYIFVMLQK 525
           L++L+ L L +N L++  +V  +   +  
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSS 404

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.6 bits (235), Expect = 1e-20
 Identities = 70/476 (14%), Positives = 140/476 (29%), Gaps = 99/476 (20%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L LS+  +R +   V+                DL+ L ++HN ++ +      +  L  L
Sbjct: 81  LRLSHNRIRSLDFHVFLFN------------QDLEYLDVSHNRLQNISCC--PMASLRHL 126

Query: 74  NVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIP------------------------ 107
           ++S N    LP     G L  L  L +S     ++                         
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 108 ---DEIGSATALVKFDCSSNQLKELPSSLGRC-------LNLSDFKASNNCITSLPEDLA 157
                    T ++      N L  +  ++           N+     +   + +   +L 
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 158 DCSKMSKLDVEGNKLTVLSNNLI---ASWTMLTELIASKNLLNGMPE------TIGSLSR 208
               +  + ++  + T   +  +        +  L      +    +      +  +L  
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 266
           L+   +     L    ++ S    +    +  +    +        S    L+   N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 267 EYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT-- 322
           +   + C    RL  L L  N L            +  L      L +L S   +     
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382
              +  L   L  N            +T +    +  K                     +
Sbjct: 427 AESILVLN--LSSNM-----------LTGSVFRCLPPK---------------------V 452

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             LDL  N I  +P +++   +LQ L ++ N++K  PD +   L+SL  + L +NP
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.0 bits (231), Expect = 4e-20
 Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 8/187 (4%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDW 418
             +     NL+ +P ++        L LS+NSI EL   ++S  + L+ L LS N+I+  
Sbjct: 34  SMVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +      L  L + +N L+ +          L+ LDLS+N    LP    F +L  L
Sbjct: 92  DFHVFLFNQDLEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKL 148

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQ 537
             L L   + R+     +    L  + L   S   I       + +   ++   +   N 
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH-IKGGETESLQIPNTTVLHLVFHPNS 207

Query: 538 QFIPQLN 544
            F  Q+N
Sbjct: 208 LFSVQVN 214

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (311), Expect = 2e-31
 Identities = 57/331 (17%), Positives = 119/331 (35%), Gaps = 55/331 (16%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
           S+  + ++P++++     + LD++ N ++ L  +       L  L+   N ++ + E   
Sbjct: 41  SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L +L + +N ++ IP ++    SL E  + +N +  +P      L  +  +++  
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 263 NQLKEYCVEA---CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
           N L+    E      L+L+ L +S   L+G+P ++    TL +L L  N ++ +    + 
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLL 214

Query: 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA 379
                    L                                L L    +  I +     
Sbjct: 215 R-----YSKLY------------------------------RLGLGHNQIRMIENGSLSF 239

Query: 380 -GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD------AILTSLSSLSCL 432
              + +L L  N +  +P  L     LQ + L  N I                 +  + +
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 433 KLDNNPL--RQVPSDGFKDIPMLQILDLSYN 461
            L NNP+   +V    F+ +     +     
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  116 bits (293), Expect = 5e-29
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (285), Expect = 5e-28
 Identities = 59/315 (18%), Positives = 114/315 (36%), Gaps = 56/315 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      + ++P  IS         + NN +S L  +    L  L  L L +N++ +   
Sbjct: 38  VQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           +A     +L  L +S N L  +PP +   ++L +L +  N +R +   + +G     L+ 
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSG-----LRN 148

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEAGEITKLD 386
           +                                + + G  L  S      ++  ++  L 
Sbjct: 149 MN------------------------------CIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
           +S   +  +P +L    +L  L L  NKI+      L   S L  L L +N +R + +  
Sbjct: 179 ISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-------LRLQ 498
              +P L+ L L  N ++ +P       L  LQ +YL    + +   +        ++  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 499 QLRILDLSQNSLQSI 513
               + L  N +   
Sbjct: 295 YYNGISLFNNPVPYW 309

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 4e-24
 Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           L +L    + +   C   C   L V+  S+  L  +P EI        L L  N +  LR
Sbjct: 16  LDSLPPTYSAM---CPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELR 70

Query: 315 SSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
                G     L++L +  L  N+    S   E   +   +L    ++L +   +L  IP
Sbjct: 71  KDDFKG-----LQHLYALVLVNNK---ISKIHEKAFSPLRKL----QKLYISKNHLVEIP 118

Query: 374 SEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLS 430
             +  +  + +L +  N I+++P    S   ++  + +  N +++          L  L+
Sbjct: 119 PNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            L++    L  +P D  +    L  L L +N I ++           L  L L   Q+R 
Sbjct: 176 YLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRM 231

Query: 490 APTDILR-LQQLRILDLSQNSLQSIPEVTYIFVMLQK 525
                L  L  LR L L  N L  +P       +LQ 
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (251), Expect = 2e-23
 Identities = 70/382 (18%), Positives = 120/382 (31%), Gaps = 100/382 (26%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L  +P  I        LD+  N I ++                       
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELR---------------------- 70

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   +L      NN I+ + E   +   K+ KL +  N L  +  NL         
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------- 121

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPA 247
                             S L+ L +H NRI  +P  + SG  ++    MG N L     
Sbjct: 122 -----------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 248 ELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLL 304
           E G     KL  L +   +L     +  +  L+ L L +N +  +  E   + + L +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +R + +  ++      L  LR                              EL L
Sbjct: 224 LGHNQIRMIENGSLSF-----LPTLR------------------------------ELHL 248

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
           +   LS +P+ + +   +  + L  N+I ++              A    + L  N +  
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    A    ++    ++  N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 28/247 (11%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI-- 103
           LQKL ++ N++ ++  +L     L  L +  N++ ++P      L  +  +++  N +  
Sbjct: 104 LQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKM 162
                       L     S  +L  +P  L     L++    +N I ++   DL   SK+
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
            +L +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLS 278
                            N    +   + K +    + L +N +  + V+     C     
Sbjct: 280 G---------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 279 VLDLSNN 285
            +   N 
Sbjct: 324 AIQFGNY 330

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  127 bits (320), Expect = 2e-31
 Identities = 68/344 (19%), Positives = 110/344 (31%), Gaps = 37/344 (10%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEA-------------VDLQKLILAHN 55
             S S N    ++     + +  +D+  +     E                  +L L   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
           N+  L ++L   P +TVL ++ N L  LP        L+ LD   N +  +P+   S   
Sbjct: 70  NLSSLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPAS--- 121

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L   D  +NQL  LP        L    A NN +T LPE     + +  L V  N+LT L
Sbjct: 122 LKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELP---TSLEVLSVRNNQLTFL 175

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRL----IRLDLHQNRILSIPSSISGCCS 231
                     L  L  S NLL  +P             I     +NRI  IP +I     
Sbjct: 176 PELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231

Query: 232 LAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
                + +N LS+     L + +                 +   L   + D         
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 291 -PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ ++    +     N        L +  +       R ++
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (283), Expect = 9e-27
 Identities = 53/354 (14%), Positives = 98/354 (27%), Gaps = 41/354 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSIS 227
           N ++    +  ++W    +        N     +    +++   L L++  + S+P ++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL- 78

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 287
               +    +  NAL +LP     L  L   D   N+L         L+   LD+ NN L
Sbjct: 79  -PPQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPELPASLK--HLDVDNNQL 132

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           + LP        L  +    N L  L     +      L+ L   +  N+ +      E 
Sbjct: 133 TMLPELPAL---LEYINADNNQLTMLPELPTS------LEVLS--VRNNQLTFLPELPES 181

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWE----AGEITKLDLSRNSIQELPPELSSCA 403
           L           + L +    L ++P+                   N I  +P  + S  
Sbjct: 182 L-----------EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
              T+IL  N +       L+  ++                        L         A
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT----A 286

Query: 464 SLPENPPFSSLPHLQEL--YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
             PEN                           +      R     +  + +  E
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLE 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  106 bits (265), Expect = 2e-24
 Identities = 59/344 (17%), Positives = 103/344 (29%), Gaps = 65/344 (18%)

Query: 203 IGSLSRLIRLDLHQNRILSIPSSISGCCS----LAEFYMGNNALSALPAELGKLSKLGTL 258
           I +   L +   + N I    +            A      N   +L  E   +++   L
Sbjct: 7   INNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSEL 64

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+   L          +++VL+++ N+L  LP        L  L    N L TL     
Sbjct: 65  QLNRLNLSSLPDNLPP-QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL----- 115

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
               P L   L                              K L ++   L+ +P     
Sbjct: 116 ----PELPASL------------------------------KHLDVDNNQLTMLPELP-- 139

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +  ++   N +  LP   +S   L+ L +  N++   P+       SL  L +  N 
Sbjct: 140 -ALLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPE----LPESLEALDVSTNL 191

Query: 439 LRQVPSDGFKDI---PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           L  +P+   ++              N I  +PEN    SL     + L    L     + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLSSRIRES 249

Query: 495 LRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQ 538
           L  Q  +          S+ +     +        T    +N+Q
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQ 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 13/269 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ +   +N +  L E   +L    VL+V +N+L+ LP     L   ++LDVS N +  +
Sbjct: 142 LEYINADNNQLTMLPELPTSL---EVLSVRNNQLTFLPELPESL---EALDVSTNLLESL 195

Query: 107 PDEIGSATAL----VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
           P             + F C  N++  +P ++            +N ++S   +       
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
                       +S+    +         +          +  +      + H N   + 
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKL-GTLDLHSNQLKEYCVEACQLRLSVLD 281
              +S   S          ++A   +L   ++L       +    E C +   L  +  +
Sbjct: 316 LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWN--N 373

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L    L     E         LL  G  +
Sbjct: 374 LRKTLLVHQASEGLFDNDTGALLSLGREM 402

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  118 bits (298), Expect = 5e-30
 Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 17/252 (6%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N  S      +      T L    K L L    +  + S      ++  LD  
Sbjct: 57  LS--LSSNGLSFKGCCSQSDFGT-TSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 389 RNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSD 445
            ++++++       S  +L  L +S    +   + I   LSSL  LK+  N        D
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRIL 503
            F ++  L  LDLS   +  L     F+SL  LQ L +         T   + L  L++L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 504 DLSQNSLQSIPE 515
           D S N + +  +
Sbjct: 229 DYSLNHIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  114 bits (287), Expect = 2e-28
 Identities = 57/283 (20%), Positives = 100/283 (35%), Gaps = 45/283 (15%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +          ++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSV 121

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITK 384
              LR+                       L      L +   +     + I+     +  
Sbjct: 122 FLSLRN-----------------------L----IYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           L ++ NS QE       +   +L  L LS+ +++        SLSSL  L + +N    +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
            +  +K +  LQ+LD S N I +  +         L  L L +
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 1e-24
 Identities = 57/307 (18%), Positives = 92/307 (29%), Gaps = 64/307 (20%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           L  + N       P+    L  L  LDL Q ++  +  +  +   SL    M +N   +L
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                  L+ L  LD   N +                     L   P      ++L  L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMT--------------SKKQELQHFP------SSLAFLN 254

Query: 305 LTGNPLR 311
           LT N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  118 bits (298), Expect = 5e-29
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  I    +     +  N +  + A+    L  L  L L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 266 KEYCVEA-CQL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           ++  V A   L  L+ L+L +N L+ +P      ++ LR+L L  NP+ ++ S   N   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-- 169

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  L                                L L  +  L  I    +E   
Sbjct: 170 ---VPSLM------------------------------RLDLGELKKLEYISEGAFEGLF 196

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L   +I+++P  L+    L+ L +S N   +        LSSL  L + N+ + 
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F  +  L  L+L++N ++SLP +  F+ L +L EL+L 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  116 bits (293), Expect = 2e-28
 Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 25/250 (10%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS- 331
           C  + S +  +   LS +P  I   +  R L L  N ++ +++          L +L   
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRH-----LHHLEVL 104

Query: 332 RLPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
           +L  N   +        L ++          L L    L+ IPS       ++ +L L  
Sbjct: 105 QLGRNSIRQIEVGAFNGLASL--------NTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 390 NSIQELPPE-LSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
           N I+ +P    +   SL  L L    K++   +     L +L  L L    ++ +P+   
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--L 214

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDL 505
             +  L+ L++S N    +     F  L  L++L++   Q+     +    L  L  L+L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 506 SQNSLQSIPE 515
           + N+L S+P 
Sbjct: 274 AHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  108 bits (271), Expect = 2e-25
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 54/302 (17%), Positives = 98/302 (32%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETI 203
           +   ++ +P+ +   S    L++  N + ++  +       L  L   +N +        
Sbjct: 62  TRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL- 260
             L+ L  L+L  N +  IPS        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L+               +S  +  GL         L+ L L    ++ +       
Sbjct: 180 ELKKLEY--------------ISEGAFEGLF-------NLKYLNLGMCNIKDM------- 211

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEA 379
           P    L  L                               EL + G +   I        
Sbjct: 212 PNLTPLVGLE------------------------------ELEMSGNHFPEIRPGSFHGL 241

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL +  + +  +        ASL  L L+ N +   P  + T L  L  L L +NP
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 439 LR 440
             
Sbjct: 302 WN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (290), Expect = 1e-28
 Identities = 57/296 (19%), Positives = 114/296 (38%), Gaps = 56/296 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNN 285
           C L      +  L  +P +L        LDL +N++ E  ++         L  L L NN
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 286 SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +S + P     +  L +L L+ N L+ L           + K L+              
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELP--------EKMPKTLQ-------------- 124

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE--LPPE-LS 400
                           EL +    ++ +   ++    ++  ++L  N ++   +      
Sbjct: 125 ----------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 461 N-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           N I+++      ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I  
Sbjct: 226 NSISAVDNG-SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 2e-28
 Identities = 63/314 (20%), Positives = 116/314 (36%), Gaps = 57/314 (18%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      +  +P  +      A   + NN ++ +       L  L TL L +N++ +   
Sbjct: 36  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
            A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG     L  
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-----LNQ 146

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEA-GEITKL 385
           +                                + L    L  S I +  ++   +++ +
Sbjct: 147 MI------------------------------VVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            ++  +I  +P  L    SL  L L  NKI     A L  L++L+ L L  N +  V + 
Sbjct: 177 RIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-------APTDILRL 497
              + P L+ L L+ N +  +P     +   ++Q +YL    +          P    + 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 498 QQLRILDLSQNSLQ 511
                + L  N +Q
Sbjct: 293 ASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 2e-28
 Identities = 62/309 (20%), Positives = 127/309 (41%), Gaps = 34/309 (11%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETI 203
           S+  +  +P+DL      + LD++ NK+T + +    +   L  LI   N ++ + P   
Sbjct: 39  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L RL L +N++  +P  +    +L E  +  N ++ +       L+++  ++L +
Sbjct: 97  APLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 263 NQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           N LK   +E        +LS + +++ +++ +P   G   +L +L L GN +  + ++ +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASL 212

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
            G     L  L    L  N     S      +     L    +EL L    L  +P  + 
Sbjct: 213 KG-----LNNLAKLGLSFNS---ISAVDNGSLANTPHL----RELHLNNNKLVKVPGGLA 260

Query: 378 EAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKDW--PDAILTSLSS 428
           +   I  + L  N+I  +           +  AS   + L  N ++ W    +    +  
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320

Query: 429 LSCLKLDNN 437
            + ++L N 
Sbjct: 321 RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  106 bits (266), Expect = 2e-25
 Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 69/310 (22%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P++                   +P
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-------------------MP 120

Query: 131 SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
            +L   L +       N IT + +      ++M  +++  N L                 
Sbjct: 121 KTLQE-LRVH-----ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE----------- 163

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE- 248
                           + +L  + +    I +IP  +    SL E ++  N ++ + A  
Sbjct: 164 ----------NGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAAS 211

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           L  L+ L  L L  N +      +      L  L L+NN L  +P  +     ++ + L 
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271

Query: 307 GNPLRTLRSS 316
            N +  + S+
Sbjct: 272 NNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 2e-25
 Identities = 50/263 (19%), Positives = 91/263 (34%), Gaps = 26/263 (9%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           LK 
Sbjct: 25  CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKN-----LKN 77

Query: 329 LRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L +  L  N+ S+ S           +L    + L L    L  +P ++ +   + +L +
Sbjct: 78  LHTLILINNKISKIS---PGAFAPLVKL----ERLYLSKNQLKELPEKMPKT--LQELRV 128

Query: 388 SRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNNPLRQVPS 444
             N I ++     +    +  + L  N +K     +     +  LS +++ +  +  +P 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRI 502
                   L  L L  N I  +        L +L +L L    +       L     LR 
Sbjct: 189 GLPPS---LTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 503 LDLSQNSLQSIPEVTYIFVMLQK 525
           L L+ N L  +P        +Q 
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQV 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 56/282 (19%), Positives = 101/282 (35%), Gaps = 65/282 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L LS   L+++P ++ K                LQ+L +  N I K+++     L  + 
Sbjct: 104 RLYLSKNQLKELPEKMPKT---------------LQELRVHENEITKVRKSVFNGLNQMI 148

Query: 72  VLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
           V+ +  N L        A   +  L  + ++  +I  IP                     
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------------------- 189

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           LP SL   L+L       N IT +    L   + ++KL +  N ++ + N  +A+   L 
Sbjct: 190 LPPSL-TELHLD-----GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
           EL  + N L  +P  +     +  + LH N I +I S+                    P 
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND----------------FCPPG 287

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNN 285
              K +    + L SN ++ + ++     C    + + L N 
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (294), Expect = 2e-28
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  LR                               L L  +  LS I    +E   
Sbjct: 159 ---IPSLR------------------------------RLDLGELKRLSYISEGAFEGLS 185

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L+  +++E+P  L+    L  L LS N +          L  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F ++  L  ++L++N +  LP +  F+ L HL+ ++L 
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (288), Expect = 8e-28
 Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 23/249 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS- 331
           C  + S +     +L  +P  I   T  R L L  N ++ ++ +         L++L   
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-----LRHLEIL 93

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           +L  N      T +         L      L L    L+ IP+       ++ +L L  N
Sbjct: 94  QLSRNH---IRTIEIGAFNGLANL----NTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146

Query: 391 SIQELPPEL-SSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            I+ +P    +   SL+ L L    ++    +     LS+L  L L    LR++P+    
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LT 204

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLS 506
            +  L  LDLS N ++++     F  L HLQ+L++ + Q++    +    LQ L  ++L+
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263

Query: 507 QNSLQSIPE 515
            N+L  +P 
Sbjct: 264 HNNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (270), Expect = 2e-25
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.7 bits (246), Expect = 3e-22
 Identities = 61/302 (20%), Positives = 106/302 (35%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
               +  +P+ ++  +    L++  N++ ++  N       L  L  S+N +  +     
Sbjct: 51  VRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDL- 260
             L+ L  L+L  NR+ +IP+        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L                +S  +  GL         LR L L    LR +       
Sbjct: 169 ELKRLSY--------------ISEGAFEGLS-------NLRYLNLAMCNLREI------- 200

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEA 379
           P    L  L                               EL L G +LSAI        
Sbjct: 201 PNLTPLIKLD------------------------------ELDLSGNHLSAIRPGSFQGL 230

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL + ++ IQ +      +  SL  + L+ N +   P  + T L  L  + L +NP
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 439 LR 440
             
Sbjct: 291 WN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.4 bits (240), Expect = 2e-21
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNL-----HENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  112 bits (282), Expect = 2e-27
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIK 416
           S  LS     L  +P  +        LDLS N++  L  E   +   +L +L+LS N + 
Sbjct: 20  SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                    + +L  L L +N L  +    F D+  L++L L  N I  +  N  F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMA 136

Query: 476 HLQELYLRRMQLREAPTDIL----RLQQLRILDLSQNSLQSIPEVTY 518
            LQ+LYL + Q+   P +++    +L +L +LDLS N L+ +P    
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 97.6 bits (243), Expect = 2e-22
 Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
           L   +  L L   NLS + +E        +  L LS N +  +  E      +L+ L LS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN-- 468
            N +    + + + L +L  L L NN +  V  + F+D+  LQ L LS N I+  P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 469 PPFSSLPHLQELYLRRMQLREAPT---DILRLQQLRILDLSQNSLQ 511
              + LP L  L L   +L++ P      L       L L  N L+
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.3 bits (167), Expect = 1e-12
 Identities = 56/284 (19%), Positives = 94/284 (33%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +                 +L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------------FSDL 111

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                    L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 112 Q-------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 63/236 (26%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
             L+                              +L L    +S  P E+ +        
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKD------- 158

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLDNNPLR 440
                        +    L  L LS NK+K  P   L  L +     L L NNPL 
Sbjct: 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           + + LSC       L  VP           +LDLS+N ++ L      + L +L  L L 
Sbjct: 19  ASNILSC---SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
              L    ++    +  LR LDLS N L ++ E
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (281), Expect = 2e-27
 Identities = 68/331 (20%), Positives = 115/331 (34%), Gaps = 63/331 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
             SS  L  +PS L     +     SNN IT +   DL  C  +  L +  N +  +  +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI--SGCCSLAEF 235
             +S   L  L  S N L+ +  +    LS L  L+L  N   ++  +   S    L   
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 236 YMGNNA-LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +GN    + +  +    L+ L  L++ ++ L+ Y  ++ +    +S L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 292 PEI-GKMTTLRKLLLTGNPLRTLR-SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
                  +++  L L    L T   S L  G T +L+K                      
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF-------------------- 254

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                                              + ++  S+ ++   L+  + L  L 
Sbjct: 255 -------------------------------TFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            SRN++K  PD I   L+SL  + L  NP  
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  108 bits (272), Expect = 3e-26
 Identities = 60/323 (18%), Positives = 110/323 (34%), Gaps = 53/323 (16%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           S  R          + SIPS ++   ++    + NN ++ +    L +   L  L L SN
Sbjct: 29  SCDRNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 264 QLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNG 320
            +     ++      L  LDLS N LS L       +++L  L L GNP +TL  + +  
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA- 379
               L                                            + I  + +   
Sbjct: 147 HLTKLQILR---------------------------------VGNMDTFTKIQRKDFAGL 173

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + +L++  + +Q   P+ L S  ++  LIL   +     +  +   SS+ CL+L +  
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 439 LRQVP--------SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L            ++        + + ++   +  +      + +  L EL   R QL+ 
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM--KLLNQISGLLELEFSRNQLKS 291

Query: 490 APTDIL-RLQQLRILDLSQNSLQ 511
            P  I  RL  L+ + L  N   
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  105 bits (264), Expect = 4e-25
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 50/347 (14%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
              ++ LI        + E      S +  L+L    + +                  + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF---------------SE 241

Query: 242 LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEI-GKMT 298
           LS      L K      + +    L +      Q+  L  L+ S N L  +P  I  ++T
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +L+K+ L  NP            +   + YL   L +N   E  + K
Sbjct: 302 SLQKIWLHTNPWDC---------SCPRIDYLSRWLNKNSQKEQGSAK 339

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 52/334 (15%), Positives = 116/334 (34%), Gaps = 57/334 (17%)

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           MP T+  +  L  +        S  +S+S C         + +L+++P+ L     + +L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLS-CDRNGICKGSSGSLNSIPSGL--TEAVKSL 57

Query: 259 DLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           DL +N++    +    L+    L  L L++N ++ +  +    + +L  L L+ N L  L
Sbjct: 58  DLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            SS         L  L                                L+L G     + 
Sbjct: 116 SSSWFKP-----LSSLT------------------------------FLNLLGNPYKTLG 140

Query: 374 SEIWEAG--EITKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                +   ++  L +    +  ++  +  +    L+ L +  + ++ +    L S+ ++
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN------IASLPENP--PFSSLPHLQELY 481
           S L L       +          ++ L+L          + L              + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           +    L +    + ++  L  L+ S+N L+S+P+
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  107 bits (269), Expect = 3e-26
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 43/241 (17%)

Query: 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339
                  L  +P  I      +++ L GN +  + ++          + L          
Sbjct: 16  TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRA-----CRNLT--------- 59

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS-IQELPP 397
                                 L L    L+ I +  +     + +LDLS N+ ++ + P
Sbjct: 60  ---------------------ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 398 E-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                   L TL L R  +++    +   L++L  L L +N L+ +P D F+D+  L  L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIP 514
            L  N I+S+PE   F  L  L  L L + ++        R L +L  L L  N+L ++P
Sbjct: 159 FLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 515 E 515
            
Sbjct: 218 T 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  106 bits (267), Expect = 5e-26
 Identities = 59/241 (24%), Positives = 86/241 (35%), Gaps = 42/241 (17%)

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
              + L  N +S +P         L  L L  N L  + ++   G     L  L      
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-----LALLE----- 83

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEG-MNLSAIPSEIWEA-GEITKLDLSRNSIQ 393
                                    +L L     L ++    +   G +  L L R  +Q
Sbjct: 84  -------------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 394 ELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
           EL P      A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
           L  L L  N +A +  +  F  L  L  LYL    L   PT+ L  L+ L+ L L+ N  
Sbjct: 179 LDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 511 Q 511
            
Sbjct: 238 V 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  106 bits (267), Expect = 6e-26
 Identities = 48/162 (29%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                S     L A+P  I       ++ L  N I  +P     +C +L  L L  N + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 417 DWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
               A  T L+ L  L L +N  LR V    F  +  L  L L    +  L     F  L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGL 128

Query: 475 PHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
             LQ LYL+   L+  P D  R L  L  L L  N + S+PE
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (254), Expect = 3e-24
 Identities = 60/278 (21%), Positives = 95/278 (34%), Gaps = 64/278 (23%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
               Q  + ++P  I    +    ++  N +S +PA        L  L LHSN L     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--- 70

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYL 329
                      +   + +GL         L +L L+ N  LR++  +  +G     L  L
Sbjct: 71  -----------IDAAAFTGLA-------LLEQLDLSDNAQLRSVDPATFHG-----LGRL 107

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L L+   L  +   ++     +  L L 
Sbjct: 108 H------------------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N++Q LP +      +L  L L  N+I   P+     L SL  L L  N +  V    F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
           +D+  L  L L  N +++LP     + L  LQ L L  
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 4e-23
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 4e-21
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 8e-21
 Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 65  RNLPL-LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
             +P     + +  N++S +PA +      L  L +  N + +I            F   
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FT-- 77

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIA 181
              L  L       L+LSD    N  + S+         ++  L ++   L  L      
Sbjct: 78  --GLALL-----EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----- 121

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
                             P     L+ L  L L  N + ++P        +L   ++  N
Sbjct: 122 ------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GK 296
            +S++P      L  L  L LH N++      A     RL  L L  N+LS LP E    
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 297 MTTLRKLLLTGNPLR 311
           +  L+ L L  NP  
Sbjct: 224 LRALQYLRLNDNPWV 238

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (268), Expect = 7e-26
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (251), Expect = 1e-23
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 56/316 (17%), Positives = 111/316 (35%), Gaps = 47/316 (14%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  I++   ++ +     + +    +         ++ +   +  L+ L  L+L  NQ
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           + +        +++ L+LS N L  +   I  + +++ L LT   +  + + L       
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAG----- 127

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            L  L                              + L L+   ++ I S +     +  
Sbjct: 128 -LSNL------------------------------QVLYLDLNQITNI-SPLAGLTNLQY 155

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L +    + +L P L++ + L TL    NKI D     L SL +L  + L NN +  V  
Sbjct: 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
               +   L I+ L+    +       ++L     +         AP  I         +
Sbjct: 212 -PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP-IAPATISDNGTYASPN 269

Query: 505 LSQNSLQSIPEVTYIF 520
           L+ N    I  V+Y F
Sbjct: 270 LTWNLTSFINNVSYTF 285

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 1e-16
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 48/325 (14%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       +   K+    + +T       A    +T L A    +  + E +
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGV 59

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L+ LI L+L  N+I  + + +     + E  +  N L  + A +  L  + TLDL S 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           Q+ +    A    L VL L  N ++ + P +  +T L+ L +    +  L + L N    
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLAN---- 171

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                                L  +   +S I S +     + 
Sbjct: 172 --LSKL------------------------------TTLKADDNKISDI-SPLASLPNLI 198

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ L  N I ++ P L++ ++L  + L+   I + P     +L       +       + 
Sbjct: 199 EVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255

Query: 444 SDGFKDIPMLQILDLSYNIASLPEN 468
                D       +L++N+ S   N
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ L L  N I  +   L  L  L  L++ + ++S+L   +  L  L +L    N I  I
Sbjct: 131 LQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S   L++    +NQ+ ++ S L    NL     +N  IT+ P    + + +    
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP-VFYNNNLVVPNV 245

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           V+G     ++   I+          + NL + +  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 7e-25
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 82.5 bits (203), Expect = 1e-16
 Identities = 51/285 (17%), Positives = 96/285 (33%), Gaps = 50/285 (17%)

Query: 232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
           + E    +  +  +       ++    +L    + +   +     +  +  +N+ +  + 
Sbjct: 1   MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ 59

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             I  +  + KL L GN L  +   L N      LK L                      
Sbjct: 60  G-IQYLPNVTKLFLNGNKLTDI-KPLTN------LKNL---------------------- 89

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
                     L L+   +  + S + +  ++  L L  N I ++   L     L++L L 
Sbjct: 90  --------GWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLG 139

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
            NKI D     L+ L+ L  L L++N +  +       +  LQ L LS N I+ L     
Sbjct: 140 NNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDL---RA 192

Query: 471 FSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSIP 514
            + L +L  L L   +   +       L     +  +  SL +  
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 237

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  102 bits (255), Expect = 3e-24
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 59/307 (19%), Positives = 103/307 (33%), Gaps = 47/307 (15%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  I  S        +  +   +++       +L+ +  +  +++ +K       
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQY 66

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ L L+ N L+ + P +  +  L  L L  N ++ L SSL +      LK L    
Sbjct: 67  LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKD------LKKL---- 114

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                     K LSLE   +S I   +    ++  L L  N I 
Sbjct: 115 --------------------------KSLSLEHNGISDING-LVHLPQLESLYLGNNKIT 147

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           ++   LS    L TL L  N+I D     L  L+ L  L L  N +  +       +  L
Sbjct: 148 DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513
            +L+L             S+L     +      L   P  I         ++  +  +  
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL-VTPEIISDDGDYEKPNVKWHLPEFT 261

Query: 514 PEVTYIF 520
            EV++IF
Sbjct: 262 NEVSFIF 268

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 50/286 (17%), Positives = 110/286 (38%), Gaps = 27/286 (9%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
           L  N +  +     L        L+ L   L  N+ ++ +      ++  T+L      L
Sbjct: 119 LEHNGISDINGLVHLPQ------LESLY--LGNNKITDITV-----LSRLTKL----DTL 161

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 422
           SLE   +S I   +    ++  L LS+N I +L   L+   +L  L L   +  + P   
Sbjct: 162 SLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINH 219

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468
            ++L   + +K  +  L  V  +   D    +  ++ +++      
Sbjct: 220 QSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  101 bits (254), Expect = 3e-24
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++    + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +  +L  L  L L +N L+ +P    + +P L +LD+S+N + SLP       L  L
Sbjct: 71  Q--VDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGA-LRGLGEL 126

Query: 478 QELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
           QELYL+  +L+  P  +L    +L  L L+ N+L  +P 
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 98.6 bits (246), Expect = 4e-23
 Identities = 51/241 (21%), Positives = 82/241 (34%), Gaps = 40/241 (16%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +          
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMP-----YTR 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                               +L+L+   L+ +  +      +  LDLS
Sbjct: 57  LT------------------------------QLNLDRAELTKLQVD-GTLPVLGTLDLS 85

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +Q LP    +  +L  L +S N++   P   L  L  L  L L  N L+ +P     
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ 507
             P L+ L L+ N +  LP     + L +L  L L+   L   P        L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Query: 508 N 508
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 87.1 bits (216), Expect = 3e-19
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G    L     
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-EL----- 126

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
                                        +EL L+G  L  +P  +     ++ KL L+ 
Sbjct: 127 -----------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           N++ ELP  L +   +L TL+L  N +   P     S   L    L  NP
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 44/241 (18%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDL 282
            +S   S  E       L+ALP +L        L L  N L            RL+ L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
               L+ L  + G +  L  L L+ N L++L         P L + L             
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSL---------PLLGQTL------------- 99

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-S 400
                       L      L +    L+++P       GE+ +L L  N ++ LPP L +
Sbjct: 100 ----------PAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L+ L L+ N + + P  +L  L +L  L L  N L  +P   F    +L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

Query: 461 N 461
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 8e-15
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 400 SSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
            S  AS   +   +  +   P  +    + L    L  N L             L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
                 L +     +LP L  L L   QL+  P     L  L +LD+S N L S+P 
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELY 481
           + S   ++C   D   L  +P D  KD     IL LS N + +            L +L 
Sbjct: 9   VASHLEVNC---DKRNLTALPPDLPKD---TTILHLSENLLYTFSLAT-LMPYTRLTQLN 61

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
           L R +L +   D   L  L  LDLS N LQS+P +
Sbjct: 62  LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLL 95

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 99.3 bits (248), Expect = 2e-23
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
             L  ++K L L    L  + S  + +  E+  LDLSR  IQ +      S + L TLIL
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + N I+       + LSSL  L      L  + +     +  L+ L++++N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRI----LDLSQNSLQSIPE 515
            FS+L +L+ L L   +++      L  L Q+ +    LDLS N +  I  
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 49/240 (20%), Positives = 76/240 (31%), Gaps = 44/240 (18%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE- 267
            LDL  N +  + S        L    +    +  +       LS L TL L  N ++  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 268 -YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
                +    L  L     +L+ L     G + TL++L +  N +++          P  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEY 144

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----G 380
              L                       T L    + L L    + +I             
Sbjct: 145 FSNL-----------------------TNL----EHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
               LDLS N +  + P       L+ L L  N++K  PD I   L+SL  + L  NP  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.0 bits (224), Expect = 3e-20
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 47/240 (19%), Positives = 85/240 (35%), Gaps = 47/240 (19%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDLS N L  L          L+ L L+   ++T+            L +L        
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-----LSHL-------- 78

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                                   L L G  + ++    +     + KL     ++  L 
Sbjct: 79  ----------------------STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
                   +L+ L ++ N I+ +      ++L++L  L L +N ++ +     + +  + 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 455 I----LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQN 508
           +    LDLS N +  +     F  +  L+EL L   QL+  P  I  RL  L+ + L  N
Sbjct: 177 LLNLSLDLSLNPMNFIQPGA-FKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 53/260 (20%), Positives = 85/260 (32%), Gaps = 53/260 (20%)

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            +     IP ++    S     +  N L  L +       +L  LDL   +++     A 
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 274 Q--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           Q    LS L L+ N +  L       +++L+KL+     L +L +  +            
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------- 124

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA----GEITKLD 386
                                      T KEL++    + +      E       +  LD
Sbjct: 125 ---------------------------TLKELNVAHNLIQSFKLP--EYFSNLTNLEHLD 155

Query: 387 LSRNSIQELPPE-LSSCASLQ----TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           LS N IQ +    L     +     +L LS N +          +  L  L LD N L+ 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS 214

Query: 442 VPSDGFKDIPMLQILDLSYN 461
           VP   F  +  LQ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 97.7 bits (244), Expect = 5e-23
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +     +      L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P  I   L +L  L + +N L+ +P   F  +  L  L L  N + SLP    F S
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-VFDS 131

Query: 474 LPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
           L  L  L L   +L+  P  +  +L  L+ L L  N L+ +PE
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 97.7 bits (244), Expect = 5e-23
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 5/167 (2%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
           + +   +K+L L+   LS++PS+ +    ++  L L+ N +Q LP  +     +L+TL +
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + NK++  P  +   L +L+ L+LD N L+ +P   F  +  L  L L YN + SLP+  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG- 151

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
            F  L  L+EL L   QL+  P     +L +L+ L L  N L+ +PE
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + L L    L  +P+ I++    +  L ++ N +Q LP  +     +L  L L RN++K 
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPH 476
            P  +  SL+ L+ L L  N L+ +P   F  +  L+ L L  N +  +PE   F  L  
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA-FDKLTE 182

Query: 477 LQELYLRRMQLREAPTDIL-RLQQLRILDLSQN 508
           L+ L L   QL+  P      L++L++L L +N
Sbjct: 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T  L   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KL--- 135

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
                                            LSL    L ++P  +++    + +L L
Sbjct: 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 388 SRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             N ++ +P         L+TL L  N++K  P+    SL  L  L+L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 40/209 (19%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL SN+L     +A     +L +L L++N L  LP  I  ++  L  L +T N L+ L 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +                                         EL L+   L ++P 
Sbjct: 102 IGVFDQLV-----------------------------------NLAELRLDRNQLKSLPP 126

Query: 375 EIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            ++++  ++T L L  N +Q LP  +     SL+ L L  N++K  P+     L+ L  L
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KLDNN L++VP   F  +  L++L L  N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 89.0 bits (221), Expect = 4e-20
 Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L ++PS I    +  KLDL    +  L          L  L L  N+++     +   L+
Sbjct: 26  LDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            L  L L NN L  +P   F  +  L  L L  N + SLP    F  L  L+EL L   Q
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ 142

Query: 487 LREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
           L+  P     +L  L+ L LS N LQS+P 
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 361 ELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
            L+L+   L  + + +++   E+  L L+ N +  LP  +      L  L L  N++K  
Sbjct: 63  WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           P  +   L+ L  L+L+ N L+ +P+  F  +  LQ L LS N + S+P    F  L  L
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKL 181

Query: 478 QELYL 482
           Q + L
Sbjct: 182 QTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 38/185 (20%)

Query: 280 LDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           LDL +  L+ L       +T L  L L  N L+TL + + +  T                
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---------------- 83

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L L    L+++P  +++   ++ KL L  N ++ LP 
Sbjct: 84  -------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 398 EL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
            +      L+ L L+ N+++  P      L++L  L L  N L+ VP   F  +  LQ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 457 DLSYN 461
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL S  L        +   +L+ L+L  N L  L   +   +T L  L L  N L +L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +  T   L  L   L  N+                               L ++PS
Sbjct: 100 LGVFDHLTQ--LDKLY--LGGNQ-------------------------------LKSLPS 124

Query: 375 EIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++   ++ +L L+ N +Q +P        +LQTL LS N+++  P      L  L  +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 433 KLDNNP 438
            L  N 
Sbjct: 185 TLFGNQ 190

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 85.9 bits (213), Expect = 3e-19
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 6/143 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L+ IP+ + E   IT++ L +N+I+ +PP   S    L+ + LS N+I +        L 
Sbjct: 23  LTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
           SL+ L L  N + ++P   F+ +  LQ+L L+ N I  L  +  F  L +L  L L   +
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNK 139

Query: 487 LREAPTDIL-RLQQLRILDLSQN 508
           L+         L+ ++ + L+QN
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             +D     + E+P  L    ++  + L +N IK  P    +    L  + L NN + ++
Sbjct: 14  NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQL 500
             D F+ +  L  L L  N I  LP++  F  L  LQ L L   ++     D    L  L
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130

Query: 501 RILDLSQNSLQSIPE 515
            +L L  N LQ+I +
Sbjct: 131 NLLSLYDNKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSR 412
           L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      SL +L+L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           NKI + P ++   L SL  L L+ N +  +  D F+D+  L +L L  N + ++ +   F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TF 148

Query: 472 SSLPHLQELYL 482
           S L  +Q ++L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + + L    +S +  +       +  L L  N I ELP  L     SLQ L+L+ NKI  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
                   L +L+ L L +N L+ +    F  +  +Q + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            + L  N++  +PP        LR++ L+ N +  L      G     L+ L        
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSL-------- 82

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELP 396
                                   L L G  ++ +P  ++E    +  L L+ N I  L 
Sbjct: 83  ----------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            +      +L  L L  NK++       + L ++  + L  NP 
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 87.2 bits (216), Expect = 8e-19
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 55/292 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN 285
           CS   F    + ++ +P++L        L     +L+   ++         L  +++S N
Sbjct: 9   CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQN 64

Query: 286 -SLSGLPPEI-GKMTTLRKL-LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
             L  +  ++   +  L ++ +   N L  +         P L                 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-LPNL----------------- 106

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRN-SIQELPPELS 400
                            + L +    +  +P        +   LD+  N +I  +     
Sbjct: 107 -----------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 401 S--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                    L L++N I++  ++             DNN L ++P+D F       ILD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509
           S   I SLP      +L  L+        L++ PT + +L  L    L+  S
Sbjct: 210 SRTRIHSLPSY-GLENLKKLRARSTY--NLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 32/176 (18%), Positives = 68/176 (38%), Gaps = 9/176 (5%)

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCAS 404
           +  + + L   + EL      L  I    +   G++ K+++S+N + E+      S+   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
           L  + + + N +         +L +L  L + N  ++ +P           +LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 462 IASLPENPPFSSLPH-LQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
           I ++  N  F  L      L+L +  ++E         Q   +     N+L+ +P 
Sbjct: 141 IHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.1 bits (195), Expect = 3e-16
 Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 22/249 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G     L+ +   
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKI--E 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEI-WEAGEITKLDLSRN 390
           + +N+       + D+ +   +L     E+ +E  N L  I  E       +  L +S  
Sbjct: 61  ISQNDVL--EVIEADVFSNLPKL----HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 391 SIQELPPEL-SSCASLQTLILSRN-KIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDGF 447
            I+ LP            L +  N  I          LS     L L+ N ++++ +  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDL 505
               + ++     N +  LP +  F        L + R ++   P+  L  L++LR    
Sbjct: 175 NGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 506 SQNSLQSIP 514
              +L+ +P
Sbjct: 234 --YNLKKLP 240

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 3e-12
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTLR 314
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL- 193

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                                           D+   A+        L +    + ++PS
Sbjct: 194 ------------------------------PNDVFHGASGP----VILDISRTRIHSLPS 219

Query: 375 EIWEAGEITKLD-LSRNSIQELPPELSSCASLQTLILSRN 413
              E   + KL   S  ++++LP  L    +L    L+  
Sbjct: 220 YGLE--NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM 104
              L L  N I+++         L  +    +N L ELP            LD+S   I 
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 105 KIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +P     +   L     S+  LK+LP +L + + L +   +   
Sbjct: 216 SLPSYGLENLKKLRAR--STYNLKKLP-TLEKLVALMEASLTYPS 257

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           +     ++ ++   I     +  L L  N + ++   L    +L  LIL+ N+++  P+ 
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNG 103

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
           +   L++L  L L  N L+ +P   F  +  L  L+L++N + SLP+   F  L +L EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL 162

Query: 481 YLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPE 515
            L   QL+  P  +  +L QL+ L L QN L+S+P+
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 49/251 (19%), Positives = 95/251 (37%), Gaps = 41/251 (16%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
            +        P          +  +   +++    +   L+ +  +  +++ +K      
Sbjct: 4   TVSTPIKQIFPDDAF--AETIKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQGIQ 60

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
               +  L L  N L  +   + ++T L  L+LTGN L++L + + +  T          
Sbjct: 61  YLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLT---------- 109

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                      KEL L    L ++P  +++    +T L+L+ N 
Sbjct: 110 -------------------------NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 392 IQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           +Q LP  +     +L  L LS N+++  P+ +   L+ L  L+L  N L+ VP   F  +
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204

Query: 451 PMLQILDLSYN 461
             LQ + L  N
Sbjct: 205 TSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
             S+   +  P          NL         +T         + + ++    + +  + 
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLK-----KKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 57

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSL 232
              I     +  L    N L      I     L+ L  L L  N++ S+P+ +     +L
Sbjct: 58  G--IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 233 AEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDLSNNSLSG 289
            E  +  N L +LP  +  KL+ L  L+L  NQL+     V      L+ LDLS N L  
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 290 LPPEI-GKMTTLRKLLLTGNPLR 311
           LP  +  K+T L+ L L  N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K  L   ++         L  +  +  +++ +  +   I  L  ++ L +  N +  
Sbjct: 20  ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD 77

Query: 106 IP--DEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
           I    E+ + T L     + NQL+ LP+ +   L NL +     N + SLP+ + D  + 
Sbjct: 78  ISALKELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 220
           ++ L++  N+L  L   +    T LTEL  S N L  +PE +   L++L  L L+QN++ 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 221 SIP 223
           S+P
Sbjct: 195 SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 10/97 (10%)

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478
           PD         +        +    +    ++  +  +  + +   +        LP+++
Sbjct: 14  PDDAFAETIKANL---KKKSVTDAVT--QNELNSIDQIIANNS--DIKSVQGIQYLPNVR 66

Query: 479 ELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP 514
            L L   +L +        L  L  L L+ N LQS+P
Sbjct: 67  YLALGGNKLHDISALK--ELTNLTYLILTGNQLQSLP 101

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 79.7 bits (197), Expect = 3e-17
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 27/149 (18%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L+ IP  I +     +L L+ N    L                          I   L  
Sbjct: 23  LNKIPEHIPQ--YTAELRLNNNEFTVLEA----------------------TGIFKKLPQ 58

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
           L  +   NN +  +    F+    +  + L+ N + ++     F  L  L+ L LR  ++
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRI 117

Query: 488 REAPTDIL-RLQQLRILDLSQNSLQSIPE 515
                D    L  +R+L L  N + ++  
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLI 409
             +   + EL L     + + +        ++ K++ S N I ++        + +  ++
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           L+ N++++    +   L SL  L L +N +  V +D F  +  +++L L  N I ++   
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 469 PPFSSLPHLQELYL 482
             F +L  L  L L
Sbjct: 148 -AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           ++++     ++ I    +E A  + ++ L+ N ++ +  ++     SL+TL+L  N+I  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +     LSS+  L L +N +  V    F  +  L  L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 279 VLDLSNNSLSGLPPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L L+NN  + L       K+  LRK+  + N +  +      G                
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------- 79

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
                          A+ +     E+ L    L  +  ++++    +  L L  N I  +
Sbjct: 80  ---------------ASGV----NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 396 PPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
             +     +S++ L L  N+I         +L SLS L L  NP 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           + L           A   +L   +LS    + L  E+     L++L              
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL----- 386

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-ATRLSVTSKELSLEGMNLSAIPSEI 376
                  ++  +R+  P   + E       L  +   R +      S   +         
Sbjct: 387 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---NSVLK 437

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            E  ++  L L+   +  L   L     +  L LS N+++  P A L +L  L  L+  +
Sbjct: 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           N L  V   G  ++P LQ L L  N +       P  S P L  L L+   L +      
Sbjct: 496 NALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

Query: 496 RLQQL 500
           RL ++
Sbjct: 554 RLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 77.9 bits (191), Expect = 3e-15
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 21/255 (8%)

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           S  E  +  +       +     +L   +L   +                  S   L  L
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVL---------QSELESCKELQEL 377

Query: 291 PPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
            PE    + T+  L+   +PL   + +L    T   +  +R+   ++  S+       L 
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                     + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L 
Sbjct: 438 MEYAD----VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPE 467
            S N +++     + +L  L  L L NN L+Q  +       P L +L+L  N +     
Sbjct: 493 ASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

Query: 468 NPPF--SSLPHLQEL 480
                   LP +  +
Sbjct: 551 IQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 6e-14
 Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 51/268 (19%)

Query: 25  PNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP 84
              +     +      W  +   ++ +L  +  E    D      L    +S  K + L 
Sbjct: 306 AASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ 365

Query: 85  AAIGELHMLKSLDVSF--------------NSIMKIPDEIGSATALVKFD---------C 121
           + +     L+ L+                 + ++   + +   + L   D          
Sbjct: 366 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
            S  L E         ++     ++  +T L                           + 
Sbjct: 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-------------------------LE 460

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
              ++T L  S N L  +P  + +L  L  L    N + ++   ++    L E  + NN 
Sbjct: 461 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519

Query: 242 LSALPA--ELGKLSKLGTLDLHSNQLKE 267
           L    A   L    +L  L+L  N L +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 1e-13
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 23/180 (12%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ----------- 406
           + KE  L          +     ++ + +LS      L  EL SC  LQ           
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 407 TLILSRNKIKD--WPDAILTSLSSLSCL--------KLDNNPLRQVPSDGFKDIPMLQIL 456
           T+IL    +    +    L   S+L  +            +      S    +   +++L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
            L++   ++  +     L  +  L L   +LR  P  +  L+ L +L  S N+L+++  V
Sbjct: 447 HLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 504

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 44/272 (16%), Positives = 83/272 (30%), Gaps = 46/272 (16%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L+     +L    + +   +     +   +  N+++  L   +   T L++L L+ N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHN 73

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  L S L +      L  L                              +ELS+    
Sbjct: 74  QISDL-SPLKD------LTKL------------------------------EELSVNRNR 96

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +      +  +++L L  N +++    L    +L+ L +  NK+K      L  LS 
Sbjct: 97  LKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488
           L  L L  N +      G   +  +  +DL+              L     +     +  
Sbjct: 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 489 EAPTDILRLQQLRILDLSQNSLQSIPEVTYIF 520
             P  I          +         EV+Y F
Sbjct: 210 S-PYYISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
                I ++ P     A+     L +  + D        LS +     DN+ ++ +   G
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AG 58

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505
            +    L+ L LS+N I+ L    P   L  L+EL + R +L+    + +    L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDL---SPLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFL 113

Query: 506 SQNSLQSIP 514
             N L+   
Sbjct: 114 DNNELRDTD 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.9 bits (196), Expect = 8e-16
 Identities = 91/604 (15%), Positives = 169/604 (27%), Gaps = 178/604 (29%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG-- 366
              T    + +     L     + +  +  S   T  E    +   L    ++L  E   
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 367 ---MNLSAIPSEI---------WEAGEITKLD-LSRNSIQELPPEL-----SSCA----- 403
                LS I   I         W+     KL  +  +S+  L P          +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 404 ---SLQTL-ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ----- 454
                  L ++  + IK     ++  L   S ++                IP +      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------ISIPSIYLELKV 437

Query: 455 -----------ILDLSYNIASLPENPPFSSLP-----------HLQ--ELYLRRMQLREA 490
                      I+D  YNI    ++                  HL+  E   R    R  
Sbjct: 438 KLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 491 PTDILR-LQQ-LRILDLSQNSLQSIPEV--------TYIFVMLQKKSINTELVDKNQQFI 540
             D  R L+Q +R    + N+  SI            YI            LV+    F+
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNAILDFL 552

Query: 541 PQLN 544
           P++ 
Sbjct: 553 PKIE 556

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 75.9 bits (187), Expect = 9e-16
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            + Q L L  N+I      +  SL +L  L L +N L  +P   F  +  L +LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           +  LP    F  L HL+EL++   +L E P  I RL  L  L L QN L+SIP 
Sbjct: 100 LTVLPSAV-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
             ++ L L    ++ +   ++++   + +L L  N +  LP  +  S   L  L L  N+
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474
           +   P A+   L  L  L +  N L ++P  G + +  L  L L  N      +  F  L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 475 PHLQELYL 482
             L   YL
Sbjct: 159 SSLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS----SLVNGPTPALLKYLRSRL 333
           +L L +N ++ L P +   +  L++L L  N L  L      SL                
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------------- 89

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSI 392
                                       L L    L+ +PS +++    + +L +  N +
Sbjct: 90  -------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            ELP  +     L  L L +N++K  P      LSSL+   L  NP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 362 LSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L    L A+P  ++    ++T LDL  N +  LP  +      L+ L +  NK+ + P
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             I   L+ L+ L LD N L+ +P   F  +  L    L  N
Sbjct: 129 RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 10/170 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRN-SIQELPPEL-SSCASLQTLILS 411
           L  +++ L L   +L  IPS  +     I+++ +S + ++Q+L      + + +  + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 412 RNK-IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN--IASLPE 467
             + +       L  L  L  L + N  L+  P         +  IL+++ N  + S+P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 468 NPPFSSLP-HLQELYLRRMQLREAPTDILRLQQLRILDLSQN-SLQSIPE 515
           N  F  L      L L                +L  + L++N  L  I +
Sbjct: 149 NA-FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 9/138 (6%)

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
                 C   +   ++   I+  P  +  S  +L    L    LR +PS  F ++P +  
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQRIPS-LPPSTQTLK---LIETHLRTIPSHAFSNLPNISR 59

Query: 456 LDLSYN--IASLPENPPFSSLPHLQELYLRR-MQLREAPTDILR-LQQLRILDLSQNSLQ 511
           + +S +  +  L  +  F +L  +  + +R    L     D L+ L  L+ L +    L+
Sbjct: 60  IYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

Query: 512 SIPEVTYIFVMLQKKSIN 529
             P++T ++       + 
Sbjct: 119 MFPDLTKVYSTDIFFILE 136

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 118 KFDCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN-KLT 173
            F  +   ++ +PS     + L L         + ++P    ++   +S++ V  +  L 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 174 VLSNNLIASWTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGC 229
            L ++   + + +T +       L    P+ +  L  L  L +    +   P  + +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 230 CSLAEFYM-GNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS 283
                  +  N  ++++P     G  ++  TL L++N      V+       +L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 284 -NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTL 313
            N  L+ +  +   G  +    L ++   +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 38/253 (15%), Positives = 85/253 (33%), Gaps = 55/253 (21%)

Query: 67  LPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN 124
            P    L +    L  +P+ A   L  +  + VS + ++ ++            F     
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY---- 77

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
            L ++       + + +       +T +  D L +   +  L +    L +  +      
Sbjct: 78  NLSKV-----THIEIRN----TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--- 125

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNN 240
                              + S      L++  N  + SIP  +  G C+      + NN
Sbjct: 126 -------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 241 ALSALPAELGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296
             +++       +KL  + L+ N+    + +          S+LD+S  S++ LP +   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 297 MTTLRKLLLTGNP 309
           +  L++L+     
Sbjct: 225 LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLD 213
              C++   L +  N  T +         +    +     L  + +    G  S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 214 LHQNRILSIPSSI 226
           + Q  + ++PS  
Sbjct: 212 VSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 50/260 (19%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN-QLKEY 268
              +    I  IPS      S     +    L  +P+     L  +  + +  +  L++ 
Sbjct: 15  DFRVTCKDIQRIPSLPP---STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ- 70

Query: 269 CVEA---CQL-RLSVLDLSNN-SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
            +E+     L +++ +++ N  +L+ + P+   ++  L+ L +    L+     L    +
Sbjct: 71  -LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYS 128

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AG 380
             +   L                                   +   +++IP   ++    
Sbjct: 129 TDIFFIL--------------------------------EITDNPYMTSIPVNAFQGLCN 156

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSL-SSLSCLKLDNNP 438
           E   L L  N    +     +   L  + L++NK +          + S  S L +    
Sbjct: 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 439 LRQVPSDGFKDIPMLQILDL 458
           +  +PS G + +  L   + 
Sbjct: 217 VTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 47  LQKLILAHNN-IEKLKED-LRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNS 102
           +  + + +   +  +  D L+ LPLL  L + +  L   P    +    +   L+++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 103 -IMKIPDEI--GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLAD 158
            +  IP     G     +     +N    +         L       N  +T + +D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 159 --CSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              S  S LDV    +T L +  +     L   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 6e-15
 Identities = 37/198 (18%), Positives = 78/198 (39%), Gaps = 18/198 (9%)

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
           VN P      YL   L ++  +    T+  + ++          ++L  +N++ + + I 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANI--TEAQMNSL--------TYITLANINVTDL-TGIE 63

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            A  I  L ++        P +S  ++L+ L +    +       L+ L+SL+ L + ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 438 PLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
                       +P +  +DLSYN  I  +    P  +LP L+ L ++   + +    I 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI---MPLKTLPELKSLNIQFDGVHDY-RGIE 178

Query: 496 RLQQLRILDLSQNSLQSI 513
              +L  L     ++   
Sbjct: 179 DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            +    +L ++   +  +A + SL+ ++   L N  +  +   G +    ++ L ++   
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYIT---LANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSIP 514
             +     P S L +L+ L +    +  +   ++  L  L +LD+S ++     
Sbjct: 78  ATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 342 STTKEDLI------TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           +TT +D I                 EL      +  + + +        L LS N+I+++
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              LS   +L+ L L RN IK   + +     +L  L +  N +  +   G + +  L++
Sbjct: 64  SS-LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV 119

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYL------RRMQLREAPTD-----ILRLQQLRIL 503
           L +S N I +  E    ++L  L++L L         +   A ++     + RL  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 504 D 504
           D
Sbjct: 180 D 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 15/141 (10%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI--LTSLSSLSCLKLDNNP 438
           E  +L      I+++   LS+  + + L LS N I+     I  L+ + +L  L L  N 
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK----ISSLSGMENLRILSLGRNL 81

Query: 439 LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL 497
           ++++  +       L+ L +SYN IASL        L +L+ LY+   ++     +I +L
Sbjct: 82  IKKI-ENLDAVADTLEELWISYNQIASL---SGIEKLVNLRVLYMSNNKITN-WGEIDKL 136

Query: 498 QQ---LRILDLSQNSLQSIPE 515
                L  L L+ N L +  +
Sbjct: 137 AALDKLEDLLLAGNPLYNDYK 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           T ++        +P  +   A    L L  N +K  P+ +   L+SL+ L L  N L+ +
Sbjct: 10  TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQL 500
           P+  F  +  L  L+LS N + SLP    F  L  L+EL L   QL+  P  +  +L QL
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126

Query: 501 RILDLSQNSLQSIPE 515
           + L L QN L+S+P+
Sbjct: 127 KDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
             +  L LE  +L ++P+ +++    +T+L L  N +Q LP  + +   SL  L LS N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P+ +   L+ L  L L+ N L+ +P   F  +  L+ L L  N + S+P+   F  
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VFDR 146

Query: 474 LPHLQELYL 482
           L  LQ ++L
Sbjct: 147 LTSLQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 362 LSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L G  L ++P+ ++     +T L+LS N +Q LP  +      L+ L L+ N+++  P
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           D +   L+ L  L+L  N L+ VP   F  +  LQ + L  N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 38/163 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDL  NSL  LP  +  ++T+L +L L GN L++L + + N  T               
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--------------- 76

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                               +   L+L    L ++P+ +++   ++ +L L+ N +Q LP
Sbjct: 77  --------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 7e-14
 Identities = 48/255 (18%), Positives = 80/255 (31%), Gaps = 22/255 (8%)

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
            L   +  +   +  G   +I K  +L++L +    +     S +      +L    S L
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLGI--SGL 97

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-----WEAGEITKLDLS 388
            E        T      +          L+L  ++ +   + +     W    +  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 389 RNSIQELPPELSS-CASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVP 443
           +        E      +L TL LS N                  +L  L L N  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 444 SDG---FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
                       LQ LDLS+N +      P       L  L L    L++ P  +    +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275

Query: 500 LRILDLSQNSLQSIP 514
           L +LDLS N L   P
Sbjct: 276 LSVLDLSYNRLDRNP 290

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 9e-12
 Identities = 49/251 (19%), Positives = 79/251 (31%), Gaps = 25/251 (9%)

Query: 275 LRLSVLDLSNNSLSGL----PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           L L  L +    +          +  ++ L++L L    +       +   T   L  L 
Sbjct: 68  LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
            R     +   +T    L  +   L    K LS+   +      E       ++ LDLS 
Sbjct: 128 LR-----NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 390 NSIQELPPELSSCA-----SLQTLILSRNKIKDWPDAI---LTSLSSLSCLKLDNNPLRQ 441
           N        +S+       +LQ L L    ++           +   L  L L +N LR 
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 442 VPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
                       L  L+LS+  +  +P+  P      L  L L   +L   P     L Q
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRNP-SPDELPQ 297

Query: 500 LRILDLSQNSL 510
           +  L L  N  
Sbjct: 298 VGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 60/299 (20%), Positives = 99/299 (33%), Gaps = 45/299 (15%)

Query: 201 ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSAL----PAELGKLSK 254
           E  G    L  L    +    +   + I    SL    +    + +        +  +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 255 LGTLDLHSNQLKEYC----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L  L L + ++        +EA    L++L+L N S +     + ++    K  L    +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
               S   +     +   L +                       L ++      E   +S
Sbjct: 157 AQAHSLNFSCEQVRVFPALST-----------------------LDLSDNPELGERGLIS 193

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCA----SLQTLILSRNKIKDWPDAILTS- 425
           A+    +    +  L L    ++      S+ A     LQ L LS N ++D   A     
Sbjct: 194 ALCPLKFPT--LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484
            S L+ L L    L+QVP         L +LDLSYN   L  NP    LP +  L L+ 
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN--RLDRNPSPDELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 44/224 (19%), Positives = 81/224 (36%), Gaps = 20/224 (8%)

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMN 368
           L+ + +    G    ++K L   L       A      L      L ++  +EL+LE + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 369 LSA---IPSEIWEAGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPD 420
           ++     P       ++  L+L   S       L+         L+ L +++    ++  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 421 AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYN-IASLPENPP--FSS 473
             +    +LS L L +NP       + +      P LQ+L L    + +         ++
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 474 LPHLQELYLRRMQLREAPTDI--LRLQQLRILDLSQNSLQSIPE 515
              LQ L L    LR+A          QL  L+LS   L+ +P+
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 53/285 (18%), Positives = 85/285 (29%), Gaps = 59/285 (20%)

Query: 43  EAVDLQKLILAHNNI--EKLKEDLRNLPL-----LTVLNVSHNKLSELPAAIGELHMLKS 95
           +++ L++L +    I    L   LR L +     LT+ N+     +  P        L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L++   S       +               LK L               +     +   +
Sbjct: 126 LNLRNVSWATRDAWLAEL-----QQWLKPGLKVL-------------SIAQAHSLNFSCE 167

Query: 156 L-ADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSL---- 206
                  +S LD+  N        + A     +  L  L      +        +L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
            +L  LDL  N +     + S                         S+L +L+L    LK
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS---------------------CDWPSQLNSLNLSFTGLK 266

Query: 267 EYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           +  V       LSVLDLS N L   P    ++  +  L L GNP 
Sbjct: 267 Q--VPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 52/321 (16%), Positives = 79/321 (24%), Gaps = 60/321 (18%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELSSCASLQTLILSRNKIKD 417
                   +  L L  N   D
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            LNL N S       + +           W    L+ L +A  +      E +R  P L+
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ--------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 72  VLNVSHNKLSELPAAI-----GELHMLKSLDVSFNSIMKIPDEIGSATA----LVKFDCS 122
            L++S N        I      +   L+ L +    +        +  A    L   D S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 123 SNQLKELPSSLG--RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
            N L++   +        L+    S   +  +P+ L   +K+S LD+  N+L        
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--SP 292

Query: 181 ASWTMLTELIASKNLL 196
                +  L    N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 47  LQKLILAHNNIEKL----KEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSF 100
           LQ L L +  +E               L  L++SHN L +   A        L SL++SF
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 101 NSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150
             + ++P  + +   L   D S N+L   PS       + +     N   
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 13/197 (6%)

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRNSIQEL--PPELSSCASLQTLIL 410
             S    + S     L A   E++  G  +  L    ++  +L    ++    SL+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 411 SRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
              +I     +    +  +S L  L L+N  +         +     +  L+    S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 468 NPPFSS------LPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEVTYIF 520
              + +       P L+ L + +        + +R    L  LDLS N       +    
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 521 VMLQKKSINTELVDKNQ 537
             L+  ++    +    
Sbjct: 196 CPLKFPTLQVLALRNAG 212

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L L++N L ++ SDG F  +P L  L+L  N +  +  N  F    H+QEL L   +++E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKE 92

Query: 490 APTDIL-RLQQLRILDLSQNSLQSIPE 515
               +   L QL+ L+L  N +  +  
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSL 426
           L  IP +I      T+L L+ N +  +  +        L  L L RN++           
Sbjct: 20  LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           S +  L+L  N ++++ +  F  +  L+ L+L  N I+ +     F  L  L  L L
Sbjct: 78  SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNL 133

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIW--EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 413
           + + EL L    L  I S+        + KL+L RN +  + P      + +Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KIK+  + +   L  L  L L +N +  V    F+ +  L  L+L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +L L+   L+ I    +E A  I +L L  N I+E+  ++      L+TL L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 418 WPDAILTSLSSLSCLKLDNNPL 439
                   L+SL+ L L +NP 
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 66.6 bits (163), Expect = 6e-13
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +P  I    ++T+L L  N    +P ELS+   L  + LS N+I    +   ++++ 
Sbjct: 22  LKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           L  L L  N LR +P   F  +  L++L L  N I+ +PE   F+ L  L  L +
Sbjct: 80  LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-AFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKI 415
               EL L+G   + +P E+     +T +DLS N I  L  +  S+   L TLILS N++
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +  P      L SL  L L  N +  VP   F D+  L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L LD N    VP +   +   L ++DLS N I++L     FS++  L  L L   +LR  
Sbjct: 36  LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCI 93

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPE 515
           P      L+ LR+L L  N +  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           ++  L LS N ++ +PP       SL+ L L  N I   P+     LS+LS L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.4 bits (170), Expect = 7e-13
 Identities = 59/318 (18%), Positives = 95/318 (29%), Gaps = 62/318 (19%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLT---------VLSNNLIASW----TMLTELIASKNLL--NGMP 200
           L+  + +  L +  N L           L    +         L  +I  +N L    M 
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177

Query: 201 ---ETIGSLSRLIRLDLHQNRI------LSIPSSISGCCSLAEFYMGNNAL-----SALP 246
              +T  S   L  + + QN I        +   ++ C  L    + +N       SAL 
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEA--------CQLRLSVLDLSNNSLS-----GLPPE 293
             L     L  L L+   L      A          + L  L L  N +       L   
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297

Query: 294 IG-KMTTLRKLLLTGNPL 310
           I  KM  L  L L GN  
Sbjct: 298 IDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 58/349 (16%), Positives = 102/349 (29%), Gaps = 83/349 (23%)

Query: 209 LIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTL 258
           +    L  + I      S+ + +    S+ E  +  N +       L   +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 259 DLHSNQ---LKEYCVEACQL---------RLSVLDLSNNSL-----SGLPPEIGKMTTLR 301
           +        +K+   EA +L         +L  + LS+N+        L   + K T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            L L  N L            P     +   L E   ++ +     L      +      
Sbjct: 126 HLYLHNNGL-----------GPQAGAKIARALQELAVNKKAKNAPPL----RSIICGRNR 170

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE------LPPELSSCASLQTLILSRNKI 415
           L    M              +  + + +N I+       L   L+ C  L+ L L  N  
Sbjct: 171 LENGSM--KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 416 KDWPDAI-----LTSLSSLSCLKLDNNPLRQVPSDGFKDI---------PMLQILDLSYN 461
                +      L S  +L  L L++  L    + G   +           LQ L L YN
Sbjct: 229 TH-LGSSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 462 ----------IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                        + E      +P L  L L   +  E    +  ++++
Sbjct: 285 EIELDAVRTLKTVIDEK-----MPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 40/198 (20%)

Query: 353 TRLSVTSKELSLEGMN---LSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCAS 404
            R S+  K L L+ +      ++ + + E   + ++ LS N+I     + L   ++S   
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 405 LQTLILSRNKIKDWPDAI----------LTSLSSLSCLKLDNNPLR----QVPSDGFKDI 450
           L+    S        D I          L     L  ++L +N       +   D     
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 451 PMLQILDLSYN-------------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-- 495
             L+ L L  N             +  L  N    + P L+ +   R +L          
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 496 ---RLQQLRILDLSQNSL 510
                + L  + + QN +
Sbjct: 182 TFQSHRLLHTVKMVQNGI 199

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 36/289 (12%), Positives = 81/289 (28%), Gaps = 89/289 (30%)

Query: 277 LSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
           +    L  ++++      +   + +  ++++++L+GN +         G   A  ++L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI---------GTEAA--RWLSE 54

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---------- 381
            +   +                      +      +    +  EI EA            
Sbjct: 55  NIASKK--------------------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94

Query: 382 -ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-------------WPDAI 422
            +  + LS N+      + L   LS    L+ L L  N +                 +  
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 423 LTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDLSYN----------IASLPEN 468
             +   L  +    N L     +  +  F+   +L  + +  N          +      
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG--- 211

Query: 469 PPFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSLQS 512
              +    L+ L L+        +  L         LR L L+   L +
Sbjct: 212 --LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 42/313 (13%), Positives = 90/313 (28%), Gaps = 78/313 (24%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS-----GLPPEIGKM 297
           + + S +    L  + +     ++          +  + LS N++       L   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
             L     +      ++  +        L+ L   L +                   + +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEA-----LRLLLQALLKC-------------PKLHTVRL 101

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--------------LPPELSSCA 403
           +             +   + +   +  L L  N +                +  +  +  
Sbjct: 102 SDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 404 SLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPML 453
            L+++I  RN++++     W      S   L  +K+  N +R      +  +G      L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 454 QILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-------RL 497
           ++LDL  N         +A         S P+L+EL L    L       +         
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 498 QQLRILDLSQNSL 510
             L+ L L  N +
Sbjct: 274 IGLQTLRLQYNEI 286

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 74/455 (16%), Positives = 146/455 (32%), Gaps = 80/455 (17%)

Query: 46  DLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDV 98
           D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N +     ++G    +         L+     + + L+L +   +      L   L  
Sbjct: 64  RSNEL----GDVG-VHCV------LQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 159 CSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSR 208
              + +L +  N L      +L   L+     L +L      L+      +   + +   
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 209 LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGT 257
              L +  N I       +   +    C L    + +  ++      L   +   + L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 258 LDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLL 305
           L L SN+L +  +            RL  L +    ++      L   +    +L++L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 306 TGNPL-----RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
            GN L     R L  +L+       L+ L   +     + A  +     +     +    
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQ--LESLW--VKSCSFTAACCSH---FSSVLAQNRFLL 344

Query: 361 ELSLEGMNLS-AIPSEIWEAGE-----ITKLDLSRNSI-----QELPPELSSCASLQTLI 409
           EL +    L  A   E+ +        +  L L+   +       L   L +  SL+ L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 410 LSRNKIKDW-----PDAILTSLSSLSCLKLDNNPL 439
           LS N + D       +++      L  L L +   
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 73/493 (14%), Positives = 141/493 (28%), Gaps = 127/493 (25%)

Query: 70  LTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSI-----MKIPDEIGSATALVKFDCS 122
           +  L++   +LS+      +  L   + + +    +       I   +    AL + +  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 123 SNQL-----KELPSSLGRC------LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171
           SN+L       +   L         L+L +   +      L   L     + +L +  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 172 LT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRI-- 219
           L      +L   L+     L +L      L+      +   + +      L +  N I  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 220 ---LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCV 270
                +   +    C L    + +  ++      L   +   + L  L L SN+L +  +
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 271 EA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
                       RL  L +    ++      L   +    +L++L L GN L        
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-------- 296

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
                              D  A    E L+    +L    + L ++  + +A       
Sbjct: 297 ------------------GDEGARLLCETLLEPGCQL----ESLWVKSCSFTAA------ 328

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLK 433
                               L+    L  L +S N+++D         +    S L  L 
Sbjct: 329 ------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 434 LDNNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHL 477
           L +  +          +         L+ LDLS N         +      P       L
Sbjct: 377 LADCDVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG----CLL 429

Query: 478 QELYLRRMQLREA 490
           ++L L  +   E 
Sbjct: 430 EQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 77/456 (16%), Positives = 143/456 (31%), Gaps = 111/456 (24%)

Query: 116 LVKFDCSSNQL-----KELPSSLGRC--LNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
           +   D    +L      EL   L +C  + L D   +      +   L     +++L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L             + + + + +             ++ +L L    +     + +G
Sbjct: 65  SNELGD------VGVHCVLQGLQTPS------------CKIQKLSLQNCCL-----TGAG 101

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLD 281
           C  L+               L  L  L  L L  N L +  ++         Q RL  L 
Sbjct: 102 CGVLSS-------------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 282 LSNNSLS-----GLPPEIGKMTTLRKLLLTGNPL-----RTLRSSLVNGPTPALLKYLRS 331
           L   SLS      L   +      ++L ++ N +     R L   L +  +P  L+ L+ 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALK- 205

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGE-----ITKL 385
            L     +  +      +        + +EL+L    L  +  +E+          +  L
Sbjct: 206 -LESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 386 DLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLD 435
            +    I      +L   L +  SL+ L L+ N++ D       + +L     L  L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 436 NNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
           +       +               L  L +S N         +      P       L+ 
Sbjct: 322 SCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP----GSVLRV 374

Query: 480 LYLRRMQLREAPTDIL-----RLQQLRILDLSQNSL 510
           L+L    + ++    L         LR LDLS N L
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 67/382 (17%), Positives = 118/382 (30%), Gaps = 88/382 (23%)

Query: 186 LTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMG 238
           +  L      L+     E +  L +   + L    +       I S++    +LAE  + 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 239 NNALS-----ALPAELGKLS-KLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNS 286
           +N L       +   L   S K+  L L +  L                 L  L LS+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L     + G       LL     L  L+       + A  + L S L             
Sbjct: 125 LG----DAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAK---------- 169

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIP-SEIWEA-----GEITKLDLSRNSI-----QEL 395
                        KEL++   +++      + +       ++  L L    +     ++L
Sbjct: 170 ------PDF----KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 396 PPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
              ++S ASL+ L L  NK+ D         +L   S L  L +    +    + G  D+
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDL 276

Query: 451 -------PMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
                    L+ L L+ N         +      P       L+ L+++      A    
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEP----GCQLESLWVKSCSFTAACCSH 332

Query: 495 L-----RLQQLRILDLSQNSLQ 511
                 + + L  L +S N L+
Sbjct: 333 FSSVLAQNRFLLELQISNNRLE 354

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           + L  +R+   +    L    +L  L +   + ++      L  L  L  L +  + LR 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           V  D F   P L  L+LS+N + SL        L  LQEL L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 7e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI 455
           P+         L  +R+   D     L    +L+ L ++N   L+ +     + +  L+ 
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511
           L +  + +  +  +  F   P L  L L    L       ++   L+ L LS N L 
Sbjct: 61  LTIVKSGLRFVAPDA-FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRR 484
           S L C     +               L  L +     +  L        L  L+ L + +
Sbjct: 11  SGLRCT---RDGALDSL-HHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVK 65

Query: 485 MQLREAPTDILR-LQQLRILDLSQNSLQSIPE 515
             LR    D      +L  L+LS N+L+S+  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 360 KELSLEGMN-LSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
            EL +E    L  +    +   GE+  L + ++ ++ + P+       L  L LS N ++
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 417 DWPDAILTSLSSLSCLKLDNNPLR 440
                 +  L SL  L L  NPL 
Sbjct: 94  SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LD  +++  ++    +   +L+ L L    +     + L  L  L  L+L  N +     
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD 88

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAP----TDILRLQQ 499
              + +P L  L+LS N +  +    P   L  L+ L L   ++        +    L Q
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 500 LRILDLSQNSLQSIPE 515
           L  LD      Q  P+
Sbjct: 149 LTYLDGYDREDQEAPD 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L     N   I     E   +  L L    +  +   L     L+ L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRI 83

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--F 471
               D +   L +L+ L L  N L+ + + +  K +  L+ LDL    + +L +     F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 472 SSLPHLQELYLRRMQLREAP 491
             LP L  L     + +EAP
Sbjct: 144 KLLPQLTYLDGYDREDQEAP 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
           + +D+ R    EL     + A+++ L+L   K  D   + +     +L  L L N  L  
Sbjct: 6   SGMDMKRRIHLEL--RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILR-LQQ 499
           V       +P L+ L+LS N      +     LP+L  L L   +L++  T + L+ L+ 
Sbjct: 64  V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 500 LRILDLSQNSLQSIPE-VTYIFVMLQK 525
           L+ LDL    + ++ +    +F +L +
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQ 148

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLS 427
           L+++P+ I      T+L+L  N +Q LP  +      L  L LS+N+I+  PD +   L+
Sbjct: 19  LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
            L+ L L  N L+ +P+  F  +  L+ L L  N + S+P+   F  L  LQ+++L
Sbjct: 77  KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L+L++N L+ +P   F  +  L  L LS N I SLP+   F  L  L  LYL   +L+  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHENKLQSL 91

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPE 515
           P  +  +L QL+ L L  N L+S+P+
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
             L+L  N + SLP    F  L  L +L L + Q++  P  +  +L +L IL L +N LQ
Sbjct: 31  TRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 512 SIPE 515
           S+P 
Sbjct: 90  SLPN 93

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
            ++  L LE   L ++P  +++   ++TKL LS+N IQ LP  +      L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++  P+ +   L+ L  L LD N L+ VP   F  +  LQ + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +LSL    + ++P  +++   ++T L L  N +Q LP  +      L+ L L  N++K 
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114

Query: 418 WPDAILTSLSSLSCLKLDNNP 438
            PD I   L+SL  + L  NP
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 346 EDLITMATRLS--VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
            +LI  A + +  V  +EL L G  +  I +      +   +D S N I++L        
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLR 64

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462
            L+TL+++ N+I    + +  +L  L+ L L NN L ++   D    +  L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN- 123

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
                  P ++  H    Y   +        I ++ Q+R+LD
Sbjct: 124 -------PVTNKKH----YRLYV--------IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 9/145 (6%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           + L+   I++   + ++    + L L   KI    + +  +L     +   +N +R++  
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ---LR 501
           DGF  +  L+ L ++ N           +LP L EL L    L E   D+  L     L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLT 116

Query: 502 ILDLSQNSLQSIPE-VTYIFVMLQK 525
            L + +N + +      Y+   + +
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQ 141

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SN 263
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
            N  L  VP+     IP   Q L L+ N I  L     F  L +LQ+LY    +L   PT
Sbjct: 20  QNIRLASVPAG----IPTDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT 74

Query: 493 DIL-RLQQLRILDLSQNSLQSIPE 515
            +  +L QL  LDL+ N L+SIP 
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKSIPR 98

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.1 bits (123), Expect = 9e-08
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             ++ + + L+++P+ I    +  +L L+ N I +L P +     +LQ L  + NK+   
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           T ++     +  +P  +      Q L L+ N+I      +   L +L  L  ++N L  +
Sbjct: 15  TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           P+  F  +  L  LDL+ N + S+P    F +L  L  +YL
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRG-AFDNLKSLTHIYL 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            + +L  + N +  +P  +      L  L L+ N +K  P     +L SL+ + L NNP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
               L  VP+     IP   Q+L L  N I  L     F  L  L  L L   QL   P 
Sbjct: 17  SGKSLASVPTG----IPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA 71

Query: 493 DIL-RLQQLRILDLSQNSLQSIPE 515
            +  +L QL  L L+ N L+SIP 
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKSIPR 95

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             +   G +L+++P+ I        L L  N I +L P +      L  L L  N++   
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           T +D S  S+  +P  +    + Q L L  N+I      +   L+ L+ L LDNN L  +
Sbjct: 12  TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           P+  F  +  L  L L+ N + S+P    F +L  L  ++L
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWL 109

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           ++T+LDL  N +  LP  +      L  L L+ N++K  P     +L SL+ + L NNP
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 24/148 (16%)

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           KEL L+    +    E    E  E+  L      +  +   L     L+ L LS N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSG 78

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
             + +     +L+ L L  N ++ + + +  K +  L+ LDL             ++L  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--------EVTNLND 130

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILD 504
               Y   +           L QL  LD
Sbjct: 131 ----YRENV--------FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 401 SCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
           + + ++ L+L  ++  +   + +      L  L   N  L  +       +  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ---LRILDLSQNSLQSIPE- 515
            N  S          P+L  L L   ++++  + I  L++   L+ LDL    + ++ + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 516 VTYIFVMLQK 525
              +F +L +
Sbjct: 132 RENVFKLLPQ 141

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 65/401 (16%), Positives = 118/401 (29%), Gaps = 101/401 (25%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----GEI 382
            L +  P                    +    KE+             I        G+ 
Sbjct: 275 ALGAAFPNI-------------QKIILVDKNGKEIHPSHSIP------ISNLIRELSGKA 315

Query: 383 TKLDLSRNSI------QELPPELSSCASLQTLILSRNKIKD 417
               L    +      Q    +L+    L+  I +   + +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 65/420 (15%), Positives = 116/420 (27%), Gaps = 119/420 (28%)

Query: 145 SNNCITS-----LPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKN 194
           +           + E  +    ++ LD+  N L       L      +   +T L  S N
Sbjct: 2   NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61

Query: 195 LLNGMPETIGSLSR--------LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
            L    +    L +        +  L+L  N +     S      L +            
Sbjct: 62  SLG--FKNSDELVQILAAIPANVTSLNLSGNFL-----SYKSSDELVKTLAAIP------ 108

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--GLPPEIGKM 297
                   +  LDL  N                    ++ L+L  N L       E+ ++
Sbjct: 109 ------FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD-ELIQI 161

Query: 298 -----TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
                  +  L L GN L                  L   L     S             
Sbjct: 162 LAAIPANVNSLNLRGNNL-----------ASKNCAELAKFLASIPAS------------V 198

Query: 353 TRLSVTSKELSLEGMN-----LSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSC 402
           T L +++  L L+         S+IP+ +        L+L  N +     + L     S 
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHV------VSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
             LQT+ L  + +K+       +L +                  F +I  + ++D +   
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGA-----------------AFPNIQKIILVDKNGKE 295

Query: 462 --------IASLPENPPFS-SLPHLQELYLRRMQLREAPTDILRL-QQLRILDLSQNSLQ 511
                   I++L         +P L    L   Q  +   + L +  +LR    +   L 
Sbjct: 296 IHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWP-----DAILTSLSSLS 430
           IT LDL  N              S+  AS+ +L L  N +           +    ++++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 431 CLKLDNNPLR----QVPSDGFKDIP-MLQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L        +     IP  +  LDLS N         +A +  + P     H
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP----NH 226

Query: 477 LQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSLQSI 513
           +  L L    L     + L      L+ L+ + L  + ++++
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 49/312 (15%), Positives = 91/312 (29%), Gaps = 84/312 (26%)

Query: 47  LQKLILAHNNI-----EKLKEDLR-NLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDV 98
           L++L LA   +       +   L      L  +N++  +L    L   +      + L +
Sbjct: 74  LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGL 133

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-----LP 153
             NS+     E  +   L       + L      +   L LS     NN +T+     L 
Sbjct: 134 QLNSLG---PE--ACKDL------RDLLLHDQCQI-TTLRLS-----NNPLTAAGVAVLM 176

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLD 213
           E LA  + ++ L +    L      L+A                     +    +L  L+
Sbjct: 177 EGLAGNTSVTHLSLLHTGLGDEGLELLA-------------------AQLDRNRQLQELN 217

Query: 214 LHQNRI-----LSIPSSISGCCSLAEFYMGNN--------ALSALPAELGKLSKLGTLDL 260
           +  N       L++  +     SL   ++  N         L  L       +++     
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 261 HSNQLKEYCVEA-----------------CQLRLSVLDLSNNSLSGLPPE-IGKM----T 298
               + EY                       L L + DL ++  + L P    ++     
Sbjct: 278 EGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG 337

Query: 299 TLRKLLLTGNPL 310
            +R LL      
Sbjct: 338 EVRALLEQLGSS 349

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 381 EITKLDLSRN---SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLD 435
           E+  L+LS N    + ++   +    +L+ L LS N++K   +  L  +  L    L LD
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLD 228

Query: 436 NNPLRQVPSDG-------FKDIPMLQILD 457
            N L     D         +  P L  LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	544
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.12
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.67
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.39
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.7

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-50  Score=422.02  Aligned_cols=478  Identities=20%  Similarity=0.200  Sum_probs=387.5

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~   88 (544)
                      -++++|++++++.+|.++.               +++++|+++++.+..++. .|.++++|++|++++|.++.+ |.+|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~   77 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH   77 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence            3679999999999997664               459999999999987765 899999999999999999877 55889


Q ss_pred             CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccc--cCCccccCCCCceE
Q 009079           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK  164 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~  164 (544)
                      ++++|++|++++|.++.+ |..+..+++|++|++++|.++.++ ..++++++|++|++++|.+.  .+|..+.++++|++
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            999999999999999877 777999999999999999998776 57889999999999999987  46888999999999


Q ss_pred             EEecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCCc--------------
Q 009079          165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS--------------  224 (544)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~~--------------  224 (544)
                      |++++|.++.+....++.+.+|+    ++++++|.++.++.......+|+.|++++|.+.  ..+.              
T Consensus       158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence            99999999988777777777665    799999998877765555558999998887653  1111              


Q ss_pred             ------------------------------------------CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCC
Q 009079          225 ------------------------------------------SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS  262 (544)
Q Consensus       225 ------------------------------------------~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~  262 (544)
                                                                .+..+++|+.++++++.+..+| .+..+++|++|++++
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~  316 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIR  316 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEES
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEccc
Confidence                                                      1444566666777766666666 566666777777777


Q ss_pred             CcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccc
Q 009079          263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS  342 (544)
Q Consensus       263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (544)
                      |.+..++.. ....|++|++++|...... .+..+++|+++++++|.+.....                           
T Consensus       317 n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~---------------------------  367 (606)
T 3vq2_A          317 CQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGC---------------------------  367 (606)
T ss_dssp             CCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEE---------------------------
T ss_pred             ccCcccccC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcc---------------------------
Confidence            766666633 3444777777766433311 35566677777777766543310                           


Q ss_pred             cchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCC--hhhhcCCCCcEEEccCCCCCCCCH
Q 009079          343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPD  420 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~  420 (544)
                            ........+.++++++++|.+..++..+..+++|+.|++++|.++.++  ..+..+++|++|++++|.++...+
T Consensus       368 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  441 (606)
T 3vq2_A          368 ------CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD  441 (606)
T ss_dssp             ------CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred             ------hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence                  001122346799999999999988888888999999999999988854  368899999999999999998877


Q ss_pred             HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-CccccCCC
Q 009079          421 AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQ  498 (544)
Q Consensus       421 ~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~  498 (544)
                      ..+..+++|++|++++|++.+ +....+..+++|+.|++++|.++.+.+..++.+++|+.|++++|.++.+ |..+..++
T Consensus       442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  521 (606)
T 3vq2_A          442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY  521 (606)
T ss_dssp             TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred             hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence            788999999999999999987 4556689999999999999999999999999999999999999999966 77888999


Q ss_pred             CCCeeecCCCCCCCCCcccccce-eeeEeccCCccccccccc
Q 009079          499 QLRILDLSQNSLQSIPEVTYIFV-MLQKKSINTELVDKNQQF  539 (544)
Q Consensus       499 ~L~~L~l~~n~l~~l~~~l~~~~-~L~~l~l~~n~~~~~~~~  539 (544)
                      +|+.|++++|+++.+|+.+..++ +|+.|++++|++.+++..
T Consensus       522 ~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             cCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999999999998888887 599999999999987653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2e-49  Score=414.42  Aligned_cols=480  Identities=19%  Similarity=0.246  Sum_probs=380.1

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~   88 (544)
                      -+++||++..++.+|..+..               ++++|++++|.++.+ +..|.++++|++|++++|.+..+ |.+|.
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~---------------~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPN---------------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCT---------------TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred             CceEECCCCCcccCcCCCCC---------------cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence            35788888888888866543               488888888888866 45788888888888888888765 56788


Q ss_pred             CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccC-CcccccCcCCCEEEcCCCccccCC-ccccCCCCceEE
Q 009079           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL  165 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  165 (544)
                      ++++|++|++++|.++.+ |..+..+++|++|++++|.++.+ +..++++++|++|++++|.+..++ ..+..+++|++|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            888888888888888755 55688888888888888888876 356778888888888888887652 334457888888


Q ss_pred             EecCCccccccchhhcCccccc--eEEcCCCcCCCCcccccCCC------------------------------------
Q 009079          166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS------------------------------------  207 (544)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~------------------------------------  207 (544)
                      ++++|.++.+....++.+++|+  ++++++|.+..++.......                                    
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            8888888887777788888888  77888887765433222222                                    


Q ss_pred             ----------------ceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccch
Q 009079          208 ----------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV  270 (544)
Q Consensus       208 ----------------~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~  270 (544)
                                      +|+.+++++|.++.++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+..+..
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence                            57777777777776654 3777888888888888888888888888888888888888887644


Q ss_pred             hcc--cccccEEEccCCCCCC-CCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchh
Q 009079          271 EAC--QLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE  346 (544)
Q Consensus       271 ~~~--~~~L~~L~l~~~~l~~-l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (544)
                      ..+  ..+|++|++++|.+.. ++. .+..+++|+++++++|.+.......                             
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------------------------  369 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN-----------------------------  369 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST-----------------------------
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc-----------------------------
Confidence            322  2448888888887764 444 3778888888888888876543100                             


Q ss_pred             hhhhhhhcccccceeeecCCCccCCC-chhhccCCCccEEEcCCCCCCCC-C-hhhhcCCCCcEEEccCCCCCCCCHHHH
Q 009079          347 DLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQEL-P-PELSSCASLQTLILSRNKIKDWPDAIL  423 (544)
Q Consensus       347 ~~~~~~~~~~~~l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l-~-~~~~~~~~L~~L~l~~~~l~~~~~~~l  423 (544)
                          ......+.++++++++|.+..+ +..+..+++|++|++++|.++.. + ..+..+++|++|++++|.++...+..+
T Consensus       370 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  445 (606)
T 3t6q_A          370 ----LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF  445 (606)
T ss_dssp             ----TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred             ----hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence                0112235789999999998854 55677789999999999998874 3 348899999999999999998888888


Q ss_pred             hCCCCCCEEECCCCCCCcC---CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc-cCccccCCCC
Q 009079          424 TSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQ  499 (544)
Q Consensus       424 ~~~~~L~~L~l~~n~i~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-i~~~~~~~~~  499 (544)
                      ..+++|++|++++|++.+.   ....+..+++|+.|++++|.++.+.+..|+.+++|+.|++++|.++. .|..+.+++.
T Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  525 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG  525 (606)
T ss_dssp             TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred             hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence            9999999999999999862   23568899999999999999999999999999999999999999984 4677888999


Q ss_pred             CCeeecCCCCCCCC-CcccccceeeeEeccCCccccccccc
Q 009079          500 LRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       500 L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~~  539 (544)
                      | .|++++|+++.+ |..+..+++|+.+++++|++.+++..
T Consensus       526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9 999999999977 55688999999999999999988763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.9e-50  Score=426.03  Aligned_cols=508  Identities=27%  Similarity=0.295  Sum_probs=365.7

Q ss_pred             HHHHhhhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHh---hcCCCCCCEEEcCCC
Q 009079            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KED---LRNLPLLTVLNVSHN   78 (544)
Q Consensus         4 ~~~~~~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~---~~~~~~L~~L~l~~~   78 (544)
                      .+..++.+++||+++|.+. .+|...+            .++++|++|++++|.+... +..   +.++++|++|++++|
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGG------------LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSC------------CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHh------------ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            5778889999999999887 3333222            2257788888888888743 334   678888888888888


Q ss_pred             CCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCccccCCcccc
Q 009079           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA  157 (544)
Q Consensus        79 ~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  157 (544)
                      .+.... .+..+++|++|++++|.++..+..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+....... 
T Consensus       189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-  266 (768)
T 3rgz_A          189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-  266 (768)
T ss_dssp             EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred             cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence            776443 236778888888888877754344778888888888888777 45567777888888888888776332222 


Q ss_pred             CCCCceEEEecCCccc-cccchhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccc-cCCcC-CccCCCCC
Q 009079          158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA  233 (544)
Q Consensus       158 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~  233 (544)
                      .+++|++|++++|.++ .++......+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            6677777777777776 344433333477777777777775 55667777777777777777776 56544 66777777


Q ss_pred             EEEccCCcCC-cCchhhhCCC-CCCEEECCCCcCccc-chhcc---cccccEEEccCCCCCC-CCccccCCCCcceeccC
Q 009079          234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKEY-CVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT  306 (544)
Q Consensus       234 ~l~l~~~~~~-~l~~~l~~~~-~L~~L~l~~~~i~~~-~~~~~---~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~  306 (544)
                      .|++++|.+. .+|..+..++ +|+.|++++|.+.+. +....   ...|++|++++|.+.+ +|..+..+++|++|+++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS  426 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence            7777777776 6666666665 777777777776532 22211   2347777777776664 56666777777777777


Q ss_pred             CCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCCCccEE
Q 009079          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKL  385 (544)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L  385 (544)
                      +|.+.......+... + .++.+.  +..     ...  ...........+.++++++++|.+. .+|..+..+++|++|
T Consensus       427 ~N~l~~~~p~~l~~l-~-~L~~L~--L~~-----n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSL-S-KLRDLK--LWL-----NML--EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             SSEEESCCCGGGGGC-T-TCCEEE--CCS-----SCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CCcccCcccHHHhcC-C-CCCEEE--CCC-----Ccc--cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            776543211111100 0 000000  000     000  0000111223467899999999988 778888889999999


Q ss_pred             EcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCc-CCCC------------------
Q 009079          386 DLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPSD------------------  445 (544)
Q Consensus       386 ~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~-~~~~------------------  445 (544)
                      ++++|.+++ +|.++..+++|++|++++|.++...+..+..+++|+.|++++|++.+ ++..                  
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            999999885 88889999999999999999987666678999999999999998752 2211                  


Q ss_pred             ---------------------------------------------------ccCCCCCcceEecCCcccCCCCCCCCCCC
Q 009079          446 ---------------------------------------------------GFKDIPMLQILDLSYNIASLPENPPFSSL  474 (544)
Q Consensus       446 ---------------------------------------------------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  474 (544)
                                                                         .+..+++|+.|++++|+++...+..++.+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                               23446789999999999999999999999


Q ss_pred             ccCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCcccccc
Q 009079          475 PHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       475 ~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                      +.|+.|+|++|.++ .+|..+..+++|+.||+++|+++ .+|+.+..+++|+.|++++|.+++.
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            99999999999998 88999999999999999999999 7899999999999999999998854

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.7e-49  Score=423.79  Aligned_cols=507  Identities=25%  Similarity=0.300  Sum_probs=411.0

Q ss_pred             HHHHHhhhcceeEcCCCccc-ccch--HHhhcccccCCCCceeeecCccEEecccCccc-chhHhh-cCCCCCCEEEcCC
Q 009079            3 RILKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSH   77 (544)
Q Consensus         3 ~~~~~~~~~~~l~ls~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~   77 (544)
                      +.+..++.+++|||++|.+. .+|.  .+.             ++++|++|++++|.+. .+|..+ .++++|++|++++
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-------------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLG-------------SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             CCCCCCTTCCEEECCSSEEEEEGGGGGGGG-------------GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             hhhccCCCCCEEECCCCcCCCcCCChHHHh-------------CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence            34667889999999999988 4554  222             2688999999999887 445444 8999999999999


Q ss_pred             CCCCCcc-hh---hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccc-cC
Q 009079           78 NKLSELP-AA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SL  152 (544)
Q Consensus        78 ~~~~~l~-~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~  152 (544)
                      |.++..+ ..   +.++++|++|++++|.++.... +..+++|++|++++|.+......++++++|++|++++|.+. .+
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc
Confidence            9998553 34   7899999999999999885533 38899999999999999865555999999999999999998 56


Q ss_pred             CccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCC-CCcccccCC-CceeEEEccCCccc-cCCcCCccC
Q 009079          153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGC  229 (544)
Q Consensus       153 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~  229 (544)
                      +..+..+++|++|++++|.+......  ..+++|++|++++|.+. .+|..+... ++|++|++++|.++ .+|..+..+
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            77899999999999999998864443  27899999999999997 778877664 99999999999998 678889999


Q ss_pred             CCCCEEEccCCcCC-cCchh-hhCCCCCCEEECCCCcCc-ccchhccc--ccccEEEccCCCCCC-CCccccC--CCCcc
Q 009079          230 CSLAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLR  301 (544)
Q Consensus       230 ~~L~~l~l~~~~~~-~l~~~-l~~~~~L~~L~l~~~~i~-~~~~~~~~--~~L~~L~l~~~~l~~-l~~~l~~--~~~L~  301 (544)
                      ++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .++.....  .+|++|++++|.+.+ +++.+..  +++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            99999999999998 78765 899999999999999988 44444332  269999999999886 6666655  78999


Q ss_pred             eeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC-CCchhhccCC
Q 009079          302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAG  380 (544)
Q Consensus       302 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~~~~~~~~  380 (544)
                      +|++++|.+.......+..        . ..+...........  ..........++++.+++++|.+. .+|..+..++
T Consensus       398 ~L~L~~n~l~~~~p~~l~~--------l-~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  466 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSN--------C-SELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK  466 (768)
T ss_dssp             EEECCSSEEEEECCGGGGG--------C-TTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             EEECCCCccccccCHHHhc--------C-CCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence            9999999876432211110        0 00000000000000  001111223468999999999998 7888888899


Q ss_pred             CccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079          381 EITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       381 ~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      +|++|++++|.+++ +|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+.....+..+++|+.|+++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            99999999999985 88889999999999999999998777778999999999999999987666678999999999999


Q ss_pred             CcccCCCCC----------------------------------------------------------------------C
Q 009079          460 YNIASLPEN----------------------------------------------------------------------P  469 (544)
Q Consensus       460 ~n~l~~~~~----------------------------------------------------------------------~  469 (544)
                      +|.++...+                                                                      .
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            997763322                                                                      2


Q ss_pred             CCCCCccCceEeecCCccc-ccCccccCCCCCCeeecCCCCCC-CCCcccccceeeeEeccCCcccccc
Q 009079          470 PFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       470 ~~~~l~~L~~L~ls~n~l~-~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                      .++.+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|+.++.++.|+.||+++|.+++.
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~  695 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR  695 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence            3555788999999999998 78999999999999999999999 7899999999999999999999854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7e-48  Score=408.13  Aligned_cols=495  Identities=22%  Similarity=0.233  Sum_probs=323.2

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccC------------CCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEc
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAG------------EGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV   75 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l   75 (544)
                      +.+++||++++.++.+|...+..+..+.            ..+.|.++++|++|++++|.+..+|. .|.++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            3566666666666666554444422210            01122334556666666666665554 4666666666666


Q ss_pred             CCCCCCCcc-hhhhCCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCCcc-c--ccCcCCCEEEcCCCccc
Q 009079           76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSS-L--GRCLNLSDFKASNNCIT  150 (544)
Q Consensus        76 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~  150 (544)
                      ++|.+..++ .+|.++++|++|++++|.++.. +..+..+++|++|++++|.++.++.. +  ..+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            666666554 3556666666666666655543 33455666666666666665544431 2  23456666666666555


Q ss_pred             cCCc-cccCC---------------------------CCceEEEecCCccccccchhhcCccc--cceEEcCCCcCCCCc
Q 009079          151 SLPE-DLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGMP  200 (544)
Q Consensus       151 ~~~~-~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~  200 (544)
                      .++. .+..+                           ++|++|+++++.+..+....+..++.  |++|++++|.+..++
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            3321 11111                           34455555555555544444555544  778888877776553


Q ss_pred             -ccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCC------cCch----hhhCCCCCCEEECCCCcCccc
Q 009079          201 -ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLGTLDLHSNQLKEY  268 (544)
Q Consensus       201 -~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~------~l~~----~l~~~~~L~~L~l~~~~i~~~  268 (544)
                       ..+..+++|++|++++|.+..+ +..+..+++|+.++++++...      .+|.    .+..+++|++|++++|.+..+
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence             5677777788888877777643 345555666666666554322      2221    344555555555555555544


Q ss_pred             chhccc--ccccEEE----------------------------ccCCCCCCC-CccccCCCCcceeccCCCCCcc-cccc
Q 009079          269 CVEACQ--LRLSVLD----------------------------LSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS  316 (544)
Q Consensus       269 ~~~~~~--~~L~~L~----------------------------l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~-~~~~  316 (544)
                      ....+.  .+|++|+                            +++|.+.++ +..+..+++|+.|++++|.+.. ++. 
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-  423 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-  423 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-
Confidence            333221  2244444                            444444442 3334455555555555554432 111 


Q ss_pred             ccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCC--
Q 009079          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQ--  393 (544)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~--  393 (544)
                                                        ......+.++++++++|.+..++ ..+..+++|+.|++++|.++  
T Consensus       424 ----------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          424 ----------------------------------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             ----------------------------------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             ----------------------------------ccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence                                              11122457899999999987554 45666899999999999875  


Q ss_pred             -CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCC--------CccCCCCCcceEecCCcccC
Q 009079          394 -ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--------DGFKDIPMLQILDLSYNIAS  464 (544)
Q Consensus       394 -~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~--------~~l~~~~~L~~L~l~~n~l~  464 (544)
                       .+|..+..+++|+.|++++|.++.+++..|..+++|++|++++|++..+..        ..+..+++|+.|++++|.++
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence             367889999999999999999999998889999999999999999987532        23788999999999999999


Q ss_pred             CCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCCCcc-cc-cceeeeEeccCCcccccccc
Q 009079          465 LPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPEV-TY-IFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       465 ~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l~~~-l~-~~~~L~~l~l~~n~~~~~~~  538 (544)
                      .+....|+.+++|+.|++++|.++.+|... ..+++|+.|++++|+++.+++. +. .+++|+.+++++|++.+++.
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            998888999999999999999999887764 5799999999999999988643 55 78999999999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-46  Score=396.93  Aligned_cols=508  Identities=22%  Similarity=0.301  Sum_probs=313.5

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhhh
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~   88 (544)
                      -+.+||++++++.+|.++.               +++++|+++++.+..++. .|.++++|++|++++|.++.+ |.++.
T Consensus         6 ~~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   70 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ   70 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred             CCeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence            3679999999999997654               357888888887776654 577788888888888777755 45777


Q ss_pred             CCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCceEE
Q 009079           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL  165 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L  165 (544)
                      ++++|++|++++|.++.+|. .|..+++|++|++++|.++.++ ..++++++|++|++++|.+... +..+.++++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            78888888888887777765 4777888888888888777665 4577778888888888877644 3456677788888


Q ss_pred             EecCCccccccchhhc--CccccceEEcCCCcCCCCc-ccccCC---------------------------CceeEEEcc
Q 009079          166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGSL---------------------------SRLIRLDLH  215 (544)
Q Consensus       166 ~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~~---------------------------~~L~~L~l~  215 (544)
                      ++++|.++.+....+.  .+++|++|++++|.+..++ ..+..+                           ++|+.|+++
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            8887777766655443  3467777777777765442 223222                           345555555


Q ss_pred             CCccccC-CcCCccCCC--CCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCC-
Q 009079          216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLS-  288 (544)
Q Consensus       216 ~~~~~~l-~~~~~~~~~--L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~-  288 (544)
                      +|.+..+ +..+..++.  |+.|++++|.+..+ +..+..+++|+.|++++|.+.++....+.  .+|+.+++++|... 
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            5555532 344444433  66677766666644 34566666666666666666654332221  22555555544222 


Q ss_pred             -----CCCc----cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhh---------------------cCCCCCc
Q 009079          289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS---------------------RLPENED  338 (544)
Q Consensus       289 -----~l~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~  338 (544)
                           .+|.    .+..+++|+++++++|.+..+....+.+...  ++.+..                     .+.....
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L  388 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL  388 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT--CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred             ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC--CcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence                 1221    2444455555555555444433222211000  000000                     0000000


Q ss_pred             cccccchhhhhhhhhcccccceeeecCCCccC-CCc-hhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCC
Q 009079          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKI  415 (544)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~i~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l  415 (544)
                      ....  ............++++.+++++|.+. .++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+
T Consensus       389 ~~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          389 TKNK--ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             TTSC--CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCC--CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence            0000  00000011122345666666666654 233 3444556666666666665553 33456666677777766665


Q ss_pred             CC--CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCC--------CCCCCCccCceEeecCC
Q 009079          416 KD--WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELYLRRM  485 (544)
Q Consensus       416 ~~--~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ls~n  485 (544)
                      +.  ..+..|..+++|++|++++|+++.++...+.++++|++|++++|.++.+..        ..|+.+++|+.|++++|
T Consensus       467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            42  234446777888888888888887777777888888888888887766532        23677788888888888


Q ss_pred             cccccCcc-ccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCccccccc
Q 009079          486 QLREAPTD-ILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       486 ~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      .++.+|.. +..+++|+.|++++|+++.+|+. +..+++|+.|++++|.+....
T Consensus       547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            88877754 56788888888888888877544 578888888888888877543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.2e-47  Score=400.96  Aligned_cols=456  Identities=21%  Similarity=0.235  Sum_probs=377.6

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~   86 (544)
                      +.+++||+++|.++.++...+..            +++|++|++++|.+..+ |.+|.++++|++|++++|.++.+ |.+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            67899999999999888766655            57799999999988866 45788999999999999988877 678


Q ss_pred             hhCCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCc--cCCcccccCcCCCEEEcCCCccccCC-ccccCCCCc
Q 009079           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L  162 (544)
                      |.++++|++|++++|.++.++ ..+..+++|++|++++|.+.  .+|..++++++|++|++++|.+..++ ..+..+.+|
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            889999999999999888776 56888999999999999887  46788889999999999999887553 334444433


Q ss_pred             ----eEEEecCCccccccchhhcCccccceEEcCCCcCC-----------------------------------------
Q 009079          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----------------------------------------  197 (544)
Q Consensus       163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  197 (544)
                          .+|++++|.++.++...+... +|++|++++|.+.                                         
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                478888888877777666554 6777777776542                                         


Q ss_pred             -----------------CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEEC
Q 009079          198 -----------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL  260 (544)
Q Consensus       198 -----------------~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l  260 (544)
                                       +....+..+++|+.++++++.+..++ .+..+++|+.+++++|.+..+|. + .+++|++|++
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l  335 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTL  335 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceeec
Confidence                             11112556788999999999999887 88899999999999999999984 4 9999999999


Q ss_pred             CCCcCcccchhcccccccEEEccCCCCCCC---CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCC
Q 009079          261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE  337 (544)
Q Consensus       261 ~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (544)
                      ++|............+|++|++++|.+...   +..+..+++|++|++++|.+..++...                    
T Consensus       336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------------  395 (606)
T 3vq2_A          336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF--------------------  395 (606)
T ss_dssp             ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC--------------------
T ss_pred             cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc--------------------
Confidence            999544333333445699999999998875   677899999999999999987654211                    


Q ss_pred             ccccccchhhhhhhhhcccccceeeecCCCccCCCch--hhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCC
Q 009079          338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK  414 (544)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~  414 (544)
                                      ...+.++.+++++|.+..+++  .+..+++|+.|++++|.++. .|..+..+++|++|++++|.
T Consensus       396 ----------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          396 ----------------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             ----------------TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             ----------------cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence                            113578999999999986654  67788999999999999987 66778999999999999999


Q ss_pred             CCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc
Q 009079          415 IKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD  493 (544)
Q Consensus       415 l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~  493 (544)
                      +++ ..+..+..+++|++|++++|++.+++...+..+++|+.|++++|+++...+..++.+++|+.|++++|.++.+|..
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            887 4556678999999999999999998888899999999999999999999999999999999999999999999998


Q ss_pred             ccCCC-CCCeeecCCCCCCCCCcc
Q 009079          494 ILRLQ-QLRILDLSQNSLQSIPEV  516 (544)
Q Consensus       494 ~~~~~-~L~~L~l~~n~l~~l~~~  516 (544)
                      +..++ +|+.|++++|++.+-++.
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             HhhhcccCcEEEccCCCcccCCcc
Confidence            88887 699999999999865443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.2e-47  Score=395.62  Aligned_cols=459  Identities=20%  Similarity=0.232  Sum_probs=379.5

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCc-chh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~   86 (544)
                      ..+++||+++|.++.+++..+..            +++|++|++++|.+..+ |.+|.++++|++|++++|.+..+ |.+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  100 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSR------------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA  100 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTT------------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred             CcCcEEEccCCccCcCChhHhcc------------CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence            47899999999999887655554            67799999999988855 56888999999999999988865 568


Q ss_pred             hhCCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCce
Q 009079           87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMS  163 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~  163 (544)
                      +.++++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|+
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            88899999999999988877 456888899999999999888653 3444588899999999888865 44577788888


Q ss_pred             --EEEecCCccccccchhhcC-------------------------------------------------cc--ccceEE
Q 009079          164 --KLDVEGNKLTVLSNNLIAS-------------------------------------------------WT--MLTELI  190 (544)
Q Consensus       164 --~L~l~~~~~~~~~~~~~~~-------------------------------------------------~~--~L~~L~  190 (544)
                        .|++++|.++.+....+..                                                 +.  ++++++
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence              7888888777655543332                                                 11  678888


Q ss_pred             cCCCcCCCCcc-cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCc-c
Q 009079          191 ASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK-E  267 (544)
Q Consensus       191 l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~-~  267 (544)
                      +++|.+..++. .+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+. .
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            88988887754 58999999999999999999999999999999999999999976 567899999999999999887 4


Q ss_pred             cchhc--ccccccEEEccCCCCCCC---CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccc
Q 009079          268 YCVEA--CQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS  342 (544)
Q Consensus       268 ~~~~~--~~~~L~~L~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (544)
                      ++...  ...+|++|++++|.+...   +..+..+++|++|++++|.+..+....+.                       
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------  397 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-----------------------  397 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-----------------------
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-----------------------
Confidence            44432  234599999999999885   56689999999999999988665432221                       


Q ss_pred             cchhhhhhhhhcccccceeeecCCCccCCCc--hhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCC-
Q 009079          343 TTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDW-  418 (544)
Q Consensus       343 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~-  418 (544)
                                  ..+.++.+++++|.+....  ..+..+++|++|++++|.++. .+..+..+++|++|++++|.+++. 
T Consensus       398 ------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          398 ------------ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             ------------TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred             ------------CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence                        2357899999999988543  336778999999999999987 456689999999999999998762 


Q ss_pred             --CHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccC-cccc
Q 009079          419 --PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDIL  495 (544)
Q Consensus       419 --~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~  495 (544)
                        ....+..+++|++|++++|++.++....+..+++|+.|++++|+++...+..++.++.| .|++++|.++.++ ..+.
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence              23457899999999999999999887889999999999999999999999999999999 9999999999765 4467


Q ss_pred             CCCCCCeeecCCCCCCCCCc
Q 009079          496 RLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       496 ~~~~L~~L~l~~n~l~~l~~  515 (544)
                      .+++|+.|++++|++.+-.+
T Consensus       545 ~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          545 ILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             HHHTSSEEECTTCCEECSGG
T ss_pred             cCCCCCEEeCCCCCccccCC
Confidence            79999999999999986443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.4e-47  Score=391.72  Aligned_cols=474  Identities=21%  Similarity=0.265  Sum_probs=383.8

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-hhhh
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~   88 (544)
                      .++++|++.+++.+|..+.               +++++|+++++.++.++ .+|.++++|++|++++|.++.++ .+|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            4579999999999997553               46999999999999765 48999999999999999999775 5789


Q ss_pred             CCCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceE
Q 009079           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~  164 (544)
                      ++++|++|++++|.++.++ ..|..+++|++|++++|.++.++. .++.+++|++|++++|.+..  +|..+.++++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998775 569999999999999999998875 68899999999999999885  6888999999999


Q ss_pred             EEecCCccccccchhhcCcccc----ceEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCCcC-------------
Q 009079          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSS-------------  225 (544)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~~~-------------  225 (544)
                      |++++|.++.+....++.+++|    .++++++|.+..++.......+|+.+++++|...  .++..             
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999998887778888888    8999999999876544333448999999886322  11111             


Q ss_pred             -----------------CccCC--CCCEEEccCC-cCC-cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccC
Q 009079          226 -----------------ISGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (544)
Q Consensus       226 -----------------~~~~~--~L~~l~l~~~-~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~  284 (544)
                                       +..+.  .++.+++..+ .+. .++..+..+++|++|++++|.+..++.......|++|++++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~  313 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN  313 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence                             11111  1233444443 222 44666788899999999999888877665555789999999


Q ss_pred             CCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079          285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (544)
Q Consensus       285 ~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (544)
                      |.+..+|.  ..+++|+++++++|.+......                                     ...+.++++++
T Consensus       314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l  354 (570)
T 2z63_A          314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL  354 (570)
T ss_dssp             CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred             CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence            98887776  5778899999988875432110                                     12357888999


Q ss_pred             CCCccCCC---chhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCH-HHHhCCCCCCEEECCCCCCC
Q 009079          365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR  440 (544)
Q Consensus       365 ~~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~i~  440 (544)
                      ++|.+...   +..+..+++|++|++++|.++.++..+..+++|++|++++|.++...+ ..+..+++|++|++++|++.
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            98888755   567778899999999999998877778899999999999998887643 45788999999999999998


Q ss_pred             cCCCCccCCCCCcceEecCCcccC-CCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC-ccc
Q 009079          441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EVT  517 (544)
Q Consensus       441 ~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~-~~l  517 (544)
                      ......+..+++|+.|++++|.++ ...+..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ +.+
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            877777889999999999999887 35567789999999999999999866 777888999999999999999774 568


Q ss_pred             ccceeeeEeccCCcccccccc
Q 009079          518 YIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       518 ~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      ..+++|+.|++++|++.+.+.
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTT
T ss_pred             hcccCCcEEEecCCcccCCCc
Confidence            899999999999999988764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-45  Score=392.71  Aligned_cols=490  Identities=22%  Similarity=0.240  Sum_probs=349.4

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCC-CCCc-chhhh
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG   88 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~   88 (544)
                      +..|++++.++.+|. +               .+++++|++++|.++.+ +..|.++++|++|++++|. +..+ |.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            478888888888886 3               24688888888888855 5678888888888888884 4455 56788


Q ss_pred             CCCCccEEEccCCccccC-CccccccCCccEEEcCCCCCcc-CCcc--cccCcCCCEEEcCCCccccCC--ccccCCCCc
Q 009079           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM  162 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L  162 (544)
                      ++++|++|++++|.+..+ |..|..+++|++|++++|.++. ++..  ++++++|++|++++|.+..++  ..+.++++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            888888888888888865 6678888888888888888874 4443  778888888888888887553  467888888


Q ss_pred             eEEEecCCccccccchhhcCc--cccceEEcCCCcCCC-CcccccCCCc------eeEEEccCCcccc-CCcC-------
Q 009079          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS-------  225 (544)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-l~~~-------  225 (544)
                      ++|++++|.++.+....+..+  ++|+.|++++|.+.. .+..+..++.      |+.|++++|.++. .+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            888888888877666666665  677888888777643 3344444433      7777777765431 1111       


Q ss_pred             -----------------------------Ccc--CCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcc
Q 009079          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (544)
Q Consensus       226 -----------------------------~~~--~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~  273 (544)
                                                   +..  .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  25677777777777644 4556777777777777777776654433


Q ss_pred             c--ccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079          274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (544)
Q Consensus       274 ~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (544)
                      .  .+|++|++++|.+..+ +..+..+++|+.|++++|.+..++...+....  .++.+.......       .      
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~Ls~N~l-------~------  375 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRDNAL-------T------  375 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--CCCEEEEETCCS-------C------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--CCCEEECCCCCC-------C------
Confidence            2  3477777777777764 45577777777777777777665543332110  000000000000       0      


Q ss_pred             hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh--hhcCCCCcEEEccCCCCCCCCH-HHHhCCC
Q 009079          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPD-AILTSLS  427 (544)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~  427 (544)
                       .....+.++.+++++|.+..+|..   ...++.+++++|.++.++..  +..+++|+.|++++|.++.+.. ..+..++
T Consensus       376 -~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  451 (844)
T 3j0a_A          376 -TIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP  451 (844)
T ss_dssp             -CCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred             -cccCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence             000134677777777777766654   35678888888888776542  5588999999999999886543 2345678


Q ss_pred             CCCEEECCCCCCCc-----CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCe
Q 009079          428 SLSCLKLDNNPLRQ-----VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI  502 (544)
Q Consensus       428 ~L~~L~l~~n~i~~-----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~  502 (544)
                      +|+.|++++|.+..     .....+.++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|..... ++|+.
T Consensus       452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~  530 (844)
T 3j0a_A          452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEI  530 (844)
T ss_dssp             TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCE
T ss_pred             ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccE
Confidence            99999999999873     3334578889999999999999999999999999999999999999988766554 89999


Q ss_pred             eecCCCCCCCCCcccccceeeeEeccCCccccccccc
Q 009079          503 LDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       503 L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~~~  539 (544)
                      |++++|+++.+++  ..+++|+.+++++|++.+++..
T Consensus       531 L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          531 LDISRNQLLAPNP--DVFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSSSC
T ss_pred             EECCCCcCCCCCh--hHhCCcCEEEecCCCccccccc
Confidence            9999999997643  2345889999999999987764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.2e-45  Score=375.53  Aligned_cols=471  Identities=19%  Similarity=0.231  Sum_probs=378.9

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCcc-hh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AA   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~   86 (544)
                      ......|++++.++.+|..++               +++++|++++|.++.+ +..+.++++|++|++++|.++.++ .+
T Consensus         5 ~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   69 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA   69 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence            344568999999999997654               4699999999999976 468999999999999999999775 58


Q ss_pred             hhCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCc-cccCC-ccccCCCC
Q 009079           87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSK  161 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~  161 (544)
                      |.++++|++|++++|.++.++.. +..+++|++|++++|.++.  .+..++++++|++|++++|. +..++ ..+.++++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence            99999999999999999988765 9999999999999999984  45678999999999999998 56665 57889999


Q ss_pred             ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc-cCCCceeEEEccCCccccCC----cCCccCCCCCEEE
Q 009079          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFY  236 (544)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~l~----~~~~~~~~L~~l~  236 (544)
                      |++|++++|.++......+..+++|++|+++++.+..++..+ ..+++|++|++++|.++.++    .....+++|+.++
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence            999999999999877777999999999999999988777654 56899999999999988652    2234578899999


Q ss_pred             ccCCcCC-----cCchhhhCCCCCCEEECCCCcCcccchh--------cccccccEEEccCCCCCCC------CccccCC
Q 009079          237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKM  297 (544)
Q Consensus       237 l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~~~~~--------~~~~~L~~L~l~~~~l~~l------~~~l~~~  297 (544)
                      ++++.+.     .++..+..+++|+.+++++|.+.++...        .....++.+++.++.+...      +..+...
T Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~  309 (549)
T 2z81_A          230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL  309 (549)
T ss_dssp             EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred             ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence            9999877     2334456788999999999887654322        1223478888888766542      2223345


Q ss_pred             CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC-Cc---
Q 009079          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IP---  373 (544)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~---  373 (544)
                      ++++.+++++|.+..++...+                                   ...+.++++++++|.+.. ++   
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~  354 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNS  354 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             ccceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccch
Confidence            678888888887755432111                                   123578888888888774 32   


Q ss_pred             hhhccCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCC
Q 009079          374 SEIWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (544)
Q Consensus       374 ~~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~  450 (544)
                      ..+..+++|+.|++++|.++.++   ..+..+++|++|++++|.++.++.. +..+++|++|++++|++..++...   .
T Consensus       355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~  430 (549)
T 2z81_A          355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---P  430 (549)
T ss_dssp             TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---C
T ss_pred             hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---c
Confidence            22556789999999999998865   3478899999999999999877643 577899999999999988776432   3


Q ss_pred             CCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccC
Q 009079          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSIN  529 (544)
Q Consensus       451 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~  529 (544)
                      ++|+.|++++|+++...    ..+++|+.|++++|.++.+|. ...+++|+.|++++|+++.++ +.+..+++|+.|+++
T Consensus       431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  505 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH  505 (549)
T ss_dssp             TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred             CCceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence            68999999999888763    578999999999999999987 467999999999999999774 558999999999999


Q ss_pred             Ccccccccc
Q 009079          530 TELVDKNQQ  538 (544)
Q Consensus       530 ~n~~~~~~~  538 (544)
                      +|++.+++.
T Consensus       506 ~N~~~~~~~  514 (549)
T 2z81_A          506 TNPWDCSCP  514 (549)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCccCCCc
Confidence            999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-44  Score=374.61  Aligned_cols=464  Identities=21%  Similarity=0.229  Sum_probs=382.5

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-h
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-A   85 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~   85 (544)
                      .+.+++||+++|.++.+++..+..            +++|++|++++|.+..++ ..|.++++|++|++++|.++.++ .
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             cccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence            357899999999999888665554            678999999999999775 57999999999999999999775 5


Q ss_pred             hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCC-ccccCCCC
Q 009079           86 AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK  161 (544)
Q Consensus        86 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  161 (544)
                      +|.++++|++|++++|.++.++. .+..+++|++|++++|.++.  +|..++++++|++|++++|.+..++ ..+..+.+
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred             hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence            89999999999999999998876 58999999999999999985  6888999999999999999998664 45667777


Q ss_pred             c----eEEEecCCccccccchhhcCccccceEEcCCCcCC--CCcccccCCC----------------------------
Q 009079          162 M----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS----------------------------  207 (544)
Q Consensus       162 L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~----------------------------  207 (544)
                      |    +.+++++|.++.+....+... +|+++++++|...  .++..+..++                            
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~  253 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG  253 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred             cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence            7    899999999998888877765 7999999887432  1122222222                            


Q ss_pred             ----ceeEEEccCC-ccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEE
Q 009079          208 ----RLIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD  281 (544)
Q Consensus       208 ----~L~~L~l~~~-~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~  281 (544)
                          .++.++++++ .+. ..+..+..+++|+.++++++.+..+|..+..+ +|++|++++|.+..++.. ....|+.++
T Consensus       254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~  331 (570)
T 2z63_A          254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLT  331 (570)
T ss_dssp             GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEE
T ss_pred             ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEe
Confidence                2445555544 333 45677888999999999999999999888888 999999999999987763 445699999


Q ss_pred             ccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhccccccee
Q 009079          282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE  361 (544)
Q Consensus       282 l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (544)
                      +++|.+...... ..+++|++|++++|.+......      +                           ......+.++.
T Consensus       332 l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~------~---------------------------~~~~~~~~L~~  377 (570)
T 2z63_A          332 FTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC------S---------------------------QSDFGTTSLKY  377 (570)
T ss_dssp             EESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE------E---------------------------HHHHTCSCCCE
T ss_pred             CcCCcccccccc-ccCCCCCEEeCcCCccCccccc------c---------------------------ccccccCccCE
Confidence            999988774433 7889999999999987643200      0                           01112357999


Q ss_pred             eecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh--hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCC
Q 009079          362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (544)
Q Consensus       362 l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i  439 (544)
                      +++++|.+..++..+..+++|++|++++|.++..+.  .+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus       378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  457 (570)
T 2z63_A          378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  457 (570)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             EECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence            999999999888888889999999999999887543  588999999999999999988888889999999999999998


Q ss_pred             Cc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCCCccc
Q 009079          440 RQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEVT  517 (544)
Q Consensus       440 ~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l~~~l  517 (544)
                      .+ .....+..+++|+.|++++|.++.+.+..++.+++|+.|++++|.++.++. .+..+++|+.|++++|++++-.+..
T Consensus       458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            73 333568999999999999999999999999999999999999999997754 5678999999999999999654333


Q ss_pred             ccc
Q 009079          518 YIF  520 (544)
Q Consensus       518 ~~~  520 (544)
                      +.+
T Consensus       538 ~~~  540 (570)
T 2z63_A          538 DYL  540 (570)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-44  Score=367.56  Aligned_cols=456  Identities=19%  Similarity=0.205  Sum_probs=323.8

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (544)
                      +++||+++.++.+|..++               +++++|++++|.+..++ ..+.++++|++|++++|.++.+ |.+|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            578899998888886543               45889999999888665 5788889999999998888876 568888


Q ss_pred             CCCccEEEccCCccccCCccccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCCccccCCCCc--eEE
Q 009079           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L  165 (544)
                      +++|++|++++|.++.+|..  .+++|++|++++|.++.  +|..++.+++|++|++++|.+..  ..+..+++|  ++|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            88899999988888887766  78888888888888875  45677788888888888877764  245555666  777


Q ss_pred             EecCCcc--ccccchhhcCcc-ccceEEcCCCcCCC-C-cccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079          166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (544)
Q Consensus       166 ~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~  240 (544)
                      ++++|.+  .......+..+. ....+++++|.+.. + +..+..+++|+.+++++|.......                
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----------------  207 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS----------------  207 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH----------------
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc----------------
Confidence            7777766  333322233332 12233444444321 1 1233445555555555443000000                


Q ss_pred             cCCcCchhhhCCCCCCEEECCCCcCcccc-----hhcccccccEEEccCCCCC-CCCccc-----cCCCCcceeccCCCC
Q 009079          241 ALSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNP  309 (544)
Q Consensus       241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~-----~~~~~~~L~~L~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~~~  309 (544)
                      .+.+....+..+++|+.|+++++.+....     ......+|++|++++|.+. .+|..+     ..++.|+.+++++|.
T Consensus       208 ~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~  287 (520)
T 2z7x_B          208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV  287 (520)
T ss_dssp             HHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred             eeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence            01111123455566666666655544211     1111224666777766666 356555     677777777777776


Q ss_pred             CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCC
Q 009079          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR  389 (544)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~  389 (544)
                      + .++...        .                      ...  .....++.++++++.+..++. ...+++|++|++++
T Consensus       288 ~-~~p~~~--------~----------------------~~~--~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          288 F-GFPQSY--------I----------------------YEI--FSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN  333 (520)
T ss_dssp             C-CSCTHH--------H----------------------HHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred             e-ecchhh--------h----------------------hcc--cccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence            5 322100        0                      000  001357777888777765442 14578999999999


Q ss_pred             CCCCC-CChhhhcCCCCcEEEccCCCCCCCCH--HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCC
Q 009079          390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASL  465 (544)
Q Consensus       390 ~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~  465 (544)
                      |.+++ +|..+..+++|++|++++|.+++++.  ..+..+++|++|++++|++.+ ++...+..+++|+.|++++|.++.
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~  413 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD  413 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred             CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence            99988 77889999999999999999998543  568999999999999999998 877778899999999999999876


Q ss_pred             CCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCcccccccc
Q 009079          466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       466 ~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      ..+..+.  ++|+.|++++|.++.+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.+++.
T Consensus       414 ~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          414 TIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             GGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             chhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            6555443  799999999999999999888999999999999999999876 8899999999999999998765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-43  Score=365.65  Aligned_cols=405  Identities=19%  Similarity=0.245  Sum_probs=278.4

Q ss_pred             cCccEEecccCccc-chhHhhcCCCCCCEEEcCCCCCC-------------Ccchhh---------------------h-
Q 009079           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAI---------------------G-   88 (544)
Q Consensus        45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-------------~l~~~~---------------------~-   88 (544)
                      -+++.|+++++.+. .+|.++.++++|++|++++|.+.             .+|...                     . 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            37899999999998 78899999999999999998651             111110                     0 


Q ss_pred             ------------------CCCCccEEEcc--CCccccCCccccccCCccEEEcCCCCCcc------------------CC
Q 009079           89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (544)
Q Consensus        89 ------------------~~~~L~~L~l~--~~~l~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~  130 (544)
                                        ....++.+.+.  .|.++.+|..++++++|++|++++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                              00111111111  34555677777777777777777777776                  77


Q ss_pred             cccc--cCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCc-ccc--ccchhhcCc------cccceEEcCCCcCCC
Q 009079          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW------TMLTELIASKNLLNG  198 (544)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~------~~L~~L~l~~~~~~~  198 (544)
                      ..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. ++.  ++. .++.+      ++|++|++++|.++.
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~  319 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKT  319 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCc
Confidence            7776  7777777777777654 566677777777777777776 664  332 24443      777777777777777


Q ss_pred             Ccc--cccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCC-CCEEECCCCcCcccchhccc
Q 009079          199 MPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ  274 (544)
Q Consensus       199 ~~~--~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~  274 (544)
                      +|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++.....
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~  398 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA  398 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence            776  7777777777777777777 666 677777777777777777777776777777 77777777777665543322


Q ss_pred             c---cccEEEccCCCCCC-CCcccc-------CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcccccc
Q 009079          275 L---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (544)
Q Consensus       275 ~---~L~~L~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (544)
                      .   +|++|++++|.+.+ .|..+.       .+++                                            
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~--------------------------------------------  434 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------------------------------------  434 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC--------------------------------------------
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCC--------------------------------------------
Confidence            2   35666666665555 333333       3334                                            


Q ss_pred             chhhhhhhhhcccccceeeecCCCccCCCchhhcc-CCCccEEEcCCCCCCCCChhhhc--------CCCCcEEEccCCC
Q 009079          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNK  414 (544)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~  414 (544)
                                     ++.+++++|.+..+|..++. +++|++|++++|.++.+|.....        +++|+.|++++|.
T Consensus       435 ---------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          435 ---------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             ---------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             ---------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence                           44444445555555555443 67788888888888777654322        2378888888888


Q ss_pred             CCCCCHHHH-hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec------CCcccCCCCCCCCCCCccCceEeecCCcc
Q 009079          415 IKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL------SYNIASLPENPPFSSLPHLQELYLRRMQL  487 (544)
Q Consensus       415 l~~~~~~~l-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~ls~n~l  487 (544)
                      ++.++...+ ..+++|+.|++++|++..++. .+..+++|+.|++      ++|.+....+..++.+++|+.|++++|.+
T Consensus       500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            887665532 378888888888888887654 4667888888888      45667777777888888888888888888


Q ss_pred             cccCccccCCCCCCeeecCCCCCCCC
Q 009079          488 REAPTDILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       488 ~~i~~~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      +.+|..+.  ++|+.|++++|++.++
T Consensus       579 ~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          579 RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CccCHhHh--CcCCEEECcCCCCccc
Confidence            88887655  7888888888887744

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.8e-42  Score=353.32  Aligned_cols=452  Identities=19%  Similarity=0.215  Sum_probs=374.6

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcch-h
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~   86 (544)
                      +.+++||+++|.++.+++..+..            +++|++|++++|.+..++ .+|.++++|++|++++|.++.++. +
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRA------------CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSS------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             CCccEEECcCCccCccChhhhhc------------CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence            57999999999999887554444            688999999999999765 689999999999999999998866 5


Q ss_pred             hhCCCCccEEEccCCcccc--CCccccccCCccEEEcCCCC-CccCC-cccccCcCCCEEEcCCCcccc-CCccccCCCC
Q 009079           87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK  161 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~  161 (544)
                      +.++++|++|++++|.++.  .+..+..+++|++|++++|. +..++ ..++.+++|++|++++|.+.. .+..+..+++
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            9999999999999999985  46779999999999999998 66676 478899999999999999984 6778999999


Q ss_pred             ceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc----ccccCCCceeEEEccCCccc-----cCCcCCccCCCC
Q 009079          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL  232 (544)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L  232 (544)
                      |++|+++++.+..++...+..+++|++|++++|.+.+++    .....+++|+.|+++++.++     .++..+..+++|
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            999999999988877776778999999999999997652    22345788999999999877     234455778899


Q ss_pred             CEEEccCCcCCcCc-------hhhhCCCCCCEEECCCCcCcccchh-------cccccccEEEccCCCCCCCCccc-cCC
Q 009079          233 AEFYMGNNALSALP-------AELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGLPPEI-GKM  297 (544)
Q Consensus       233 ~~l~l~~~~~~~l~-------~~l~~~~~L~~L~l~~~~i~~~~~~-------~~~~~L~~L~l~~~~l~~l~~~l-~~~  297 (544)
                      +.+++++|.+..++       ..+..+++++.+.+.++.+......       ....+++.+++++|.+..+|..+ ..+
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l  333 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL  333 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence            99999999776442       2356788999999999887654321       12245999999999999998876 579


Q ss_pred             CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCch---
Q 009079          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS---  374 (544)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~---  374 (544)
                      ++|++|++++|.+......                                ........+.++.+++++|.+..++.   
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~--------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  381 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLK--------------------------------NSACKGAWPSLQTLVLSQNHLRSMQKTGE  381 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHH--------------------------------HHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred             ccccEEEccCCcccccccc--------------------------------chhhhhccccCcEEEccCCcccccccchh
Confidence            9999999999987542100                                00011223579999999999987763   


Q ss_pred             hhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (544)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~  454 (544)
                      .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++...   .++|++|++++|+++++.    ..+++|+
T Consensus       382 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          382 ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             HGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             hhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc----ccCChhc
Confidence            477789999999999999999998999999999999999998876432   379999999999998864    4789999


Q ss_pred             eEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCC
Q 009079          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      +|++++|+++.+..  ...+++|+.|++++|.++.++. .+..+++|+.|++++|++.+-
T Consensus       455 ~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          455 ELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             EEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             EEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            99999999997654  5678999999999999997754 477899999999999999854

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-41  Score=358.27  Aligned_cols=480  Identities=20%  Similarity=0.233  Sum_probs=357.2

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-hhhC
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~   89 (544)
                      .+.||++.+++.+|+.+.               +++++|++++|.|+.++. +|.++++|++|++++|+++.++. +|.+
T Consensus        34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            578999999999997664               359999999999998874 89999999999999999998865 7999


Q ss_pred             CCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceEE
Q 009079           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L  165 (544)
                      +++|++|++++|.++.+|. .|.++++|++|++++|+++.++. .++++++|++|++++|.+..  ++..+..+++|++|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999999999998875 58999999999999999998875 58999999999999999874  56778889999999


Q ss_pred             EecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccc--cCC----------------
Q 009079          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIP----------------  223 (544)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~l~----------------  223 (544)
                      ++++|.++.+....+..+..++    .++++.+.+..++........+..+++.++...  ..+                
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9999999988777676665543    577788877666544444445555665554322  000                


Q ss_pred             --------------cCCccCCCCCEEEccCCcCC----cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079          224 --------------SSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (544)
Q Consensus       224 --------------~~~~~~~~L~~l~l~~~~~~----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~  285 (544)
                                    ..+.....+....+..+...    .+...+....+++.+.+.++.+..+........++.+++.+|
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence                          01111122222222211111    122223344455555555555544444433344555555555


Q ss_pred             CCCCCCc--------------------cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccch
Q 009079          286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (544)
Q Consensus       286 ~l~~l~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (544)
                      .+..++.                    ....+++|+.+++++|.+.....                              
T Consensus       339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~------------------------------  388 (635)
T 4g8a_A          339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------------------------------  388 (635)
T ss_dssp             EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE------------------------------
T ss_pred             cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc------------------------------
Confidence            4443221                    12345555555555555432110                              


Q ss_pred             hhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC--ChhhhcCCCCcEEEccCCCCCCCCHHHH
Q 009079          346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL--PPELSSCASLQTLILSRNKIKDWPDAIL  423 (544)
Q Consensus       346 ~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~l~~~~l~~~~~~~l  423 (544)
                         ..........++.+++..+....++..+..+++++.+++..+.....  +..+..+++++.++++.|.+.......+
T Consensus       389 ---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          389 ---CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ---CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ---cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence               00111223567888888888887777788889999999999876553  2347889999999999999998888888


Q ss_pred             hCCCCCCEEECCCCCCC-cCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCC
Q 009079          424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLR  501 (544)
Q Consensus       424 ~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~  501 (544)
                      ..+++|+.|++++|.+. .+....+..+++|+.|++++|+++.+.+.+|+.+++|+.|+|++|+++.++. .+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            99999999999999854 4556679999999999999999999999999999999999999999998754 567899999


Q ss_pred             eeecCCCCCCCC-Ccccccc-eeeeEeccCCccccccccc
Q 009079          502 ILDLSQNSLQSI-PEVTYIF-VMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       502 ~L~l~~n~l~~l-~~~l~~~-~~L~~l~l~~n~~~~~~~~  539 (544)
                      .|++++|+++.+ |+.+..+ ++|+.|++++|++.++|+.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999999999976 6667777 6899999999999999874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.1e-42  Score=363.87  Aligned_cols=433  Identities=18%  Similarity=0.230  Sum_probs=271.8

Q ss_pred             cCccEEecccCccc-chhHhhcCCCCCCEEEc-CCCCCCCc-ch------------------------------------
Q 009079           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-PA------------------------------------   85 (544)
Q Consensus        45 ~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l-~~~~~~~l-~~------------------------------------   85 (544)
                      .+++.|+|+++.+. .+|..++++++|++|++ ++|.+... +-                                    
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888999999887 78889999999999999 66643211 00                                    


Q ss_pred             ----hh-----------hCCCCccEEEccC--CccccCCccccccCCccEEEcCCCCCcc------------------CC
Q 009079           86 ----AI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (544)
Q Consensus        86 ----~~-----------~~~~~L~~L~l~~--~~l~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~  130 (544)
                          .+           .....++.+.+..  |.++.+|..+..+++|+.|++++|.++.                  +|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                00           0111122222222  4444566666667777777777776665                  66


Q ss_pred             cccc--cCcCCCEEEcCCCccc-cCCccccCCCCceEEEecCCc-ccc--ccchhhcCc-------cccceEEcCCCcCC
Q 009079          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW-------TMLTELIASKNLLN  197 (544)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~~-------~~L~~L~l~~~~~~  197 (544)
                      ..++  ++++|++|++++|.+. .+|..+.++++|+.|++++|. ++.  ++.. +..+       ++|++|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence            6655  6666666666666543 556666666666666666665 553  2221 2322       36666666666666


Q ss_pred             CCcc--cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCC-CCEEECCCCcCcccchhccc
Q 009079          198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ  274 (544)
Q Consensus       198 ~~~~--~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~  274 (544)
                      .+|.  .+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.+..++     
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-----  635 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-----  635 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-----
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-----
Confidence            6665  5666666666666666666555 556666666666666666666655666665 666666666655444     


Q ss_pred             ccccEEEccCCCCCCCCccccCCC--CcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079          275 LRLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (544)
Q Consensus       275 ~~L~~L~l~~~~l~~l~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (544)
                                       ..+...+  +|+.|++++|.+..........                              ..
T Consensus       636 -----------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~------------------------------l~  668 (876)
T 4ecn_A          636 -----------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS------------------------------MD  668 (876)
T ss_dssp             -----------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC------------------------------TT
T ss_pred             -----------------hhhhccccCCCCEEECcCCcCCCccccchhh------------------------------hc
Confidence                             3333222  2445555554443211000000                              00


Q ss_pred             hcccccceeeecCCCccCCCchhhc-cCCCccEEEcCCCCCCCCChhhhc--------CCCCcEEEccCCCCCCCCHHHH
Q 009079          353 TRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDAIL  423 (544)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~l~~~~~~~l  423 (544)
                      ....+.++.+++++|.+..+|..++ .+++|+.|++++|.++.+|..+..        +++|+.|++++|.++.++...+
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence            0011245666666666666776665 567888888888888877765432        3388888888888887765532


Q ss_pred             -hCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC------cccCCCCCCCCCCCccCceEeecCCcccccCccccC
Q 009079          424 -TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY------NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR  496 (544)
Q Consensus       424 -~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~  496 (544)
                       ..+++|+.|++++|++..++. .+..+++|+.|++++      |.+....+..+..+++|+.|+|++|.++.+|..+. 
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~-  826 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT-  826 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred             hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc-
Confidence             378888888888888888654 366788888888866      67777778888888899999999998888887755 


Q ss_pred             CCCCCeeecCCCCCCCC-CcccccceeeeEeccCCcccc
Q 009079          497 LQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVD  534 (544)
Q Consensus       497 ~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~  534 (544)
                       ++|+.|++++|++..+ +..+.....+..+.+.+|...
T Consensus       827 -~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          827 -PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             -SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             -CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence             6889999999988865 333333334455555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8.1e-41  Score=360.56  Aligned_cols=467  Identities=20%  Similarity=0.227  Sum_probs=341.5

Q ss_pred             cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCc-cccC-CccccccCCccEEEcCCC
Q 009079           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSN  124 (544)
Q Consensus        48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~  124 (544)
                      +..+.+++.++.+|.   ..+++++|++++|.++.+ +.+|.++++|++|++++|. +..+ |..|..+++|++|++++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            467889999999987   458999999999999976 5689999999999999994 4466 677999999999999999


Q ss_pred             CCccC-CcccccCcCCCEEEcCCCcccc-CCcc--ccCCCCceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCC
Q 009079          125 QLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM  199 (544)
Q Consensus       125 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  199 (544)
                      .+..+ |..++.+++|++|++++|.+.. ++..  +..+++|++|++++|.++.+.. ..++++++|++|++++|.+..+
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            99966 6789999999999999999985 4444  8899999999999999987654 4689999999999999998654


Q ss_pred             -cccccCC--CceeEEEccCCcccc-CCcCCccCCC------CCEEEccCCcCC-cCchhhh------------------
Q 009079          200 -PETIGSL--SRLIRLDLHQNRILS-IPSSISGCCS------LAEFYMGNNALS-ALPAELG------------------  250 (544)
Q Consensus       200 -~~~l~~~--~~L~~L~l~~~~~~~-l~~~~~~~~~------L~~l~l~~~~~~-~l~~~l~------------------  250 (544)
                       +..+..+  ++|+.|++++|.+.. .+..+..+++      |+.|++++|.+. ..+..+.                  
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence             5666666  789999999998874 4555555554      999999999765 2222211                  


Q ss_pred             ------------------C--CCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCCC-CccccCCCCcceeccCC
Q 009079          251 ------------------K--LSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTG  307 (544)
Q Consensus       251 ------------------~--~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~  307 (544)
                                        +  .++|+.|++++|.+..+....+.  ..|+.|++++|.+..+ +..+..+++|++|++++
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence                              1  26788888888888776554333  3488888888888874 45678888888888888


Q ss_pred             CCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEc
Q 009079          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL  387 (544)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l  387 (544)
                      |.+..+....+.+...  ++.+.......         ...........++++.+++++|.+..++.    +++|+.+++
T Consensus       324 N~l~~~~~~~~~~l~~--L~~L~L~~N~i---------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l  388 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPK--VAYIDLQKNHI---------AIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFL  388 (844)
T ss_dssp             CCCSCCCSCSCSSCTT--CCEEECCSCCC---------CCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEE
T ss_pred             CCCCccCHHHhcCCCC--CCEEECCCCCC---------CccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhcc
Confidence            8876654433322100  00000000000         00000011122344555555555444333    444555555


Q ss_pred             CCCCCCCCChhhhcCCCCcEEEccCCCCCCCC-HHHHhCCCCCCEEECCCCCCCcCCC-CccCCCCCcceEecCCcccCC
Q 009079          388 SRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASL  465 (544)
Q Consensus       388 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~  465 (544)
                      ++|.++.+|..   ..+++.+++++|.++.+. ...+..+++|+.|++++|++...+. ..+..+++|+.|++++|.++.
T Consensus       389 ~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~  465 (844)
T 3j0a_A          389 SGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL  465 (844)
T ss_dssp             ESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred             CCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence            55555544432   345677777777777654 3345689999999999999987543 245678999999999998873


Q ss_pred             -----CCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccccc
Q 009079          466 -----PENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       466 -----~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                           ..+..|..+++|+.|+|++|.++.++.. +..+++|+.|++++|+++.+|+.... ++|+.|++++|.+.+.
T Consensus       466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCC
T ss_pred             ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCC
Confidence                 3446688999999999999999977554 67899999999999999988654333 8999999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=348.56  Aligned_cols=426  Identities=22%  Similarity=0.199  Sum_probs=338.7

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccch-hHhhcCCCCCCEEEcCCCCCCCcchhh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~   87 (544)
                      +.+++||+++|.+..+++..+..            +++|++|++++|.+..+ |..|.++++|++|++++|.++.+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            68999999999999998776665            57799999999999976 67999999999999999999999877 


Q ss_pred             hCCCCccEEEccCCcccc--CCccccccCCccEEEcCCCCCccCCcccccCcCC--CEEEcCCCcc--c-cCCccccCCC
Q 009079           88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~~~~~~~~~~  160 (544)
                       .+++|++|++++|.++.  +|..++.+++|++|++++|.++.  ..+..+++|  ++|++++|.+  . ..|..+..+.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence             89999999999999986  57889999999999999999876  357778888  9999999988  3 4455555554


Q ss_pred             -CceEEEecCCccc-cccchhhcCccccceEEcCCCc-------CCCCcccccCCCceeEEEccCCcccc-----CCcCC
Q 009079          161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (544)
Q Consensus       161 -~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~  226 (544)
                       +...++++++.+. .+....+..+++|+.+++++|.       +.+....+..+++|+.|+++++.+..     ++.. 
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-  243 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL-  243 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-
Confidence             2335666777655 4555668889999999999986       32222367888999999999887662     1111 


Q ss_pred             ccCCCCCEEEccCCcCC-cCchhh-----hCCCCCCEEECCCCcCcccchhccc-----ccccEEEccCCCCCCCCcccc
Q 009079          227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSGLPPEIG  295 (544)
Q Consensus       227 ~~~~~L~~l~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~i~~~~~~~~~-----~~L~~L~l~~~~l~~l~~~l~  295 (544)
                      ...++|+.+++++|.+. .+|..+     ..+++|+.+++++|.+ .++.....     .+++.|++++|.+...+. ..
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  321 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS  321 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence            12468999999999888 778777     7888999999988888 55522111     348888888887766431 25


Q ss_pred             CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh
Q 009079          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (544)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~  375 (544)
                      .+++|++|++++|.+..                                                          .+|..
T Consensus       322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~  343 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN  343 (520)
T ss_dssp             SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred             hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence            67777777777776642                                                          23445


Q ss_pred             hccCCCccEEEcCCCCCCC---CChhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079          376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (544)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~  451 (544)
                      +..+++|++|++++|.++.   +|..+..+++|++|++++|.++. ++...+..+++|++|++++|++++.....+.  +
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            5667899999999999986   44568899999999999999988 6666678889999999999999764333232  7


Q ss_pred             CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      +|+.|++++|+++.+.. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++++-.
T Consensus       422 ~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSIPK-QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             TCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCEEECCCCcccccch-hhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            99999999999986544 455899999999999999999887 778999999999999998543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-41  Score=348.35  Aligned_cols=449  Identities=20%  Similarity=0.227  Sum_probs=300.4

Q ss_pred             ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcc-hhhhCCCCccEEEccCCccccC-CccccccCCccEEEcCCC
Q 009079           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~  124 (544)
                      .++++++++.++.+|..+.  ++|++|++++|.++.++ .+|.++++|++|++++|.++.+ |..|..+++|++|++++|
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            3556666666665554443  55666666666665554 3555666666666666665544 344556666666666666


Q ss_pred             CCccCCcccccCcCCCEEEcCCCccccCC--ccccCCCCceEEEecCCccccccchhhcCcccc--ceEEcCCCcC--CC
Q 009079          125 QLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--NG  198 (544)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~  198 (544)
                      .++.+|..  .+++|++|++++|.+..++  ..+.++++|++|++++|.++...   +..++.|  ++|++++|.+  ..
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccc
Confidence            66655544  5566666666666655433  45566666666666666555422   3333444  6666666655  22


Q ss_pred             -CcccccCCC-ceeEEEccCCcccc-CC-cCCccCCCCCEEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCcc--
Q 009079          199 -MPETIGSLS-RLIRLDLHQNRILS-IP-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE--  267 (544)
Q Consensus       199 -~~~~l~~~~-~L~~L~l~~~~~~~-l~-~~~~~~~~L~~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~--  267 (544)
                       .|..+..++ ..-.+++++|.+.. ++ ..+..+++|+.+++++|...     .....+...++|+.+++.++.+..  
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence             233444332 11234555555442 11 12345566777777766422     223346677777777777665543  


Q ss_pred             ---cchhcccccccEEEccCCCCCC-CCccc-----cCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCc
Q 009079          268 ---YCVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED  338 (544)
Q Consensus       268 ---~~~~~~~~~L~~L~l~~~~l~~-l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (544)
                         ++......+|++|++++|.+.+ +|..+     ..++.|+.+++..+.+ .++..        ..            
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--------~~------------  324 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--------AL------------  324 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--------HH------------
T ss_pred             HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--------hh------------
Confidence               2222333468888888888774 66655     4555555555555443 21100        00            


Q ss_pred             cccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCC
Q 009079          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKD  417 (544)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~  417 (544)
                                ...  .....++.++++++.+...+. ...+++|++|++++|.+++ +|..+..+++|++|++++|.++.
T Consensus       325 ----------~~~--~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          325 ----------YSV--FAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN  391 (562)
T ss_dssp             ----------HHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred             ----------hhh--hccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence                      000  011368889999888765542 1457899999999999988 77789999999999999999998


Q ss_pred             CCH--HHHhCCCCCCEEECCCCCCCc-CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc
Q 009079          418 WPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI  494 (544)
Q Consensus       418 ~~~--~~l~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~  494 (544)
                      ++.  ..+..+++|++|++++|++.. ++...+..+++|+.|++++|.++...+..+.  ++|+.|++++|.++.+|..+
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~  469 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV  469 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh
Confidence            764  457899999999999999998 8877789999999999999998765544433  79999999999999999988


Q ss_pred             cCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCcccccccc
Q 009079          495 LRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       495 ~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      ..+++|+.|++++|+++.+|+. +..+++|+.|++++|++.+++.
T Consensus       470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            8999999999999999999876 8999999999999999998764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.2e-41  Score=351.88  Aligned_cols=413  Identities=19%  Similarity=0.265  Sum_probs=294.0

Q ss_pred             hhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCccc-------------chh-------------
Q 009079            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLK-------------   61 (544)
Q Consensus         9 ~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-------------~~~-------------   61 (544)
                      ..++.|+|+++.+. .+|+.+..             +++|++|++++|.+.             .+|             
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~  147 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK  147 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred             CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence            46889999999987 66654443             688999999999651             000             


Q ss_pred             --------Hhhc-------------------CCCCCCEEEcC--CCCCCCcchhhhCCCCccEEEccCCcccc-------
Q 009079           62 --------EDLR-------------------NLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (544)
Q Consensus        62 --------~~~~-------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~l~~-------  105 (544)
                              ..+.                   ....++.+.+.  +|.++.+|..+.++++|++|++++|.++.       
T Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence                    0000                   11122222222  35566788889999999999999998887       


Q ss_pred             -----------CCcccc--ccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCc-ccc--CCccccCC------CCc
Q 009079          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM  162 (544)
Q Consensus       106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~------~~L  162 (544)
                                 +|..+.  .+++|++|++++|.+. .+|..++++++|++|++++|. +..  +|..++.+      ++|
T Consensus       228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L  307 (636)
T 4eco_A          228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI  307 (636)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred             cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence                       888888  8999999999998865 778888899999999999997 774  77766665      889


Q ss_pred             eEEEecCCccccccc-hhhcCccccceEEcCCCcCC-CCcccccCCCceeEEEccCCccccCCcCCccCCC-CCEEEccC
Q 009079          163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (544)
Q Consensus       163 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~-L~~l~l~~  239 (544)
                      ++|++++|.++.++. ..++.+++|++|++++|.+. .+| .+..+++|+.|++++|.++.+|..+..+++ |+.|++++
T Consensus       308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            999999998887765 35888899999999999987 788 888888999999999999888888888988 99999999


Q ss_pred             CcCCcCchhhhCCC--CCCEEECCCCcCcccchhccc---------ccccEEEccCCCCCCCCcc-ccCCCCcceeccCC
Q 009079          240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTG  307 (544)
Q Consensus       240 ~~~~~l~~~l~~~~--~L~~L~l~~~~i~~~~~~~~~---------~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~  307 (544)
                      |.+..+|..+...+  +|+.|++++|.+.+..+..+.         .+|++|++++|.+..+|.. +..+++|++|++++
T Consensus       387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            99988887776654  899999999988765433222         3599999999999988776 45689999999999


Q ss_pred             CCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEc
Q 009079          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL  387 (544)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l  387 (544)
                      |.+..++...+.+..                                                   ..+..+++|+.|++
T Consensus       467 N~l~~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~L  495 (636)
T 4eco_A          467 NMLTEIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDL  495 (636)
T ss_dssp             SCCSBCCSSSSEETT---------------------------------------------------EECTTGGGCCEEEC
T ss_pred             CCCCCcCHHHhcccc---------------------------------------------------ccccccCCccEEEC
Confidence            998766543322100                                                   00111235666666


Q ss_pred             CCCCCCCCChhhh--cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEEC------CCCCCCcCCCCccCCCCCcceEecC
Q 009079          388 SRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL------DNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       388 ~~~~l~~l~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l------~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      ++|.++.+|..+.  .+++|++|++++|.++.++. .+..+++|++|++      ++|++....+..+..+++|+.|+++
T Consensus       496 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             cCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            6666666655554  56666666666666655432 2445666666666      3444444444456667777777777


Q ss_pred             CcccCCCCCCCCCCCccCceEeecCCccccc
Q 009079          460 YNIASLPENPPFSSLPHLQELYLRRMQLREA  490 (544)
Q Consensus       460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i  490 (544)
                      +|.+..+... +.  ++|+.|++++|.+..+
T Consensus       575 ~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          575 SNDIRKVNEK-IT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCCCBCCSC-CC--TTCCEEECCSCTTCEE
T ss_pred             CCcCCccCHh-Hh--CcCCEEECcCCCCccc
Confidence            7766544332 32  6777777777766543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.2e-41  Score=354.86  Aligned_cols=435  Identities=17%  Similarity=0.223  Sum_probs=312.0

Q ss_pred             hhcceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEec-ccCcccch-h------------------------
Q 009079            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL-K------------------------   61 (544)
Q Consensus         9 ~~~~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~l~~~-~------------------------   61 (544)
                      ..++.|+|+++.+. .+|+.+..             +++|++|++ ++|.+... +                        
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~  389 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK  389 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred             CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence            46899999999988 67755543             688999999 66654311 0                        


Q ss_pred             ----------------Hhh-----------cCCCCCCEEEcCC--CCCCCcchhhhCCCCccEEEccCCcccc-------
Q 009079           62 ----------------EDL-----------RNLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (544)
Q Consensus        62 ----------------~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~l~~-------  105 (544)
                                      ..+           .....++.+.+..  |.++.+|..+.++++|++|++++|.++.       
T Consensus       390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~  469 (876)
T 4ecn_A          390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW  469 (876)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence                            001           1112233333332  5556689999999999999999999998       


Q ss_pred             -----------CCcccc--ccCCccEEEcCCCCCc-cCCcccccCcCCCEEEcCCCc-ccc--CCcccc-------CCCC
Q 009079          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLA-------DCSK  161 (544)
Q Consensus       106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~-------~~~~  161 (544)
                                 +|..++  .+++|++|++++|.+. .+|..++++++|+.|++++|. +..  +|..+.       .+++
T Consensus       470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~  549 (876)
T 4ecn_A          470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK  549 (876)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred             cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence                       898877  9999999999999865 888889999999999999997 764  665444       4459


Q ss_pred             ceEEEecCCccccccc-hhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCC-CCEEEccC
Q 009079          162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (544)
Q Consensus       162 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~-L~~l~l~~  239 (544)
                      |++|++++|.++.++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.++.+|..+..+++ |+.|++++
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            9999999999997776 35899999999999999999888 899999999999999999999989999999 99999999


Q ss_pred             CcCCcCchhhhCCCC--CCEEECCCCcCcccchhc-------ccccccEEEccCCCCCCCCccc-cCCCCcceeccCCCC
Q 009079          240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP  309 (544)
Q Consensus       240 ~~~~~l~~~l~~~~~--L~~L~l~~~~i~~~~~~~-------~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~  309 (544)
                      |.+..+|..+...+.  |+.|++++|.+.+.....       ...+|+.|++++|.+..+|..+ ..+++|+.|++++|.
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            999999887776654  999999999987543221       1235999999999999988875 488999999999999


Q ss_pred             CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCC
Q 009079          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR  389 (544)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~  389 (544)
                      +..++...+.+..                                                   .....+++|+.|++++
T Consensus       709 L~~ip~~~~~~~~---------------------------------------------------~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          709 MTSIPENSLKPKD---------------------------------------------------GNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             CSCCCTTSSSCTT---------------------------------------------------SCCTTGGGCCEEECCS
T ss_pred             CCccChHHhcccc---------------------------------------------------ccccccCCccEEECCC
Confidence            8766544332210                                                   0011123556666666


Q ss_pred             CCCCCCChhhh--cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC------CCCCcCCCCccCCCCCcceEecCCc
Q 009079          390 NSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN------NPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       390 ~~l~~l~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      |.++.+|..+.  .+++|+.|++++|.++.++.. +..+++|+.|++++      |++....+..+..+++|+.|++++|
T Consensus       738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CCCccchHHhhhccCCCcCEEEeCCCCCCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence            66665555554  556666666666666554322 44556666666644      5555444445666777777777777


Q ss_pred             ccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCCeeecCCCCCCC
Q 009079          462 IASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQS  512 (544)
Q Consensus       462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~  512 (544)
                      .+..+... +.  ++|+.|+|++|.+..+. ..+.....+..+.+.+++...
T Consensus       817 ~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          817 DIRKVDEK-LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCCBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCCccCHh-hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            77444332 32  57777777777766442 223333345555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-39  Score=333.48  Aligned_cols=443  Identities=20%  Similarity=0.195  Sum_probs=341.7

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhh
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI   87 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~   87 (544)
                      ..+++|++++.++.+|..++               +++++|++++|.+..++ ..|.++++|++|++++|.++.+ |++|
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   96 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF   96 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred             CCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence            34799999999999997654               46999999999999776 5899999999999999999977 6689


Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCC--cccccCcCCCEEEcCCCccccCCccccCCCCc--e
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--S  163 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~  163 (544)
                      .++++|++|++++|.++.+|..  .+++|++|++++|.++.++  ..++++++|++|++++|.+...  .+..+++|  +
T Consensus        97 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~  172 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLS  172 (562)
T ss_dssp             TTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEE
T ss_pred             CCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceee
Confidence            9999999999999999999877  8999999999999999765  6899999999999999998753  44555666  9


Q ss_pred             EEEecCCcc--ccccchhhcCcc-ccceEEcCCCcCCC-C-cccccCCCceeEEEccCCccc-----cCCcCCccCCCCC
Q 009079          164 KLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-M-PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLA  233 (544)
Q Consensus       164 ~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~-~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~  233 (544)
                      +|++++|.+  +......+..+. ..-.+++++|.+.. + ...+..+++|+.+++++|...     .....+...+.++
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            999999988  655544455543 12255777777643 2 245677889999999987521     2223456677788


Q ss_pred             EEEccCCcCC-----cCchhhhCCCCCCEEECCCCcCc-ccchhccc---cc---ccEEEccCCCCCCCCc-ccc---CC
Q 009079          234 EFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---KM  297 (544)
Q Consensus       234 ~l~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~---~~---L~~L~l~~~~l~~l~~-~l~---~~  297 (544)
                      .+++.++.+.     .++..+ ..++|+.|++++|.+. .++...+.   ..   |+.+++..+.+ .+|. .+.   ..
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~  330 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHT
T ss_pred             EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhcc
Confidence            8887776655     233322 3458888999888877 45544321   23   44444444444 3442 121   23


Q ss_pred             CCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC-Cchhh
Q 009079          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEI  376 (544)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-i~~~~  376 (544)
                      .+++++++++|.+.....                                     ....+.++++++++|.+.. +|..+
T Consensus       331 ~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             CcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhhh
Confidence            578888888887643320                                     0123578888998888885 67778


Q ss_pred             ccCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCC
Q 009079          377 WEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM  452 (544)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~  452 (544)
                      ..+++|++|++++|.++.++   ..+..+++|++|++++|.++. ++...+..+++|++|++++|++++.....+.  ++
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence            88999999999999999865   457899999999999999998 7776788899999999999999764332222  79


Q ss_pred             cceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC
Q 009079          453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       453 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l  513 (544)
                      |+.|++++|+++.+....+ .+++|+.|++++|.++.+|.. +..+++|+.|++++|++.+-
T Consensus       452 L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          452 VKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            9999999999997766555 899999999999999999887 77899999999999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=9.7e-39  Score=318.57  Aligned_cols=407  Identities=26%  Similarity=0.300  Sum_probs=231.1

Q ss_pred             ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC-CcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~  122 (544)
                      .+.|++|+++++.++.+|.+++++++|++|++++|.+. .+|..+.++++|+.+++.+|.          ..++++|+++
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~   79 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN   79 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence            46788888888888888888888888888888887766 667777777666444433331          1345666666


Q ss_pred             CCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc
Q 009079          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (544)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (544)
                      +|.++.+|..   .++|++|++++|.+..+|..   .++|++|++++|.++.++..    .++|++|++++|.++++| .
T Consensus        80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~  148 (454)
T 1jl5_A           80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E  148 (454)
T ss_dssp             TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred             CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence            6666655542   25666666666666665532   25666666666666654321    156777777777776666 4


Q ss_pred             ccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEc
Q 009079          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (544)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l  282 (544)
                      +..+++|++|++++|.++.+|...   ++|++|++++|.+..+| .+..+++|+.|++++|.+++++...  .+|++|++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l  222 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP--LSLESIVA  222 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC--TTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc--CcccEEEC
Confidence            677777777777777777665433   46777777777777766 4677777777777777777655432  35777888


Q ss_pred             cCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceee
Q 009079          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (544)
Q Consensus       283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (544)
                      ++|.+..+|. +..+++|+++++++|.+..++..                                       .+.++.+
T Consensus       223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---------------------------------------~~~L~~L  262 (454)
T 1jl5_A          223 GNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---------------------------------------PPSLEAL  262 (454)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---------------------------------------CTTCCEE
T ss_pred             cCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---------------------------------------ccccCEE
Confidence            8877777764 77778888888888776544311                                       1356777


Q ss_pred             ecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCC-CCCCEEECCCCCCCc
Q 009079          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ  441 (544)
Q Consensus       363 ~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~i~~  441 (544)
                      ++++|.+..+|..   .++|+.|++++|.+++++..   .++|+.|++++|.++.+.     .+ ++|++|++++|++.+
T Consensus       263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence            7777777776653   36788888888888776532   367888888888877643     23 588888888888887


Q ss_pred             CCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc---cCccccCC-------------CCCCeeec
Q 009079          442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE---APTDILRL-------------QQLRILDL  505 (544)
Q Consensus       442 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~---i~~~~~~~-------------~~L~~L~l  505 (544)
                      ++..    +++|+.|++++|.++.+..    .+++|+.|++++|.++.   +|..+..+             ++|+.|++
T Consensus       332 lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l  403 (454)
T 1jl5_A          332 LPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV  403 (454)
T ss_dssp             CCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred             cccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence            6542    5788888888888876544    46788888888888775   45566555             78999999


Q ss_pred             CCCCCCCCCcccccceeeeEeccCCccccccccc
Q 009079          506 SQNSLQSIPEVTYIFVMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       506 ~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~~~~  539 (544)
                      ++|+++.+|..   ..+++.|++.+|.+.+...|
T Consensus       404 s~N~l~~~~~i---P~sl~~L~~~~~~~~~~~~~  434 (454)
T 1jl5_A          404 ETNPLREFPDI---PESVEDLRMNSERVVDPYEF  434 (454)
T ss_dssp             ----------------------------------
T ss_pred             CCCcCCccccc---hhhHhheeCcCcccCCcccc
Confidence            99999864432   13567778888888766554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-38  Score=333.05  Aligned_cols=463  Identities=22%  Similarity=0.264  Sum_probs=334.1

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-h
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~   86 (544)
                      ..+++|||++|.|+.+|+..|..            +++|++|++++|.|+.++. +|.++++|++|++++|+++.+|. +
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            47899999999999999877666            6779999999999998865 79999999999999999998875 7


Q ss_pred             hhCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCcc--CCcccccCcCCCEEEcCCCccccCC-ccccCCC--
Q 009079           87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCS--  160 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~--  160 (544)
                      |.++++|++|++++|.++.++.. |+.+++|++|++++|.++.  +|..++.+++|++|++++|.+..++ ..+..+.  
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            89999999999999999988764 8999999999999999984  5677889999999999999987553 2232222  


Q ss_pred             --CceEEEecCCccccccchhhcCccccceEEcCCCcCC-----------------------------------------
Q 009079          161 --KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----------------------------------------  197 (544)
Q Consensus       161 --~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  197 (544)
                        ....++++.+.++.+....+.. ..+..+++.++...                                         
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence              2335666666655544432222 12223333222110                                         


Q ss_pred             ------------------CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEE
Q 009079          198 ------------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD  259 (544)
Q Consensus       198 ------------------~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~  259 (544)
                                        .+...+.....++.+.+.++.+..+ ..+.....++.+++.++.+..++.  ..++.|+.++
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~  355 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLT  355 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEE
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCc--ccchhhhhcc
Confidence                              0001112222334444444433333 123444566666666666655533  3456677777


Q ss_pred             CCCCcCcccchhcccccccEEEccCCCCCC---CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCC
Q 009079          260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN  336 (544)
Q Consensus       260 l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (544)
                      +..+.+...........++.++++.|.+..   .+..+..+.+++.+++..+..........                  
T Consensus       356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~------------------  417 (635)
T 4g8a_A          356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL------------------  417 (635)
T ss_dssp             EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT------------------
T ss_pred             cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc------------------
Confidence            777666655554455668999999987765   44456678889999988887644332111                  


Q ss_pred             CccccccchhhhhhhhhcccccceeeecCCCccCCCc--hhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCC
Q 009079          337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN  413 (544)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~  413 (544)
                                        ....++.+++.++......  ..+..+.+++.++++.|.+..+ +..+..++.++.|++++|
T Consensus       418 ------------------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          418 ------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             ------------------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             ------------------ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence                              1245677777777655332  3455678899999999998874 445788899999999998


Q ss_pred             CC-CCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-C
Q 009079          414 KI-KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-P  491 (544)
Q Consensus       414 ~l-~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~  491 (544)
                      .+ ..+.+..|..+++|++|++++|++++++...|.++++|++|++++|+++.+.+..|+.+++|+.|+|++|.++.+ |
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            64 345556678899999999999999998888899999999999999999999999999999999999999999866 4


Q ss_pred             ccccCC-CCCCeeecCCCCCCCCCcccccceee
Q 009079          492 TDILRL-QQLRILDLSQNSLQSIPEVTYIFVML  523 (544)
Q Consensus       492 ~~~~~~-~~L~~L~l~~n~l~~l~~~l~~~~~L  523 (544)
                      ..+..+ ++|+.|++++|++.+-.+..+...++
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred             HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence            556666 68999999999988654443333333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.5e-38  Score=315.57  Aligned_cols=406  Identities=24%  Similarity=0.273  Sum_probs=258.9

Q ss_pred             hhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc-chhHhhcCCCCC-------------CEE
Q 009079            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TVL   73 (544)
Q Consensus         8 ~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L-------------~~L   73 (544)
                      .+.+++++++++.++.+|+.+..             +++|++|++++|.+. .+|..+.++++|             ++|
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL   76 (454)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred             cccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence            57899999999999999876543             688999999999887 788888888764             999


Q ss_pred             EcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC
Q 009079           74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (544)
Q Consensus        74 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  153 (544)
                      ++++|.++.+|..   .++|++|++++|.++.+|..   .++|++|++++|.++.++..   .++|++|++++|.+..+|
T Consensus        77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred             EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence            9999999988763   47899999999999988754   47899999999999887642   268999999999999988


Q ss_pred             ccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCC
Q 009079          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA  233 (544)
Q Consensus       154 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  233 (544)
                       .+..+++|++|++++|.++.++..    ..+|++|++++|.++.+| .+..+++|+.|++++|.++.+|...   ++|+
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~  218 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE  218 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred             -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence             589999999999999999876643    358999999999999887 6899999999999999998876543   5899


Q ss_pred             EEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccc
Q 009079          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (544)
Q Consensus       234 ~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~  313 (544)
                      .+++++|.+..+|. +..+++|+.|++++|.++.++..  ..+|++|++++|.+.++|..   .++|+++++++|.++.+
T Consensus       219 ~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred             EEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence            99999999998885 88999999999999999887653  35699999999999887764   37889999999887654


Q ss_pred             cccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCC
Q 009079          314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ  393 (544)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~  393 (544)
                      +.                                       .++.++.+++++|.+..++..   .++|++|++++|.++
T Consensus       293 ~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          293 SE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI  330 (454)
T ss_dssp             SC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCS
T ss_pred             cC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccc
Confidence            21                                       113556666666666544321   135666666666666


Q ss_pred             CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCC
Q 009079          394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS  473 (544)
Q Consensus       394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  473 (544)
                      ++|..   +++|++|++++|.++.++.    .+++|++|++++|++.+++..    ...+..|..  |......+   ..
T Consensus       331 ~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~~--n~~~~~i~---~~  394 (454)
T 1jl5_A          331 ELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESVEDLRM--NSHLAEVP---EL  394 (454)
T ss_dssp             CCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEEC--CC-----------
T ss_pred             ccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCC----hHHHHhhhh--cccccccc---cc
Confidence            65543   4566666666666665544    356666666666666553210    112222322  22211111   12


Q ss_pred             CccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079          474 LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       474 l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~  511 (544)
                      +++|+.|++++|.++.+|..   -++++.|.+.+|.+.
T Consensus       395 ~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             --------------------------------------
T ss_pred             cCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence            48899999999998854321   235788888888877

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.9e-36  Score=305.02  Aligned_cols=347  Identities=26%  Similarity=0.400  Sum_probs=193.6

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  125 (544)
                      +++.|+++++.+..++ .+..+++|++|++++|.+..++. +.++++|++|++++|.++.++. +..+++|++|++++|.
T Consensus        47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~  123 (466)
T 1o6v_A           47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ  123 (466)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             cccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence            4555555555554443 24445555555555555554443 4455555555555555544433 4445555555555554


Q ss_pred             CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (544)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (544)
                      ++.++. +                       ..+++|++|++++|.+..++.  +..+++|++|++. +.+..++ .+..
T Consensus       124 l~~~~~-~-----------------------~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~-~~~~  175 (466)
T 1o6v_A          124 ITDIDP-L-----------------------KNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLK-PLAN  175 (466)
T ss_dssp             CCCCGG-G-----------------------TTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCG-GGTT
T ss_pred             CCCChH-H-----------------------cCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCch-hhcc
Confidence            444432 4                       444444455544444444332  4444445554443 2222222 2555


Q ss_pred             CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (544)
Q Consensus       206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~  285 (544)
                      +++|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++......+|+.|++++|
T Consensus       176 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN  253 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             CCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC
Confidence            555666666655555442 24555566666666665555433 4555666666666666555443333334555555555


Q ss_pred             CCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecC
Q 009079          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (544)
Q Consensus       286 ~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (544)
                      .+.++++ +..+++|++|++++|.+..+                                                    
T Consensus       254 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~----------------------------------------------------  280 (466)
T 1o6v_A          254 QISNLAP-LSGLTKLTELKLGANQISNI----------------------------------------------------  280 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCSSCCCCC----------------------------------------------------
T ss_pred             ccccchh-hhcCCCCCEEECCCCccCcc----------------------------------------------------
Confidence            5555443 55566666666666654322                                                    


Q ss_pred             CCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCC
Q 009079          366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD  445 (544)
Q Consensus       366 ~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~  445 (544)
                             +. +..+++|+.|++++|.+++++. +..+++|+.|++++|.++++.+  +..+++|++|++++|++.+++  
T Consensus       281 -------~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--  347 (466)
T 1o6v_A          281 -------SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--  347 (466)
T ss_dssp             -------GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred             -------cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--
Confidence                   11 3345667777777777766554 6667777777777777776654  566777777777777777663  


Q ss_pred             ccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc
Q 009079          446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD  493 (544)
Q Consensus       446 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~  493 (544)
                      .+..+++|+.|++++|++++..+  +..+++|+.|++++|.++.+|..
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred             hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence            36677777777777777766654  66677777777777777665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.8e-36  Score=302.14  Aligned_cols=350  Identities=22%  Similarity=0.335  Sum_probs=274.4

Q ss_pred             CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecC
Q 009079           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  169 (544)
                      +++|+.|+++++.+..++. +..+++|++|++++|.++.++. ++++++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            4456666666666555542 5556666666666666666554 6666677777777776666655 67788888888888


Q ss_pred             CccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhh
Q 009079          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (544)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l  249 (544)
                      |.++.++.  +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|+.|++++|.+..++. +
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l  195 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDISV-L  195 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCChh-h
Confidence            88877765  788899999999999888775 478888999999863 444443 37788889999999888887754 7


Q ss_pred             hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (544)
                      ..+++|+.|++++|.+..+.......+|++|++++|.+..++ .+..+++|++|++++|.+..                 
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-----------------  257 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-----------------  257 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-----------------
T ss_pred             ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-----------------
Confidence            788888888888888887766555556888888888777653 46677777777777776533                 


Q ss_pred             hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEE
Q 009079          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI  409 (544)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~  409 (544)
                                                                ++. +..+++|++|++++|.++.++. +..+++|++|+
T Consensus       258 ------------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          258 ------------------------------------------LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLE  293 (466)
T ss_dssp             ------------------------------------------CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             ------------------------------------------chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEE
Confidence                                                      222 4457899999999999999876 88999999999


Q ss_pred             ccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079          410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE  489 (544)
Q Consensus       410 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  489 (544)
                      +++|.++++.+  +..+++|+.|++++|++.++..  +..+++|+.|++++|.++.+  ..++.+++|+.|++++|.++.
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            99999998766  7899999999999999998765  77899999999999999887  468999999999999999997


Q ss_pred             cCccccCCCCCCeeecCCCCCCCCCccc
Q 009079          490 APTDILRLQQLRILDLSQNSLQSIPEVT  517 (544)
Q Consensus       490 i~~~~~~~~~L~~L~l~~n~l~~l~~~l  517 (544)
                      ++. +..+++|+.|++++|+++.+|..+
T Consensus       368 ~~~-~~~l~~L~~L~l~~n~~~~~p~~~  394 (466)
T 1o6v_A          368 LTP-LANLTRITQLGLNDQAWTNAPVNY  394 (466)
T ss_dssp             CGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred             cch-hhcCCCCCEEeccCCcccCCchhh
Confidence            765 788999999999999999876543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-35  Score=298.04  Aligned_cols=381  Identities=22%  Similarity=0.254  Sum_probs=245.4

Q ss_pred             ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCc-chhhhCCCCccEEEccCCccc-cC-CccccccCCccEEEcCC
Q 009079           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS  123 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~-~l-~~~~~~~~~L~~L~l~~  123 (544)
                      -+.++.++..++.+|. +  .++|++|++++|.++.+ +.++.++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4567888888888876 3  27889999998888866 567888889999999888776 44 44588888888888888


Q ss_pred             CCCccC-CcccccCcCCCEEEcCCCcccc-CCcc--ccCCCCceEEEecCCccccccch-hhcCccccceEEcCCCcCCC
Q 009079          124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG  198 (544)
Q Consensus       124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  198 (544)
                      |.++.+ |..++.+++|++|++++|.+.. .+..  +..+++|++|++++|.++.+... .+..+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            888755 5567778888888888887764 2222  66677777777777777665433 35666666666666666654


Q ss_pred             C-cccccCC--CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc-
Q 009079          199 M-PETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-  274 (544)
Q Consensus       199 ~-~~~l~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-  274 (544)
                      + +..+..+  .+|+.++++++.+..++......              .....+..+++|++|++++|.+.......+. 
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence            3 2333333  45666666665555443211000              0000122345555566655555432221111 


Q ss_pred             ----ccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhh
Q 009079          275 ----LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (544)
Q Consensus       275 ----~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (544)
                          .+++.+++++|...........++...                                                 
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-------------------------------------------------  265 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-------------------------------------------------  265 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCC-------------------------------------------------
T ss_pred             cccccceeeEeeccccccccccchhhhccCc-------------------------------------------------
Confidence                224444444443222100000000000                                                 


Q ss_pred             hhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCC
Q 009079          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (544)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L  429 (544)
                                          .........++|+.+++++|.++. .+..+..+++|++|++++|.++++.+..|..+++|
T Consensus       266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                                000000113567888888887776 45567778888888888888887776667788888


Q ss_pred             CEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCC
Q 009079          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQN  508 (544)
Q Consensus       430 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n  508 (544)
                      ++|++++|++.++....+..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            8888888888777666777888888888888888877777788888888888888888877654 356888888888888


Q ss_pred             CCCCC
Q 009079          509 SLQSI  513 (544)
Q Consensus       509 ~l~~l  513 (544)
                      +++.-
T Consensus       406 ~l~~~  410 (455)
T 3v47_A          406 PWDCS  410 (455)
T ss_dssp             CBCCC
T ss_pred             CcccC
Confidence            88743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.4e-36  Score=299.97  Aligned_cols=137  Identities=26%  Similarity=0.337  Sum_probs=127.0

Q ss_pred             CCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEe
Q 009079          402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY  481 (544)
Q Consensus       402 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  481 (544)
                      .++|+.|++++|.+++..+..+..+++|++|++++|++.++....+..+++|++|++++|.++.+.+..|+.+++|+.|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            47899999999999998888889999999999999999998888899999999999999999999889999999999999


Q ss_pred             ecCCccccc-CccccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCcccccccc
Q 009079          482 LRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       482 ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      +++|.++.+ |..+..+++|++|++++|+++.+|. .+..+++|+.|++++|++.+++.
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999966 6778889999999999999998864 56899999999999999998864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-34  Score=288.57  Aligned_cols=222  Identities=23%  Similarity=0.302  Sum_probs=149.3

Q ss_pred             ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      +++|++|+++++.++.+| .+..+++|++|++++|.++.++  +..+++|++|++++|.++.++  +..+++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            456777777777777665 5667777777777777777664  666777777777777777664  66677777777777


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCc-cccccchhhcCccccceEEcCCCcCCCCccc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (544)
                      |.++.++  ++.+++|++|++++|.+..++  +..+++|++|++++|. +..+   .+..+++|++|++++|.++.+|  
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--  186 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--  186 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--
T ss_pred             CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--
Confidence            7777664  666777777777777777653  5667777777777763 3333   2566677777777777777665  


Q ss_pred             ccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEc
Q 009079          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (544)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l  282 (544)
                      +..+++|+.|++++|.++.+  .+..+++|+.|++++|.+..+|  +..+++|+.|++++|.+++++... ...|+.+++
T Consensus       187 l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~-l~~L~~L~l  261 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST-LSKLTTLHC  261 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTT-CTTCCEEEC
T ss_pred             cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHH-CCCCCEEec
Confidence            66677777777777777766  3666777777777777777765  566777777777777766654222 223444444


Q ss_pred             cC
Q 009079          283 SN  284 (544)
Q Consensus       283 ~~  284 (544)
                      +.
T Consensus       262 ~~  263 (457)
T 3bz5_A          262 IQ  263 (457)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.1e-35  Score=293.57  Aligned_cols=231  Identities=25%  Similarity=0.311  Sum_probs=202.8

Q ss_pred             HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCE
Q 009079           62 EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSD  141 (544)
Q Consensus        62 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  141 (544)
                      ..+.++++|++|++++|.++.+| .+..+++|++|++++|.++.++  +..+++|++|++++|.++.++  ++++++|++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~  110 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY  110 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred             cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence            36778899999999999999887 7899999999999999999885  889999999999999999885  889999999


Q ss_pred             EEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCc-CCCCcccccCCCceeEEEccCCccc
Q 009079          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRIL  220 (544)
Q Consensus       142 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~  220 (544)
                      |++++|.+..++  +..+++|++|++++|.++.++   ++.+++|++|++++|. +..+  .+..+++|+.|++++|.++
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence            999999999875  889999999999999999874   7889999999999994 4555  4788899999999999999


Q ss_pred             cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCc
Q 009079          221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL  300 (544)
Q Consensus       221 ~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L  300 (544)
                      .++  +..+++|+.+++++|.+..++  +..+++|+.|++++|.+++++ .....+|+.|++++|.+.+++  +..+++|
T Consensus       184 ~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~--~~~l~~L  256 (457)
T 3bz5_A          184 ELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD--VSTLSKL  256 (457)
T ss_dssp             CCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred             eec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC--HHHCCCC
Confidence            986  788999999999999999874  788999999999999999987 333456999999999998876  5677888


Q ss_pred             ceeccCCCCCc
Q 009079          301 RKLLLTGNPLR  311 (544)
Q Consensus       301 ~~L~l~~~~~~  311 (544)
                      +.++++++.++
T Consensus       257 ~~L~l~~n~L~  267 (457)
T 3bz5_A          257 TTLHCIQTDLL  267 (457)
T ss_dssp             CEEECTTCCCS
T ss_pred             CEEeccCCCCC
Confidence            88888777553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-32  Score=266.31  Aligned_cols=307  Identities=19%  Similarity=0.334  Sum_probs=180.2

Q ss_pred             hcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEE
Q 009079           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (544)
Q Consensus        64 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (544)
                      +..+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence            445677778888777777765 36677777777777777776655 677777777777777776654 466666666666


Q ss_pred             cCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC
Q 009079          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (544)
Q Consensus       144 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~  223 (544)
                      +++|.+..++. +..+++|++|++++|....                        ....+..+++|++|++++|.+..++
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~  171 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLS------------------------DLSPLSNMTGLNYLTVTESKVKDVT  171 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCC------------------------CCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcc------------------------cccchhhCCCCcEEEecCCCcCCch
Confidence            66666665544 5555566666665553221                        1122444445555555555444432


Q ss_pred             cCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCccee
Q 009079          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL  303 (544)
Q Consensus       224 ~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L  303 (544)
                      . +..+++|+.+++++|.+..++. +..+++|+.+++++|.+..+.......+|++|++++|.+..++. +..+++|+++
T Consensus       172 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          172 P-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL  248 (347)
T ss_dssp             G-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             h-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence            2 4445555555555555554433 45555555555555555544332222334555555555544444 5556666666


Q ss_pred             ccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCcc
Q 009079          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (544)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~  383 (544)
                      ++++|.+..+                                                            +.+..+++|+
T Consensus       249 ~l~~n~l~~~------------------------------------------------------------~~~~~l~~L~  268 (347)
T 4fmz_A          249 EIGTNQISDI------------------------------------------------------------NAVKDLTKLK  268 (347)
T ss_dssp             ECCSSCCCCC------------------------------------------------------------GGGTTCTTCC
T ss_pred             ECCCCccCCC------------------------------------------------------------hhHhcCCCcC
Confidence            6666654321                                                            1233355667


Q ss_pred             EEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCccc
Q 009079          384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (544)
Q Consensus       384 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l  463 (544)
                      .|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|++++|++++++.  +..+++|++|++++|.+
T Consensus       269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            7777777666653 46666777777777777766666666777777777777777666544  55666666666666654


Q ss_pred             C
Q 009079          464 S  464 (544)
Q Consensus       464 ~  464 (544)
                      +
T Consensus       346 ~  346 (347)
T 4fmz_A          346 K  346 (347)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-32  Score=265.75  Aligned_cols=305  Identities=20%  Similarity=0.340  Sum_probs=187.6

Q ss_pred             ccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEc
Q 009079          112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA  191 (544)
Q Consensus       112 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  191 (544)
                      .+++|+.|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++  .+..+++|++|++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l  117 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYL  117 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEEC
Confidence            3344444444444444332 23444444444444444444433 444555555555555555443  2555556666666


Q ss_pred             CCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchh
Q 009079          192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (544)
Q Consensus       192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~  271 (544)
                      ++|.+..++. +..+++|+.|++++|........+..+++|+.+++++|.+..++. +..+++|++|++++|.+.+++  
T Consensus       118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--  193 (347)
T 4fmz_A          118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS--  193 (347)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG--
T ss_pred             cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc--
Confidence            6666655544 666777777777777544444446666777777777776666544 566666666666666555433  


Q ss_pred             cccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhh
Q 009079          272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (544)
Q Consensus       272 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (544)
                                          . +..+++|+.+++++|.+..+.                                     
T Consensus       194 --------------------~-~~~l~~L~~L~l~~n~l~~~~-------------------------------------  215 (347)
T 4fmz_A          194 --------------------P-LASLTSLHYFTAYVNQITDIT-------------------------------------  215 (347)
T ss_dssp             --------------------G-GGGCTTCCEEECCSSCCCCCG-------------------------------------
T ss_pred             --------------------c-ccCCCccceeecccCCCCCCc-------------------------------------
Confidence                                2 455566666666665543221                                     


Q ss_pred             hhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCE
Q 009079          352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC  431 (544)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  431 (544)
                                            . +..+++|++|++++|.++.++. +..+++|++|++++|.+++++  .+..+++|++
T Consensus       216 ----------------------~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~  269 (347)
T 4fmz_A          216 ----------------------P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN--AVKDLTKLKM  269 (347)
T ss_dssp             ----------------------G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             ----------------------h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh--hHhcCCCcCE
Confidence                                  1 2334567777777777766655 667777777777777777653  3567777777


Q ss_pred             EECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079          432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       432 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~  511 (544)
                      |++++|++.+++  .+..+++|+.|++++|.++...+..++.+++|+.|++++|.++.++. +..+++|+.|++++|+++
T Consensus       270 L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          270 LNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             EEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            777777777763  36677778888888887777776777778888888888888877655 677888888888888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=277.84  Aligned_cols=312  Identities=21%  Similarity=0.291  Sum_probs=163.9

Q ss_pred             cEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC-ccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCc
Q 009079          117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (544)
Q Consensus       117 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (544)
                      +.++.++++++.+|..+.  ++++.|++++|.+..++ ..+.++++|++|++++|.++.+....|.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            456666667777765442  46777777777776553 456667777777777777666665566666667777776666


Q ss_pred             CCCCcc-cccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhc
Q 009079          196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA  272 (544)
Q Consensus       196 ~~~~~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~  272 (544)
                      +..++. .+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++...
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  171 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA  171 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence            666653 356666666666666666643 34556666666666666666543 334556666666666666555544322


Q ss_pred             cc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhh
Q 009079          273 CQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI  349 (544)
Q Consensus       273 ~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (544)
                      +.  .+|+.|++++|.+..++. .+..+++|++|++++|...                                      
T Consensus       172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~--------------------------------------  213 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL--------------------------------------  213 (477)
T ss_dssp             HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC--------------------------------------
T ss_pred             hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc--------------------------------------
Confidence            11  224444444444443221 2333444444444333211                                      


Q ss_pred             hhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCC
Q 009079          350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSS  428 (544)
Q Consensus       350 ~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~  428 (544)
                                          ..++.......+|++|++++|.++.+|. .+..+++|+.|++++|.++.+....|..+++
T Consensus       214 --------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          214 --------------------DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             --------------------CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             --------------------cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence                                0111222222344455555554444442 2444445555555555444444444444455


Q ss_pred             CCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       429 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      |+.|++++|++..+....|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555444444444444445555555555444444444444445555555544443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.8e-32  Score=268.47  Aligned_cols=305  Identities=22%  Similarity=0.265  Sum_probs=158.8

Q ss_pred             CcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEE
Q 009079          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD  213 (544)
Q Consensus       136 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~  213 (544)
                      +++++.++++++.+..+|.. +..+++|++|+++++.++.++...+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666666655543 355566666666666666655555666666666666666665543 3455666666666


Q ss_pred             ccCCccccCCcC-CccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCC
Q 009079          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (544)
Q Consensus       214 l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~  291 (544)
                      +++|.++.+|.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++                      
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------  181 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  181 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence            666666655544 35556666666666665544 233555566666666655555432                      


Q ss_pred             ccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC
Q 009079          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (544)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (544)
                        +..+++|+.+++++|.+..++                                        .+..+++++++++.+..
T Consensus       182 --~~~l~~L~~L~l~~n~l~~~~----------------------------------------~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          182 --LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSINV  219 (390)
T ss_dssp             --GGGCTTCSEEECCSSCCSEEE----------------------------------------CCSSCSEEECCSSCCCE
T ss_pred             --cccccccceeecccccccccC----------------------------------------CCCcceEEECCCCeeee
Confidence              233445555555555443211                                        00122222222222222


Q ss_pred             CchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (544)
Q Consensus       372 i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~  451 (544)
                      ++...  .++|+.|++++|.+++. ..+..+++|++|++++|.++++.+..|..+++|++|++++|++..++.. +..++
T Consensus       220 ~~~~~--~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~  295 (390)
T 3o6n_A          220 VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP  295 (390)
T ss_dssp             EECCC--CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCT
T ss_pred             ccccc--cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCC
Confidence            22211  23555555555555554 2455555555555555555555444455555555555555555554332 34455


Q ss_pred             CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~  511 (544)
                      +|+.|++++|.+..+. ..+..+++|+.|++++|.++.++  +..+++|+.|++++|++.
T Consensus       296 ~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          296 TLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred             CCCEEECCCCcceecC-ccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence            5555555555554332 22344455555555555555443  344555555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-31  Score=269.09  Aligned_cols=309  Identities=21%  Similarity=0.273  Sum_probs=145.2

Q ss_pred             EEEccCCccccCCccccccCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccccC-CccccCCCCceEEEecCCcc
Q 009079           95 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL  172 (544)
Q Consensus        95 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  172 (544)
                      .++.+++.++.+|..+.  ++++.|++++|.++.++ ..+.++++|++|++++|.+..+ +..+.++++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            44444444444444332  34555555555555432 3444555555555555555433 33445555555555555555


Q ss_pred             ccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcCch-hh
Q 009079          173 TVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-EL  249 (544)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l~~-~l  249 (544)
                      +.++...+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  172 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL  172 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence            555444455555555555555555433 23444555555555555554433 2344445555555555555554432 34


Q ss_pred             hCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCC-CCccccCCCCcceeccCCCCCccccccccCCCchHHH
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL  326 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  326 (544)
                      ..+++|+.|++++|.+..++...+.  .+|++|++++|...+ ++.......+|++|++++|.+..              
T Consensus       173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------  238 (477)
T 2id5_A          173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--------------  238 (477)
T ss_dssp             TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--------------
T ss_pred             cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--------------
Confidence            4555555555555555444332222  225555555543322 33322223344444444433321              


Q ss_pred             HHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCCCCCh-hhhcCCC
Q 009079          327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELPP-ELSSCAS  404 (544)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~  404 (544)
                                                                   ++ ..+..+++|+.|++++|.++.++. .+..+++
T Consensus       239 ---------------------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (477)
T 2id5_A          239 ---------------------------------------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR  273 (477)
T ss_dssp             ---------------------------------------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred             ---------------------------------------------cCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence                                                         11 122234455555555555544332 2444555


Q ss_pred             CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccC
Q 009079          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (544)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~  464 (544)
                      |++|++++|.++.+.+..|..+++|+.|++++|+++.++...|..+++|+.|++++|.+.
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            555555555555544444455555555555555555554444455555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=5.9e-31  Score=259.01  Aligned_cols=150  Identities=19%  Similarity=0.287  Sum_probs=64.4

Q ss_pred             CCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEc
Q 009079           68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA  144 (544)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l  144 (544)
                      +++++++++++.++.+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .++.+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            444444444444444433 23444444444444444443322 34444444444444444443322 2344444444444


Q ss_pred             CCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCcc
Q 009079          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI  219 (544)
Q Consensus       145 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  219 (544)
                      ++|.+..++.. +..+++|++|++++|.++.+....+..+++|++|++++|.++.++  +..+++|+.+++++|.+
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccc
Confidence            44444444333 234444444444444444444333444444444444444443331  23334444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=4.9e-31  Score=273.57  Aligned_cols=305  Identities=22%  Similarity=0.236  Sum_probs=153.4

Q ss_pred             CcCCCEEEcCCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-ccccCCCceeEEE
Q 009079          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD  213 (544)
Q Consensus       136 ~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~  213 (544)
                      +.+++.++++++.+..+|.. +..+++|+.|++++|.++.++...+..+++|++|++++|.+..++ ..++.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45566666666666655543 344566666666666666555555666666666666666665543 2345566666666


Q ss_pred             ccCCccccCCcC-CccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCC
Q 009079          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (544)
Q Consensus       214 l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~  291 (544)
                      +++|.++.+|.. +..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.++                      
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence            666666555443 35555666666666655544 234555555665555555554432                      


Q ss_pred             ccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCC
Q 009079          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (544)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (544)
                        +..+++|+.+++++|.+..++                                                         
T Consensus       188 --~~~l~~L~~L~l~~n~l~~l~---------------------------------------------------------  208 (597)
T 3oja_B          188 --LSLIPSLFHANVSYNLLSTLA---------------------------------------------------------  208 (597)
T ss_dssp             --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred             --hhhhhhhhhhhcccCcccccc---------------------------------------------------------
Confidence              233445555555555443211                                                         


Q ss_pred             CchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCC
Q 009079          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (544)
Q Consensus       372 i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~  451 (544)
                            ..+.|+.|++++|.++.++..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.++....+..++
T Consensus       209 ------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          209 ------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             ------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence                  0123444444444443332211  13444444444444432  1234444444444444444444333444444


Q ss_pred             CcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCc
Q 009079          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTE  531 (544)
Q Consensus       452 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n  531 (544)
                      +|+.|++++|.++.+. ..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+++.++  +..+++|+.|++++|
T Consensus       279 ~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          279 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             SCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence            4455555444444432 2233445555555555555555555545555555555555555443  344555555555555


Q ss_pred             ccc
Q 009079          532 LVD  534 (544)
Q Consensus       532 ~~~  534 (544)
                      ++.
T Consensus       356 ~~~  358 (597)
T 3oja_B          356 DWD  358 (597)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.9e-29  Score=242.21  Aligned_cols=288  Identities=22%  Similarity=0.255  Sum_probs=221.5

Q ss_pred             ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEEC
Q 009079          183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL  260 (544)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l  260 (544)
                      ...++.++++++.++.+|..+.  +.++.|++++|.++.++. .+..+++|++|++++|.+..+ |..+..+++|++|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            3467788888888777776553  578888888888887755 678888888888888888866 677888889999999


Q ss_pred             CCCcCcccchhcccccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079          261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (544)
Q Consensus       261 ~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (544)
                      ++|.++.++.... ..|++|++++|.+..++. .+..+++|+.+++++|.+...+                         
T Consensus       108 s~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------  161 (330)
T 1xku_A          108 SKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------------  161 (330)
T ss_dssp             CSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------------
T ss_pred             CCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-------------------------
Confidence            9988887776554 568999999998888655 4788999999999988764311                         


Q ss_pred             ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC
Q 009079          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP  419 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~  419 (544)
                                                     ..+..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++.+.
T Consensus       162 -------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          162 -------------------------------IENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD  208 (330)
T ss_dssp             -------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred             -------------------------------cChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence                                           122344556788888888888888776543  78888888888888877


Q ss_pred             HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcccc----
Q 009079          420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL----  495 (544)
Q Consensus       420 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~----  495 (544)
                      +..+..+++|++|++++|++.+++...+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++....    
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~  287 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG  287 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence            77788888888888888888887776788888888888888888755 3457788888888888888887754432    


Q ss_pred             ---CCCCCCeeecCCCCCCC--C-CcccccceeeeEeccCCcc
Q 009079          496 ---RLQQLRILDLSQNSLQS--I-PEVTYIFVMLQKKSINTEL  532 (544)
Q Consensus       496 ---~~~~L~~L~l~~n~l~~--l-~~~l~~~~~L~~l~l~~n~  532 (544)
                         ..+.++.|++++|++..  + |..+..++.++.+++++|+
T Consensus       288 ~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence               24788899999998873  4 5678888999999998884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-29  Score=263.57  Aligned_cols=235  Identities=20%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             CCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccccCCc-cccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEc
Q 009079           68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA  144 (544)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l  144 (544)
                      .+++.++++++.+..+|. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .++.+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            445555555555554443 23445555555555555544432 34455555555555555544432 2344445555555


Q ss_pred             CCCccccCCcc-ccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC
Q 009079          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (544)
Q Consensus       145 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~  223 (544)
                      ++|.+..+|.. +..+++|++|++++|.++.+....+..+++|++|++++|.+..++  +..+++|+.+++++|.++.+ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l-  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL-  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence            55544444433 244455555555555444444444444444444444444444332  23334444444444443322 


Q ss_pred             cCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCC-CccccCCCCcce
Q 009079          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK  302 (544)
Q Consensus       224 ~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~  302 (544)
                         ...+.|+.|++++|.+..++..+  .++|+.|++++|.+++.+.......|+.|++++|.+.++ |..+..+++|+.
T Consensus       208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence               11223444444444444332211  133444444444433322222222233333333333331 233444444444


Q ss_pred             eccCCCCC
Q 009079          303 LLLTGNPL  310 (544)
Q Consensus       303 L~l~~~~~  310 (544)
                      |++++|.+
T Consensus       283 L~Ls~N~l  290 (597)
T 3oja_B          283 LYISNNRL  290 (597)
T ss_dssp             EECTTSCC
T ss_pred             EECCCCCC
Confidence            44444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.6e-29  Score=238.99  Aligned_cols=281  Identities=21%  Similarity=0.292  Sum_probs=236.4

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA   86 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~   86 (544)
                      ..++.++++++.++.+|..+.               ++++.|+++++.++.++. .+.++++|++|++++|.++.+ |.+
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   95 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence            368899999999998886543               469999999999997765 789999999999999999977 778


Q ss_pred             hhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc---cCCccccCCCCc
Q 009079           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKM  162 (544)
Q Consensus        87 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L  162 (544)
                      +..+++|++|++++|.++.+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.+.   ..+..+..+++|
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            9999999999999999998887654  789999999999997764 5788999999999999886   345668889999


Q ss_pred             eEEEecCCccccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCC
Q 009079          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN  240 (544)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~  240 (544)
                      ++|++++|.++.++...+   ++|++|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|
T Consensus       174 ~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          174 SYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            999999999988776533   7899999999999876 5788999999999999999987654 6888999999999999


Q ss_pred             cCCcCchhhhCCCCCCEEECCCCcCcccchhccc--------ccccEEEccCCCCCC---CCccccCCCCcceeccCCCC
Q 009079          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP  309 (544)
Q Consensus       241 ~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~  309 (544)
                      .+..+|..+..+++|+.|++++|.++.++...+.        ..++.+++++|.+..   .|..+..+..++.+++++|+
T Consensus       251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            9999999899999999999999999988766553        348899999998764   34567888899999998873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.3e-28  Score=236.57  Aligned_cols=286  Identities=21%  Similarity=0.349  Sum_probs=178.6

Q ss_pred             CCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccC
Q 009079          138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQ  216 (544)
Q Consensus       138 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~  216 (544)
                      +++.++++++.+..+|..+.  ++|+.|++++|.++.+....+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            46666666666666665443  5677777777777766665677777777777777777655 56677777788888887


Q ss_pred             CccccCCcCCccCCCCCEEEccCCcCCcCch-hhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCcccc
Q 009079          217 NRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG  295 (544)
Q Consensus       217 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~  295 (544)
                      |.++.+|..+.  ++|++|++++|.+..++. .+..+++|+.|++++|.++....                   .+..+.
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~  170 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------------EPGAFD  170 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------------CTTSSC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-------------------Cccccc
Confidence            77777766554  678888888888776654 46778888888888777653211                   122233


Q ss_pred             CCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchh
Q 009079          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (544)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~  375 (544)
                      .+ +|+++++++|.+..++.                                                           .
T Consensus       171 ~l-~L~~L~l~~n~l~~l~~-----------------------------------------------------------~  190 (332)
T 2ft3_A          171 GL-KLNYLRISEAKLTGIPK-----------------------------------------------------------D  190 (332)
T ss_dssp             SC-CCSCCBCCSSBCSSCCS-----------------------------------------------------------S
T ss_pred             CC-ccCEEECcCCCCCccCc-----------------------------------------------------------c
Confidence            33 66666666665543221                                                           1


Q ss_pred             hccCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079          376 IWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (544)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~  454 (544)
                      +  .++|++|++++|.++.++ ..+..+++|++|++++|.++.+.+..+..+++|++|++++|++..++.. +..+++|+
T Consensus       191 ~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~  267 (332)
T 2ft3_A          191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQ  267 (332)
T ss_dssp             S--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCC
T ss_pred             c--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCC
Confidence            1  134555555655555543 3455666666666666666666555566666666666666666655543 55666666


Q ss_pred             eEecCCcccCCCCCCCCCC------CccCceEeecCCccc--cc-CccccCCCCCCeeecCCCC
Q 009079          455 ILDLSYNIASLPENPPFSS------LPHLQELYLRRMQLR--EA-PTDILRLQQLRILDLSQNS  509 (544)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~------l~~L~~L~ls~n~l~--~i-~~~~~~~~~L~~L~l~~n~  509 (544)
                      .|++++|.++.+....|..      .+.|+.|++++|.+.  .+ |..+..++.|+.+++++|+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6666666666666555544      256777777777665  33 4445567777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.9e-31  Score=266.80  Aligned_cols=290  Identities=18%  Similarity=0.212  Sum_probs=208.3

Q ss_pred             hhcceeEcCCCcccccchH-HhhcccccCCCCceeeecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCCC
Q 009079            9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~   82 (544)
                      ..+++||++++++++.+.. ++..            +++|++|++++|.++     .++..+..+++|++|++++|.+.+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            5689999999998865432 2333            577999999999988     457788999999999999998874


Q ss_pred             c-ch-hhhCCC----CccEEEccCCccc-----cCCccccccCCccEEEcCCCCCccCC-ccc-----ccCcCCCEEEcC
Q 009079           83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKELP-SSL-----GRCLNLSDFKAS  145 (544)
Q Consensus        83 l-~~-~~~~~~----~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~-----~~~~~L~~L~l~  145 (544)
                      . +. .+..++    +|++|++++|.++     .++..+..+++|++|++++|.++... ..+     ...++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            2 22 233455    7999999999888     35677889999999999999887321 112     225679999999


Q ss_pred             CCcccc-----CCccccCCCCceEEEecCCccccccchhhc-----CccccceEEcCCCcCCC-----CcccccCCCcee
Q 009079          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (544)
Q Consensus       146 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~  210 (544)
                      +|.+..     ++..+..+++|++|++++|.++......+.     ..++|++|++++|.++.     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            998874     345566788999999999988754433332     35689999999998875     466777888999


Q ss_pred             EEEccCCccccC------CcCCccCCCCCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhccc-----
Q 009079          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ-----  274 (544)
Q Consensus       211 ~L~l~~~~~~~l------~~~~~~~~~L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-----  274 (544)
                      +|++++|.++..      +..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.++........     
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  310 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence            999999887632      2223457889999999998885     677777888999999998887643322211     


Q ss_pred             --ccccEEEccCCCCCC-----CCccccCCCCcceeccCCCCC
Q 009079          275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL  310 (544)
Q Consensus       275 --~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~~  310 (544)
                        .+|++|++++|.++.     ++..+..+++|++|++++|.+
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence              245666666655543     223344455555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-32  Score=277.52  Aligned_cols=348  Identities=20%  Similarity=0.215  Sum_probs=210.7

Q ss_pred             CCccEEEccCCccccCC--ccccccCCccEEEcCCCCCc-----cCCcccccCcCCCEEEcCCCccccC--CccccCCC-
Q 009079           91 HMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL--PEDLADCS-  160 (544)
Q Consensus        91 ~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~-  160 (544)
                      ++|++|+++++.++..+  ..+..+++|++|++++|.++     .++..+..+++|++|++++|.+...  ......++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            45677777777666332  22566677777777777665     2334455555666666666554421  01111122 


Q ss_pred             ---CceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccC-----CcC-CccCCC
Q 009079          161 ---KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-----PSS-ISGCCS  231 (544)
Q Consensus       161 ---~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-----~~~-~~~~~~  231 (544)
                         +|++|++++|.++.....                   .++..+..+++|++|++++|.++..     ... ....++
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~-------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCG-------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHH-------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCceeEEEccCCCCCHHHHH-------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence               355555544444421100                   2344556666666666666665421     111 122446


Q ss_pred             CCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhcc-------cccccEEEccCCCCCC-----CCccc
Q 009079          232 LAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEI  294 (544)
Q Consensus       232 L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~-------~~~L~~L~l~~~~l~~-----l~~~l  294 (544)
                      |++|++++|.+..     ++..+..+++|++|++++|.+........       ..+|++|++++|.+..     ++..+
T Consensus       144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  223 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV  223 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred             ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence            7777777776663     34556677888888888887765433222       1257888888887776     35557


Q ss_pred             cCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCch
Q 009079          295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS  374 (544)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~  374 (544)
                      ..+++|++|++++|.+......                                                      .+.+
T Consensus       224 ~~~~~L~~L~Ls~n~l~~~~~~------------------------------------------------------~l~~  249 (461)
T 1z7x_W          224 ASKASLRELALGSNKLGDVGMA------------------------------------------------------ELCP  249 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHH------------------------------------------------------HHHH
T ss_pred             HhCCCccEEeccCCcCChHHHH------------------------------------------------------HHHH
Confidence            7788899999988876432100                                                      0111


Q ss_pred             hh-ccCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCCHHHHhC-----CCCCCEEECCCCCCCcCC
Q 009079          375 EI-WEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP  443 (544)
Q Consensus       375 ~~-~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~L~l~~n~i~~~~  443 (544)
                      .+ ..+++|++|++++|.++.     ++..+..+++|++|++++|.+++.....+..     .++|++|++++|.+++..
T Consensus       250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  329 (461)
T 1z7x_W          250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  329 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence            11 125677778888777776     5666677788888888888776544333332     267888888888777542


Q ss_pred             ----CCccCCCCCcceEecCCcccCCCCCCCCCC-----CccCceEeecCCccc-----ccCccccCCCCCCeeecCCCC
Q 009079          444 ----SDGFKDIPMLQILDLSYNIASLPENPPFSS-----LPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNS  509 (544)
Q Consensus       444 ----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~ls~n~l~-----~i~~~~~~~~~L~~L~l~~n~  509 (544)
                          ...+..+++|++|++++|.+++.+...+..     +++|+.|++++|.++     .+|..+..+++|++|++++|+
T Consensus       330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                223456678888888888776654443332     568888888888887     567777778888888888888


Q ss_pred             CC
Q 009079          510 LQ  511 (544)
Q Consensus       510 l~  511 (544)
                      ++
T Consensus       410 i~  411 (461)
T 1z7x_W          410 LG  411 (461)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8e-29  Score=238.05  Aligned_cols=191  Identities=26%  Similarity=0.387  Sum_probs=109.5

Q ss_pred             CccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCC-ccccCCCCceEEEecCCccccccchhhcCccccceEEcCC
Q 009079          115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (544)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (544)
                      +++.++++++.++.+|..+.  ++++.|++++|.+..++ ..+.++++|++|++++|.++.+....+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            34445555555554444332  34555555555555442 3455556666666666666655555566666666666666


Q ss_pred             CcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCc---CchhhhCCCCCCEEECCCCcCcccc
Q 009079          194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---LPAELGKLSKLGTLDLHSNQLKEYC  269 (544)
Q Consensus       194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~---l~~~l~~~~~L~~L~l~~~~i~~~~  269 (544)
                      |.++.+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|.+..   .+..+..+ +|+.|++++|.++.++
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            66666655443  567777777777766654 35667777777777776652   23444445 6777777777766655


Q ss_pred             hhcccccccEEEccCCCCCCCC-ccccCCCCcceeccCCCCCc
Q 009079          270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLR  311 (544)
Q Consensus       270 ~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~  311 (544)
                      .... ..|++|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus       189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred             cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            4332 34555555555555543 34555666666666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.2e-26  Score=236.08  Aligned_cols=258  Identities=24%  Similarity=0.254  Sum_probs=187.7

Q ss_pred             ccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCc
Q 009079          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ  264 (544)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~  264 (544)
                      .++.|+++++.++.+|..+.  ++|+.|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|+.|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            46666666666666665444  567777777777666655   35667777777777766665   55677777777777


Q ss_pred             CcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccc
Q 009079          265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (544)
Q Consensus       265 i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (544)
                      ++.++.  ...+|+.|++++|.+..+|..   +++|++|++++|.+..++.                             
T Consensus       113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~-----------------------------  158 (622)
T 3g06_A          113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-----------------------------  158 (622)
T ss_dssp             CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-----------------------------
T ss_pred             CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-----------------------------
Confidence            766655  344577777777777766653   3677777777776654431                             


Q ss_pred             hhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh
Q 009079          345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT  424 (544)
Q Consensus       345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~  424 (544)
                                ....++.+++++|.+..+|   ..+++|+.|++++|.++.+|..   .++|+.|++++|.++.++.    
T Consensus       159 ----------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----  218 (622)
T 3g06_A          159 ----------LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----  218 (622)
T ss_dssp             ----------CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----
T ss_pred             ----------ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----
Confidence                      1134666777777777766   3357889999999988887753   4788999999998887763    


Q ss_pred             CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeee
Q 009079          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD  504 (544)
Q Consensus       425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~  504 (544)
                      .+++|+.|++++|+++.++    ..+++|+.|++++|.++.+..    .+++|+.|++++|.++.+|..+..+++|+.|+
T Consensus       219 ~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred             CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence            3588999999999888876    356889999999998887654    56889999999998888888888899999999


Q ss_pred             cCCCCCCC
Q 009079          505 LSQNSLQS  512 (544)
Q Consensus       505 l~~n~l~~  512 (544)
                      +++|+++.
T Consensus       291 L~~N~l~~  298 (622)
T 3g06_A          291 LEGNPLSE  298 (622)
T ss_dssp             CCSCCCCH
T ss_pred             ecCCCCCC
Confidence            99998873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.5e-29  Score=263.60  Aligned_cols=421  Identities=13%  Similarity=0.057  Sum_probs=234.1

Q ss_pred             hHhhcCCCCCCEEEcCCCCCC----C------------cchhhhCCCCccEEEccCCcccc-CCccccc-cCC-ccEEEc
Q 009079           61 KEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEIGS-ATA-LVKFDC  121 (544)
Q Consensus        61 ~~~~~~~~~L~~L~l~~~~~~----~------------l~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~-~~~-L~~L~l  121 (544)
                      +..+..+++|++|+++++...    .            ++.....+++|++|++++|.++. .+..+.. +++ |++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            345566677777777654210    1            11122356777777777776552 2223333 333 777777


Q ss_pred             CCCC-Cc--cCCcccccCcCCCEEEcCCCccccC-----CccccCCCCceEEEecCCcccccc----chhhcCccccceE
Q 009079          122 SSNQ-LK--ELPSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTEL  189 (544)
Q Consensus       122 ~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L  189 (544)
                      ++|. +.  .++....++++|++|++++|.+...     +.....+++|++|+++++.++.+.    ...+..+++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            6665 21  2222234567777777777765422     123345667777777777665222    2224556777777


Q ss_pred             EcCCCcCCCCcccccCCCceeEEEccCCccc----cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcC
Q 009079          190 IASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (544)
Q Consensus       190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i  265 (544)
                      ++++|.+..++..+..+++|++++++.....    .....+..+++|+.+.+.++....++..+..+++|++|++++|.+
T Consensus       226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            7777777667766777777777777643221    223445666777777777665556666666777777777777765


Q ss_pred             cccchh---cccccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccc
Q 009079          266 KEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (544)
Q Consensus       266 ~~~~~~---~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (544)
                      +.....   ....+|+.|++++ .+.+  ++.....+++|++|++++..........                       
T Consensus       306 ~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~-----------------------  361 (592)
T 3ogk_B          306 ETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE-----------------------  361 (592)
T ss_dssp             CHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST-----------------------
T ss_pred             CHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccc-----------------------
Confidence            432221   1223466666652 2222  2333355666777766620000000000                       


Q ss_pred             cccchhhhhhhhhcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCC-CChhhh-cCCCCcEEEcc----C
Q 009079          341 ASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILS----R  412 (544)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~  412 (544)
                                               .+.++  .+......+++|++|+++.+.+++ .+..+. .+++|++|+++    .
T Consensus       362 -------------------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~  416 (592)
T 3ogk_B          362 -------------------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE  416 (592)
T ss_dssp             -------------------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred             -------------------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence                                     00111  011112235677777776666665 222333 37778888885    4


Q ss_pred             CCCCCC-----CHHHHhCCCCCCEEECCCCC--CCcCCCCc-cCCCCCcceEecCCcccCCCCCC-CCCCCccCceEeec
Q 009079          413 NKIKDW-----PDAILTSLSSLSCLKLDNNP--LRQVPSDG-FKDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLR  483 (544)
Q Consensus       413 ~~l~~~-----~~~~l~~~~~L~~L~l~~n~--i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls  483 (544)
                      +.+++.     ....+..+++|++|++++|.  +++..... ...+++|++|++++|.+++.... .+..+++|+.|+++
T Consensus       417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred             ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence            466653     22335667888888886554  44321111 23477788888888876653322 23567888888888


Q ss_pred             CCccc--ccCccccCCCCCCeeecCCCCCCC--CCcccccceeeeEeccCC
Q 009079          484 RMQLR--EAPTDILRLQQLRILDLSQNSLQS--IPEVTYIFVMLQKKSINT  530 (544)
Q Consensus       484 ~n~l~--~i~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~l~l~~  530 (544)
                      +|.++  .++..+..+++|+.|++++|+++.  +......+|.+....+..
T Consensus       497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            88776  244444568888888888888773  233334566655544443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=3.8e-26  Score=234.37  Aligned_cols=259  Identities=30%  Similarity=0.369  Sum_probs=230.6

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~   88 (544)
                      ..+++++|+++.++.+|..+.               ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence            358999999999999997553               469999999999998886   67999999999999999986   


Q ss_pred             CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  168 (544)
                      .+++|++|++++|.++.+|.   .+++|+.|++++|+++.+|..   +++|++|++++|.+..++..   ..+|+.|+++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~  169 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAY  169 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECC
Confidence            78999999999999999887   678999999999999998864   48999999999999988753   5789999999


Q ss_pred             CCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh
Q 009079          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (544)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~  248 (544)
                      +|.++.++    ..+++|+.|++++|.+..+|..   .++|+.|++++|.++.+|..   +++|+.|++++|.++.+|  
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence            99999887    4568999999999999988754   47899999999999988754   478999999999999988  


Q ss_pred             hhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCcc
Q 009079          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (544)
Q Consensus       249 l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~  312 (544)
                       ..+++|+.|++++|.++.++.  ...+|+.|++++|.+..+|..+..+++|+.|++++|++..
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence             567899999999999999887  5567999999999999999999999999999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2e-29  Score=262.60  Aligned_cols=407  Identities=14%  Similarity=0.095  Sum_probs=245.1

Q ss_pred             CEEEcCCCCCCCcchhhhCCCCccEEEccCCcc-c---cCCcc------------ccccCCccEEEcCCCCCccC-Cccc
Q 009079           71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI-M---KIPDE------------IGSATALVKFDCSSNQLKEL-PSSL  133 (544)
Q Consensus        71 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l-~---~l~~~------------~~~~~~L~~L~l~~~~~~~~-~~~~  133 (544)
                      +.+.+.++.-...+..+..+++|++|+++++.. .   .+|..            ...+++|++|++++|.++.. +..+
T Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l  132 (592)
T 3ogk_B           53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL  132 (592)
T ss_dssp             CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence            345554432223344667889999999988632 1   12211            22677788888887766521 2233


Q ss_pred             cc-CcC-CCEEEcCCCcc-c--cCCccccCCCCceEEEecCCcccccc----chhhcCccccceEEcCCCcCCC-----C
Q 009079          134 GR-CLN-LSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG-----M  199 (544)
Q Consensus       134 ~~-~~~-L~~L~l~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~  199 (544)
                      .. +++ |++|++++|.. .  .++.....+++|++|++++|.+++..    ......+++|++|+++++.+..     +
T Consensus       133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l  212 (592)
T 3ogk_B          133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL  212 (592)
T ss_dssp             HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred             HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence            33 333 77777777652 1  22222345677777777777655432    1224455666666666666542     2


Q ss_pred             cccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC----cCchhhhCCCCCCEEECCCCcCcccchhcc-c
Q 009079          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-Q  274 (544)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~-~  274 (544)
                      +..+..+++|+.|++++|.+..++..+..+++|+.++++.....    ..+..+..+++|+.++++++....++.... .
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence            23344556666666666666555555556666666666542211    222334455555555555543333332221 1


Q ss_pred             ccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009079          275 LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (544)
Q Consensus       275 ~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (544)
                      .+|++|++++|.+.+  +...+..+++|++|++.                                              
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~----------------------------------------------  326 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR----------------------------------------------  326 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE----------------------------------------------
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc----------------------------------------------
Confidence            235555555554332  11223444455554444                                              


Q ss_pred             hcccccceeeecCCCccC-CCchhhccCCCccEEEcCC-----------CCCCC--CChhhhcCCCCcEEEccCCCCCCC
Q 009079          353 TRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDW  418 (544)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~-~i~~~~~~~~~L~~L~l~~-----------~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~  418 (544)
                                   ++... .++.....+++|++|++++           +.++.  ++.....+++|++|+++.+.+++.
T Consensus       327 -------------~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          327 -------------NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             -------------GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             -------------CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence                         11111 1222234478899999994           35554  333456799999999988898876


Q ss_pred             CHHHHhC-CCCCCEEECC----CCCCCcCCCC-----ccCCCCCcceEecCCcc--cCCCCCCCCC-CCccCceEeecCC
Q 009079          419 PDAILTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPFS-SLPHLQELYLRRM  485 (544)
Q Consensus       419 ~~~~l~~-~~~L~~L~l~----~n~i~~~~~~-----~l~~~~~L~~L~l~~n~--l~~~~~~~~~-~l~~L~~L~ls~n  485 (544)
                      ....+.. +++|++|+++    .+.+++.+..     .+.++++|+.|+++.|.  +++.....+. .+++|+.|++++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            5555555 9999999996    5667764321     25678999999997643  4443333333 3789999999999


Q ss_pred             ccc--ccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccCCcccccc
Q 009079          486 QLR--EAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       486 ~l~--~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                      .++  .++..+..+++|+.|++++|+++  .++.....+++|+.|++++|.+...
T Consensus       474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            987  35555677999999999999987  3466567899999999999998754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.4e-26  Score=219.77  Aligned_cols=241  Identities=26%  Similarity=0.339  Sum_probs=213.8

Q ss_pred             cCccEEecccCccc---chhHhhcCCCCCCEEEcCC-CCCC-CcchhhhCCCCccEEEccCCccc-cCCccccccCCccE
Q 009079           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (544)
Q Consensus        45 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~  118 (544)
                      .++++|+++++.+.   .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            47999999999998   5889999999999999995 7776 77889999999999999999998 77888999999999


Q ss_pred             EEcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCC-CceEEEecCCccccccchhhcCccccceEEcCCCc
Q 009079          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (544)
Q Consensus       119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (544)
                      |++++|.++ .+|..++.+++|++|++++|.+. .+|..+..++ +|++|++++|.++......+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 78888999999999999999998 7888899888 999999999999866666688777 9999999999


Q ss_pred             CC-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCc-ccchhc
Q 009079          196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA  272 (544)
Q Consensus       196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~-~~~~~~  272 (544)
                      +. ..+..+..+++|+.|++++|.++..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++ .++...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            86 4577889999999999999999866666888999999999999998 78999999999999999999998 455554


Q ss_pred             ccccccEEEccCCC
Q 009079          273 CQLRLSVLDLSNNS  286 (544)
Q Consensus       273 ~~~~L~~L~l~~~~  286 (544)
                      ...+|+.+++.+|+
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            44558889998886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=3e-29  Score=261.40  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=44.8

Q ss_pred             hhcCCCCcEEEccCCCCCCCCHHHHhC-CCCCCEEECCCCCCCcCCCCcc-CCCCCcceEecCCcccCCCCCC-CCCCCc
Q 009079          399 LSSCASLQTLILSRNKIKDWPDAILTS-LSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENP-PFSSLP  475 (544)
Q Consensus       399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~L~~L~l~~n~i~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~l~  475 (544)
                      +..+++|++|++++ .+++.....+.. +++|++|++++|.+++.....+ .++++|+.|++++|.+++.... ....++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            44556666666655 444433333333 5666666666666544322222 3455666666666655333222 123355


Q ss_pred             cCceEeecCCccc
Q 009079          476 HLQELYLRRMQLR  488 (544)
Q Consensus       476 ~L~~L~ls~n~l~  488 (544)
                      +|+.|++++|.++
T Consensus       507 ~L~~L~l~~~~~~  519 (594)
T 2p1m_B          507 TMRSLWMSSCSVS  519 (594)
T ss_dssp             GSSEEEEESSCCB
T ss_pred             CCCEEeeeCCCCC
Confidence            6666666666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.1e-26  Score=220.48  Aligned_cols=265  Identities=21%  Similarity=0.297  Sum_probs=172.7

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcc-hhh
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAI   87 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~   87 (544)
                      ....+|++++.++.+|..++               ++|++|+++++.++.++. .+.++++|++|++++|.++.++ .++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF   96 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence            34457777777777776543               347777777777776654 6777777777777777777653 467


Q ss_pred             hCCCCccEEEccCCccccCCcc-ccccCCccEEEcCCCCCccCCc--ccccCcCCCEEEcCCC-ccccC-CccccCCCCc
Q 009079           88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKM  162 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L  162 (544)
                      .++++|++|++++|.++.++.. +..+++|++|++++|+++.++.  .+..+++|++|++++| .+..+ +..+.++++|
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  176 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL  176 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence            7777777777777777777655 6777777777777777777665  5667777777777777 35544 3456677777


Q ss_pred             eEEEecCCccccccchhhcCccccceEEcCCCcCCCCccc-ccCCCceeEEEccCCccccCCcC----CccCCCCCEEEc
Q 009079          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFYM  237 (544)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~l~l  237 (544)
                      ++|++++|.++.+....+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.++..    ......++.+++
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            7777777777766666677777777777777777666543 33466777777777766644211    122344555555


Q ss_pred             cCCcCC-----cCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCcc-ccCCCCcceeccCCCCCc
Q 009079          238 GNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR  311 (544)
Q Consensus       238 ~~~~~~-----~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~  311 (544)
                      +++.+.     .+|..+..+++|+.|++++|.++                      .+|.. +..+++|+++++++|++.
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~----------------------~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK----------------------SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCCCCC----------------------ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            555544     24444555555555555555554                      44444 366777777777777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3.5e-26  Score=217.12  Aligned_cols=240  Identities=22%  Similarity=0.321  Sum_probs=206.8

Q ss_pred             CCCCEEEcCCCCCC---CcchhhhCCCCccEEEccC-Cccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCCCE
Q 009079           68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD  141 (544)
Q Consensus        68 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~  141 (544)
                      .++++|+++++.+.   .+|.++.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            58999999999988   4788999999999999995 7777 67888999999999999999998 78888999999999


Q ss_pred             EEcCCCccc-cCCccccCCCCceEEEecCCccccccchhhcCcc-ccceEEcCCCcCC-CCcccccCCCceeEEEccCCc
Q 009079          142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR  218 (544)
Q Consensus       142 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~  218 (544)
                      |++++|.+. .+|..+..+++|++|++++|.++......+..++ .|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 7788899999999999999999855455577777 8999999999986 6778888887 9999999999


Q ss_pred             cc-cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc-cchhccc-ccccEEEccCCCCCC-CCccc
Q 009079          219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE-YCVEACQ-LRLSVLDLSNNSLSG-LPPEI  294 (544)
Q Consensus       219 ~~-~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~-~~L~~L~l~~~~l~~-l~~~l  294 (544)
                      ++ ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+++ ++..... .+|++|++++|.+++ +|. .
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence            88 45677889999999999999998665668889999999999999984 4443332 459999999999986 555 4


Q ss_pred             cCCCCcceeccCCCC
Q 009079          295 GKMTTLRKLLLTGNP  309 (544)
Q Consensus       295 ~~~~~L~~L~l~~~~  309 (544)
                      ..+++|+.+++.+|+
T Consensus       288 ~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccccccChHHhcCCC
Confidence            888999999999997

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.2e-25  Score=213.51  Aligned_cols=240  Identities=23%  Similarity=0.271  Sum_probs=158.0

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc---chhh
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI   87 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l---~~~~   87 (544)
                      +.+++++++++.+|....               +++++|+++++.++.+|. .+.++++|++|++++|.++.+   +.++
T Consensus        10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            567888888888876443               358888888888887765 467888888888888877744   4566


Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc--ccccCcCCCEEEcCCCccccC-CccccCCCCceE
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK  164 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~  164 (544)
                      ..+++|++|++++|.++.++..+..+++|++|++++|.++.++.  .+..+++|++|++++|.+... +..+..+++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            67788888888888877777777778888888888887776653  566777777777777776633 344566677777


Q ss_pred             EEecCCcccc-ccchhhcCccccceEEcCCCcCCCC-cccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCc
Q 009079          165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (544)
Q Consensus       165 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~  241 (544)
                      |++++|.++. .....+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            7777776654 3333455666666666666666544 3455556666666666666655433 34555566666666665


Q ss_pred             CCcC-chhhhCCC-CCCEEECCCCcCc
Q 009079          242 LSAL-PAELGKLS-KLGTLDLHSNQLK  266 (544)
Q Consensus       242 ~~~l-~~~l~~~~-~L~~L~l~~~~i~  266 (544)
                      +... +..+..++ +|+.|++++|.+.
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCee
Confidence            5532 33444442 5555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.3e-25  Score=214.54  Aligned_cols=223  Identities=21%  Similarity=0.273  Sum_probs=181.4

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  124 (544)
                      .+++.|+++++.+..+|..+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            57888888888888888888888888888888888888888888888888888888888888888888888888888886


Q ss_pred             CC-ccCCcccc---------cCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCC
Q 009079          125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (544)
Q Consensus       125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (544)
                      ++ ..+|..++         .+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC  239 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence            54 46665544         38888888888888888888888888888888888888877664 778888888888887


Q ss_pred             cC-CCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCccc
Q 009079          195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY  268 (544)
Q Consensus       195 ~~-~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~  268 (544)
                      .+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+..+
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            66 456777888888888888887655 67777888888888888887655 7788888888888888877665443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=7.6e-26  Score=216.06  Aligned_cols=224  Identities=21%  Similarity=0.314  Sum_probs=202.2

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~   88 (544)
                      ..+++|+++++.++.+|..++.             +++|++|++++|.+..+|..+.++++|++|++++|.++.+|..+.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            6899999999999999977665             578999999999999999999999999999999999999999999


Q ss_pred             CCCCccEEEccCCcc-ccCCcccc---------ccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccC
Q 009079           89 ELHMLKSLDVSFNSI-MKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l-~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  158 (544)
                      ++++|++|++++|.+ +.+|..+.         .+++|++|++++|.++.+|..++.+++|++|++++|.+..++..+..
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            999999999999754 46776655         49999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEecCCccccccchhhcCccccceEEcCCCcC-CCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEE
Q 009079          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY  236 (544)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~  236 (544)
                      +++|++|++++|.+.......+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            99999999999988876666799999999999999876 567888999999999999998766 7899999999999999


Q ss_pred             ccCCcCCcC
Q 009079          237 MGNNALSAL  245 (544)
Q Consensus       237 l~~~~~~~l  245 (544)
                      +..+.+..+
T Consensus       308 l~~~~~~~l  316 (328)
T 4fcg_A          308 VPPHLQAQL  316 (328)
T ss_dssp             CCGGGSCC-
T ss_pred             CCHHHHHHH
Confidence            997766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.6e-26  Score=222.47  Aligned_cols=274  Identities=20%  Similarity=0.273  Sum_probs=173.1

Q ss_pred             ccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEEC
Q 009079          183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDL  260 (544)
Q Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l  260 (544)
                      |+.....+.+++.++.+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|.+..+ +..+.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3444556777777777776554  478888888888776655 677778888888888877755 445777788888888


Q ss_pred             CCCcCcccchhcc--cccccEEEccCCCCCCCCc--cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCC
Q 009079          261 HSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPE  335 (544)
Q Consensus       261 ~~~~i~~~~~~~~--~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (544)
                      ++|.++.++...+  ..+|++|++++|.+..++.  .+..+++|++|++++|. +..++                     
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~---------------------  166 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---------------------  166 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---------------------
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC---------------------
Confidence            8877777665432  2346777777776666554  45666666666666652 32211                     


Q ss_pred             CCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCC
Q 009079          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK  414 (544)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~  414 (544)
                                                           +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus       167 -------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          167 -------------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             -------------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             -------------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence                                                 12334456777777777777663 5567777777777777777


Q ss_pred             CCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc-----c
Q 009079          415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-----E  489 (544)
Q Consensus       415 l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~  489 (544)
                      ++.++...+..+++|+.|++++|++.++....+..                     ....+.++.++++++.+.     .
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cccchhhhhhhcccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhh
Confidence            77666665666777777777777776644322211                     111233444444444433     3


Q ss_pred             cCccccCCCCCCeeecCCCCCCCCCcc-cccceeeeEeccCCccccccc
Q 009079          490 APTDILRLQQLRILDLSQNSLQSIPEV-TYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       490 i~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      +|..+..+++|+.|++++|+++.+|+. +..+++|+.|++++|++.+++
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            555566666677777777766666554 356666777777777666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.4e-25  Score=212.99  Aligned_cols=242  Identities=24%  Similarity=0.280  Sum_probs=147.8

Q ss_pred             ceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC-CccCCCCCEEEccCCcCCcC---chhhhCCCCCCEEECCC
Q 009079          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHS  262 (544)
Q Consensus       187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~l~l~~~~~~~l---~~~l~~~~~L~~L~l~~  262 (544)
                      +.++.+++.++.+|..+.  +++++|++++|.++.++.. +..+++|+.|++++|.+..+   +..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            455666666666665432  4667777777776666543 46666777777777766633   45555666777777776


Q ss_pred             CcCcccchhccc-ccccEEEccCCCCCCCCc--cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079          263 NQLKEYCVEACQ-LRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (544)
Q Consensus       263 ~~i~~~~~~~~~-~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (544)
                      |.+..++..... .+|++|++++|.+..++.  .+..+++|++|++++|.+...                          
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------  141 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--------------------------  141 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------------------------
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------------------------
Confidence            666554433221 225555555555544432  355555555555555544221                          


Q ss_pred             ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC--CChhhhcCCCCcEEEccCCCCCC
Q 009079          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKD  417 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~  417 (544)
                                                      .+..+..+++|++|++++|.+++  +|..+..+++|++|++++|.+++
T Consensus       142 --------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          142 --------------------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             --------------------------------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             --------------------------------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence                                            12223345667777777776654  56666667777777777777776


Q ss_pred             CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCc-cCceEeecCCccc
Q 009079          418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP-HLQELYLRRMQLR  488 (544)
Q Consensus       418 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~  488 (544)
                      +.+..+..+++|++|++++|++.+++...+..+++|+.|++++|.++...+..+..++ +|+.|++++|.++
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            6555566677777777777777766655566677777777777777666666666663 6777777777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=216.07  Aligned_cols=243  Identities=22%  Similarity=0.346  Sum_probs=149.7

Q ss_pred             eeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCc-hhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCC
Q 009079          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN  285 (544)
Q Consensus       209 L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~  285 (544)
                      ...++.++..++.+|..+.  ++++.|++++|.+..++ ..+.++++|+.|++++|.+..+....+.  .+|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4567777777777777653  67888888888887553 5677788888888888877766544333  33666666666


Q ss_pred             CCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079          286 SLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (544)
Q Consensus       286 ~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (544)
                      .+..++. .+..+++|++|++++|.+..++..                                                
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------------------------------------------------  154 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSY------------------------------------------------  154 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTT------------------------------------------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHH------------------------------------------------
Confidence            6666544 355566666666666555433211                                                


Q ss_pred             CCCccCCCchhhccCCCccEEEcCCC-CCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcC
Q 009079          365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (544)
Q Consensus       365 ~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~  442 (544)
                                .+..+++|+.|++++| .++.++. .+..+++|++|++++|.++.++.  +..+++|++|++++|++..+
T Consensus       155 ----------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          155 ----------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             ----------TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred             ----------HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence                      2223456666666663 3444433 35566666666666666665543  45566666666666666665


Q ss_pred             CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCC
Q 009079          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       443 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l  513 (544)
                      ....|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            555566666666666666666666666666666666666666666655433 33466666666666666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.6e-28  Score=253.32  Aligned_cols=434  Identities=15%  Similarity=0.138  Sum_probs=259.5

Q ss_pred             ccEEecccCcccchhHhhcCCCCCCEEEcCCCC-CCCc---------------chhhhCCCCccEEEccCCcccc-CCcc
Q 009079           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-LSEL---------------PAAIGELHMLKSLDVSFNSIMK-IPDE  109 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~l---------------~~~~~~~~~L~~L~l~~~~l~~-l~~~  109 (544)
                      .+.++++.+........+..+++|++|+++++. +.++               +.....+++|++|++++|.++. .+..
T Consensus        45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             ceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            345666665444444567788999999998864 2111               1223567889999999887763 2333


Q ss_pred             cc-ccCCccEEEcCCC-CCcc--CCcccccCcCCCEEEcCCCcccc-----CCccccCCCCceEEEecCCccccccch--
Q 009079          110 IG-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNN--  178 (544)
Q Consensus       110 ~~-~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~--  178 (544)
                      +. .+++|++|++++| .++.  ++....++++|++|++++|.+..     ++.....+++|++|+++++. ..+...  
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence            43 6888999999888 4543  44445578888889888887653     22333467788888888775 222211  


Q ss_pred             --hhcCccccceEEcCCC-cCCCCcccccCCCceeEEEccCCc-------cccCCcCCccCCCCCEE-EccCCcCCcCch
Q 009079          179 --LIASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNR-------ILSIPSSISGCCSLAEF-YMGNNALSALPA  247 (544)
Q Consensus       179 --~~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~l~~~~~~~~~L~~l-~l~~~~~~~l~~  247 (544)
                        ....+++|++|++++| .+..++..+..+++|+.|+++.+.       +..++..+..+++|+.+ .+.+.....++.
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~  283 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA  283 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence              1334577888888777 334455666677777777765442       12333345566666666 333333334444


Q ss_pred             hhhCCCCCCEEECCCCcCcccchhc---ccccccEEEccCCCCCC--CCccccCCCCcceeccCCCCCccccccccCCCc
Q 009079          248 ELGKLSKLGTLDLHSNQLKEYCVEA---CQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (544)
Q Consensus       248 ~l~~~~~L~~L~l~~~~i~~~~~~~---~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (544)
                      .+..+++|++|++++|.++......   ..++|++|++++| +.+  ++.....+++|++|++.++....          
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g----------  352 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV----------  352 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----------
T ss_pred             HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----------
Confidence            4455666666666666644321111   1123555555444 211  11112234444444443321000          


Q ss_pred             hHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCC-Chhh
Q 009079          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQEL-PPEL  399 (544)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~  399 (544)
                                                              ....+.++  .+......+++|+.|.+..+.++.. ...+
T Consensus       353 ----------------------------------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          353 ----------------------------------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             ----------------------------------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             ----------------------------------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence                                                    00111111  0111122378899998888888762 2233


Q ss_pred             -hcCCCCcEEEcc--C----CCCCCCCH-----HHHhCCCCCCEEECCCCCCCcCCCCccC-CCCCcceEecCCcccCCC
Q 009079          400 -SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASLP  466 (544)
Q Consensus       400 -~~~~~L~~L~l~--~----~~l~~~~~-----~~l~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~  466 (544)
                       ..+++|++|+++  +    +.+++.+.     ..+..+++|++|++++ .+++.....+. .+++|+.|++++|.+++.
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence             468999999999  3    46664321     2367789999999977 66653333333 388999999999988766


Q ss_pred             CCCCC-CCCccCceEeecCCcccc--cCccccCCCCCCeeecCCCCCCC--CCcccccceeeeEeccCCccc
Q 009079          467 ENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS--IPEVTYIFVMLQKKSINTELV  533 (544)
Q Consensus       467 ~~~~~-~~l~~L~~L~ls~n~l~~--i~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~l~l~~n~~  533 (544)
                      +...+ ..+++|+.|++++|.++.  +...+..+++|+.|++++|+++.  +......+|.|+...+.++..
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            55444 568999999999998862  23344568999999999999862  222225667777766666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.9e-24  Score=216.53  Aligned_cols=245  Identities=24%  Similarity=0.348  Sum_probs=150.6

Q ss_pred             eeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCC
Q 009079          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN  285 (544)
Q Consensus       209 L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~  285 (544)
                      ...++.++..++.+|..+.  ++++.|++++|.+..+ +..+.++++|+.|++++|.+..++...+.  .+|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            4567777777777776553  5788888888887755 55677788888888888877766544332  23666666666


Q ss_pred             CCCCCCcc-ccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079          286 SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (544)
Q Consensus       286 ~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (544)
                      .+..++.. +..+++|++|++++|.+..++..                                                
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------------------------------  165 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------------------------------------------------  165 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTT------------------------------------------------
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHh------------------------------------------------
Confidence            66654433 55556666666666555433211                                                


Q ss_pred             CCCccCCCchhhccCCCccEEEcCCC-CCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcC
Q 009079          365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (544)
Q Consensus       365 ~~~~~~~i~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~  442 (544)
                                .+..+++|+.|++++| .++.++. .+..+++|++|++++|.+++++.  +..+++|++|++++|++.++
T Consensus       166 ----------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          166 ----------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             ----------TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEE
T ss_pred             ----------HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCccc
Confidence                      2223556666666663 3444443 35666666666666666665542  45666666666666666666


Q ss_pred             CCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       443 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      ....|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-.+
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            555566666666666666666666666666666666666666666655433 3446666666666666664433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.1e-24  Score=202.54  Aligned_cols=218  Identities=28%  Similarity=0.379  Sum_probs=124.4

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCc-chhhhC
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (544)
                      +++++++++++.+|....               +++++|+++++.+..++ ..+.++++|++|++++|.++.+ +.++..
T Consensus        14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcccCCcCCC---------------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            445666665665554332               24566666666555444 2455555666666665555544 345555


Q ss_pred             CCCccEEEccCCc-cccC-CccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEe
Q 009079           90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (544)
Q Consensus        90 ~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  167 (544)
                      +++|++|++++|. ++.+ +..+..+++|++|++++|.++.++                      +..+..+++|++|++
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAALQYLYL  136 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------TTTTTTCTTCCEEEC
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------HhHhhCCcCCCEEEC
Confidence            5555555555554 5544 334555555555555555555432                      223444445555555


Q ss_pred             cCCccccccchhhcCccccceEEcCCCcCCCCcc-cccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC
Q 009079          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL  245 (544)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l  245 (544)
                      ++|.++.++...+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..+
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            5555544444445555555555555555554443 355666677777776666644 55666677777777777777766


Q ss_pred             c-hhhhCCCCCCEEECCCCcCc
Q 009079          246 P-AELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       246 ~-~~l~~~~~L~~L~l~~~~i~  266 (544)
                      + ..+..+++|+.|++++|.+.
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHcccCcccCEEeccCCCcc
Confidence            5 34677777888888777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.1e-25  Score=213.77  Aligned_cols=198  Identities=17%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             CCCCccEEEccCCccc-cCCccc--cccCCccEEEcCCCCCccCCcccccC-----cCCCEEEcCCCccccCC-ccccCC
Q 009079           89 ELHMLKSLDVSFNSIM-KIPDEI--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADC  159 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~-~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~  159 (544)
                      ++++|++|++++|.++ .+|..+  ..+++|++|++++|+++.+|..++.+     ++|++|++++|.+..++ ..+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3444444444444444 233332  44444444444444444444333333     44444444444444333 334444


Q ss_pred             CCceEEEecCCccccc----cchhhcCccccceEEcCCCcCCCCc----ccccCCCceeEEEccCCccccCC--cCCccC
Q 009079          160 SKMSKLDVEGNKLTVL----SNNLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGC  229 (544)
Q Consensus       160 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~  229 (544)
                      ++|++|++++|.+...    ....+..+++|++|++++|.++.++    ..+..+++|++|++++|.++..+  ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            4444444444443221    0111244444555555554444222    11233444555555555444322  223334


Q ss_pred             CCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCC
Q 009079          230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS  288 (544)
Q Consensus       230 ~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~  288 (544)
                      ++|+.|++++|.++.+|..+.  ++|+.|++++|++++++......+|++|++++|.++
T Consensus       253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence            455555555555554444333  445555555555554433222233555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=2.3e-24  Score=202.19  Aligned_cols=242  Identities=26%  Similarity=0.348  Sum_probs=162.0

Q ss_pred             CEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc--ccccEEEccCCCCCCC-CccccCCCCcceeccCCCC
Q 009079          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNP  309 (544)
Q Consensus       233 ~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~  309 (544)
                      +.++.+++.+..+|..  ..+++++|++++|.++.++...+.  .+|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            4566666666666643  245677777777666665543222  2356666665555553 3345555555555555554


Q ss_pred             -CccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcC
Q 009079          310 -LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS  388 (544)
Q Consensus       310 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~  388 (544)
                       +..+                                                          .+..+..+++|++|+++
T Consensus        92 ~l~~~----------------------------------------------------------~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           92 QLRSV----------------------------------------------------------DPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             TCCCC----------------------------------------------------------CTTTTTTCTTCCEEECT
T ss_pred             Ccccc----------------------------------------------------------CHHHhcCCcCCCEEECC
Confidence             3221                                                          12344456778888888


Q ss_pred             CCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCC
Q 009079          389 RNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE  467 (544)
Q Consensus       389 ~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~  467 (544)
                      +|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++++|+++.++...+..+++|+.|++++|.++.+.
T Consensus       114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  193 (285)
T 1ozn_A          114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (285)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence            8887775 445677788888888888887777766777888888888888887777666777888888888888887777


Q ss_pred             CCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccc
Q 009079          468 NPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVD  534 (544)
Q Consensus       468 ~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~  534 (544)
                      +..++.+++|+.|++++|.++.++.. +..+++|+.|++++|++..-.+..+...+++.+..+.+.+.
T Consensus       194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~  261 (285)
T 1ozn_A          194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP  261 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred             HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccc
Confidence            77778888888888888887776643 56678888888888887755444455566666666655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=6.9e-24  Score=211.74  Aligned_cols=242  Identities=23%  Similarity=0.337  Sum_probs=205.4

Q ss_pred             cceEEcCCCcCCCCcccccCCCceeEEEccCCccccCC-cCCccCCCCCEEEccCCcCCcCc-hhhhCCCCCCEEECCCC
Q 009079          186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN  263 (544)
Q Consensus       186 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~l~l~~~~~~~l~-~~l~~~~~L~~L~l~~~  263 (544)
                      .+.++..+..++.+|..+.  +.++.|++++|.+..++ ..+..+++|+.|++++|.+..++ ..+.++++|+.|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            5678888888888887664  68899999999999764 67889999999999999999764 67889999999999999


Q ss_pred             cCcccchhccc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCCCCcc
Q 009079          264 QLKEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (544)
Q Consensus       264 ~i~~~~~~~~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (544)
                      .++.++...+.  .+|++|++++|.+..++. .+..+++|++|++++|. +..++.                        
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------------------  178 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------------------------  178 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------------------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc------------------------
Confidence            99988775443  459999999999988655 58889999999998854 322211                        


Q ss_pred             ccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC
Q 009079          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP  419 (544)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~  419 (544)
                                                        ..+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+.
T Consensus       179 ----------------------------------~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          179 ----------------------------------GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             ----------------------------------TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEEC
T ss_pred             ----------------------------------chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccC
Confidence                                              134447789999999999999874 788999999999999999988


Q ss_pred             HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       420 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      +..|..+++|+.|++++|++..+....|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            888899999999999999999988888999999999999999999999998999999999999998765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.7e-24  Score=206.12  Aligned_cols=236  Identities=21%  Similarity=0.280  Sum_probs=136.3

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhC
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~   89 (544)
                      ++..+++.+.+...+..++..            +++|++|++++|.++.++ ..+.++++|++|++++|.++.++. +..
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~   78 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES   78 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred             eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence            445556666555555555443            345777777777776543 466777777777777777665543 666


Q ss_pred             CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCc-cccCCCCceEEEec
Q 009079           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVE  168 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~  168 (544)
                      +++|++|++++|.++.++    ..++|++|++++|.++.++.  ..+++|++|++++|.+..++. .+..+++|++|+++
T Consensus        79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            677777777777666543    23666777776666665542  224556666666666665432 44555666666666


Q ss_pred             CCccccccchhh-cCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch
Q 009079          169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (544)
Q Consensus       169 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~  247 (544)
                      +|.++.+....+ ..+++|++|++++|.++.++. ...+++|++|++++|.++.++..+..+++|+.|++++|.+..+|.
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence            666655443333 245556666666665555432 223555555555555555555555555555555555555555555


Q ss_pred             hhhCCCCCCEEECCCCcCc
Q 009079          248 ELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       248 ~l~~~~~L~~L~l~~~~i~  266 (544)
                      .+..+++|+.|++++|.+.
T Consensus       232 ~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCB
T ss_pred             HhhcCCCCCEEEccCCCcc
Confidence            5555555555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=3.6e-23  Score=207.36  Aligned_cols=240  Identities=24%  Similarity=0.307  Sum_probs=147.2

Q ss_pred             eEEcCCCcCCCCcccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCCCcC
Q 009079          188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQL  265 (544)
Q Consensus       188 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~i  265 (544)
                      .++..+..++.+|..+.  ++++.|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+.++++|+.|++++|.+
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            33444444444443332  3455555555555533 33445555555555555555533 23455555555555555555


Q ss_pred             cccchhccc--ccccEEEccCCCCCCCCc-cccCCCCcceeccCCCC-CccccccccCCCchHHHHHHhhcCCCCCcccc
Q 009079          266 KEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDSEA  341 (544)
Q Consensus       266 ~~~~~~~~~--~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (544)
                      +.++...+.  .+|++|++++|.+..++. .+..+++|++|++++|. +..++.                          
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------------------  189 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--------------------------  189 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------------------
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh--------------------------
Confidence            555443322  235555555555555443 46677788888887743 322211                          


Q ss_pred             ccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH
Q 009079          342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA  421 (544)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~  421 (544)
                                                      ..+..+++|++|++++|.++.+| .+..+++|++|++++|.++++.+.
T Consensus       190 --------------------------------~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~  236 (452)
T 3zyi_A          190 --------------------------------GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG  236 (452)
T ss_dssp             --------------------------------TTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred             --------------------------------hhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcc
Confidence                                            12333567777777777777765 366777777888877777777777


Q ss_pred             HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       422 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      .|..+++|+.|++++|++..+....|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus       237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            7777778888888877777776666777777888888887777777777777777888887777544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=2e-24  Score=205.69  Aligned_cols=255  Identities=18%  Similarity=0.180  Sum_probs=211.8

Q ss_pred             CccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcc-hhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      .++..+++.+.+.+.+ ..+..+++|++|++++|.++.++ .++..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            3666677777777554 45667789999999999999775 589999999999999999987654 88999999999999


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCc-cc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET  202 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~  202 (544)
                      |.++.++    ..++|++|++++|.+..++..  .+++|++|++++|.++.+....+..+++|++|++++|.+..++ ..
T Consensus        90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           90 NYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             SEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             Ccccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            9988765    348999999999999877543  4688999999999999988878899999999999999998753 34


Q ss_pred             c-cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhccc-ccccEE
Q 009079          203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL  280 (544)
Q Consensus       203 l-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~L  280 (544)
                      + ..+++|++|++++|.++.++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.++..... .+|+.|
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred             HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence            4 4789999999999999877443 358899999999999998888889999999999999999987765433 348899


Q ss_pred             EccCCCCC--CCCccccCCCCcceeccCCC
Q 009079          281 DLSNNSLS--GLPPEIGKMTTLRKLLLTGN  308 (544)
Q Consensus       281 ~l~~~~l~--~l~~~l~~~~~L~~L~l~~~  308 (544)
                      ++++|.+.  .++..+..++.|+.+++.++
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCc
Confidence            99988887  26666777888888777643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.1e-24  Score=207.04  Aligned_cols=240  Identities=16%  Similarity=0.172  Sum_probs=134.5

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCccc--chhHhhc-------CCCCCCEEEcCCCC
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHNK   79 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~-------~~~~L~~L~l~~~~   79 (544)
                      +.+++++++++.+ .+|..+...               +++|+++++.+.  .++..+.       ++++|++|++++|.
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~  106 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE  106 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB
T ss_pred             CCceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc
Confidence            4455556666655 555555432               555566665553  2333333       55666666666666


Q ss_pred             CC-Ccchhh--hCCCCccEEEccCCccccCCcccccc-----CCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCccc
Q 009079           80 LS-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT  150 (544)
Q Consensus        80 ~~-~l~~~~--~~~~~L~~L~l~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  150 (544)
                      ++ .+|..+  ..+++|++|++++|.++.+|..+..+     ++|++|++++|+++.++ ..++.+++|++|++++|.+.
T Consensus       107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            65 344443  55666666666666666555555554     56666666666666554 45556666666666666543


Q ss_pred             c---CCccc--cCCCCceEEEecCCccc---cccchhhcCccccceEEcCCCcCCCCc--ccccCCCceeEEEccCCccc
Q 009079          151 S---LPEDL--ADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRIL  220 (544)
Q Consensus       151 ~---~~~~~--~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~  220 (544)
                      .   ++..+  ..+++|++|++++|.++   .+....+..+++|++|++++|.+...+  ..+..+++|++|++++|.++
T Consensus       187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            2   12222  55566666666666655   222233445566666666666665432  33444556666666666666


Q ss_pred             cCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcc
Q 009079          221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       221 ~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~  267 (544)
                      .+|..+.  ++|+.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            5555444  566666666666665554 5566666666666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-22  Score=188.88  Aligned_cols=134  Identities=28%  Similarity=0.436  Sum_probs=84.7

Q ss_pred             CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      +++|++|++++|.++.++.. +..+++|++|++++|.++.+++..|..+++|++|++++|++..++...+..+++|+.|+
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence            45666666666666665433 45666666666666666666655566666666666666666666655566666666666


Q ss_pred             cCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCC
Q 009079          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS  512 (544)
Q Consensus       458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~  512 (544)
                      +++|.++.+.+..|..+++|+.|++++|.++.+|.. +..+++|+.|++++|++..
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            666666666666666666666666666666655443 4446666666666666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.5e-24  Score=216.71  Aligned_cols=148  Identities=23%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             CCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079          379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  456 (544)
                      +++|+.|++++|.++.+ |..+..+++|+.|++++|.++...+..+. .+++|++|++++|.+++++.  ...+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence            34677777777777774 44577788888888888888876555554 67888888888888887744  3457888888


Q ss_pred             ecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC--CCCcccccceeeeEeccC
Q 009079          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEVTYIFVMLQKKSIN  529 (544)
Q Consensus       457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~l~l~  529 (544)
                      ++++|.++.+.+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++.  .+|..+..++.|+.++++
T Consensus       197 ~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8888888876654 77788888888888888888888888888888888888888  567777888888888875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.6e-23  Score=192.39  Aligned_cols=204  Identities=24%  Similarity=0.240  Sum_probs=166.5

Q ss_pred             hCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHH
Q 009079          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (544)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  328 (544)
                      ..+++++++++++++++.++.... ..++.|++++|.+..+ +..+..+++|++|++++|.+..++.             
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------   72 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------------   72 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------------
T ss_pred             cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------------
Confidence            455666666666666666654432 4567777777777664 3457888889999998887754421             


Q ss_pred             HhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEE
Q 009079          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL  408 (544)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  408 (544)
                                                                    . ..+++|++|++++|.++.+|..+..+++|++|
T Consensus        73 ----------------------------------------------~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           73 ----------------------------------------------D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (290)
T ss_dssp             ----------------------------------------------C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             ----------------------------------------------C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence                                                          1 23568999999999999988888889999999


Q ss_pred             EccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       409 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      ++++|.++.+++..|..+++|++|++++|++..++...|..+++|+.|++++|+++.+....|..+++|+.|++++|.++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            99999999988888899999999999999999988888889999999999999999988888899999999999999999


Q ss_pred             ccCccccCCCCCCeeecCCCCCCCCC
Q 009079          489 EAPTDILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       489 ~i~~~~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      .+|..+...++|+.+++++|++.+-.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             ccChhhcccccCCeEEeCCCCccCcC
Confidence            99999888999999999999987543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1e-22  Score=190.05  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=162.7

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCcch-hhhC
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~   89 (544)
                      .++++++..++.+|..+.               +++++|+++++.+..++. .+.++++|++|++++|.++.++. ++.+
T Consensus        10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            467888888888886553               359999999999987765 78899999999999999987755 7888


Q ss_pred             CCCccEEEccCCccccCC-ccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCcccc--CCccccCCCCceEE
Q 009079           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (544)
Q Consensus        90 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L  165 (544)
                      +++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .++.+++|++|++++|.+..  +|..+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999988765 568899999999999999887765 57888999999999998875  57778888889999


Q ss_pred             EecCCccccccchhhcCccccc----eEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC-CccCCCCCEEEccCC
Q 009079          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN  240 (544)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~l~l~~~  240 (544)
                      ++++|.++.+....+..+++++    ++++++|.+..++.......+|+.|++++|.++.++.. +..+++|+.+++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            9988888877766666666665    56666666655544444444566666666655554432 344455555555554


Q ss_pred             cCC
Q 009079          241 ALS  243 (544)
Q Consensus       241 ~~~  243 (544)
                      .+.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=4.6e-23  Score=192.37  Aligned_cols=159  Identities=23%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             CCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCC-CCccCCCCCcceE
Q 009079          379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQIL  456 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~L  456 (544)
                      +++|++|++++|.++.++ ..+..+++|++|++++|.++.+....+..+++|++|++++|++..+. ...+..+++|+.|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            334444444444444432 23444444555555444444443333444445555555555444422 2334444455555


Q ss_pred             ecCCcccCCCCCCCCCCCccCc----eEeecCCcccccCccccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCc
Q 009079          457 DLSYNIASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTE  531 (544)
Q Consensus       457 ~l~~n~l~~~~~~~~~~l~~L~----~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n  531 (544)
                      ++++|.++.+.+..+..+++|+    .|++++|.++.++.......+|+.|++++|+++.+|. .+..+++|+.|++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            5555544444444444444443    4555555555444444444445555555555554432 2344555555555555


Q ss_pred             cccccc
Q 009079          532 LVDKNQ  537 (544)
Q Consensus       532 ~~~~~~  537 (544)
                      ++.+++
T Consensus       235 ~~~c~c  240 (276)
T 2z62_A          235 PWDCSC  240 (276)
T ss_dssp             CBCCCT
T ss_pred             cccccC
Confidence            555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.6e-22  Score=189.37  Aligned_cols=178  Identities=25%  Similarity=0.276  Sum_probs=156.2

Q ss_pred             ceeeecCCCccCCC-chhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          359 SKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       359 l~~l~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      ++.++++++.+..+ +..+..+++|+.|++++|.++.++.. ..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFN  110 (290)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCch-hhccCCCCCEEECCCC
Confidence            44455555555533 23566688999999999999987654 789999999999999998765 4688999999999999


Q ss_pred             CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCCCcc
Q 009079          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPEV  516 (544)
Q Consensus       438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l~~~  516 (544)
                      +++.++...|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+|... ..+++|+.|++++|+++.+|..
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            999998888999999999999999999999999999999999999999999998765 5699999999999999999999


Q ss_pred             cccceeeeEeccCCcccccccc
Q 009079          517 TYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       517 l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      +...+.|+.+++++|++.++++
T Consensus       191 ~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          191 FFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTTCCCSEEECCSCCBCCSGG
T ss_pred             hcccccCCeEEeCCCCccCcCc
Confidence            9999999999999999998764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1e-22  Score=205.05  Aligned_cols=215  Identities=22%  Similarity=0.283  Sum_probs=125.9

Q ss_pred             ecCccEEecccCcccchh-HhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079           44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~  122 (544)
                      +++|++|++++|.+..++ ..|..+++|++|++++|.++.++. +..+++|++|++++|.++.++.    .++|++|+++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            345666666666666443 466666666666666666664433 6666666666666666665442    2566666666


Q ss_pred             CCCCccCCcccccCcCCCEEEcCCCccccC-CccccCCCCceEEEecCCccccccchhhc-CccccceEEcCCCcCCCCc
Q 009079          123 SNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIA-SWTMLTELIASKNLLNGMP  200 (544)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~  200 (544)
                      +|.++.++.  ..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+....+. .+++|+.|++++|.++.++
T Consensus       108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            666665542  2345666666666666544 33455556666666666666654443333 4566666666666665543


Q ss_pred             ccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCc
Q 009079          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~  266 (544)
                      . ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            2 2235566666666666665555555556666666666666655555555556666666655554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.5e-21  Score=181.21  Aligned_cols=160  Identities=28%  Similarity=0.419  Sum_probs=95.6

Q ss_pred             CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      +++|++|++++|.++.++.. +..+++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            44555556655555555443 35566666666666666665555556666666666666666665555556666666666


Q ss_pred             cCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCccccc
Q 009079          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~  535 (544)
                      +++|.++.+.+..|+.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.+
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            666666666555566666666666666666655433 4456666666666666665543 35556666666666666655


Q ss_pred             ccc
Q 009079          536 NQQ  538 (544)
Q Consensus       536 ~~~  538 (544)
                      ++.
T Consensus       220 ~c~  222 (270)
T 2o6q_A          220 TCN  222 (270)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1e-21  Score=185.82  Aligned_cols=197  Identities=22%  Similarity=0.299  Sum_probs=129.5

Q ss_pred             CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (544)
Q Consensus        66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (544)
                      .+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence            4455666666666555554 45556666666666666555544 555666666666666665553 45556666666666


Q ss_pred             CCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC
Q 009079          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (544)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~  225 (544)
                      +|.+..++. +..+++|++|++++|.++.+..  +..+++|++|++++|.+..++. +..+++|+.|++++|.++.++. 
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence            666665543 5666666666666666665554  6666777777777777766655 6777777788887777776654 


Q ss_pred             CccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchh
Q 009079          226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (544)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~  271 (544)
                      +..+++|+.|++++|.+..++. +..+++|+.|++++|.++..+..
T Consensus       191 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred             hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence            6677788888888888877763 67788888888888877665443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.5e-21  Score=183.16  Aligned_cols=195  Identities=21%  Similarity=0.336  Sum_probs=163.1

Q ss_pred             ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      +++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            456889999988888776 67888899999999888888876 888889999999988888775 578888899999999


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (544)
                      |.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+..  +..+++|++|++++|.+..++. +
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l  191 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-L  191 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-h
Confidence            88888764 7888899999999988887765 7788889999999988887766  7888889999999998887765 7


Q ss_pred             cCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch
Q 009079          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (544)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~  247 (544)
                      ..+++|++|++++|.++.++ .+..+++|+.+++++|.+...|.
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence            78888999999999888776 47888899999999988876654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=2e-21  Score=178.37  Aligned_cols=178  Identities=29%  Similarity=0.366  Sum_probs=163.2

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  435 (544)
                      ...++++++++.+..+|..+.  +.++.|++++|.++.++. .+..+++|++|++++|.++.+.+..|..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356789999999999998774  689999999999998654 58999999999999999999988888999999999999


Q ss_pred             CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCCC
Q 009079          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      +|++..++...+..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.++. .+..+++|+.|++++|+++.++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            999999988889999999999999999999998889999999999999999998876 5778999999999999999885


Q ss_pred             -cccccceeeeEeccCCcccccc
Q 009079          515 -EVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       515 -~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                       ..+..+++|+.|++++|++.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence             4688999999999999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=4.4e-21  Score=178.24  Aligned_cols=137  Identities=23%  Similarity=0.306  Sum_probs=82.5

Q ss_pred             CCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          379 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      +++|++|++++|.++.++.. +..+++|++|++++|.++.+++..+..+++|++|++++|++++++...+..+++|+.|+
T Consensus       108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            45566666666666554433 45566666666666666666555556666666666666666665555556666666666


Q ss_pred             cCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC-CCCcccccce
Q 009079          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFV  521 (544)
Q Consensus       458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~  521 (544)
                      +++|.++.+.+..++.+++|+.|++++|.+.      ..++.|+.+++..|.++ .+|..++.++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            6666666666655666666666666666443      22455666666666665 4555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.9e-21  Score=177.17  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=108.0

Q ss_pred             CCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCc-cccCCc-cccccCCccEEEcCC-CCCccCC-cccccCcCCCEEE
Q 009079           69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK  143 (544)
Q Consensus        69 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-l~~l~~-~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~  143 (544)
                      +|++|++++|.++.++. ++.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.++ ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44455555544444433 44445555555555553 444433 344455555555554 4444443 2344455555555


Q ss_pred             cCCCccccCCccccCCCCce---EEEecCC-ccccccchhhcCccccc-eEEcCCCcCCCCcccccCCCceeEEEccCCc
Q 009079          144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (544)
Q Consensus       144 l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  218 (544)
                      +++|.+..+|. +..+++|+   +|++++| .++.++...+..+++|+ +|++++|.++.+|......++|+.|++++|+
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            55555555443 44455554   6666666 66666666666666666 6666666666555443333667777777773


Q ss_pred             -cccCC-cCCccC-CCCCEEEccCCcCCcCchhhhCCCCCCEEECCCC
Q 009079          219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (544)
Q Consensus       219 -~~~l~-~~~~~~-~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~  263 (544)
                       ++.++ ..+..+ ++|+.+++++|.++.+|..  .+++|+.|++.++
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence             66553 345666 6777777777777766653  5667777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1e-20  Score=175.83  Aligned_cols=179  Identities=26%  Similarity=0.343  Sum_probs=161.0

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      ..++.+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            47899999999988765 4677899999999999999875 688999999999999999999888889999999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC-
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-  514 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~-  514 (544)
                      |++..++...+..+++|++|++++|.++.+.+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.++ 
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            999998888889999999999999999999888899999999999999999987655 467999999999999999775 


Q ss_pred             cccccceeeeEeccCCccccccc
Q 009079          515 EVTYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       515 ~~l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      ..+..+++|+.|++++|++.+.+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCT
T ss_pred             HHHhCCcCCCEEEccCCCccccC
Confidence            45789999999999999998764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.3e-21  Score=175.62  Aligned_cols=192  Identities=21%  Similarity=0.305  Sum_probs=168.9

Q ss_pred             cCccEEecccCcccchhH-hhcCCCCCCEEEcCCCC-CCCcch-hhhCCCCccEEEccC-CccccCCc-cccccCCccEE
Q 009079           45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIPD-EIGSATALVKF  119 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~l~~l~~-~~~~~~~L~~L  119 (544)
                      .++++|+++++.++.++. .+.++++|++|++++|. ++.++. +|.++++|++|++++ |.++.++. .|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            469999999999998876 78999999999999997 888865 789999999999998 89998864 58899999999


Q ss_pred             EcCCCCCccCCcccccCcCCC---EEEcCCC-ccccCCcc-ccCCCCce-EEEecCCccccccchhhcCccccceEEcCC
Q 009079          120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (544)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (544)
                      ++++|.++.+|. ++.+++|+   +|++++| .+..++.. +.++++|+ +|++++|.++.++...+.. ++|++|++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            999999999886 88888888   9999999 88877754 78899999 9999999999888887777 8999999999


Q ss_pred             Cc-CCCCc-ccccCC-CceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079          194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (544)
Q Consensus       194 ~~-~~~~~-~~l~~~-~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~  240 (544)
                      |. ++.++ ..+..+ ++|+.|++++|.++.+|..  .+++|+.|++.++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            95 88775 567888 9999999999999988765  6889999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=182.99  Aligned_cols=226  Identities=20%  Similarity=0.200  Sum_probs=164.4

Q ss_pred             CCCCEEECCCCcCccc-----chhcccccccEEEccCCCCCC-CCccc--cCCCCcceeccCCCCCccccccccCCCchH
Q 009079          253 SKLGTLDLHSNQLKEY-----CVEACQLRLSVLDLSNNSLSG-LPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA  324 (544)
Q Consensus       253 ~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~~~l~~-l~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  324 (544)
                      ..++.+.+.++.+...     .......+|++|++++|.+.+ .|..+  ..+++|++|++++|.+.....         
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~---------  134 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS---------  134 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence            3466666666665421     112222348888888888776 45555  788899999999988753100         


Q ss_pred             HHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCc-hhhccCCCccEEEcCCCCCCCCC-hhhhcC
Q 009079          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELP-PELSSC  402 (544)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~  402 (544)
                                                                    .++ ..++.+++|++|++++|.++.++ ..+..+
T Consensus       135 ----------------------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A          135 ----------------------------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             ----------------------------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ----------------------------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence                                                          000 12234678888888888887755 457888


Q ss_pred             CCCcEEEccCCCCCCC---C-HHHHhCCCCCCEEECCCCCCCcCCCC---ccCCCCCcceEecCCcccCCCCCCCCCCC-
Q 009079          403 ASLQTLILSRNKIKDW---P-DAILTSLSSLSCLKLDNNPLRQVPSD---GFKDIPMLQILDLSYNIASLPENPPFSSL-  474 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~---~-~~~l~~~~~L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-  474 (544)
                      ++|++|++++|.+...   . ...+..+++|++|++++|+++.++..   .+..+++|++|++++|.++...+..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            8999999999886542   1 12235788899999999988754432   24567889999999999888877666666 


Q ss_pred             --ccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcccccc
Q 009079          475 --PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       475 --~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~~  536 (544)
                        ++|+.|++++|.++.+|..+.  ++|+.|++++|+++.+|. +..+++|+.|++++|++...
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence              699999999999998887764  799999999999998865 68889999999999998754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.1e-21  Score=190.48  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=38.7

Q ss_pred             EcCCCcCCC-CcccccCCCceeEEEccCCccccCC-----cCCccCC-CCCEEEccCCcCCcC-chhhhCC-----CCCC
Q 009079          190 IASKNLLNG-MPETIGSLSRLIRLDLHQNRILSIP-----SSISGCC-SLAEFYMGNNALSAL-PAELGKL-----SKLG  256 (544)
Q Consensus       190 ~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~l~l~~~~~~~l-~~~l~~~-----~~L~  256 (544)
                      .++.+.+.+ +|..+...++|++|++++|.++..+     ..+..++ +|++|++++|.+... +..+...     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            455555543 2333344444666666666665443     3344444 566666665555532 2222222     5555


Q ss_pred             EEECCCCcCcc
Q 009079          257 TLDLHSNQLKE  267 (544)
Q Consensus       257 ~L~l~~~~i~~  267 (544)
                      +|++++|.++.
T Consensus        84 ~L~Ls~n~l~~   94 (362)
T 3goz_A           84 SLNLSGNFLSY   94 (362)
T ss_dssp             EEECCSSCGGG
T ss_pred             EEECcCCcCCh
Confidence            55555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=3.6e-21  Score=188.72  Aligned_cols=226  Identities=18%  Similarity=0.205  Sum_probs=170.7

Q ss_pred             ecCccEEecccCcccc-----hhHhhcCCCCCCEEEcCCCCCCC----cchh-------hhCCCCccEEEccCCcccc--
Q 009079           44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK--  105 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~----l~~~-------~~~~~~L~~L~l~~~~l~~--  105 (544)
                      +++|++|++++|.+..     ++..+..+++|++|++++|.+..    +|..       +..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            5778888888888773     33457788888888888875542    2333       3678888888888888775  


Q ss_pred             ---CCccccccCCccEEEcCCCCCcc-----CCcccccC---------cCCCEEEcCCCccc--cCC---ccccCCCCce
Q 009079          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS  163 (544)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~~~---~~~~~~~~L~  163 (544)
                         ++..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|.+.  .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               56677888888888888888762     22233344         78888888888875  333   3566778899


Q ss_pred             EEEecCCcccc-----ccchhhcCccccceEEcCCCcC-----CCCcccccCCCceeEEEccCCcccc-----CCcCCc-
Q 009079          164 KLDVEGNKLTV-----LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS-  227 (544)
Q Consensus       164 ~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~-  227 (544)
                      +|++++|.++.     +....+..+++|++|++++|.+     ..++..+..+++|++|++++|.++.     ++..+. 
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            99998888773     2222477788899999999988     4567788889999999999998873     345553 


Q ss_pred             -cCCCCCEEEccCCcCCc-----Cchhh-hCCCCCCEEECCCCcCcccc
Q 009079          228 -GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC  269 (544)
Q Consensus       228 -~~~~L~~l~l~~~~~~~-----l~~~l-~~~~~L~~L~l~~~~i~~~~  269 (544)
                       .+++|+.|++++|.+..     +|..+ .++++|+.|++++|.++...
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             38999999999999996     77777 66899999999999998655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.7e-21  Score=191.12  Aligned_cols=246  Identities=19%  Similarity=0.169  Sum_probs=170.8

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCC-----cchhhhCCCCccEEEccCCcccc----CCccc-----
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI-----  110 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~~----l~~~~-----  110 (544)
                      +.|+...++...+..++..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+..    +|..+     
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~   88 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ   88 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence            34555555665666788889999999999999998884     34457789999999999976552    33333     


Q ss_pred             --cccCCccEEEcCCCCCcc-----CCcccccCcCCCEEEcCCCcccc-----CCccccCC---------CCceEEEecC
Q 009079          111 --GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEG  169 (544)
Q Consensus       111 --~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~  169 (544)
                        ..+++|++|++++|.++.     ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence              678999999999998875     55677888899999999888762     22233333         7888888888


Q ss_pred             Cccccccc----hhhcCccccceEEcCCCcCCC------CcccccCCCceeEEEccCCccc-----cCCcCCccCCCCCE
Q 009079          170 NKLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAE  234 (544)
Q Consensus       170 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~  234 (544)
                      |.++....    ..+..+++|++|++++|.+..      ++..+..+++|+.|++++|.++     .++..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            87762221    245567778888888887761      2336667777888888877773     45566677777777


Q ss_pred             EEccCCcCCc-----CchhhhC--CCCCCEEECCCCcCcc-----cchhcc--cccccEEEccCCCCCCC
Q 009079          235 FYMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE-----YCVEAC--QLRLSVLDLSNNSLSGL  290 (544)
Q Consensus       235 l~l~~~~~~~-----l~~~l~~--~~~L~~L~l~~~~i~~-----~~~~~~--~~~L~~L~l~~~~l~~l  290 (544)
                      |++++|.+..     ++..+..  +++|++|++++|.++.     ++....  .++|++|++++|.+++.
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            7777777763     3455533  7777777777777765     433331  13466666666666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=2.8e-19  Score=164.01  Aligned_cols=136  Identities=29%  Similarity=0.377  Sum_probs=89.5

Q ss_pred             ccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079          377 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (544)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  455 (544)
                      ..+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|+.
T Consensus        56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence            335566666666666666443 3566667777777777666666666666677777777777776666665666677777


Q ss_pred             EecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCC
Q 009079          456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS  512 (544)
Q Consensus       456 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~  512 (544)
                      |++++|.++.+.+..|+.+++|+.|++++|.++.++. .+..+++|+.|++++|++..
T Consensus       136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            7777777766666666667777777777776665544 34556677777777777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=175.91  Aligned_cols=219  Identities=16%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             cCccEEecccCcccc--hhH--hhcCCCCCCEEEcCCCCCC-Ccchhh--hCCCCccEEEccCCccccC-C----ccccc
Q 009079           45 VDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLS-ELPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGS  112 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~--~~~--~~~~~~~L~~L~l~~~~~~-~l~~~~--~~~~~L~~L~l~~~~l~~l-~----~~~~~  112 (544)
                      ..++.+.+.+..+..  +..  .+..+++|++|++++|.+. ..|..+  ..+++|++|++++|.++.. +    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            345556666555541  111  1222345666666666655 333444  5566666666666665532 1    12334


Q ss_pred             cCCccEEEcCCCCCccCC-cccccCcCCCEEEcCCCcccc---C--CccccCCCCceEEEecCCccccccch---hhcCc
Q 009079          113 ATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASW  183 (544)
Q Consensus       113 ~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~  183 (544)
                      +++|++|++++|.+..++ ..++.+++|++|++++|.+..   +  +..+..+++|++|++++|.++.++..   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            666666666666665444 345566666666666665432   1  12234555666666666665533322   23455


Q ss_pred             cccceEEcCCCcCCCC-cccccCC---CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEE
Q 009079          184 TMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD  259 (544)
Q Consensus       184 ~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~  259 (544)
                      ++|++|++++|.+... |..+..+   ++|++|++++|.++.+|..+.  ++|+.|++++|.+..+|. +..+++|+.|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence            5666666666666544 4444443   456666666666665555442  556666666666655543 45555666666


Q ss_pred             CCCCcCc
Q 009079          260 LHSNQLK  266 (544)
Q Consensus       260 l~~~~i~  266 (544)
                      +++|.++
T Consensus       301 L~~N~l~  307 (310)
T 4glp_A          301 LDGNPFL  307 (310)
T ss_dssp             CSSTTTS
T ss_pred             CcCCCCC
Confidence            6655554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=6.9e-21  Score=184.77  Aligned_cols=244  Identities=19%  Similarity=0.215  Sum_probs=165.4

Q ss_pred             eeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchh-----HhhcCCC-CCCEEEcCCCCCCCc-ch
Q 009079           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA   85 (544)
Q Consensus        13 ~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~-~L~~L~l~~~~~~~l-~~   85 (544)
                      ..+++.+.+....+.....            .++|++|++++|.++..+     +.+..++ +|++|++++|.++.. +.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            3577888877555555443            345899999998888544     6778888 899999998888754 33


Q ss_pred             hhhCC-----CCccEEEccCCccccCCcc-----cccc-CCccEEEcCCCCCccCCc-c----ccc-CcCCCEEEcCCCc
Q 009079           86 AIGEL-----HMLKSLDVSFNSIMKIPDE-----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNC  148 (544)
Q Consensus        86 ~~~~~-----~~L~~L~l~~~~l~~l~~~-----~~~~-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~  148 (544)
                      .+..+     ++|++|++++|.++..+..     +..+ ++|++|++++|.++..+. .    +.. .++|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            44443     8899999998888754332     4444 788999998888875553 2    233 3588888888888


Q ss_pred             cc-----cCCccccCCC-CceEEEecCCccccccchhh----cCc-cccceEEcCCCcCCC-----CcccccC-CCceeE
Q 009079          149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLI----ASW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR  211 (544)
Q Consensus       149 ~~-----~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~  211 (544)
                      +.     .++..+...+ +|++|++++|.++......+    ..+ ++|++|++++|.++.     ++..+.. .++|++
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            77     3333444554 88888888888876554333    334 478888888888765     4455544 357888


Q ss_pred             EEccCCccccCC-----cCCccCCCCCEEEccCCcCCcC--------chhhhCCCCCCEEECCCCcCccc
Q 009079          212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY  268 (544)
Q Consensus       212 L~l~~~~~~~l~-----~~~~~~~~L~~l~l~~~~~~~l--------~~~l~~~~~L~~L~l~~~~i~~~  268 (544)
                      |++++|.++..+     ..+..+++|+.|++++|.+..+        +..+..+++|+.|++++|.+...
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            888888777442     3346667788888877774422        23355666777777777776644

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=1.3e-20  Score=181.26  Aligned_cols=240  Identities=16%  Similarity=0.187  Sum_probs=131.7

Q ss_pred             ccEEecccCcccchhHhhcCC--CCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCcccc--CCccccccCCccEEEcC
Q 009079           47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS  122 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~  122 (544)
                      +++++++++.+.  +..+..+  ++++.++++++.+...+..+..+++|++|++++|.++.  ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            455566555544  3334444  55666666665555444444455666666666665542  44445556666666666


Q ss_pred             CCCCc-cCCcccccCcCCCEEEcCCC-ccc--cCCccccCCCCceEEEecCC-ccccc-cchhhcCcc-ccceEEcCCCc
Q 009079          123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL  195 (544)
Q Consensus       123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~  195 (544)
                      +|.++ ..+..++.+++|++|++++| .+.  .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            66554 33344555666666666665 344  23444555566666666666 55532 122355556 66666666663


Q ss_pred             --C--CCCcccccCCCceeEEEccCCc-cc-cCCcCCccCCCCCEEEccCCc-CC-cCchhhhCCCCCCEEECCCCcCcc
Q 009079          196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       196 --~--~~~~~~l~~~~~L~~L~l~~~~-~~-~l~~~~~~~~~L~~l~l~~~~-~~-~l~~~l~~~~~L~~L~l~~~~i~~  267 (544)
                        +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|+.|++++| ++.
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence              2  2344555566677777777666 33 334455666777777777664 22 11124566777777777777 433


Q ss_pred             cchhcccccccEEEccCCCCCC
Q 009079          268 YCVEACQLRLSVLDLSNNSLSG  289 (544)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~l~~  289 (544)
                      .........+..|++++|.+++
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCC
T ss_pred             HHHHHHHhhCcceEEecccCcc
Confidence            2222222336666677776666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=2.5e-19  Score=161.54  Aligned_cols=155  Identities=29%  Similarity=0.364  Sum_probs=100.4

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      .+.++++++.++.+|..+  .++|+.|++++|.++.+.+..|..+++|++|++++|++..++...|..+++|+.|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            445666666666665533  256666666666666665555666666666666666666666555666666666666666


Q ss_pred             ccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccCCcccccccc
Q 009079          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      .++.+.+..|..+++|+.|++++|.++.+|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++.+++.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            66666666666666677777777666666666666667777777777666664 345666667777777776665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1.6e-19  Score=169.07  Aligned_cols=172  Identities=23%  Similarity=0.308  Sum_probs=154.3

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      +.++.++++++.+..++. +..+++|++|++++|.+++++. +..+++|+.|++++|.+++++.  +..+++|++|++++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            568999999999998854 7778999999999999999877 8999999999999999998654  78999999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV  516 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~  516 (544)
                      |++.+++  .+..+++|+.|++++|.++.+  ..++.+++|+.|++++|.++.++. +..+++|+.|++++|+++.+++ 
T Consensus       122 n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-  195 (291)
T 1h6t_A          122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-  195 (291)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred             CcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence            9999874  488899999999999999887  568899999999999999998866 8889999999999999999876 


Q ss_pred             cccceeeeEeccCCcccccccc
Q 009079          517 TYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       517 l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      +..+++|+.|++++|++.....
T Consensus       196 l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEECCCE
T ss_pred             hccCCCCCEEECcCCcccCCcc
Confidence            8999999999999999875443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=5.2e-19  Score=165.61  Aligned_cols=168  Identities=20%  Similarity=0.300  Sum_probs=83.6

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  124 (544)
                      ++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus        46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence            34555555555555443 24445555555555555554443 4555555555555555544432 445555555555555


Q ss_pred             CCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccccc
Q 009079          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (544)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (544)
                      .++.+ ..+..+++|+.|++++|.+..+ ..                        +..+++|++|++++|.+..++. +.
T Consensus       123 ~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~------------------------l~~l~~L~~L~L~~N~l~~~~~-l~  175 (291)
T 1h6t_A          123 GISDI-NGLVHLPQLESLYLGNNKITDI-TV------------------------LSRLTKLDTLSLEDNQISDIVP-LA  175 (291)
T ss_dssp             CCCCC-GGGGGCTTCCEEECCSSCCCCC-GG------------------------GGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred             cCCCC-hhhcCCCCCCEEEccCCcCCcc-hh------------------------hccCCCCCEEEccCCccccchh-hc
Confidence            55444 2344444455555554444444 23                        4444555555555555544433 44


Q ss_pred             CCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC
Q 009079          205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (544)
Q Consensus       205 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~  243 (544)
                      .+++|+.|++++|.++.++. +..+++|+.|++++|.+.
T Consensus       176 ~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             CCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence            55555555555555554432 445555555555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=4.2e-20  Score=177.72  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=31.5

Q ss_pred             CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCc--CchhhhCCCCCCEEECCCCcCc
Q 009079          207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLHSNQLK  266 (544)
Q Consensus       207 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~i~  266 (544)
                      +.++.++++++.+...+..+..+++|+.|++++|.+..  ++..+..+++|++|++++|.++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~  131 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS  131 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence            34555555555554443344445555555555555541  4445555666666666555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=1e-19  Score=176.29  Aligned_cols=179  Identities=25%  Similarity=0.366  Sum_probs=159.7

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hh-cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  435 (544)
                      ..+.++++++.+..+|..+.  ..++.|++++|.++.++.. +. .+++|+.|++++|.++.+.+..|..+++|++|+++
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            34689999999999998764  5699999999999997655 55 89999999999999999988889999999999999


Q ss_pred             CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccc----cCCCCCCeeecCCCCCC
Q 009079          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~----~~~~~L~~L~l~~n~l~  511 (544)
                      +|++..++...|..+++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+|..+    ..+++|+.|++++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99999998888999999999999999999999999999999999999999999998776    46999999999999999


Q ss_pred             CCC-ccccccee--eeEeccCCcccccccc
Q 009079          512 SIP-EVTYIFVM--LQKKSINTELVDKNQQ  538 (544)
Q Consensus       512 ~l~-~~l~~~~~--L~~l~l~~n~~~~~~~  538 (544)
                      .+| ..+..++.  ++.|++++|++.++++
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            887 45677776  4889999999998875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=4.4e-19  Score=158.78  Aligned_cols=154  Identities=26%  Similarity=0.372  Sum_probs=123.3

Q ss_pred             ceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      -+.+++++++++.+|..+.  +.++.|++++|.++.++. .+..+++|+.|++++|.++.+.+..|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4677888888888887663  678888888888887665 5778888888888888888877777888888888888888


Q ss_pred             CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      +++.++...|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|++.+-.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            88888777778888888888888888888888888888888888888888877654 566888888888888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=9.8e-19  Score=177.19  Aligned_cols=186  Identities=31%  Similarity=0.433  Sum_probs=147.7

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  125 (544)
                      +++.|+++++.++.+|..+  +++|++|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            6888888888888777655  378888888888888887   457888888888888888877 544  88888888888


Q ss_pred             CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (544)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (544)
                      ++.+|.   .+++|+.|++++|.++.+|.   .+++|++|++++|.++.++.  +.  ++|+.|++++|.++.+|. +..
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence            888776   57888888888888888776   56788888888888888766  44  788888888888888877 544


Q ss_pred             CCce-------eEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCC
Q 009079          206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKL  252 (544)
Q Consensus       206 ~~~L-------~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~  252 (544)
                        +|       +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence              67       9999999999999888888999999999999987 445555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=6.1e-19  Score=156.83  Aligned_cols=170  Identities=26%  Similarity=0.374  Sum_probs=141.2

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      ..+.++++++++..+|..+  .+++++|++++|.++.++.. +..+++|++|++++|.++.++...|..+++|++|++++
T Consensus         8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            3467788888888888766  45899999999998887654 67889999999999999988887788899999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      |++..++...+..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|++..   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            999988877788899999999999999988888888899999999999999877665 5668999999999997763   


Q ss_pred             ccccceeeeEeccCCccccc
Q 009079          516 VTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       516 ~l~~~~~L~~l~l~~n~~~~  535 (544)
                         .++.|+.|++++|.+.+
T Consensus       163 ---~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTT
T ss_pred             ---CCCCHHHHHHHHHhCCc
Confidence               33467777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=5.2e-19  Score=158.27  Aligned_cols=155  Identities=24%  Similarity=0.289  Sum_probs=124.5

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCC--hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  435 (544)
                      ..+.++++++.++.+|..+  ...+++|++++|.++.++  ..+..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus        12 ~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3467888888888888766  345678888888888763  237788888888888888888877778888888888888


Q ss_pred             CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC
Q 009079          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      +|++..++...|..+++|++|++++|.++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.+-.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            8888888777788888888888888888888888888888888888888888866 666777888888888888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.6e-18  Score=175.68  Aligned_cols=180  Identities=26%  Similarity=0.376  Sum_probs=159.3

Q ss_pred             CCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCC
Q 009079           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (544)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  147 (544)
                      .+++.|++++|.++.+|..+  .++|++|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            38999999999999998765  378999999999999998   567999999999999999987 654  9999999999


Q ss_pred             ccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCc
Q 009079          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS  227 (544)
Q Consensus       148 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~  227 (544)
                      .+..+|.   .+++|+.|++++|.++.++.    .+++|++|++++|.++.+|. +.  ++|+.|++++|.++.+|. +.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~  199 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP  199 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence            9999887   68999999999999998775    57899999999999999988 65  899999999999999888 54


Q ss_pred             cCCCC-------CEEEccCCcCCcCchhhhCCCCCCEEECCCCcCccc
Q 009079          228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (544)
Q Consensus       228 ~~~~L-------~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~  268 (544)
                      .  +|       +.|++++|.++.+|..+..+++|+.|++++|.+++.
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            3  77       999999999999999888899999999999999754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.6e-19  Score=157.57  Aligned_cols=154  Identities=13%  Similarity=0.208  Sum_probs=135.4

Q ss_pred             ccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (544)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  456 (544)
                      ..++++++|++++|.++.++ .+..+++|++|++++|.++.+.  .+..+++|++|++++|++.+.....+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            44678999999999999988 6899999999999999887765  47889999999999999998555668999999999


Q ss_pred             ecCCcccCCCCCCCCCCCccCceEeecCCc-ccccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccc
Q 009079          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~  535 (544)
                      ++++|.++...+..++.+++|+.|++++|. ++.+| .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++..
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            999999998777888999999999999997 88886 6888999999999999999987 68999999999999999865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=5.2e-19  Score=162.91  Aligned_cols=169  Identities=20%  Similarity=0.212  Sum_probs=144.1

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      .+..++++++.+..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++++++  +..+++|++|++++|
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence            4566777888887776 5667889999999999999887 68889999999999999998876  789999999999999


Q ss_pred             CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT  517 (544)
Q Consensus       438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l  517 (544)
                      ++.+++..  .. ++|+.|++++|.++.+  ..++.+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+ +.+
T Consensus        96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l  168 (263)
T 1xeu_A           96 RLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL  168 (263)
T ss_dssp             CCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred             ccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence            99887653  33 8999999999988886  35888999999999999999885 678899999999999999987 568


Q ss_pred             ccceeeeEeccCCccccccc
Q 009079          518 YIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       518 ~~~~~L~~l~l~~n~~~~~~  537 (544)
                      ..+++|+.|++++|.+....
T Consensus       169 ~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECCC
T ss_pred             ccCCCCCEEeCCCCcccCCc
Confidence            89999999999999987653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.5e-18  Score=167.46  Aligned_cols=233  Identities=20%  Similarity=0.238  Sum_probs=170.5

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCC-Ccch-hhh
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG   88 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~-~l~~-~~~   88 (544)
                      ++++|++++++.+|.++.               +++++|++++|.|+.+|. +|.++++|++|++++|.+. .++. +|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            678999999999987664               358999999999998875 6889999999999999875 4543 778


Q ss_pred             CCCCccE-EEccCCccccC-CccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCC-CccccCCc-cccCC-CCc
Q 009079           89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM  162 (544)
Q Consensus        89 ~~~~L~~-L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~-~~L  162 (544)
                      ++++|+. +.+..|+++.+ +..|..+++|++|++++|+++.++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            8888775 45556788877 4558889999999999998887764 344556677777755 45555543 23443 367


Q ss_pred             eEEEecCCccccccchhhcCccccceEEcCC-CcCCCCcc-cccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCC
Q 009079          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (544)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~  240 (544)
                      +.|++++|.++.++...+.. .+++++.+.+ +.++.+|. .|..+++|+.|++++|+++.+|...  +.+|+.|.+.++
T Consensus       157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccC
Confidence            88888888888877775543 5678888764 66777764 5678888888888888888876532  556677765554


Q ss_pred             -cCCcCchhhhCCCCCCEEECCCC
Q 009079          241 -ALSALPAELGKLSKLGTLDLHSN  263 (544)
Q Consensus       241 -~~~~l~~~l~~~~~L~~L~l~~~  263 (544)
                       .++.+|. +..+++|+.+++.++
T Consensus       234 ~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             CCcCcCCC-chhCcChhhCcCCCC
Confidence             4556664 677788888877643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.7e-18  Score=154.99  Aligned_cols=156  Identities=22%  Similarity=0.281  Sum_probs=141.1

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      -+.++++++.++.+|..+.  ++++.|++++|.++.++...|..+++|++|++++|++..+....|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            4689999999999987654  78999999999999988888899999999999999999988888999999999999999


Q ss_pred             ccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCC-cccccceeeeEeccCCccccccccc
Q 009079          462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EVTYIFVMLQKKSINTELVDKNQQF  539 (544)
Q Consensus       462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~l~l~~n~~~~~~~~  539 (544)
                      .++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++.+++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999988899999999999999999977 566778999999999999999885 4588999999999999999887653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=154.31  Aligned_cols=156  Identities=19%  Similarity=0.271  Sum_probs=140.7

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCC-HHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      -+.++++++.++.+|..+  .+.+++|++++|.++.+. ...|..+++|++|++++|+++.++...|..+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            468999999999998754  356799999999999874 45578999999999999999999888899999999999999


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCC-CcccccceeeeEeccCCcccccccc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEVTYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      |.++.+.+..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.+++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999999999999999977 67788899999999999999987 7789999999999999999998776


Q ss_pred             c
Q 009079          539 F  539 (544)
Q Consensus       539 ~  539 (544)
                      .
T Consensus       171 l  171 (220)
T 2v70_A          171 L  171 (220)
T ss_dssp             G
T ss_pred             h
Confidence            3

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=8.1e-18  Score=162.23  Aligned_cols=209  Identities=18%  Similarity=0.213  Sum_probs=148.3

Q ss_pred             cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcch-hhhCCCCccEEEccCCccc-cCCc-cccccCCccE-EEcCC
Q 009079           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIPD-EIGSATALVK-FDCSS  123 (544)
Q Consensus        48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~~L~~-L~l~~  123 (544)
                      +.++.+++.++++|..+  .+++++|++++|+++.+|. +|.++++|++|++++|.+. .++. .|..++++++ +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            67889999999998776  3689999999999999976 7899999999999999875 4554 4788888775 55667


Q ss_pred             CCCccCC-cccccCcCCCEEEcCCCccccCCcc-ccCCCCceEEEecC-CccccccchhhcCcc-ccceEEcCCCcCCCC
Q 009079          124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM  199 (544)
Q Consensus       124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~  199 (544)
                      |+++.++ ..+..+++|++|++++|.+..++.. +....++..+++.+ +.+..++...|..+. .++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            8888775 4678888999999999888876543 44556677787755 466666666566554 466677777777666


Q ss_pred             cccccCCCceeEEEccC-CccccCCc-CCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEEC
Q 009079          200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL  260 (544)
Q Consensus       200 ~~~l~~~~~L~~L~l~~-~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l  260 (544)
                      +.......+|+++++++ |.++.+|. .+..+++|+.|++++|.++.+|.  ..+.+|+.|.+
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~  230 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRA  230 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEEC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhh
Confidence            65555556677777653 55556654 34566666666666666666654  23444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.9e-18  Score=174.88  Aligned_cols=170  Identities=24%  Similarity=0.311  Sum_probs=147.4

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      ..++.|+++++.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|+|++|.++.++  .+..+++|+.|++++
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence            46888999999988876 47778999999999999998876 889999999999999998865  478899999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCcc
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV  516 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~  516 (544)
                      |++.+++  .+..+++|+.|++++|.++.+  ..+..+++|+.|+|++|.+..++. +..+++|+.|+|++|+++.+++ 
T Consensus       119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-  192 (605)
T 1m9s_A          119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-  192 (605)
T ss_dssp             SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred             CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH-
Confidence            9998874  478899999999999998887  568889999999999999987765 7889999999999999998864 


Q ss_pred             cccceeeeEeccCCcccccc
Q 009079          517 TYIFVMLQKKSINTELVDKN  536 (544)
Q Consensus       517 l~~~~~L~~l~l~~n~~~~~  536 (544)
                      +..+++|+.|++++|++...
T Consensus       193 l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECC
T ss_pred             HccCCCCCEEEccCCcCcCC
Confidence            78899999999999988765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=9.9e-18  Score=148.96  Aligned_cols=155  Identities=30%  Similarity=0.362  Sum_probs=139.7

Q ss_pred             CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      .-+.++++++.++.+|..+  .++|++|++++|.++.++...|..+++|++|++++|++..++...+..+++|++|++++
T Consensus         8 ~~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            3467899999999988654  56999999999999999888889999999999999999999888889999999999999


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc-ccccceeeeEeccCCccccccc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-VTYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      |.++.+.+..|+.+++|+.|++++|.++.++.. +..+++|+.|++++|+++.+++ .+..+++|+.|++++|++.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            999999888899999999999999999988765 5679999999999999998865 4788999999999999988764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=8.6e-18  Score=172.33  Aligned_cols=172  Identities=23%  Similarity=0.348  Sum_probs=131.0

Q ss_pred             ecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      +++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            456888888888887775 57778888888888888887765 777888888888888877765 577788888888888


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccc
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (544)
                      |.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+..  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            8887763 577778888888888877776 567777888888888887776655  777777888888888777764 47


Q ss_pred             cCCCceeEEEccCCccccCC
Q 009079          204 GSLSRLIRLDLHQNRILSIP  223 (544)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~l~  223 (544)
                      ..+++|+.|++++|.+...|
T Consensus       194 ~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCTTCSEEECCSEEEECCC
T ss_pred             ccCCCCCEEEccCCcCcCCc
Confidence            77777888888777776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=3.2e-18  Score=157.63  Aligned_cols=169  Identities=20%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  124 (544)
                      .+++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence            34666666666666655 4566677777777777766665 56666777777777777666655 666677777777777


Q ss_pred             CCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCccccc
Q 009079          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (544)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (544)
                      +++.++....  ++|++|++++|.+..++ .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+..+ ..+.
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~  169 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLT  169 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhc
Confidence            6666553222  66666666666666553 3556666666666666666553  255556666666666666555 4455


Q ss_pred             CCCceeEEEccCCccccC
Q 009079          205 SLSRLIRLDLHQNRILSI  222 (544)
Q Consensus       205 ~~~~L~~L~l~~~~~~~l  222 (544)
                      .+++|+.|++++|.++..
T Consensus       170 ~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEeCCCCcccCC
Confidence            566666666666655544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.75  E-value=5.2e-17  Score=159.27  Aligned_cols=119  Identities=15%  Similarity=0.224  Sum_probs=69.1

Q ss_pred             CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  458 (544)
                      +..++.+......+..  .++..+.+|+.+.+..+ ++.+...+|.+|.+|+.+++.. .++.+...+|.+|++|+.+++
T Consensus       275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECC
T ss_pred             ccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEE
Confidence            3444444444332221  23556666666666543 5556666666667777776653 366666666667777777776


Q ss_pred             CCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCee
Q 009079          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL  503 (544)
Q Consensus       459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L  503 (544)
                      ..+ ++.++..+|.+|++|+.+++..+ ++.+...|.++++|+.+
T Consensus       351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          351 PLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             Ccc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            655 66666666666667776666544 33334445556655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.7e-17  Score=148.22  Aligned_cols=156  Identities=26%  Similarity=0.314  Sum_probs=140.0

Q ss_pred             cccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEEC
Q 009079          356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (544)
Q Consensus       356 ~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l  434 (544)
                      .+..+.++++++.+..+|..+.  ++++.|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|++
T Consensus        18 ~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           18 SCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             EEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            3456789999999999998774  8999999999999996 566899999999999999999998888899999999999


Q ss_pred             CCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCCCC
Q 009079          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       435 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      ++|+++.++...|..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.+-
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99999999888899999999999999999966 4567889999999999999998875 466799999999999999855


Q ss_pred             C
Q 009079          514 P  514 (544)
Q Consensus       514 ~  514 (544)
                      +
T Consensus       175 c  175 (229)
T 3e6j_A          175 C  175 (229)
T ss_dssp             B
T ss_pred             c
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=7.2e-18  Score=148.30  Aligned_cols=151  Identities=19%  Similarity=0.248  Sum_probs=132.4

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      +.++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            57899999999999888 6888999999999999887775 688899999999999999875555688999999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcc-cCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS  512 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~  512 (544)
                      |++.+.....+..+++|++|++++|. ++.+.  .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99998655678999999999999997 77774  5899999999999999999887 77889999999999999863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=3.5e-17  Score=156.45  Aligned_cols=103  Identities=17%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc-eEecCCcccCCCCCCCCCCCccCce
Q 009079          401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQE  479 (544)
Q Consensus       401 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~  479 (544)
                      .|++|+++++++|.++.++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++.+ .++.++..+|.+|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            3677777777777777777777777777777777766 6667777777777777 777776 566777777777777777


Q ss_pred             EeecCCcccccCc-cccCCCCCCeeec
Q 009079          480 LYLRRMQLREAPT-DILRLQQLRILDL  505 (544)
Q Consensus       480 L~ls~n~l~~i~~-~~~~~~~L~~L~l  505 (544)
                      +++++|.++.++. .|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            7777777776654 4455777777653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=6.5e-19  Score=179.58  Aligned_cols=178  Identities=19%  Similarity=0.188  Sum_probs=101.3

Q ss_pred             eeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCC-------------CC-CcchhhhCCCCccEEE-ccCCccccC
Q 009079           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI  106 (544)
Q Consensus        42 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~l~~l  106 (544)
                      +.+++|+.|+++++.++.+|..+.++++|++|+++++.             .. .+|..+..+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45778888899988888888888888888888886653             11 3345666666777666 444433322


Q ss_pred             Cc------cccc--cCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccch
Q 009079          107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (544)
Q Consensus       107 ~~------~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  178 (544)
                      +.      .+..  ...|+.|++++|.++.+|. ++.+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++  
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence            21      0111  1235556666665555554 55555556666555555555555555555555555555555443  


Q ss_pred             hhcCccccceEEcCCCcCCCC--cccccCCCceeEEEccCCccccC
Q 009079          179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSI  222 (544)
Q Consensus       179 ~~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~l  222 (544)
                      .++.+++|+.|++++|.++.+  |..+..+++|+.|++++|.++.+
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            244444555555555444444  44444444444444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=8e-17  Score=155.91  Aligned_cols=153  Identities=25%  Similarity=0.283  Sum_probs=137.4

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh-CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      -+.++++++.++.+|..+  .+.++.|++++|.++.+....|. .+++|+.|++++|++..++...|..+++|++|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            468999999999998754  35699999999999998887777 899999999999999999888899999999999999


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCCccc----ccceeeeEeccCCccccc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEVT----YIFVMLQKKSINTELVDK  535 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~~l----~~~~~L~~l~l~~n~~~~  535 (544)
                      |.++.+.+..|..+++|+.|+|++|.++.+ +..+..+++|+.|++++|+++.+|...    ..+++|+.|++++|.+..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            999999999999999999999999999977 566788999999999999999997654    579999999999999975


Q ss_pred             c
Q 009079          536 N  536 (544)
Q Consensus       536 ~  536 (544)
                      .
T Consensus       178 l  178 (361)
T 2xot_A          178 L  178 (361)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.68  E-value=1.4e-15  Score=149.05  Aligned_cols=144  Identities=15%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             hccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (544)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  455 (544)
                      +..+..++.+.+..+...--...+..+..++.+......+   +...|..+.+|+.+.+.++ +..++..+|.+|++|+.
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            3446778888887765443445688899999998876543   4455788999999999764 88888889999999999


Q ss_pred             EecCCcccCCCCCCCCCCCccCceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCCcccccceeeeEe
Q 009079          456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKK  526 (544)
Q Consensus       456 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l  526 (544)
                      +++.++ ++.++..+|.+|.+|+.+++..+ ++.|+ ..|..|++|+.+++..+ +..+...+..+++|+.+
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            999865 88899999999999999999877 66664 45667999999999754 55566678899999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=5.3e-18  Score=172.90  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=154.6

Q ss_pred             HhhhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCc--------------ccchhHhhcCCCCCCE
Q 009079            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTV   72 (544)
Q Consensus         7 ~~~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------l~~~~~~~~~~~~L~~   72 (544)
                      ....++.|+|++|.++.+|+.+..             +++|+.|+++.+.              ....|..+..+++|+.
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc
Confidence            456788999999999999987765             5778888886653              2245667888888888


Q ss_pred             EE-cCCCCCCCcch------hhhC--CCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEE
Q 009079           73 LN-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (544)
Q Consensus        73 L~-l~~~~~~~l~~------~~~~--~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (544)
                      |+ ++.+.+..++.      .+..  ...|++|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|+
T Consensus       414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  492 (567)
T 1dce_A          414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ  492 (567)
T ss_dssp             HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEE
T ss_pred             CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEE
Confidence            88 55554443321      1111  2368999999999999987 8999999999999999999999999999999999


Q ss_pred             cCCCccccCCccccCCCCceEEEecCCcccccc-chhhcCccccceEEcCCCcCCCCcccc----cCCCceeEEEc
Q 009079          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETI----GSLSRLIRLDL  214 (544)
Q Consensus       144 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~l  214 (544)
                      +++|.++.+| .+..+++|+.|++++|.++.+. ...+..+++|+.|++++|.++.+|...    ..+++|+.|++
T Consensus       493 Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999988 8899999999999999999885 566899999999999999998765432    34677887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=3.1e-16  Score=136.98  Aligned_cols=128  Identities=23%  Similarity=0.300  Sum_probs=94.5

Q ss_pred             ceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh--hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       359 l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      .+.++++++.+..+|..+.  .++++|++++|.++.++..  +..+++|++|++++|.++.+.+..|..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4677777777777777553  3777777777777776543  67777777777777777777666677777777777777


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      |++..++...|..+++|+.|++++|+++.+.+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            7777776666777777777777777777777777777777777777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=1.4e-16  Score=136.23  Aligned_cols=134  Identities=22%  Similarity=0.169  Sum_probs=92.1

Q ss_pred             CCccEEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      ++++.|++++|.++  .+|..+..+++|+.|++++|.++.+  ..+..+++|++|++++|++.+.....+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56777777777776  5666667777777777777777766  4456677777777777777664344455567777777


Q ss_pred             cCCcccCCCCC-CCCCCCccCceEeecCCcccccCc----cccCCCCCCeeecCCCCCCCCCc
Q 009079          458 LSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       458 l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~----~~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      +++|.++.+.. ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|.+..+|+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            77777666532 556667777777777777776665    55667777777777777776664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=1e-14  Score=142.07  Aligned_cols=127  Identities=11%  Similarity=0.180  Sum_probs=73.3

Q ss_pred             CccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCCCCC-----CCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcc
Q 009079          381 EITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (544)
Q Consensus       381 ~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~  454 (544)
                      +|+.+.+. +.++.+ ..+|..|++|+.+++.++.+.     .+...+|.+|++|+.+.+. +.+..+...+|.+|++|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            34444442 223333 234556666666666555443     3555566666666666666 346666666666667777


Q ss_pred             eEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCC-CCCeeecCCCCCC
Q 009079          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQ-QLRILDLSQNSLQ  511 (544)
Q Consensus       455 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~-~L~~L~l~~n~l~  511 (544)
                      .+++.++ ++.+...+|.+| +|+.+++++|.+..++.. |..++ .++.|++..+.+.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            7776544 666666666666 677777776666554333 33343 5666666655544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.65  E-value=7.2e-15  Score=144.02  Aligned_cols=130  Identities=13%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (544)
Q Consensus       398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (544)
                      +|..|..|+.+.+..+ +..+...+|.++++|+.+.+. +.+..++..+|.+|++|+.+++.++ ++.++..+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            4666777777777653 344555666777777777774 4566666677777777777777654 666677777777777


Q ss_pred             ceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccc
Q 009079          478 QELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELV  533 (544)
Q Consensus       478 ~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~  533 (544)
                      +.+.+..+ ++.|. ..|.+|++|+.+++.++....  ..+..+..|+.+.+..+.+
T Consensus       337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            77777654 55553 345567777777777664331  2355666777776665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.6e-15  Score=131.04  Aligned_cols=127  Identities=27%  Similarity=0.378  Sum_probs=71.9

Q ss_pred             eeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCC
Q 009079          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (544)
Q Consensus       360 ~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i  439 (544)
                      +.++++++.+..+|..+  .+++++|++++|.++.+|..+..+++|+.|++++|.++.+.+..|..+++|++|++++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            45555666655555544  2455566666665555555555555666666666555555555555555555555555555


Q ss_pred             CcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       440 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      ..++...|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            5555555555555555555555555555555555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=9.6e-15  Score=142.30  Aligned_cols=126  Identities=9%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             CCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC-----cCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccC
Q 009079          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (544)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  477 (544)
                      .+|+.+.+. +.++.+...+|.+|++|+.+.+.++.+.     .++..+|.+|++|+.+++.+ .++.++..+|.+|++|
T Consensus       248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            345555552 2344444444555555555555544433     34444455555555555552 2455555555555555


Q ss_pred             ceEeecCCcccccC-ccccCCCCCCeeecCCCCCCCCC-cccccce-eeeEeccCCcc
Q 009079          478 QELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIP-EVTYIFV-MLQKKSINTEL  532 (544)
Q Consensus       478 ~~L~ls~n~l~~i~-~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~-~L~~l~l~~n~  532 (544)
                      +.+++..+ ++.++ ..|.++ +|+.+++.+|.+..++ ..+..++ .++.|.+-.+.
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            55555433 33332 223334 5555555555544432 2233332 34444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=8.8e-16  Score=146.66  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             CCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc-eEeecCCcccccC-ccccCCCCCCe
Q 009079          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-ELYLRRMQLREAP-TDILRLQQLRI  502 (544)
Q Consensus       425 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~i~-~~~~~~~~L~~  502 (544)
                      .|++|+.+++++|++..++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++++ .++.|+ ..|..|++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4899999999999999999999999999999999998 9999999999999999 999999 788775 56777999999


Q ss_pred             eecCCCCCCCCC-cccccceeeeEec
Q 009079          503 LDLSQNSLQSIP-EVTYIFVMLQKKS  527 (544)
Q Consensus       503 L~l~~n~l~~l~-~~l~~~~~L~~l~  527 (544)
                      +++.+|+++.++ ..+..+++|+.+.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            999999999885 5789999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=5.9e-16  Score=135.23  Aligned_cols=148  Identities=24%  Similarity=0.340  Sum_probs=125.2

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH-HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      -+.++++++.++.+|..+.  +++++|++++|.++.+... .|..+++|++|++++|+++.+....|..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4789999999999997654  4999999999999988764 578999999999999999998888899999999999999


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCccccc-CccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTE  531 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i-~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n  531 (544)
                      |.++.+.+..|+.+++|+.|++++|.++.+ |..+..+++|+.|++++|++..-....+...+++...+.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~  159 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG  159 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCC
Confidence            999999999999999999999999999965 67788899999999999999854433333333443344433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.7e-15  Score=130.92  Aligned_cols=130  Identities=24%  Similarity=0.295  Sum_probs=118.7

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      -+.++++++.++.+|..+  .++|++|++++|.++.++ ..|..+++|+.|++++|+++.++...|..+++|+.|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            468999999999998764  368999999999999887 56899999999999999999998888999999999999999


Q ss_pred             ccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCC
Q 009079          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP  514 (544)
Q Consensus       462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~  514 (544)
                      .++.+.+.+|..+++|+.|+|++|.++.+|.. +..+++|+.|++++|++.+-.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            99999999999999999999999999988775 667999999999999997543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=1e-15  Score=130.86  Aligned_cols=140  Identities=25%  Similarity=0.290  Sum_probs=125.2

Q ss_pred             hcccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCC
Q 009079          353 TRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS  430 (544)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~  430 (544)
                      ...++.++.+++++|.+.  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|+
T Consensus        20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            344578999999999998  8888888899999999999999988 6789999999999999999996666678899999


Q ss_pred             EEECCCCCCCcCCC-CccCCCCCcceEecCCcccCCCCC---CCCCCCccCceEeecCCcccccCcc
Q 009079          431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLRRMQLREAPTD  493 (544)
Q Consensus       431 ~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ls~n~l~~i~~~  493 (544)
                      +|++++|++++++. ..+..+++|+.|++++|.++....   ..+..+++|+.|++++|.+..+|..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            99999999998754 568999999999999999998876   5789999999999999999888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=3.6e-16  Score=134.68  Aligned_cols=131  Identities=20%  Similarity=0.229  Sum_probs=70.3

Q ss_pred             hcCCCCcEEEccCCCCCCCCHHHHhCC-CCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc
Q 009079          400 SSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ  478 (544)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  478 (544)
                      ..+++|++|++++|.++.++.  +..+ ++|++|++++|.+.++  ..+..+++|++|++++|.++.+.+..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            344455555555555554421  2222 2555555555555554  2355555555555555555554444345556666


Q ss_pred             eEeecCCcccccCc--cccCCCCCCeeecCCCCCCCCCcc----cccceeeeEeccCCcccc
Q 009079          479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPEV----TYIFVMLQKKSINTELVD  534 (544)
Q Consensus       479 ~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l~~~----l~~~~~L~~l~l~~n~~~  534 (544)
                      .|++++|.++.+|.  .+..+++|+.|++++|+++.+|..    +..+++|+.||+++|...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            66666666655554  455566666666666666655553    556666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=9.1e-15  Score=126.03  Aligned_cols=130  Identities=28%  Similarity=0.393  Sum_probs=88.4

Q ss_pred             ccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      .+.+++++++++.+|..+  .++|++|++++|.++.++...|..+++|++|++++|+++.++...+..+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            456666666666666433  356777777777777666665666777777777777777666666667777777777777


Q ss_pred             ccCCCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCC
Q 009079          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       462 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l  513 (544)
                      .++.+.+..+..+++|+.|++++|.++.+|... ..+++|+.|++++|++...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            777766666677777777777777777666543 4577777777777776643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=4.6e-16  Score=130.06  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             CCccEEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      ++++.|++++|.++  .+|..+..+++|+.|++++|.++.+  ..+..+++|++|++++|++.+                
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~----------------   78 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG----------------   78 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS----------------
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc----------------
Confidence            45556666665555  3555455555555555555555544  234445555555555555544                


Q ss_pred             cCCcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCCc----ccccceeeeEeccC
Q 009079          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKSIN  529 (544)
Q Consensus       458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~l~  529 (544)
                              ..+..++.+++|+.|++++|.++.++  ..+..+++|+.|++++|+++.+++    .+..+++|+.|+++
T Consensus        79 --------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           79 --------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                    33333334455555555555555432  444555555555555555555443    35555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=8.2e-16  Score=161.81  Aligned_cols=196  Identities=19%  Similarity=0.233  Sum_probs=115.2

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhh
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~   88 (544)
                      ..++.++|+++.+...+........-        .--++..++++.+.+...+..+..+++|+.|+|++|.+..+|..+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF  244 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence            34678888888877666444332000        0012233333344444456678899999999999999999988777


Q ss_pred             CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  168 (544)
                      ++++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            89999999999999999998899999999999999999999989999999999999999999999889999999999999


Q ss_pred             CCccccccchhhcCccc-cceEEcCCCcCCCCcccccCCCceeEEEccCC
Q 009079          169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (544)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  217 (544)
                      +|.++......+..... ...+++.+|.+...     ....|+.|+++.+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence            99988665554544322 23456777776431     1235666677665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.59  E-value=8e-14  Score=136.59  Aligned_cols=127  Identities=15%  Similarity=0.278  Sum_probs=81.8

Q ss_pred             CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEec
Q 009079          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l  458 (544)
                      +..|+.+.+......--..++..|+.|+.+.+. +.++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+
T Consensus       264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             CSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            445555655543322233356777788888775 3566777777888888888888653 77777778888888888888


Q ss_pred             CCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCC
Q 009079          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL  510 (544)
Q Consensus       459 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l  510 (544)
                      .++ ++.++..+|.+|++|+.+++.++... + ..+..+..|+.+.+..+.+
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC----------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCCE
Confidence            755 77788888888888888888877433 1 3456677888887766543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=1.7e-15  Score=130.33  Aligned_cols=134  Identities=22%  Similarity=0.243  Sum_probs=108.1

Q ss_pred             hccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (544)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  455 (544)
                      +..+++++.|++++|.++.++......++|+.|++++|.++++  ..+..+++|++|++++|++..++...+..+++|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3446788889999888888865444445899999999988876  34788889999999999988887666688889999


Q ss_pred             EecCCcccCCCCC-CCCCCCccCceEeecCCcccccCcc----ccCCCCCCeeecCCCCCC
Q 009079          456 LDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       456 L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~~----~~~~~~L~~L~l~~n~l~  511 (544)
                      |++++|.++.+.. ..+..+++|+.|++++|.++.+|..    +..+++|+.|++++|+..
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9999998877653 3678889999999999999888775    778999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=7e-15  Score=122.81  Aligned_cols=128  Identities=21%  Similarity=0.241  Sum_probs=103.4

Q ss_pred             ccccceeeecCCCccC--CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEE
Q 009079          355 LSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL  432 (544)
Q Consensus       355 ~~~~l~~l~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  432 (544)
                      ..+.++.+++++|.+.  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            4478999999999998  8888888899999999999999998 678999999999999999999667777889999999


Q ss_pred             ECCCCCCCcCCC-CccCCCCCcceEecCCcccCCCCC---CCCCCCccCceEeec
Q 009079          433 KLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLR  483 (544)
Q Consensus       433 ~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ls  483 (544)
                      ++++|++++++. ..+..+++|+.|++++|.++...+   ..++.+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999988642 446667777777777776666544   345555666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=4.8e-14  Score=121.49  Aligned_cols=131  Identities=27%  Similarity=0.444  Sum_probs=118.8

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChh-hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  435 (544)
                      +..+.++++++++..+|..+.  +++++|++++|.++.++.. +..+++|++|++++|.++.+++..|..+++|++|+++
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356789999999999987663  6899999999999997764 6899999999999999999988888999999999999


Q ss_pred             CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE  489 (544)
Q Consensus       436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  489 (544)
                      +|+++.++...+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999999988888999999999999999999988888999999999999998874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.48  E-value=4.7e-14  Score=148.43  Aligned_cols=176  Identities=17%  Similarity=0.142  Sum_probs=101.3

Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEE-----EcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCE
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKL-----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC  431 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L-----~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~  431 (544)
                      +.++.+.+.++.+..++..+.....|..+     ++..+.+...+..+..++.|+.|+|++|.+..++... ..+++|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCE
Confidence            44677777777776655544333233222     2222333334556778888888888888888776654 47888888


Q ss_pred             EECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC
Q 009079          432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       432 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~  511 (544)
                      |+|++|.++.++. .+..+++|+.|+|++|.++.+ +..|+.+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++
T Consensus       252 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            8888888887663 477888888888888888855 66788888888888888888888888888888888888888888


Q ss_pred             CC-Cccccccee-eeEeccCCccccc
Q 009079          512 SI-PEVTYIFVM-LQKKSINTELVDK  535 (544)
Q Consensus       512 ~l-~~~l~~~~~-L~~l~l~~n~~~~  535 (544)
                      .. |..+..... +..+++++|.+.+
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~  355 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEI  355 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCChHHHhhcchhhhHHhhccCcccC
Confidence            43 554443322 2346777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.47  E-value=6.7e-12  Score=122.33  Aligned_cols=105  Identities=18%  Similarity=0.271  Sum_probs=58.7

Q ss_pred             cCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079          378 EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (544)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  456 (544)
                      .+..|+.+.+..+ ++.+. .++..+.+|+.+.+.. .++.+....|.+|.+|+.+.+.++.+..++..+|.+|++|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3445555555543 33322 2355566666666643 3445555555666666666666555666655566666666666


Q ss_pred             ecCCcccCCCCCCCCCCCccCceEeecCC
Q 009079          457 DLSYNIASLPENPPFSSLPHLQELYLRRM  485 (544)
Q Consensus       457 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  485 (544)
                      ++.++ ++.++..+|.+|.+|+.+.+..+
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            66543 55555566666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=3.8e-15  Score=130.96  Aligned_cols=143  Identities=27%  Similarity=0.298  Sum_probs=112.8

Q ss_pred             CccEEecccC--cccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCC
Q 009079           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (544)
Q Consensus        46 ~L~~L~l~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~  123 (544)
                      .++...+.+.  .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            4555555554  45567778999999999999999988888 88889999999999999988888888889999999999


Q ss_pred             CCCccCCcccccCcCCCEEEcCCCccccCCc--cccCCCCceEEEecCCccccccc----------hhhcCccccceEE
Q 009079          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSN----------NLIASWTMLTELI  190 (544)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~L~~L~  190 (544)
                      |.++.++ .+..+++|++|++++|.+..++.  .+..+++|++|++++|++.....          ..+..+++|+.|+
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9988876 67888899999999998887654  67788899999998888764422          2245555666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=5.4e-16  Score=136.37  Aligned_cols=150  Identities=24%  Similarity=0.268  Sum_probs=102.8

Q ss_pred             ccEEEcCCC--CCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079          382 ITKLDLSRN--SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       382 L~~L~l~~~--~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      +....+.+.  .++.+|..+..+++|++|++++|.++.++  .+..+++|++|++++|++..++. .+..+++|+.|+++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECc
Confidence            334444433  34455556777777777777777777765  46677777777777777776653 34556777777777


Q ss_pred             CcccCCCCCCCCCCCccCceEeecCCcccccCc--cccCCCCCCeeecCCCCCCCC-Cc----------ccccceeeeEe
Q 009079          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSI-PE----------VTYIFVMLQKK  526 (544)
Q Consensus       460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l-~~----------~l~~~~~L~~l  526 (544)
                      +|.++.+.  .+..+++|+.|++++|.++.++.  .+..+++|+.|++++|+++.. |.          .+..+++|+.|
T Consensus       102 ~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  179 (198)
T 1ds9_A          102 YNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred             CCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence            77777653  46677888888888888876653  566788888888888887644 22          26778888888


Q ss_pred             ccCCcccccccc
Q 009079          527 SINTELVDKNQQ  538 (544)
Q Consensus       527 ~l~~n~~~~~~~  538 (544)
                      |  ++++...+.
T Consensus       180 d--~~~i~~~e~  189 (198)
T 1ds9_A          180 D--GMPVDVDER  189 (198)
T ss_dssp             C--CGGGTTTTT
T ss_pred             C--CcccCHHHH
Confidence            7  777766554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.44  E-value=1.4e-11  Score=120.10  Aligned_cols=98  Identities=16%  Similarity=0.310  Sum_probs=80.4

Q ss_pred             ccCCCccEEEcCCCCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcce
Q 009079          377 WEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (544)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~  455 (544)
                      ..+.+++.+.+... ++.++ .+|..|++|+.+.+.++.++.+...+|.+|.+|+.+.+..+ +..+...+|.+|++|+.
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  337 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST  337 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence            34667888888653 44443 35889999999999998999998889999999999999754 88888889999999999


Q ss_pred             EecCCcccCCCCCCCCCCCccC
Q 009079          456 LDLSYNIASLPENPPFSSLPHL  477 (544)
Q Consensus       456 L~l~~n~l~~~~~~~~~~l~~L  477 (544)
                      +.+..+ ++.++..+|.++..+
T Consensus       338 i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          338 ISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CCCCTT-CCEECTTTTTTSSCC
T ss_pred             EEECCc-cCEEchhHhhCCCCC
Confidence            999865 788888889887543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=1e-12  Score=111.93  Aligned_cols=106  Identities=26%  Similarity=0.362  Sum_probs=75.8

Q ss_pred             CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      ..+.++++++.++.+|..+  .++|++|++++|.++.+.+..|..+++|++|++++|++..++...|..+++|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3456777777777776544  36777777777777777666677777777777777777777666667777777777777


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCccc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      |+++.+.+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7777776666777777777777777665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1.1e-12  Score=112.19  Aligned_cols=107  Identities=22%  Similarity=0.322  Sum_probs=72.4

Q ss_pred             cEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcc
Q 009079          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (544)
Q Consensus       383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~  462 (544)
                      +.++++++.++.+|..+.  ++|+.|++++|.++.+.+..|..+++|++|++++|+++.++...|..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777766443  667777777777777666666677777777777777777666656666777777777776


Q ss_pred             cCCCCCCCCCCCccCceEeecCCcccccC
Q 009079          463 ASLPENPPFSSLPHLQELYLRRMQLREAP  491 (544)
Q Consensus       463 l~~~~~~~~~~l~~L~~L~ls~n~l~~i~  491 (544)
                      ++.+.+..|..+++|+.|++++|.+...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            66666666666666777777666665443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=7.3e-13  Score=113.22  Aligned_cols=108  Identities=20%  Similarity=0.220  Sum_probs=95.9

Q ss_pred             CcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecC
Q 009079          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (544)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  484 (544)
                      -+.++++++.++.++...   .++|++|++++|++..++...|..+++|++|++++|+++.+.+..|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            378999999998887642   38999999999999998888899999999999999999999888889999999999999


Q ss_pred             CcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079          485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       485 n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      |.++.+|.. +..+++|+.|++++|++...+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999988776 7779999999999999997765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=9.7e-13  Score=112.10  Aligned_cols=109  Identities=24%  Similarity=0.267  Sum_probs=93.1

Q ss_pred             CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeec
Q 009079          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (544)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  483 (544)
                      ..+.++++++.++.++...   .++|+.|++++|++..+....|..+++|++|++++|+++.+.+..|..+++|+.|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999998877532   3889999999999999887788899999999999999999888888999999999999


Q ss_pred             CCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079          484 RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       484 ~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      +|.++.+|.. +..+++|+.|++++|+++..+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999988764 6779999999999999886553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=6.3e-14  Score=135.17  Aligned_cols=182  Identities=16%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             cccccceeeecCCCccCCC-----chhhcc-CCCccEEEcCCCCCCC--CChhhhcCCCCcEEEccCCCCCCCCHHHH--
Q 009079          354 RLSVTSKELSLEGMNLSAI-----PSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAIL--  423 (544)
Q Consensus       354 ~~~~~l~~l~l~~~~~~~i-----~~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l--  423 (544)
                      .....++.+++++|.+...     ...+.. ++.|++|++++|.++.  +......+++|++|++++|.+++.....+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            3446789999999998742     222222 3689999999999876  22223456789999999999987554444  


Q ss_pred             ---hCCCCCCEEECCCCCCCcCCC----CccCCCCCcceEecCCcccCCCC----CCCCCCCccCceEeecCCcccc---
Q 009079          424 ---TSLSSLSCLKLDNNPLRQVPS----DGFKDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLRE---  489 (544)
Q Consensus       424 ---~~~~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~---  489 (544)
                         ...++|++|++++|.+++...    ..+..+++|++|++++|.+++.+    ...+..+++|+.|+|++|.|+.   
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               346899999999999976332    23477899999999999887654    3345667899999999999983   


Q ss_pred             --cCccccCCCCCCeeecCCCCCCC-----CCcccccce--eeeEec--cCCcccccc
Q 009079          490 --APTDILRLQQLRILDLSQNSLQS-----IPEVTYIFV--MLQKKS--INTELVDKN  536 (544)
Q Consensus       490 --i~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~~~--~L~~l~--l~~n~~~~~  536 (544)
                        +...+..+++|++|++++|+++.     +.+ +....  .|+.+.  +.++.++..
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~-~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLRD-LGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH-CC------CEEECCCC----CHHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH-HhcCCCccchhhHhhhcCCccCHH
Confidence              34455668999999999999983     222 12222  278888  777777643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.2e-13  Score=133.27  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=113.9

Q ss_pred             CCCccEEEcCCCCCCC-----CChhhh-cCCCCcEEEccCCCCCCCCHHH-HhCCCCCCEEECCCCCCCcCCCCcc----
Q 009079          379 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF----  447 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~-----l~~~~~-~~~~L~~L~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n~i~~~~~~~l----  447 (544)
                      .+.+++|++++|.++.     +...+. .+++|++|++++|.+++..... ...+++|++|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4578899999998876     222222 2368999999999887643322 2345788999999998876443333    


Q ss_pred             -CCCCCcceEecCCcccCCCCCCCC----CCCccCceEeecCCcccc-----cCccccCCCCCCeeecCCCCCCC-----
Q 009079          448 -KDIPMLQILDLSYNIASLPENPPF----SSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS-----  512 (544)
Q Consensus       448 -~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~ls~n~l~~-----i~~~~~~~~~L~~L~l~~n~l~~-----  512 (544)
                       ...++|+.|++++|.++..+...+    ..+++|+.|+|++|.++.     ++..+..+++|+.|++++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             356789999999998776543333    567889999999998873     34556677889999999999883     


Q ss_pred             CCcccccceeeeEeccCCccccc
Q 009079          513 IPEVTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       513 l~~~l~~~~~L~~l~l~~n~~~~  535 (544)
                      ++..+..+++|+.|++++|.+..
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            44556677889999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.4e-10  Score=111.44  Aligned_cols=105  Identities=27%  Similarity=0.328  Sum_probs=93.8

Q ss_pred             cEEEcCCC-CCCCCChhhhcCCCCcEEEccC-CCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCC
Q 009079          383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (544)
Q Consensus       383 ~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~  460 (544)
                      ..++++++ .++.+|. +..+++|++|+|++ |.++.++...|..+++|+.|+|++|+++.++...|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45788888 8999998 99999999999996 999999888899999999999999999998888899999999999999


Q ss_pred             cccCCCCCCCCCCCccCceEeecCCcccc
Q 009079          461 NIASLPENPPFSSLPHLQELYLRRMQLRE  489 (544)
Q Consensus       461 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  489 (544)
                      |+++.+.+..|..++ |+.|+|++|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999998888787766 9999999998873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.8e-10  Score=110.76  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=94.2

Q ss_pred             eeeecCCC-ccCCCchhhccCCCccEEEcCC-CCCCCCC-hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          360 KELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       360 ~~l~l~~~-~~~~i~~~~~~~~~L~~L~l~~-~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                      ..++++++ .+..+|. +..+.+|+.|+|++ |.++.++ ..|..+++|+.|+|++|+++.+++..|..+++|+.|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            56788888 8999999 88889999999996 9999977 4689999999999999999999988899999999999999


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCC
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~  466 (544)
                      |++..++...+..++ |+.|++.+|.+...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            999999888777776 99999999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=1e-09  Score=104.81  Aligned_cols=171  Identities=13%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             ccceeeecCCCccC----------CCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHh--
Q 009079          357 VTSKELSLEGMNLS----------AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT--  424 (544)
Q Consensus       357 ~~l~~l~l~~~~~~----------~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~--  424 (544)
                      ++|+.|.+.+....          .+...+..+|.|++|.++++.-..++. + ..++|++|++..|.++......+.  
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            46777776554221          233444556778888877663122333 2 367788888777776653333333  


Q ss_pred             CCCCCCEEECCCC--C-CCc-----CCCCcc--CCCCCcceEecCCcccCCCCCCCC---CCCccCceEeecCCcccc--
Q 009079          425 SLSSLSCLKLDNN--P-LRQ-----VPSDGF--KDIPMLQILDLSYNIASLPENPPF---SSLPHLQELYLRRMQLRE--  489 (544)
Q Consensus       425 ~~~~L~~L~l~~n--~-i~~-----~~~~~l--~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~ls~n~l~~--  489 (544)
                      .+|+|++|+|+.+  . ..+     +. ..+  ..+|+|+.|++.+|.+.+.....+   ..+++|+.|+|+.|.++.  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence            5778888777421  1 111     11 112  246777888777776553221111   246777788887777763  


Q ss_pred             ---cCccccCCCCCCeeecCCCCCCCC-Cccccc-ceeeeEeccCCcc
Q 009079          490 ---APTDILRLQQLRILDLSQNSLQSI-PEVTYI-FVMLQKKSINTEL  532 (544)
Q Consensus       490 ---i~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~-~~~L~~l~l~~n~  532 (544)
                         ++..+..+++|+.|++++|.++.- ...+.. +  ...++++++.
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence               334445577778888877776621 111111 1  2456777766

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=7.2e-10  Score=105.83  Aligned_cols=150  Identities=16%  Similarity=0.261  Sum_probs=87.8

Q ss_pred             ccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-CChhh--hcCCCCcEEEccCC--C-CCC-----CCHHHH
Q 009079          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPEL--SSCASLQTLILSRN--K-IKD-----WPDAIL  423 (544)
Q Consensus       355 ~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l~~~~--~~~~~L~~L~l~~~--~-l~~-----~~~~~l  423 (544)
                      ..+.|++|.++++.-..++. + ..++|+.|++..|.++. ....+  ..+|+|++|+|+.+  . ..+     +.. .+
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l  246 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LF  246 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GS
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HH
Confidence            34578888887763233333 2 36788888888777654 11122  36788888887531  1 111     111 12


Q ss_pred             --hCCCCCCEEECCCCCCCcCCCCcc---CCCCCcceEecCCcccCCCCCCC----CCCCccCceEeecCCccccc-Ccc
Q 009079          424 --TSLSSLSCLKLDNNPLRQVPSDGF---KDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYLRRMQLREA-PTD  493 (544)
Q Consensus       424 --~~~~~L~~L~l~~n~i~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~ls~n~l~~i-~~~  493 (544)
                        ..+|+|++|++.+|.+.+.....+   ..+++|+.|+++.|.+.+.+...    +..+++|+.|++++|.++.- -..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              247888888888888764211111   34678888888888776644322    23467888888888877621 111


Q ss_pred             ccC-CCCCCeeecCCCC
Q 009079          494 ILR-LQQLRILDLSQNS  509 (544)
Q Consensus       494 ~~~-~~~L~~L~l~~n~  509 (544)
                      +.. +  ...++++.++
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            221 1  3557777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=4.2e-09  Score=90.65  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=76.3

Q ss_pred             ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCcccc-----CC
Q 009079           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IP  107 (544)
Q Consensus        44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~-----l~  107 (544)
                      .+.|++|++++| .+.     .+...+...++|++|++++|.+.     .+.+++...++|++|++++|.++.     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            567888888887 775     34556777788888888888776     234566667788888888887772     45


Q ss_pred             ccccccCCccEEEc--CCCCCcc-----CCcccccCcCCCEEEcCCCccc
Q 009079          108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (544)
Q Consensus       108 ~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (544)
                      ..+...++|++|++  ++|.+..     +...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56677778888888  7777762     3345566678888888887664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=1.1e-08  Score=88.14  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=87.3

Q ss_pred             chhHhhcCCCCCCEEEcCCC-CCC-----CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc
Q 009079           59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (544)
Q Consensus        59 ~~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~  127 (544)
                      .+...+...+.|++|++++| .+.     .+..++...++|++|++++|.++     .+...+...++|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            34567788888999999888 777     34456777888999999988887     24455667788999999988887


Q ss_pred             c-----CCcccccCcCCCEEEc--CCCcccc-----CCccccCCCCceEEEecCCcccc
Q 009079          128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV  174 (544)
Q Consensus       128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~  174 (544)
                      .     +...+...++|++|++  ++|.+..     +.+.+...++|++|++++|.+..
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            3     4456677788999999  7787762     44556667889999998887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=6.3e-09  Score=86.87  Aligned_cols=82  Identities=9%  Similarity=0.074  Sum_probs=37.9

Q ss_pred             CCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCC----CCcceEecCCc-ccCCCCCCCCCCCccC
Q 009079          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDI----PMLQILDLSYN-IASLPENPPFSSLPHL  477 (544)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~----~~L~~L~l~~n-~l~~~~~~~~~~l~~L  477 (544)
                      .|++||+++|.+++.....+..|++|++|+|++|. |++.....+..+    ++|++|++++| ++++.+...++.+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554444444555555555555553 443222222221    24444444444 2444443444445555


Q ss_pred             ceEeecCC
Q 009079          478 QELYLRRM  485 (544)
Q Consensus       478 ~~L~ls~n  485 (544)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=2.7e-07  Score=76.98  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             CCCccEEEcCCCCCCCC-ChhhhcCCCCcEEEccCC-CCCCCCHHHHhCC----CCCCEEECCCCC-CCcCCCCccCCCC
Q 009079          379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP  451 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~----~~L~~L~l~~n~-i~~~~~~~l~~~~  451 (544)
                      ...|++||+++|.+++. ...+..|++|++|+|++| .+++.....+..+    ++|++|++++|. |++.....+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34799999999998762 234678999999999999 5888666667764    589999999986 8875556677899


Q ss_pred             CcceEecCCcc-cCC
Q 009079          452 MLQILDLSYNI-ASL  465 (544)
Q Consensus       452 ~L~~L~l~~n~-l~~  465 (544)
                      +|+.|++++|. +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999883 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.12  E-value=1.9e-06  Score=77.72  Aligned_cols=62  Identities=29%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             cCCCCCCEEEcCCCCCCCcc---hhhhCCCCccEEEccCCccccCCccccccC--CccEEEcCCCCCc
Q 009079           65 RNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQLK  127 (544)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~  127 (544)
                      .++++|++|+|++|.++.++   ..+..+++|++|+|++|.++.+ ..+..+.  +|++|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            45677777777777766543   4455677777777777776655 2233333  6677777766665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=2.3e-06  Score=77.19  Aligned_cols=76  Identities=25%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             ecCccEEecccCcccchh---HhhcCCCCCCEEEcCCCCCCCcchhhhCCC--CccEEEccCCccc-cCCc-------cc
Q 009079           44 AVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPAAIGELH--MLKSLDVSFNSIM-KIPD-------EI  110 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~l~~~~l~-~l~~-------~~  110 (544)
                      +++|+.|++++|.+..++   ..+..+++|+.|+|++|.+..+ ..+..+.  +|++|++++|.+. .+|+       .+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence            578999999999998654   5678999999999999999977 3344444  9999999999987 3442       35


Q ss_pred             cccCCccEEE
Q 009079          111 GSATALVKFD  120 (544)
Q Consensus       111 ~~~~~L~~L~  120 (544)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6778888876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.01  E-value=6.1e-06  Score=70.23  Aligned_cols=105  Identities=16%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCccc-----cCC
Q 009079           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (544)
Q Consensus        44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~  107 (544)
                      .+.|++|+++++ .+.     .+.+++...+.|++|+|++|.+.     .+.+++...+.|++|+|+.|.|+     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            356777777764 554     24456666777777777777766     44456666677777777777776     233


Q ss_pred             ccccccCCccEEEcCCCC---Cc-----cCCcccccCcCCCEEEcCCCc
Q 009079          108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNC  148 (544)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~  148 (544)
                      +.+...+.|++|+++++.   +.     .+...+..-+.|++|+++.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            445566667777776542   22     222344556677777776554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.85  E-value=2e-05  Score=67.02  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=80.5

Q ss_pred             hhHhhcCCCCCCEEEcCCC-CCC-----CcchhhhCCCCccEEEccCCccc-----cCCccccccCCccEEEcCCCCCc-
Q 009079           60 LKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK-  127 (544)
Q Consensus        60 ~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~~~-  127 (544)
                      +...+.+-+.|++|+++++ .+.     .+.+++.....|+.|+|++|.++     .+...+...+.|++|++++|.+. 
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            4455677788888998875 666     34567777888899999888887     34455677788899999888887 


Q ss_pred             ----cCCcccccCcCCCEEEcCCCcc---c-----cCCccccCCCCceEEEecCCccc
Q 009079          128 ----ELPSSLGRCLNLSDFKASNNCI---T-----SLPEDLADCSKMSKLDVEGNKLT  173 (544)
Q Consensus       128 ----~~~~~~~~~~~L~~L~l~~~~~---~-----~~~~~~~~~~~L~~L~l~~~~~~  173 (544)
                          .+...+..-+.|++|+++++..   .     .+.+.+...++|+.|+++.+.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                3334555667788888876532   2     23344566678888888766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.00049  Score=54.61  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             eEecCCcccC--CCCCCCCCCCccCceEeecCCcccccCccc-cCCCCCCeeecCCCCCCCC
Q 009079          455 ILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       455 ~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~-~~~~~L~~L~l~~n~l~~l  513 (544)
                      .++.+++.++  .+.. .  -.++|+.|+|++|.|+.+|... ..+++|+.|+|++|++..-
T Consensus        12 ~v~Cs~~~L~~~~vP~-~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-A--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCS-C--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCC-C--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5666666665  3321 1  1245677777777777665543 3466777777777766643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.67  E-value=0.0027  Score=50.28  Aligned_cols=55  Identities=27%  Similarity=0.500  Sum_probs=36.6

Q ss_pred             EEEcCCCCCC--CCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCC
Q 009079          384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (544)
Q Consensus       384 ~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~  440 (544)
                      .++.++..++  .+|..+  .++|++|+|++|.|+.++...|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666666  566432  245777777777777777666777777777777777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.39  E-value=0.075  Score=39.47  Aligned_cols=48  Identities=19%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCC
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n  485 (544)
                      -.++.+...+|.+|.+|+.+.|..+ ++.++..+|.+|.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455566666666666666666654 66666666666666666666554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.70  E-value=0.23  Score=36.83  Aligned_cols=49  Identities=10%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             CCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCc
Q 009079          412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (544)
Q Consensus       412 ~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n  461 (544)
                      +..++.+...+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            34567777777888888888888653 77787788888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	544
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 3e-17
 Identities = 64/396 (16%), Positives = 132/396 (33%), Gaps = 32/396 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L       +    +++  +   +L  + +L      I  I D +     L + + S+NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ 77

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           L ++   L     L D   +NN I  +       +             +     + +   
Sbjct: 78  LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L     + + ++ +              +   + L+  +++      +      +     
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----- 191

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L KL+ L +L   +NQ+ +         L  L L+ N L      +  +T L  L L
Sbjct: 192 --VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDL 248

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
             N +    S+L        L  L+                 +  ++    +T+      
Sbjct: 249 ANNQI----SNLAPLSGLTKLTELK------------LGANQISNISPLAGLTALTNLEL 292

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             N     S I     +T L L  N+I ++ P +SS   LQ L  + NK+ D     L +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS--LAN 349

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           L++++ L   +N +  +      ++  +  L L+  
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 67/339 (19%), Positives = 126/339 (37%), Gaps = 23/339 (6%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           +T L A +  +  + + +  L+ L +++   N++  I   +     L +  M NN ++ +
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 103

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                  +  G    ++       ++       +   SN     +              L
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 159

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS------ 359
           +     T    L N  T   L    +++ +       T  E LI    ++S  +      
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 360 --KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
              ELSL G  L  I + +     +T LDL+ N I  L P LS    L  L L  N+I +
Sbjct: 220 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN 277

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
                L  L++L+ L+L+ N           ++  L  L L +N  ++ +  P SSL  L
Sbjct: 278 ISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFN--NISDISPVSSLTKL 331

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
           Q L+    ++ +  + +  L  +  L    N +  +  +
Sbjct: 332 QRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 54/317 (17%), Positives = 107/317 (33%), Gaps = 14/317 (4%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  ++  L +  +    S  +    +         + ++   +  L+ L  ++  +NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           L +        +L  + ++NN ++ + P           L             +      
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRL----SVTSKELSLEGMNLSAIPSEIWEAG 380
            L               S  +       T L    ++T+ E      N  +  S + +  
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L  + N I ++ P      +L  L L+ N++KD     L SL++L+ L L NN + 
Sbjct: 198 NLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
            +       +  L  L L  N   +    P + L              E  + I  L+ L
Sbjct: 255 NLAP--LSGLTKLTELKLGAN--QISNISPLAGLTA-LTNLELNENQLEDISPISNLKNL 309

Query: 501 RILDLSQNSLQSIPEVT 517
             L L  N++  I  V+
Sbjct: 310 TYLTLYFNNISDISPVS 326

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 3e-17
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 19/262 (7%)

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125
           P   +L++ +NK++E+       L  L +L +  N I KI P        L +   S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           LKELP  + +   L + +   N IT + + + +      +   G      S     ++  
Sbjct: 91  LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 186 LTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNA 241
           + +L     +   +  +P+  G    L  L L  N+I     +S+ G  +LA+  +  N+
Sbjct: 149 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 242 -LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE------ 293
             +     L     L  L L++N+L +          + V+ L NN++S +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 294 -IGKMTTLRKLLLTGNPLRTLR 314
              K  +   + L  NP++   
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 1e-16
 Identities = 53/305 (17%), Positives = 119/305 (39%), Gaps = 32/305 (10%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETI 203
           S+  +  +P+DL      + LD++ NK+T + +    +   L  LI   N ++ + P   
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L RL L +N++  +P  +       E  +  N ++ +       L+++  ++L +
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 263 NQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           N LK   +E        +LS + +++ +++ +P  +    +L +L L GN +  + ++ +
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL 191

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
            G        L        D+ +      L  +                 L  +P  + +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN-----------NNKLVKVPGGLAD 240

Query: 379 AGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKDW--PDAILTSLSSL 429
              I  + L  N+I  +           +  AS   + L  N ++ W    +    +   
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 430 SCLKL 434
           + ++L
Sbjct: 301 AAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 2e-13
 Identities = 59/299 (19%), Positives = 110/299 (36%), Gaps = 27/299 (9%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLS 283
             C C L      +  L  +P +L        LDL +N++ E      +    L  L L 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 284 NNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           NN +S + P     +  L +L L+ N L+ L   +              R+ ENE ++  
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ-------ELRVHENEITKVR 116

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
            +  + +     + + +  L   G+             +++ + ++  +I  +P  L   
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMKKLSYIRIADTNITTIPQGLPP- 171

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
            SL  L L  NKI     A L  L++L+ L L  N +  V +    + P L+ L L+ N 
Sbjct: 172 -SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN-NN 229

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-------ILRLQQLRILDLSQNSLQSIP 514
             +      +   ++Q +YL    +    ++         +      + L  N +Q   
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 55/325 (16%), Positives = 110/325 (33%), Gaps = 88/325 (27%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-------------------- 110
            L + +NK+S++ P A   L  L+ L +S N + ++P+++                    
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 111 -----GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                     +               +      LS  + ++  IT++P+ L     +++L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL 176

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNL------------------------LNGMPE 201
            ++GNK+T +    +     L +L  S N                         L  +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
            +     +  + LH N I +I S+                    P    K +    + L 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSND----------------FCPPGYNTKKASYSGVSLF 280

Query: 262 SNQLKEYCVEACQLR----LSVLDL 282
           SN ++ + ++    R     + + L
Sbjct: 281 SNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 52/280 (18%), Positives = 105/280 (37%), Gaps = 19/280 (6%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR----SSLVNGPTPA 324
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++     +L N  T  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 325 LLKYLRSRLPENEDSEASTTKE------DLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
           L+    S++     +     +        L  +  ++  T +EL +    ++ +   ++ 
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

Query: 379 AGEITKL----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
                 +         S             L  + ++   I   P  +  SL+ L    L
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---L 178

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           D N + +V +   K +  L  L LS+N  S  +N   ++ PHL+EL+L   +L + P  +
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

Query: 495 LRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVD 534
              + ++++ L  N++ +I    +       K  +   V 
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 278

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 4e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +        G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 41/219 (18%), Positives = 65/219 (29%), Gaps = 48/219 (21%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK-D 417
            E++ +  NL+A+P ++ +  + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 418 WPDAILTSLSSLSCLKL------------------------------------------- 434
             D  L  L +L                                                
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 435 -DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
              N L+ +P       P L+ L L+ N  +       + L +L  L L+   L   P  
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 494 ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTEL 532
                 L    L  N      E+ Y    LQ  + N  +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYV 229

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 13/213 (6%)

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL 260
            +  ++  + ++  +  + ++P  +         ++  N L       L   ++L  L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L +  V+     L  LDLS+N L  LP     +  L  L ++ N L +L    + G
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
                  YL+    +       T    L  ++                       +    
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA----------NNNLTELPAGLLNGLE 172

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRN 413
            +  L L  NS+  +P        L    L  N
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
           E+ +     +++  + ++  LPP+L        L LS N +  +  A L   + L+ L L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 435 DNNP 438
           D   
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 17/205 (8%)

Query: 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339
           ++    +L+ LPP++ K      L L+ N L T   + +          L     +  + 
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMP-----YTRLTQLNLDRAEL 67

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                   L  + T     ++  SL  +  +     + +        L   +++ L    
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
                        N++K  P  +LT    L  L L NN L ++P+     +  L  L L 
Sbjct: 128 ELYLK-------GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 460 YN-IASLPENPPFSSLPHLQELYLR 483
            N + ++P+   F     L   +L 
Sbjct: 181 ENSLYTIPKG--FFGSHLLPFAFLH 203

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
           + S   ++C   D   L  +P D  KD     IL LS N+              L +L L
Sbjct: 9   VASHLEVNC---DKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 483 RRMQ 486
            R +
Sbjct: 63  DRAE 66

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L     I+   L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 386 DLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           DL  N I   LP  L+    L +L +S N +         +L         NN  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNK 414
           +P  + +   +  L++S N++    P+  +         + NK
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 58/332 (17%), Positives = 97/332 (29%), Gaps = 30/332 (9%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             EL  +   L+ +PE    L  L       N +  +P       SL    + NN L AL
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                 L  L      SN   E   E        +   +N+     P++           
Sbjct: 94  S----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                     +L              +LP+   S  S    + I            L+  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             + + + +       +  L++  N + +LP    S   L       + + + P      
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP------ 263

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
                      N             P L+ L++S N +  LP     +  P L+ L    
Sbjct: 264 -----PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASF 313

Query: 485 MQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
             L E P      Q L+ L +  N L+  P++
Sbjct: 314 NHLAEVPEL---PQNLKQLHVEYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL++    L  +P+       + +L  S N + E+P       +L+ L +  N ++++P
Sbjct: 287 EELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP 340

Query: 420 DAILTSLSSLSCLKLDN 436
           D       S+  L++++
Sbjct: 341 D----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             SL E  + NN L  LPA   +L +L       N L E  V      L  L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAE--VPELPQNLKQLHVEYNPLR 337

Query: 289 GLPPEIGKMTTLR 301
             P     +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 + +L++S N + ELP        L+ LI S N + + P+       +L  L ++
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE----LPQNLKQLHVE 332

Query: 436 NNPLRQVPSDGFKDIPMLQI 455
            NPLR+ P D  + +  L++
Sbjct: 333 YNPLREFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 49/360 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 269 CVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
            +  C  R    L+L+N  LS LP        L  L+ + N L  L     +
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS 79

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 53/254 (20%), Positives = 85/254 (33%), Gaps = 13/254 (5%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                   L  +P  I      +++ L GN +  + ++          + L      +  
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                               S    L  ++    P+     G +  L L R  +QEL P 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 399 LSSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
           L    A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
           L  N  +      F  L  L  LYL            +  L+ L+ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 517 TYIFVMLQKKSINT 530
             ++  LQK   ++
Sbjct: 244 RPLWAWLQKFRGSS 257

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 50/258 (19%), Positives = 76/258 (29%), Gaps = 32/258 (12%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
              + L  N +S +P    +             L  L              +    L E 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN---------LTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
            D   +     +             L L+   L  +   ++     +  L L  N++Q L
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 396 PPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           P +      +L  L L  N+I   P+     L SL  L L  N +  V    F+D+  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLR-------------RMQLREAPTDI------- 494
            L L  N  S       + L  LQ L L                 L++            
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 495 -LRLQQLRILDLSQNSLQ 511
             RL    +  L+ N LQ
Sbjct: 265 PQRLAGRDLKRLAANDLQ 282

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.0 bits (124), Expect = 7e-09
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L L+   +  L   L     +  L LS N+++  P A+  +L  L  L+  +N L  V  
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG 60

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
               ++P LQ L L  N +       P  S P L  L L+   L +      RL ++
Sbjct: 61  --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L  S N +++  
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--FSSLP 475
                    L  L L NN L+Q  +       P L +L+L  N +             LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 476 HLQEL 480
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 40/157 (25%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+           
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------- 50

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP- 397
                                        N       +     + +L L  N +Q+    
Sbjct: 51  ---------------------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 398 -ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
             L SC  L  L L  N +             L  + 
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LDL    I  +    ++      +  S N+I+         L  L  L ++NN + ++  
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

Query: 445 DGFKDIPMLQILDLS-YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQ 499
              + +P L  L L+  ++  L +  P +SL  L  L + R  +          I ++ Q
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 500 LRILDLSQNSLQ 511
           +R+LD  +  L+
Sbjct: 141 VRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL L G  +  I +      +   +D S N I++L         L+TL+++ N+I    
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGF----KDIPMLQILDLSYNIASLPENPPFSSLP 475
           + +  +L  L+ L L NN L ++         K +  L IL                 +P
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 476 HLQELYLRRMQLRE 489
            ++ L  ++++L+E
Sbjct: 140 QVRVLDFQKVKLKE 153

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 467 ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           +   +++    +EL LR  ++         L Q   +D S N ++ + 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPEDLADCSKM--SKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D    N       + L                   +
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA 233
             N    +  +    +    +     +    L +L  L+L+ N+I  + P S     SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPP 292
              + +N  +           L    L+    +  C    ++R + + DL ++       
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 293 EI 294
             
Sbjct: 188 NS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +D +   L  +P +I       +LLL  N L  + S  + G  P L+K 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
              R         +      I          KE+                  ++  L+L 
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---------SNKMFLGLHQLKTLNLY 110

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N I  + P       SL +L    +   +    +      L    L+    R       
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR---CGAP 166

Query: 448 KDIPMLQILDLSYN 461
             +  +QI DL ++
Sbjct: 167 SKVRDVQIKDLPHS 180

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 25/245 (10%), Positives = 66/245 (26%), Gaps = 10/245 (4%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G        +   
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                      +    +         +          +    +           L     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                ++         I +  +      +  +       L L+ N ++++ +  F    +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESV-----ILWLNKNGIQEIHNCAFNGTQL 178

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQ 511
            ++     N      N  F        L + R ++   P+  L  L++LR       +L+
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

Query: 512 SIPEV 516
            +P +
Sbjct: 237 KLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 38/259 (14%), Positives = 73/259 (28%), Gaps = 32/259 (12%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
           CS   F    + ++ +P++L +                            L      L  
Sbjct: 8   CSNRVFLCQESKVTEIPSDLPR------------------------NAIELRFVLTKLRV 43

Query: 290 LPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
           +          L K+ ++ N +  +  + V    P L +    +            +   
Sbjct: 44  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 103

Query: 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408
                 +S T  +                +   +   D       E    +        L
Sbjct: 104 NLQYLLISNTGIK-----HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 158

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
            L++N I++  +              DNN L ++P+D F       ILD+S   I SLP 
Sbjct: 159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218

Query: 468 NPPFSSLPHLQELYLRRMQ 486
                +L  L+      ++
Sbjct: 219 Y-GLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 44/339 (12%), Positives = 89/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE------IGKMTTLR 301
               L+        +  + +   +   + L  L L  N +              KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 354 RLSVTSKELSLEGM---NLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASL 405
           R S+  K L L+ +   +  ++ + + E   + ++ LS N+I     + L   ++S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +    S        D I  +L  L    L    L  
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLR 440
             ++    + +   L    S++ ++LS N I      W    + S   L   +  +    
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 441 QVPSDGFKDIPML 453
           +V  +  + + +L
Sbjct: 73  RVKDEIPEALRLL 85

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 10/213 (4%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L+    +    + + +   +A    ++ L      ++ +   +  +  L  L L  N + 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 312 TLRS-----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            L        +             S +   +  +        IT  T L+  S    L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
                            +     N+       L++ + L TL    NKI D     L SL
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
            +L  + L NN +  V      +   L I+ L+
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           G    LDL         P+L +      L    +        I  ++  L  L L NN L
Sbjct: 22  GSQQALDLKGLRS---DPDLVAQNIDVVLNRRSSMAATLRI-IEENIPELLSLNLSNNRL 77

Query: 440 RQVP--SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD---- 493
            ++   S   +  P L+IL+LS N               L+EL+L    L +   D    
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 494 ----ILRLQQLRILD 504
                 R  +L  LD
Sbjct: 138 ISAIRERFPKLLRLD 152

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 382 ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSC 431
           +  L L+   +       L   L +  SL+ L LS N + D       +++      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 432 LKLDNNPLRQVPSDGFKDI----PMLQIL 456
           L L +    +   D  + +    P L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDL 458
            +Q+L +   ++ D     +L  L     ++LD+  L     +  S   +  P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 459 SYN------IASLPENPPFSSLPHLQELYLRRMQ 486
             N      +  + +    +    +Q+L L+   
Sbjct: 63  RSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 356 SVTSKELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSI-----QELPPELSSCASLQTL 408
           S+  + L ++   LS A  +E+     +   + L    +     +++   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKL 434
            L  N++ D     +         K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 19/133 (14%), Positives = 41/133 (30%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
           P+         L  +R+   D    +  + +       +   L+ +     + +  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEV 516
            +  +         F   P L  L L    L       ++   L+ L LS N L     +
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 517 TYIFVMLQKKSIN 529
            ++    ++    
Sbjct: 122 RWLQRWEEEGLGG 134

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 239 NNALSALPAELGK------LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
            +    +P  + +       ++    +L    + +   +     +  +  +N+ +  +  
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 63

Query: 293 EIGKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            I  +  + KL L GN L        L++          +K L S     +    S    
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
            +  +   + +   E    G N     + +    ++  L L  N I ++ P L+    LQ
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            L LS+N I D     L  L +L  L+L +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-- 105
           Q L L   N+            +       + + +  A       ++ +D+S + I    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 106 IPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNL---SDFKASNNCITSLPEDLADCSK 161
           +   +   + L        +L   + ++L +  NL   +    S     +L   L+ CS+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 162 MSKLDVEGNKLTV---LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
           + +L++          +   +      +T+L  S    N     + +L R     +H + 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 219 ILSIPSSISGCCSLAEFYM--------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             S+           +             + +     ELG++  L TL +    + +  +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV-FGIVPDGTL 241

Query: 271 EACQLRLSVLDLSNNSLSGLPP 292
           +  +  L  L ++ +  + +  
Sbjct: 242 QLLKEALPHLQINCSHFTTIAR 263

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	544
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.37
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.85

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2e-27  Score=231.35  Aligned_cols=342  Identities=23%  Similarity=0.320  Sum_probs=176.4

Q ss_pred             CCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcC
Q 009079           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (544)
Q Consensus        66 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (544)
                      .+.+|++|++++++++++ +.+..+++|++|++++|++++++. +.++++|++|++++|++..++ .++.+++|+.++++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-cccccccccccccc
Confidence            345667777777766665 355666777777777777666653 666777777777777766654 35666677777776


Q ss_pred             CCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcC
Q 009079          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (544)
Q Consensus       146 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~  225 (544)
                      ++.+..++. ......+.......+.+..+.....................    ..+...+.........+        
T Consensus       119 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------  185 (384)
T d2omza2         119 NNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL----KPLANLTTLERLDISSN--------  185 (384)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC----GGGTTCTTCCEEECCSS--------
T ss_pred             ccccccccc-ccccccccccccccccccccccccccccccccccccccchh----hhhcccccccccccccc--------
Confidence            666665533 23334555555554444433221111111111111111000    11122222222222222        


Q ss_pred             CccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceecc
Q 009079          226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (544)
Q Consensus       226 ~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l  305 (544)
                                     .... ......+++++.++++++.++.+........++++++++|.+..++ .+..+++++.+++
T Consensus       186 ---------------~~~~-~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l  248 (384)
T d2omza2         186 ---------------KVSD-ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDL  248 (384)
T ss_dssp             ---------------CCCC-CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred             ---------------cccc-ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhcc
Confidence                           1111 1223344444444444444444443333334555555555444432 3455566666666


Q ss_pred             CCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEE
Q 009079          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL  385 (544)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L  385 (544)
                      ++|.+..++                                                            .+..+++|+.+
T Consensus       249 ~~n~l~~~~------------------------------------------------------------~~~~~~~L~~L  268 (384)
T d2omza2         249 ANNQISNLA------------------------------------------------------------PLSGLTKLTEL  268 (384)
T ss_dssp             CSSCCCCCG------------------------------------------------------------GGTTCTTCSEE
T ss_pred             ccCccCCCC------------------------------------------------------------cccccccCCEe
Confidence            655543221                                                            12224455666


Q ss_pred             EcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCC
Q 009079          386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (544)
Q Consensus       386 ~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  465 (544)
                      +++++.++.++. +..++.++.+++..|.++.+..  +..+++++.|++++|++.++..  +..+++|++|++++|.++.
T Consensus       269 ~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         269 KLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             eccCcccCCCCc-cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence            666555555442 4555666666666666555432  4556666666666666665532  5556666666666666655


Q ss_pred             CCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCC
Q 009079          466 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN  508 (544)
Q Consensus       466 ~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n  508 (544)
                      +.  .++.+++|+.|++++|+++.++. +.++++|+.|+|++|
T Consensus       344 l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             Ch--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            43  35666666666666666666543 556666666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.1e-27  Score=233.14  Aligned_cols=343  Identities=28%  Similarity=0.424  Sum_probs=220.7

Q ss_pred             CCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEec
Q 009079           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  168 (544)
                      .+.+|++|+++++.++.+ +.+..+++|++|++++|+++.++ .++++++|++|++++|.+..++ .+..+++|+.|+++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-cccccccccccccc
Confidence            344566666666666555 34555666666666666665554 2555555555555555555443 24444555555544


Q ss_pred             CCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchh
Q 009079          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (544)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~  248 (544)
                      ++.++.+..                         ......+.......+.+..+.... .......... ....... ..
T Consensus       119 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~-~~  170 (384)
T d2omza2         119 NNQITDIDP-------------------------LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSF-GNQVTDL-KP  170 (384)
T ss_dssp             SSCCCCCGG-------------------------GTTCTTCSEEEEEEEEECCCGGGT-TCTTCSEEEE-EESCCCC-GG
T ss_pred             ccccccccc-------------------------cccccccccccccccccccccccc-cccccccccc-ccccchh-hh
Confidence            444433222                         122233333333333333221110 0111111111 0111111 22


Q ss_pred             hhCCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHH
Q 009079          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (544)
Q Consensus       249 l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  328 (544)
                      +...+.........+.............++.+++++|.+.++++ +..+++|+++++++|.+                  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l------------------  231 (384)
T d2omza2         171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL------------------  231 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC------------------
T ss_pred             hccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCC------------------
Confidence            33444444555555544443333333446666666666665543 34455666666665554                  


Q ss_pred             HhhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEE
Q 009079          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL  408 (544)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  408 (544)
                                                               ..++ .+..+++++.+++++|.+++++. +..+++|+++
T Consensus       232 -----------------------------------------~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L  268 (384)
T d2omza2         232 -----------------------------------------KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL  268 (384)
T ss_dssp             -----------------------------------------CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             -----------------------------------------CCcc-hhhcccccchhccccCccCCCCc-ccccccCCEe
Confidence                                                     3332 34557899999999999998764 7889999999


Q ss_pred             EccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       409 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      +++++.++.+.+  +..++.++.+.+.+|.+.++..  +..+++++.|++++|+++++.  .+..+++|++|++++|.++
T Consensus       269 ~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         269 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             eccCcccCCCCc--cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC
Confidence            999999988765  6889999999999999988643  788999999999999998875  3888999999999999999


Q ss_pred             ccCccccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCcc
Q 009079          489 EAPTDILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTEL  532 (544)
Q Consensus       489 ~i~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~  532 (544)
                      .++ .+..+++|++|++++|+++.+++ +..+++|+.|++++|.
T Consensus       343 ~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         343 DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred             CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence            886 57889999999999999999876 7999999999999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=8.9e-24  Score=198.06  Aligned_cols=265  Identities=23%  Similarity=0.273  Sum_probs=183.3

Q ss_pred             ccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCc-CCccCCCCCEEEccCCcCCcC-chhhhCCCCCCEEECCC
Q 009079          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS  262 (544)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~~l-~~~l~~~~~L~~L~l~~  262 (544)
                      ..+.++-++..++.+|..+.  +.+++|++++|+++.++. .+..+++|++++++++.+..+ |..+.++++|+.|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            45566666666777776553  567888888888887765 577788888888888887766 45677888888888888


Q ss_pred             CcCcccchhcccccccEEEccCCCCCCCCcc-ccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCcccc
Q 009079          263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA  341 (544)
Q Consensus       263 ~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (544)
                      |+++.++... ...+..+++.+|.+..++.. +........+....+......                           
T Consensus        89 n~l~~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~---------------------------  140 (305)
T d1xkua_          89 NQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------------------------  140 (305)
T ss_dssp             SCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------------------------
T ss_pred             CccCcCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccC---------------------------
Confidence            8887776543 23577777777777665443 444555555555554332110                           


Q ss_pred             ccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHH
Q 009079          342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA  421 (544)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~  421 (544)
                                                   ..+..+..+++|+.+++++|.++.++..  .+++|++|++++|..+.....
T Consensus       141 -----------------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~  189 (305)
T d1xkua_         141 -----------------------------IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAA  189 (305)
T ss_dssp             -----------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTG
T ss_pred             -----------------------------CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChh
Confidence                                         1122334456777788888777776654  357788888888777776666


Q ss_pred             HHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-------c
Q 009079          422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-------I  494 (544)
Q Consensus       422 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-------~  494 (544)
                      .|..++++++|++++|.+.+++...+.++++|++|++++|.++.+ +.++..+++|+.|+|++|+|+.++..       .
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             Hhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            677778888888888888777667777778888888888877766 34677778888888888887766432       2


Q ss_pred             cCCCCCCeeecCCCCCC
Q 009079          495 LRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       495 ~~~~~L~~L~l~~n~l~  511 (544)
                      ...++|+.|++++|++.
T Consensus       269 ~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTSCCCSEEECCSSSSC
T ss_pred             cccCCCCEEECCCCcCc
Confidence            34677888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.7e-24  Score=198.51  Aligned_cols=259  Identities=22%  Similarity=0.302  Sum_probs=211.5

Q ss_pred             hcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCCc-chhh
Q 009079           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~   87 (544)
                      ..+++||++.+++.+|+.+.               +++++|++++|.++++++ +|.++++|++|++++|.+..+ |.+|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCC---------------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            56789999999999997664               359999999999999986 799999999999999999987 5589


Q ss_pred             hCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCc-ccccCcCCCEEEcCCCccc---cCCccccCCCCce
Q 009079           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (544)
Q Consensus        88 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~  163 (544)
                      .++++|++|++++|+++.+|..  ....+..|...++.+..++. .+.....+..+....+...   ..+..+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            9999999999999999998865  34689999999999887765 3556778888888887654   3344577788999


Q ss_pred             EEEecCCccccccchhhcCccccceEEcCCCcCCC-CcccccCCCceeEEEccCCccccC-CcCCccCCCCCEEEccCCc
Q 009079          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (544)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~l~l~~~~  241 (544)
                      .++++++.+..++..   ..+++++|++.++.... .+..+..++.++.|++++|.+..+ +..+..+++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            999999988877654   35789999999988764 356788899999999999999876 4567889999999999999


Q ss_pred             CCcCchhhhCCCCCCEEECCCCcCcccchhccc--------ccccEEEccCCCCC
Q 009079          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS  288 (544)
Q Consensus       242 ~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~L~l~~~~l~  288 (544)
                      ++.+|..+..+++|+.|++++|+|+.++...+.        ..|+.+++++|.+.
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999988899999999999999999887665443        12455555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-22  Score=181.53  Aligned_cols=202  Identities=24%  Similarity=0.239  Sum_probs=158.5

Q ss_pred             CCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHH
Q 009079          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (544)
Q Consensus       251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (544)
                      ....+.+++.++++++.+|... +..++.|++++|.+..++. .|.++++|++|++++|.++.++               
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~---------------   71 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------------   71 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE---------------
T ss_pred             ccCCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc---------------
Confidence            4455666777777777776543 3457778888877777653 4677777777777777664432               


Q ss_pred             hhcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEE
Q 009079          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI  409 (544)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~  409 (544)
                                                                   .+..+++|+.|++++|.++..+..+..+++|+.|+
T Consensus        72 ---------------------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          72 ---------------------------------------------VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD  106 (266)
T ss_dssp             ---------------------------------------------CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred             ---------------------------------------------ccccccccccccccccccccccccccccccccccc
Confidence                                                         11235678888888888888877788888888999


Q ss_pred             ccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccc
Q 009079          410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE  489 (544)
Q Consensus       410 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  489 (544)
                      ++++.+..+....+..+++++.|++++|.+..++...+..+++|+.+++++|+++.+.+..|+.+++|+.|+|++|.|+.
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            88888888777777888888888888888888887778888888888888888888888888888888888888888888


Q ss_pred             cCccccCCCCCCeeecCCCCCCCC
Q 009079          490 APTDILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       490 i~~~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      +|..+..+++|+.|+|++|++.+-
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cChhHCCCCCCCEEEecCCCCCCC
Confidence            888888888888888888888753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6e-22  Score=181.05  Aligned_cols=200  Identities=25%  Similarity=0.293  Sum_probs=152.7

Q ss_pred             ccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009079          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS  356 (544)
Q Consensus       277 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (544)
                      +.+++.+++.++.+|+.+.  +++++|++++|.++.++..                                        
T Consensus        12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~----------------------------------------   49 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA----------------------------------------   49 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG----------------------------------------
T ss_pred             CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHH----------------------------------------
Confidence            5667777778888876654  4677888887777554321                                        


Q ss_pred             ccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCC
Q 009079          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (544)
Q Consensus       357 ~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~  436 (544)
                                        .+..+++|++|++++|.++.++. ++.+++|++|++++|+++.... .+..+++|+.|++++
T Consensus        50 ------------------~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          50 ------------------TLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSF  109 (266)
T ss_dssp             ------------------GGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCS
T ss_pred             ------------------Hhhcccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence                              23346678888888888887653 4677888888888888876544 357788888888888


Q ss_pred             CCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCc
Q 009079          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (544)
Q Consensus       437 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (544)
                      |++..+....+..+++++.|++++|.+..+.+..+..+++|+.+++++|+++.++.. +..+++|++|+|++|+++.+|+
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~  189 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh
Confidence            888887777778888888888888888888888888888888888888888876544 5568888888888888888887


Q ss_pred             ccccceeeeEeccCCcccccccc
Q 009079          516 VTYIFVMLQKKSINTELVDKNQQ  538 (544)
Q Consensus       516 ~l~~~~~L~~l~l~~n~~~~~~~  538 (544)
                      .+..+++|+.|+++||++.++++
T Consensus       190 ~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         190 GFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTTTTCCCSEEECCSCCBCCSGG
T ss_pred             hHCCCCCCCEEEecCCCCCCCcc
Confidence            77788888888888888877654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=3.9e-22  Score=187.37  Aligned_cols=241  Identities=25%  Similarity=0.345  Sum_probs=195.1

Q ss_pred             CccEEecccCccc---chhHhhcCCCCCCEEEcCC-CCCC-CcchhhhCCCCccEEEccCCccccC-CccccccCCccEE
Q 009079           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF  119 (544)
Q Consensus        46 ~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L  119 (544)
                      +++.|+++++.+.   .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+..+ +..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5899999999887   5789999999999999987 6776 7899999999999999999998865 4558899999999


Q ss_pred             EcCCCCCc-cCCcccccCcCCCEEEcCCCccc-cCCccccCCCCc-eEEEecCCccccccchhhcCccccceEEcCCCcC
Q 009079          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (544)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (544)
                      ++++|.+. .+|..+++++.++.+++++|.+. .+|..+..+.++ +.++++++.++......+..+... .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99998876 67788999999999999999887 677777777776 889999999887766666665444 677777766


Q ss_pred             C-CCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCC-cCchhhhCCCCCCEEECCCCcCcccchhccc
Q 009079          197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQ  274 (544)
Q Consensus       197 ~-~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  274 (544)
                      . .+|..+..+++++.++++++.+...+..+..+++++.|++++|.+. .+|..+.++++|+.|++++|++++.      
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~------  283 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------  283 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc------
Confidence            3 4567778888899999998888766667777888999999998888 7888888888888888888877631      


Q ss_pred             ccccEEEccCCCCCCCCccccCCCCcceeccCCCC
Q 009079          275 LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (544)
Q Consensus       275 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~  309 (544)
                                     +| .+..+++|+.+++++|+
T Consensus       284 ---------------iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         284 ---------------IP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ---------------CC-CSTTGGGSCGGGTCSSS
T ss_pred             ---------------CC-CcccCCCCCHHHhCCCc
Confidence                           22 23455666667777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=1.4e-19  Score=173.16  Aligned_cols=312  Identities=25%  Similarity=0.291  Sum_probs=173.2

Q ss_pred             CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC
Q 009079           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (544)
Q Consensus        91 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  170 (544)
                      .++++|+++++.++.+|+.   .++|++|++++|+++.+|..   ..+|+.|+++++.++.+++.   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3577788888777777743   45677777777777777654   34566777777666655421   134555555555


Q ss_pred             ccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhh
Q 009079          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (544)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~  250 (544)
                      .+..++.  +                       +.+++|+.++++++.+...+..   ...+..+.+..+..... ..+.
T Consensus       109 ~l~~lp~--~-----------------------~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~  159 (353)
T d1jl5a_         109 QLEKLPE--L-----------------------QNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PELQ  159 (353)
T ss_dssp             CCSSCCC--C-----------------------TTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CCCT
T ss_pred             ccccccc--h-----------------------hhhccceeeccccccccccccc---cccccchhhcccccccc-cccc
Confidence            5554432  2                       3344455555544444433222   22333444433333222 1234


Q ss_pred             CCCCCCEEECCCCcCcccchhcccccccEEEccCCCCCCCCccccCCCCcceeccCCCCCccccccccCCCchHHHHHHh
Q 009079          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR  330 (544)
Q Consensus       251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (544)
                      .++.++.+.+..+.....+....  ..+.+....+.+..++. +..++.++.++++++....++                
T Consensus       160 ~l~~l~~L~l~~n~~~~~~~~~~--~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~----------------  220 (353)
T d1jl5a_         160 NLPFLTAIYADNNSLKKLPDLPL--SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP----------------  220 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCCCCT--TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC----------------
T ss_pred             ccccceecccccccccccccccc--ccccccccccccccccc-ccccccccccccccccccccc----------------
Confidence            45556666666555544332211  13344444444443332 455667777777666543221                


Q ss_pred             hcCCCCCccccccchhhhhhhhhcccccceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEc
Q 009079          331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLIL  410 (544)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l  410 (544)
                                                                 ..   ..++..+.+..+.+...+.   ..+.+...++
T Consensus       221 -------------------------------------------~~---~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~  251 (353)
T d1jl5a_         221 -------------------------------------------DL---PPSLEALNVRDNYLTDLPE---LPQSLTFLDV  251 (353)
T ss_dssp             -------------------------------------------SC---CTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             -------------------------------------------cc---ccccccccccccccccccc---cccccccccc
Confidence                                                       10   2245555666655554332   2344555566


Q ss_pred             cCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCccccc
Q 009079          411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA  490 (544)
Q Consensus       411 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i  490 (544)
                      ..+.+..+..    -.......++..+.+..+.    ..+++|++|++++|+++.+.    +.+++|+.|++++|.|+++
T Consensus       252 ~~~~~~~l~~----l~~~~~~~~~~~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp----~~~~~L~~L~L~~N~L~~l  319 (353)
T d1jl5a_         252 SENIFSGLSE----LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV  319 (353)
T ss_dssp             CSSCCSEESC----CCTTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred             cccccccccc----ccchhcccccccCcccccc----ccCCCCCEEECCCCccCccc----cccCCCCEEECCCCcCCcc
Confidence            5554443221    1134455666666665543    23677888888888777654    2357888888888888887


Q ss_pred             CccccCCCCCCeeecCCCCCCCCCcccccceee
Q 009079          491 PTDILRLQQLRILDLSQNSLQSIPEVTYIFVML  523 (544)
Q Consensus       491 ~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L  523 (544)
                      |..   +++|++|++++|+++++|+....+..|
T Consensus       320 ~~~---~~~L~~L~L~~N~L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         320 PEL---PQNLKQLHVEYNPLREFPDIPESVEDL  349 (353)
T ss_dssp             CCC---CTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ccc---cCCCCEEECcCCcCCCCCccccccCee
Confidence            753   457888888888888888755554444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=180.15  Aligned_cols=223  Identities=27%  Similarity=0.362  Sum_probs=151.3

Q ss_pred             ccEEEccCCCCCCCCc-cccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcc
Q 009079          277 LSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (544)
Q Consensus       277 L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (544)
                      +++|++++|+++.+++ .|.++++|++++++++.+..+....+..                                   
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~-----------------------------------   78 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-----------------------------------   78 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-----------------------------------
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccc-----------------------------------
Confidence            4555555555555443 3566666666666666665544332221                                   


Q ss_pred             cccceeeec-CCCccCCC-chhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEE
Q 009079          356 SVTSKELSL-EGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL  432 (544)
Q Consensus       356 ~~~l~~l~l-~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L  432 (544)
                      ...+..+.. ..+.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.+++++|.++.++...|..+++|+.|
T Consensus        79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc
Confidence            112222222 22333333 3334556788888888888776543 46677888888888888888877777888888888


Q ss_pred             ECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCc-cccCCCCCCeeecCCCCCC
Q 009079          433 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQ  511 (544)
Q Consensus       433 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~-~~~~~~~L~~L~l~~n~l~  511 (544)
                      ++++|.+..++..+|.++++|+.+++++|+++.+.+..|+.+++|+.|++++|.+..++. .+..+++|+.|++++|++.
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            888888888777778888888888888888888888888888888888888888886653 4567888888888888888


Q ss_pred             CCCcccccceeeeEeccCCcccc
Q 009079          512 SIPEVTYIFVMLQKKSINTELVD  534 (544)
Q Consensus       512 ~l~~~l~~~~~L~~l~l~~n~~~  534 (544)
                      +-.+..+...+++.++...+.+.
T Consensus       239 C~C~~~~l~~~l~~~~~~~~~~~  261 (284)
T d1ozna_         239 CDCRARPLWAWLQKFRGSSSEVP  261 (284)
T ss_dssp             CSGGGHHHHHHHHHCCSEECCCB
T ss_pred             CCccchHHHHHHHhCcCCCCceE
Confidence            65555555556666665555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=5.7e-22  Score=186.28  Aligned_cols=240  Identities=25%  Similarity=0.366  Sum_probs=205.7

Q ss_pred             hcceeEcCCCccc---ccchHHhhcccccCCCCceeeecCccEEeccc-Cccc-chhHhhcCCCCCCEEEcCCCCCCCc-
Q 009079           10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL-   83 (544)
Q Consensus        10 ~~~~l~ls~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~~l-   83 (544)
                      .++.|||+++.+.   .+|+.+..             +++|++|++++ |.+. .+|..+.++++|++|++++|++..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-------------L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-------------Cccccccccccccccccccccccccccccchhhhccccccccc
Confidence            5889999999887   46665544             68999999997 6777 8999999999999999999999865 


Q ss_pred             chhhhCCCCccEEEccCCccc-cCCccccccCCccEEEcCCCCCc-cCCcccccCcCC-CEEEcCCCcccc-CCccccCC
Q 009079           84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCITS-LPEDLADC  159 (544)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~-~~~~~~~~  159 (544)
                      +..+..+.+|+++++++|.+. .+|..+..+++|+.+++++|.+. .+|..+..+..+ +.+.++++.+.. .+..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            457889999999999999766 67888999999999999999988 788888887776 889999998874 34455554


Q ss_pred             CCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccc-cCCcCCccCCCCCEEEcc
Q 009079          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG  238 (544)
Q Consensus       160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~l~l~  238 (544)
                       ....+++..+.........+..+++++.+++.++.+...+..+..+++|+.|++++|+++ .+|..+..+++|++|+++
T Consensus       198 -~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 -NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             -CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence             445799998888877677788899999999999999877778889999999999999999 799999999999999999


Q ss_pred             CCcCC-cCchhhhCCCCCCEEECCCCc
Q 009079          239 NNALS-ALPAELGKLSKLGTLDLHSNQ  264 (544)
Q Consensus       239 ~~~~~-~l~~~l~~~~~L~~L~l~~~~  264 (544)
                      +|.++ .+|. +..+++|+.+++++|+
T Consensus       277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         277 FNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCcccccCCC-cccCCCCCHHHhCCCc
Confidence            99998 6775 5778899999998886

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=3.1e-19  Score=170.64  Aligned_cols=201  Identities=30%  Similarity=0.346  Sum_probs=97.4

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  125 (544)
                      ++++|+++++.++.+|+.   .++|++|++++|+++.+|+.+   .+|+.|++++|.++.++..   .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            466666666666666532   345666666666666665432   3566666666655554321   1346666666666


Q ss_pred             CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (544)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (544)
                      +..+|. ++.+++|++++++++.+...+..   ...+..+.+..+.....                         ..+..
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-------------------------~~l~~  160 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-------------------------PELQN  160 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-------------------------CCCTT
T ss_pred             cccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccc-------------------------ccccc
Confidence            655543 34555566666655555444322   22334444433322211                         22334


Q ss_pred             CCceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECCCCcCcccchhcccccccEEEccCC
Q 009079          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (544)
Q Consensus       206 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~~  285 (544)
                      ++.++.+.++++.....+...   ...+.+...+..+..++. ...++.++.++++++....++..  ...+..+.+..+
T Consensus       161 l~~l~~L~l~~n~~~~~~~~~---~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~--~~~l~~~~~~~~  234 (353)
T d1jl5a_         161 LPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDN  234 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSS
T ss_pred             cccceeccccccccccccccc---cccccccccccccccccc-ccccccccccccccccccccccc--cccccccccccc
Confidence            444555555555444332211   122334444444443332 34555666666666555443321  223455555555


Q ss_pred             CCCCC
Q 009079          286 SLSGL  290 (544)
Q Consensus       286 ~l~~l  290 (544)
                      .+...
T Consensus       235 ~~~~~  239 (353)
T d1jl5a_         235 YLTDL  239 (353)
T ss_dssp             CCSCC
T ss_pred             ccccc
Confidence            54443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-21  Score=177.01  Aligned_cols=261  Identities=24%  Similarity=0.260  Sum_probs=200.4

Q ss_pred             eEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCch-hhhCCCCCCEEECCCCcCcccchhcccc--cccEEEccC-C
Q 009079          210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSN-N  285 (544)
Q Consensus       210 ~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~--~L~~L~l~~-~  285 (544)
                      ..++.++..++.+|..+  .+.+++|++++|.++.+|. .+.++++|++++++++.+..+.......  .+..+.... +
T Consensus        14 ~~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            45677788888888766  3678999999999998864 5889999999999999999887766543  367776653 4


Q ss_pred             CCCCC-CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhhhhhhhcccccceeeec
Q 009079          286 SLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (544)
Q Consensus       286 ~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (544)
                      .+..+ +..+.++++|+++++++|.+..+..                                                 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------------------------------------  122 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGP-------------------------------------------------  122 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------------------------------------------
T ss_pred             ccccccchhhcccccCCEEecCCcccccccc-------------------------------------------------
Confidence            56555 4447788888888888877643321                                                 


Q ss_pred             CCCccCCCchhhccCCCccEEEcCCCCCCCCCh-hhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCC
Q 009079          365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (544)
Q Consensus       365 ~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~  443 (544)
                               ..+....+|+.+++++|.++.++. .+..+++|++|++++|.++.+++..|.++++|+++++++|++..+.
T Consensus       123 ---------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~  193 (284)
T d1ozna_         123 ---------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH  193 (284)
T ss_dssp             ---------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ---------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccC
Confidence                     123336789999999999999764 5788999999999999999998888999999999999999999988


Q ss_pred             CCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCC-CCCccccccee
Q 009079          444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEVTYIFVM  522 (544)
Q Consensus       444 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~  522 (544)
                      ...|..+++|++|++++|.+..+.+..|+.+++|+.|++++|.+..--...+-...++.+....+.+. ..|..+.   .
T Consensus       194 ~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~---g  270 (284)
T d1ozna_         194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA---G  270 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGT---T
T ss_pred             hhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHc---C
Confidence            88899999999999999999999999999999999999999987732121122234555666666666 3454443   3


Q ss_pred             eeEeccCCccc
Q 009079          523 LQKKSINTELV  533 (544)
Q Consensus       523 L~~l~l~~n~~  533 (544)
                      ....+++.+.+
T Consensus       271 ~~l~~l~~~~l  281 (284)
T d1ozna_         271 RDLKRLAANDL  281 (284)
T ss_dssp             CBGGGSCGGGS
T ss_pred             CccccCCHHHC
Confidence            34444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=5.1e-19  Score=157.34  Aligned_cols=205  Identities=21%  Similarity=0.297  Sum_probs=131.0

Q ss_pred             ccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCC
Q 009079           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL  126 (544)
Q Consensus        47 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~  126 (544)
                      +..+++..+.+.++. .++.+.+|++|++.+|.++++ +.+..+++|++|++++|.++.++ .+..+++|+++++++|.+
T Consensus        21 ~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCC
T ss_pred             HHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccc
Confidence            344455555554332 334456667777776666666 35666677777777776666553 256666777777776666


Q ss_pred             ccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCC
Q 009079          127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL  206 (544)
Q Consensus       127 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~  206 (544)
                      +.++ .++++++|+.++++++....++ .+...+.++.+.++++.+.....  +..+++|++|++.+|.+...+ .++.+
T Consensus        98 ~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~~l  172 (227)
T d1h6ua2          98 KNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANL  172 (227)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             cccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhccc
Confidence            6553 4556677777777666655442 34555667777776666654332  556667777777777665543 36677


Q ss_pred             CceeEEEccCCccccCCcCCccCCCCCEEEccCCcCCcCchhhhCCCCCCEEECC
Q 009079          207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (544)
Q Consensus       207 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~l~~~l~~~~~L~~L~l~  261 (544)
                      ++|+.|++++|+++.++ .+..+++|++|++++|++++++. +.++++|+.|+++
T Consensus       173 ~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         173 SKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            77777777777777663 36667777777777777777753 6777777777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-21  Score=192.27  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CCccEEEccCCcccc--CCccccccCCccEEEcCCCCCc-----cCCcccccCcCCCEEEcCCCcccc-----CCcccc-
Q 009079           91 HMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS-----LPEDLA-  157 (544)
Q Consensus        91 ~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-  157 (544)
                      ++|++|++++++++.  +.+.+..+++++.|++++|.++     .+...+..+++|++|++++|.+..     +.+.+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            357788888887773  3344667777788888877766     223345566667777777666541     112222 


Q ss_pred             CCCCceEEEecCCcccc
Q 009079          158 DCSKMSKLDVEGNKLTV  174 (544)
Q Consensus       158 ~~~~L~~L~l~~~~~~~  174 (544)
                      ...+|++|++++|.++.
T Consensus        82 ~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCCCCEEECTTSCCBG
T ss_pred             CCCCCCEEECCCCCccc
Confidence            12356666666665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.5e-20  Score=181.69  Aligned_cols=381  Identities=19%  Similarity=0.177  Sum_probs=226.5

Q ss_pred             hcceeEcCCCcccccc-hHHhhcccccCCCCceeeecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCCC-
Q 009079           10 TSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-   82 (544)
Q Consensus        10 ~~~~l~ls~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~-   82 (544)
                      .+++||++++++.+.. .+++..            ++++++|++++|.++     .+..++..+++|++|++++|.+++ 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~------------l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~   70 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV   70 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHh------------CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH
Confidence            5789999999988532 222222            577999999999887     345678899999999999998863 


Q ss_pred             ----cchhhh-CCCCccEEEccCCcccc-----CCccccccCCccEEEcCCCCCccCC-----cccc-cCcCCCEEEcCC
Q 009079           83 ----LPAAIG-ELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKELP-----SSLG-RCLNLSDFKASN  146 (544)
Q Consensus        83 ----l~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~-~~~~L~~L~l~~  146 (544)
                          +.+.+. ...+|++|++++|.+++     ++..+..+++|++|++++|.++..+     ..+. ............
T Consensus        71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~  150 (460)
T d1z7xw1          71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY  150 (460)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc
Confidence                223332 24579999999998873     3456778899999999999876321     1111 122233333333


Q ss_pred             Ccccc-----CCccccCCCCceEEEecCCccccccc-----hhhcCccccceEEcCCCcCCCC-----cccccCCCceeE
Q 009079          147 NCITS-----LPEDLADCSKMSKLDVEGNKLTVLSN-----NLIASWTMLTELIASKNLLNGM-----PETIGSLSRLIR  211 (544)
Q Consensus       147 ~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~~~~L~~  211 (544)
                      .....     +...+.....++.+.++++.......     ...........+.+.++.....     ...+...+.++.
T Consensus       151 ~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  230 (460)
T d1z7xw1         151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE  230 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            33221     11223445677888887776542211     1112223455666666655322     123455667778


Q ss_pred             EEccCCccc------cCCcCCccCCCCCEEEccCCcCCc-----CchhhhCCCCCCEEECCCCcCcccchhc-------c
Q 009079          212 LDLHQNRIL------SIPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEA-------C  273 (544)
Q Consensus       212 L~l~~~~~~------~l~~~~~~~~~L~~l~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~-------~  273 (544)
                      ++++++.+.      ...........++.+++++|.+..     ....+...+.++.+++++|.+.......       .
T Consensus       231 l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~  310 (460)
T d1z7xw1         231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP  310 (460)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred             cchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence            888777654      112234456677788888777662     2334556777777787777765321111       1


Q ss_pred             cccccEEEccCCCCCCC-----CccccCCCCcceeccCCCCCccccccccCCCchHHHHHHhhcCCCCCccccccchhhh
Q 009079          274 QLRLSVLDLSNNSLSGL-----PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL  348 (544)
Q Consensus       274 ~~~L~~L~l~~~~l~~l-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (544)
                      ...|+.++++++.+...     ...+..+++|++|++++|.+...+                                  
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g----------------------------------  356 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG----------------------------------  356 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH----------------------------------
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc----------------------------------
Confidence            12355666655554431     112234445555555555442110                                  


Q ss_pred             hhhhhcccccceeeecCCCccCCCchhhc-cCCCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCCHHH
Q 009079          349 ITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAI  422 (544)
Q Consensus       349 ~~~~~~~~~~l~~l~l~~~~~~~i~~~~~-~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~  422 (544)
                                          +..++..+. ..+.|++|++++|.+++     ++..+..+++|++|++++|.+++.....
T Consensus       357 --------------------~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  416 (460)
T d1z7xw1         357 --------------------VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ  416 (460)
T ss_dssp             --------------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred             --------------------cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHH
Confidence                                001222332 24578999999999875     4555778899999999999988643332


Q ss_pred             ----Hh-CCCCCCEEECCCCCCCcCCCCc----cCCCCCcceE
Q 009079          423 ----LT-SLSSLSCLKLDNNPLRQVPSDG----FKDIPMLQIL  456 (544)
Q Consensus       423 ----l~-~~~~L~~L~l~~n~i~~~~~~~----l~~~~~L~~L  456 (544)
                          +. ....|+.|++.++.+.......    ....|+|+.|
T Consensus       417 l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence                22 2347999999999887422221    2345666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.3e-18  Score=153.08  Aligned_cols=206  Identities=19%  Similarity=0.313  Sum_probs=171.1

Q ss_pred             cceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCC
Q 009079           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (544)
Q Consensus        11 ~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~   90 (544)
                      +..++++.+.+.++...  +.            +.+|++|++.++.++.++ .+.++++|++|++++|.++.++ .+..+
T Consensus        21 ~~~~~l~~~~~~d~~~~--~~------------l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l   84 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTVTQ--AD------------LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNL   84 (227)
T ss_dssp             HHHHHTTCSSTTSEECH--HH------------HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             HHHHHhCCCCcCCcCCH--HH------------cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-ccccc
Confidence            34556777776654421  11            467999999999999884 6899999999999999998875 58899


Q ss_pred             CCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCC
Q 009079           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (544)
Q Consensus        91 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  170 (544)
                      ++|+++++++|.++.++ .+..+++|+.++++++....++ .+...+.++.+.++.+.+.... .+...++|++|+++++
T Consensus        85 ~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2          85 TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccc-hhccccchhhhhchhhhhchhh-hhcccccccccccccc
Confidence            99999999999988774 5788999999999998877663 4667889999999998887653 4677899999999999


Q ss_pred             ccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCCccCCCCCEEEccC
Q 009079          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN  239 (544)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~l~l~~  239 (544)
                      .+.....  +.++++|++|++++|.+++++. +..+++|++|++++|+++.++ .+..+++|+.|++++
T Consensus       162 ~~~~~~~--l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         162 QVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             ccccchh--hcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            8876554  7889999999999999988854 788999999999999999885 478899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=5.8e-18  Score=148.02  Aligned_cols=163  Identities=25%  Similarity=0.338  Sum_probs=143.3

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      +++.++++++.+..++ .+..+++|++|++++|++++++. ++.+++|+.|++++|++++++.  +..+++|+.|++++|
T Consensus        47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS
T ss_pred             CccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccccccc--ccccccccccccccc
Confidence            6889999999998876 46778999999999999999874 6889999999999999998763  788999999999999


Q ss_pred             CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT  517 (544)
Q Consensus       438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l  517 (544)
                      .+..+.  .+..++.++.+++++|.++...  .+..+++|+.+++++|.++.++. +.++++|++|++++|+++.+++ +
T Consensus       123 ~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~-l  196 (210)
T d1h6ta2         123 GISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-L  196 (210)
T ss_dssp             CCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             cccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh-h
Confidence            988764  4788999999999999887653  47788999999999999998854 7889999999999999999874 8


Q ss_pred             ccceeeeEeccCC
Q 009079          518 YIFVMLQKKSINT  530 (544)
Q Consensus       518 ~~~~~L~~l~l~~  530 (544)
                      ..+++|+.|++++
T Consensus       197 ~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         197 AGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCSEEEEEE
T ss_pred             cCCCCCCEEEccC
Confidence            9999999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.7e-17  Score=144.99  Aligned_cols=162  Identities=23%  Similarity=0.357  Sum_probs=84.7

Q ss_pred             CccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCC
Q 009079           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (544)
Q Consensus        46 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  125 (544)
                      ++++|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++ .+..+++|+.|+++++.
T Consensus        47 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccccc
Confidence            4566666666555543 3555666666666666655554 3455566666666666555554 35555566666665555


Q ss_pred             CccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccC
Q 009079          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (544)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (544)
                      +..++ .+..++.++.++++++.+...+ .+..+++|+.+++++|.++.+..  +.++++|++|++++|.+++++ .+..
T Consensus       124 ~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~  198 (210)
T d1h6ta2         124 ISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAG  198 (210)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred             ccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-hhcC
Confidence            55442 3445555555555555554432 23444555555555555544332  444445555555555444443 3444


Q ss_pred             CCceeEEEcc
Q 009079          206 LSRLIRLDLH  215 (544)
Q Consensus       206 ~~~L~~L~l~  215 (544)
                      +++|++|+++
T Consensus       199 l~~L~~L~Ls  208 (210)
T d1h6ta2         199 LKNLDVLELF  208 (210)
T ss_dssp             CTTCSEEEEE
T ss_pred             CCCCCEEEcc
Confidence            4445544443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.8e-17  Score=143.66  Aligned_cols=161  Identities=23%  Similarity=0.372  Sum_probs=85.2

Q ss_pred             CCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCC
Q 009079           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (544)
Q Consensus        67 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  146 (544)
                      ++++++|+++++.+.++. .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+++++.|+.+++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccc
Confidence            345555555555555442 34445555555555555554432 455555555555555554443 244555555555555


Q ss_pred             CccccCCccccCCCCceEEEecCCccccccchhhcCccccceEEcCCCcCCCCcccccCCCceeEEEccCCccccCCcCC
Q 009079          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (544)
Q Consensus       147 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~  226 (544)
                      +....++ .+..+++|+.|++++|.+..++.  +..++++++|++.+|.+++++ .++.+++|++|++++|+++.++ .+
T Consensus       116 ~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l  190 (199)
T d2omxa2         116 NQITDID-PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VL  190 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-ccchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-cc
Confidence            5444432 34455555566655555554432  555556666666666555553 3556666666666666666553 35


Q ss_pred             ccCCCCCEE
Q 009079          227 SGCCSLAEF  235 (544)
Q Consensus       227 ~~~~~L~~l  235 (544)
                      ..+++|+.|
T Consensus       191 ~~L~~L~~L  199 (199)
T d2omxa2         191 AKLTNLESL  199 (199)
T ss_dssp             GGCTTCSEE
T ss_pred             cCCCCCCcC
Confidence            555665543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2e-17  Score=143.27  Aligned_cols=159  Identities=25%  Similarity=0.371  Sum_probs=108.3

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n  437 (544)
                      .++++++.++++..++ ++..+++|++|++++|.++++++ +..+++|++|++++|.+..++.  +..+++|+.|++++|
T Consensus        41 ~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          41 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc--ccccccccccccccc
Confidence            5667777777776653 35566777777777777777654 6677777777777777666553  567777777777777


Q ss_pred             CCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCCCCccc
Q 009079          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEVT  517 (544)
Q Consensus       438 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l~~~l  517 (544)
                      .+..+.  .+..+++|+.|++++|++..+  ..+..+++|+.|++++|.++.++ .+.++++|+.|++++|+++.++. +
T Consensus       117 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~~-l  190 (199)
T d2omxa2         117 QITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDISV-L  190 (199)
T ss_dssp             CCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             cccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCcc-c
Confidence            766553  256677777777777766554  24666777777777777777664 35667777777777777777653 5


Q ss_pred             ccceeeeEe
Q 009079          518 YIFVMLQKK  526 (544)
Q Consensus       518 ~~~~~L~~l  526 (544)
                      ..+++|+.|
T Consensus       191 ~~L~~L~~L  199 (199)
T d2omxa2         191 AKLTNLESL  199 (199)
T ss_dssp             GGCTTCSEE
T ss_pred             cCCCCCCcC
Confidence            666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.73  E-value=4.4e-18  Score=146.63  Aligned_cols=175  Identities=20%  Similarity=0.199  Sum_probs=144.2

Q ss_pred             cceeeecCCCccCCCchhhccCCCccEEEcCCCCCCC-C-ChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECC
Q 009079          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-L-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (544)
Q Consensus       358 ~l~~l~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~-l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~  435 (544)
                      ..+++++++++++.+|.++  .+.+++|++++|.++. + +..|..+++|++|++++|.+..+....|..+++|+.|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4567889999999999877  3689999999999976 4 3457889999999999999999888889999999999999


Q ss_pred             CCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCceEeecCCcccccCccccCCCCCCeeecCCCCCCC-CC
Q 009079          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS-IP  514 (544)
Q Consensus       436 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~-l~  514 (544)
                      +|++..++..+|.++++|++|++++|.++.+.+.+|..+++|++|+|++|.+.......+-...++.+.+..+.++. .|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999998888999999999999999999999999999999999999999887543332323346677777777773 35


Q ss_pred             cccccceeeeEeccCCccccccc
Q 009079          515 EVTYIFVMLQKKSINTELVDKNQ  537 (544)
Q Consensus       515 ~~l~~~~~L~~l~l~~n~~~~~~  537 (544)
                      .   .+..++.++++.|.+.+..
T Consensus       167 ~---~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         167 S---KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             T---TTTTSBGGGSCTTTCCCCC
T ss_pred             h---hhcCCEeeecCHhhCcCCC
Confidence            4   4556677899999887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.9e-17  Score=142.53  Aligned_cols=153  Identities=24%  Similarity=0.308  Sum_probs=135.2

Q ss_pred             CccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCC-CCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      ..+.++.++++++.+|..+  .+++++|+|++|.|+. +....|..+++|++|++++|.+..++...+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4568999999999999865  3789999999999986 667778999999999999999999988999999999999999


Q ss_pred             CcccCCCCCCCCCCCccCceEeecCCcccccCcc-ccCCCCCCeeecCCCCCCCCCcccccceeeeEeccCCccccc
Q 009079          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEVTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~l~l~~n~~~~  535 (544)
                      +|+++.+.+.+|+++++|+.|+|++|.|+.+|.. |..+++|++|++++|++...++..+...+++...+..+.+.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence            9999999999999999999999999999988655 567999999999999999776666666678888888777653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=142.25  Aligned_cols=199  Identities=14%  Similarity=0.215  Sum_probs=101.5

Q ss_pred             ceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccchhH-hhcCCCCCCEEEcCCCCCCC-cc-hhhh
Q 009079           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LP-AAIG   88 (544)
Q Consensus        12 ~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~-l~-~~~~   88 (544)
                      ++++|++..++.+|+.++               +++++|+++++.++.++. +|.++++|++|++++|.+.. ++ .+|.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~   75 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   75 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---------------SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred             CEEEEeCCCCCCcCCCCC---------------CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc
Confidence            456666666666665443               236666666666666554 45666666666666665543 22 2455


Q ss_pred             CCCCccEEEccC-CccccCC-ccccccCCccEEEcCCCCCccCCcccccCcCCCEEEcCCCccccCCccccCCCCceEEE
Q 009079           89 ELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (544)
Q Consensus        89 ~~~~L~~L~l~~-~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  166 (544)
                      ++++++++.+.. +.+..++ ..+.++++|+.++++++.+...+. +.                    .+..++.++.+.
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~--------------------~~~~l~~l~~~~  134 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VH--------------------KIHSLQKVLLDI  134 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CT--------------------TTCBSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhccccc-cc--------------------cccccccccccc
Confidence            666666666543 2444332 335555666666665555543321 11                    112233344444


Q ss_pred             ecCCccccccchhhcCcc-ccceEEcCCCcCCCCcccccCCCceeEEE-ccCCccccCCc-CCccCCCCCEEEccCCcCC
Q 009079          167 VEGNKLTVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLD-LHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (544)
Q Consensus       167 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~l~~-~~~~~~~L~~l~l~~~~~~  243 (544)
                      ..++.+..+....+.+++ .++.+++.++.++.++.......+++++. ++++.++.++. .+..+++|+.|++++|+++
T Consensus       135 ~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            444444444444444433 45555555555555444333344444332 34455555543 2455555666666555555


Q ss_pred             cCc
Q 009079          244 ALP  246 (544)
Q Consensus       244 ~l~  246 (544)
                      .+|
T Consensus       215 ~l~  217 (242)
T d1xwdc1         215 SLP  217 (242)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.3e-17  Score=145.36  Aligned_cols=194  Identities=20%  Similarity=0.267  Sum_probs=136.3

Q ss_pred             hhcceeEcCCCcccccchHHhhcccccCCCCceeeecCccEEecccCcccc-hh-HhhcCCCCCCEEEcCC-CCCCCc-c
Q 009079            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LK-EDLRNLPLLTVLNVSH-NKLSEL-P   84 (544)
Q Consensus         9 ~~~~~l~ls~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~~L~~L~l~~-~~~~~l-~   84 (544)
                      +.+++||+++|.++.+|.+.+++            +++|++|++++|.+.. ++ ..|.++++++++.+.. +.+..+ +
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~------------l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSG------------FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTT------------CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCEEECcCCcCCccChhHhhc------------cchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            47899999999999999877766            6789999999998874 43 4788999999999875 566655 4


Q ss_pred             hhhhCCCCccEEEccCCccccCCc--cccccCCccEEEcCCCCCccCCc-ccccC-cCCCEEEcCCCccccCCccccCCC
Q 009079           85 AAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELPS-SLGRC-LNLSDFKASNNCITSLPEDLADCS  160 (544)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~  160 (544)
                      ..|.++++|++++++++.+...+.  .+..+..+..+...++.+..++. .+..+ ..++.++++++.++.++.......
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~  176 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT  176 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch
Confidence            578999999999999999886643  34556677777777777776543 33333 367777777777776665555555


Q ss_pred             CceEEE-ecCCccccccchhhcCccccceEEcCCCcCCCCcc-cccCCCceeEEEc
Q 009079          161 KMSKLD-VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDL  214 (544)
Q Consensus       161 ~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l  214 (544)
                      ++.++. ++++.++.++...|.++++|++|++++|.++.+|. .+.++++|+.+++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            655554 45556666666666666666666666666665543 3444554544443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=132.55  Aligned_cols=132  Identities=20%  Similarity=0.227  Sum_probs=91.2

Q ss_pred             hhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCc
Q 009079          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ  478 (544)
Q Consensus       399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  478 (544)
                      +.++..+++|++++|+|+.++. .+..+++|++|++++|++..++  .+..+++|+.|++++|.++.+.+..++.+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            4455667777777777776643 2456677777777777777663  366777777777777777776666566677777


Q ss_pred             eEeecCCcccccCc--cccCCCCCCeeecCCCCCCCCCc----ccccceeeeEeccCCccccc
Q 009079          479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPE----VTYIFVMLQKKSINTELVDK  535 (544)
Q Consensus       479 ~L~ls~n~l~~i~~--~~~~~~~L~~L~l~~n~l~~l~~----~l~~~~~L~~l~l~~n~~~~  535 (544)
                      .|++++|.++.+++  .+..+++|+.|++++|+++..|.    .+..+|+|+.||  +.++..
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~~  151 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVKL  151 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence            77777777776643  45667888888888888876664    367778888777  445543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.2e-16  Score=127.71  Aligned_cols=127  Identities=23%  Similarity=0.255  Sum_probs=103.3

Q ss_pred             ccCCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceE
Q 009079          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (544)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L  456 (544)
                      ..+.++++|++++|+++.++..+..+++|+.|++++|.++.++.  +..+++|++|++++|+++.++...+..+++|+.|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccccc
Confidence            34567888999999888887766778889999999998887743  6788899999999999888877667778899999


Q ss_pred             ecCCcccCCCCC-CCCCCCccCceEeecCCcccccCc----cccCCCCCCeeec
Q 009079          457 DLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDL  505 (544)
Q Consensus       457 ~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~i~~----~~~~~~~L~~L~l  505 (544)
                      ++++|+++.+.. ..+..+++|+.|++++|.++..|.    .+..+|+|+.||-
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999998877643 567888999999999998887764    3667899998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.4e-14  Score=113.83  Aligned_cols=82  Identities=27%  Similarity=0.330  Sum_probs=41.5

Q ss_pred             cCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCc--cccccCCccEEEcC
Q 009079           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS  122 (544)
Q Consensus        45 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~  122 (544)
                      ++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.  .+..+++|++|+++
T Consensus        20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            4455555555555555544555555555555555555543 34455555555555555554432  34445555555555


Q ss_pred             CCCCc
Q 009079          123 SNQLK  127 (544)
Q Consensus       123 ~~~~~  127 (544)
                      +|.++
T Consensus        99 ~N~i~  103 (124)
T d1dcea3          99 GNSLC  103 (124)
T ss_dssp             TSGGG
T ss_pred             CCcCC
Confidence            55444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.2e-15  Score=136.09  Aligned_cols=215  Identities=16%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             ceeEcCCCccc-ccchHHhhcccccCCCCceeeecCccEEecccCcccchhHhhcCCCCCCEEEcCCCCCC--Ccchhhh
Q 009079           12 GSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG   88 (544)
Q Consensus        12 ~~l~ls~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~   88 (544)
                      +++|++++.+. ++..++..              ..+..+.++...+...........+|++||++++.++  .+...+.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--------------~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~   68 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--------------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS   68 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--------------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             CEEECCCCCCCchHHHHHHh--------------ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHH
Confidence            47899988764 22223322              1244555555444332223334457777777777665  2344566


Q ss_pred             CCCCccEEEccCCccc-cCCccccccCCccEEEcCCC-CCcc--CCcccccCcCCCEEEcCCCc-cc--cCCccc-cCCC
Q 009079           89 ELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNC-IT--SLPEDL-ADCS  160 (544)
Q Consensus        89 ~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~-~~--~~~~~~-~~~~  160 (544)
                      ++++|++|++++|.++ ..+..+..+++|++|+++++ .+++  +.....++++|++|++++|. +.  .+...+ ..++
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            7777777777777665 33445666777777777764 3431  21223456667777666653 22  111111 1235


Q ss_pred             CceEEEecCCc--cccccc-hhhcCccccceEEcCCCc-CC-CCcccccCCCceeEEEccCC-ccc-cCCcCCccCCCCC
Q 009079          161 KMSKLDVEGNK--LTVLSN-NLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQN-RIL-SIPSSISGCCSLA  233 (544)
Q Consensus       161 ~L~~L~l~~~~--~~~~~~-~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~-~~~-~l~~~~~~~~~L~  233 (544)
                      +|+.|+++++.  ++.... ....++++|++|++++|. ++ .....+..+++|++|++++| .++ .....+..+++|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            66666666542  221111 112345556666655543 22 12234445555555555553 222 1112233444444


Q ss_pred             EEEccCC
Q 009079          234 EFYMGNN  240 (544)
Q Consensus       234 ~l~l~~~  240 (544)
                      .|++.++
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            4444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.8e-15  Score=134.27  Aligned_cols=81  Identities=26%  Similarity=0.242  Sum_probs=39.8

Q ss_pred             CccEEEcCCCC--CCC--CChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCCCCcc
Q 009079          381 EITKLDLSRNS--IQE--LPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQ  454 (544)
Q Consensus       381 ~L~~L~l~~~~--l~~--l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~  454 (544)
                      .|+.|+++++.  +++  +......+++|++|++++| .+++.....+..+++|++|++++|. +++.....+..+|+|+
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            45555555431  222  2222344555666666554 3444444445555666666665543 4433333345555666


Q ss_pred             eEecCCc
Q 009079          455 ILDLSYN  461 (544)
Q Consensus       455 ~L~l~~n  461 (544)
                      .|+++++
T Consensus       229 ~L~l~~~  235 (284)
T d2astb2         229 TLQVFGI  235 (284)
T ss_dssp             EEECTTS
T ss_pred             EEeeeCC
Confidence            6666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=5.8e-17  Score=153.74  Aligned_cols=85  Identities=21%  Similarity=0.233  Sum_probs=37.2

Q ss_pred             CCccEEEcCCCCCCC-----CChhhhcCCCCcEEEccCCCCCCCC-----HHHHhCCCCCCEEECCCCCCCcCC----CC
Q 009079          380 GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWP-----DAILTSLSSLSCLKLDNNPLRQVP----SD  445 (544)
Q Consensus       380 ~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~~~-----~~~l~~~~~L~~L~l~~n~i~~~~----~~  445 (544)
                      +.++.+.++++.++.     +...+..++.|++|++++|.+++..     ...+..+++|++|++++|.++...    ..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            445555555554442     2223344455555555555544311     112334455555555555543211    11


Q ss_pred             ccCCCCCcceEecCCcccC
Q 009079          446 GFKDIPMLQILDLSYNIAS  464 (544)
Q Consensus       446 ~l~~~~~L~~L~l~~n~l~  464 (544)
                      .+..++.|++|++++|.++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCC
T ss_pred             cccccccchhhhhhcCccC
Confidence            2334444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3.2e-14  Score=111.69  Aligned_cols=101  Identities=29%  Similarity=0.427  Sum_probs=50.7

Q ss_pred             cEEecccCcccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcCCCCCc
Q 009079           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (544)
Q Consensus        48 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~~  127 (544)
                      |.|+++++.++.++ .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|+++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            34555555555443 245555555555555555555555555555555555555555543 2445555555555555554


Q ss_pred             cCCc--ccccCcCCCEEEcCCCccc
Q 009079          128 ELPS--SLGRCLNLSDFKASNNCIT  150 (544)
Q Consensus       128 ~~~~--~~~~~~~L~~L~l~~~~~~  150 (544)
                      .++.  .++.+++|+.+++++|.+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            4431  2344444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=4.5e-15  Score=140.47  Aligned_cols=132  Identities=16%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             CcCCCEEEcCCCccc-----cCCccccCCCCceEEEecCCccccc-----cchhhcCccccceEEcCCCcCCC-----Cc
Q 009079          136 CLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MP  200 (544)
Q Consensus       136 ~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~  200 (544)
                      .+.|+.+.++++.+.     .+...+..+++|++|++++|.+...     ....+..+++|+.|++++|.++.     +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            445666666655543     1222344456677777766665421     12224455566666666665531     23


Q ss_pred             ccccCCCceeEEEccCCcccc-----CCcCCc--cCCCCCEEEccCCcCC-----cCchhhh-CCCCCCEEECCCCcCcc
Q 009079          201 ETIGSLSRLIRLDLHQNRILS-----IPSSIS--GCCSLAEFYMGNNALS-----ALPAELG-KLSKLGTLDLHSNQLKE  267 (544)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~-----l~~~~~--~~~~L~~l~l~~~~~~-----~l~~~l~-~~~~L~~L~l~~~~i~~  267 (544)
                      ..+..+++|++|++++|.++.     +...+.  ..+.|++|++++|.+.     .+...+. ++++|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            445566677777777776651     111221  2345777777777665     1233342 46677777777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.45  E-value=4.9e-16  Score=133.55  Aligned_cols=150  Identities=24%  Similarity=0.268  Sum_probs=109.9

Q ss_pred             ccEEEcCCC--CCCCCChhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecC
Q 009079          382 ITKLDLSRN--SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (544)
Q Consensus       382 L~~L~l~~~--~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~  459 (544)
                      .+.+++.+.  .+..++..+..+++|++|++++|.|++++.  +..+++|+.|++++|++.+++.. ...+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccc-ccccccccccccc
Confidence            444555543  355566778888888888888888887753  67788888888888888776532 3445678888888


Q ss_pred             CcccCCCCCCCCCCCccCceEeecCCcccccC--ccccCCCCCCeeecCCCCCCCCC-c----------ccccceeeeEe
Q 009079          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP-E----------VTYIFVMLQKK  526 (544)
Q Consensus       460 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~i~--~~~~~~~~L~~L~l~~n~l~~l~-~----------~l~~~~~L~~l  526 (544)
                      +|.++.+.  .+..+++|+.|++++|.++.++  ..+..+++|+.|++++|++...+ .          .+..+|+|+.|
T Consensus       102 ~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L  179 (198)
T d1m9la_         102 YNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred             cccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence            88887663  3677888999999999888765  34677899999999999887331 1          15678889988


Q ss_pred             ccCCcccccccc
Q 009079          527 SINTELVDKNQQ  538 (544)
Q Consensus       527 ~l~~n~~~~~~~  538 (544)
                      |  +.+++..+.
T Consensus       180 D--~~~I~~~er  189 (198)
T d1m9la_         180 D--GMPVDVDER  189 (198)
T ss_dssp             S--SGGGTTTTT
T ss_pred             C--CccCCHHHH
Confidence            7  777766553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=5.8e-15  Score=126.76  Aligned_cols=129  Identities=28%  Similarity=0.310  Sum_probs=107.6

Q ss_pred             cCccEEecccC--cccchhHhhcCCCCCCEEEcCCCCCCCcchhhhCCCCccEEEccCCccccCCccccccCCccEEEcC
Q 009079           45 VDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (544)
Q Consensus        45 ~~L~~L~l~~~--~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~  122 (544)
                      ...+.+++++.  .++.++.++..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.....+++|+.|+++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            44666777764  56788889999999999999999999885 6888999999999999999888767777889999999


Q ss_pred             CCCCccCCcccccCcCCCEEEcCCCccccCC--ccccCCCCceEEEecCCccccc
Q 009079          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVL  175 (544)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~  175 (544)
                      +|+++.++ .+..+++|++|++++|.+..++  ..+..+++|+.|++++|++...
T Consensus       102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence            99988774 5778899999999999888765  3578889999999999887643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-12  Score=105.16  Aligned_cols=112  Identities=20%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             cCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCC-CCcCCCCccCCCCCcceEecCCcccCCCCCCCCCCCccCce
Q 009079          401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE  479 (544)
Q Consensus       401 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  479 (544)
                      .+...+.++.+++.+.+.+.. +..+++|++|++++++ ++.++..+|.++++|+.|++++|+++.+.+.+|..+++|+.
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            344566788888887776544 6788899999997664 88888888999999999999999999999999999999999


Q ss_pred             EeecCCcccccCccccCCCCCCeeecCCCCCCCC
Q 009079          480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI  513 (544)
Q Consensus       480 L~ls~n~l~~i~~~~~~~~~L~~L~l~~n~l~~l  513 (544)
                      |+|++|.++.+|........|+.|+|++|++..-
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccCC
Confidence            9999999999988877777899999999998743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=105.03  Aligned_cols=109  Identities=25%  Similarity=0.278  Sum_probs=96.8

Q ss_pred             CCCccEEEcCCCCCCCCChhhhcCCCCcEEEccCC-CCCCCCHHHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEe
Q 009079          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (544)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~  457 (544)
                      +...+.++++++.+.+.|..+..+++|++|++.++ .++.++...|.++++|+.|++++|+++.++..+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            44566789999998888888888999999999766 59999988899999999999999999999888999999999999


Q ss_pred             cCCcccCCCCCCCCCCCccCceEeecCCccc
Q 009079          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (544)
Q Consensus       458 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  488 (544)
                      +++|+++.+....|... .|+.|+|++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCccc
Confidence            99999999988888765 6999999999775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1e-08  Score=83.96  Aligned_cols=66  Identities=26%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             hcCCCCcEEEccCCCCCCCCH--HHHhCCCCCCEEECCCCCCCcCCCCccCCCCCcceEecCCcccCC
Q 009079          400 SSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (544)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~--~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~  465 (544)
                      ..++.|++|++++|+|+++.+  ..+..+++|+.|++++|+|+++....+-....|+.+++++|++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            345555555555555555432  234455555555555555555433222223345555555554433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=3.6e-07  Score=74.85  Aligned_cols=58  Identities=26%  Similarity=0.276  Sum_probs=28.2

Q ss_pred             ecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCC
Q 009079           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFN  101 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~  101 (544)
                      .+.|++|++++|.+.     .+.+.+...+.|++|++++|.++     .+..++...+.|++|+++++
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            344555555555554     22234444555555555555544     12234444455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.22  E-value=8.3e-07  Score=72.62  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             ecCccEEecccC-ccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCccc-----cCC
Q 009079           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (544)
Q Consensus        44 ~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~l~  107 (544)
                      .+.|++|+++++ .++     .+..++...++|++|++++|.+.     .+.+++...+.|++|++++|.++     .+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            356777777763 354     23456677777888888877766     33345666777777777777766     233


Q ss_pred             ccccccCCccEEEcCCCCCcc
Q 009079          108 DEIGSATALVKFDCSSNQLKE  128 (544)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~~~~  128 (544)
                      ..+...+.|++|+++++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHhCCcCCEEECCCCcCCC
Confidence            445566667777776665443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.7e-07  Score=73.72  Aligned_cols=80  Identities=29%  Similarity=0.260  Sum_probs=64.1

Q ss_pred             cCCCccEEEcCCCCCCCCC---hhhhcCCCCcEEEccCCCCCCCCHHHHhCCCCCCEEECCCCCCCcCCCC-------cc
Q 009079          378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-------GF  447 (544)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~-------~l  447 (544)
                      .++.|++|++++|+++.++   ..+..+++|+.|++++|.++++....+.....|+++++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4678999999999998764   3467899999999999999998765556667899999999999764332       25


Q ss_pred             CCCCCcceEe
Q 009079          448 KDIPMLQILD  457 (544)
Q Consensus       448 ~~~~~L~~L~  457 (544)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6788888775

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.95  E-value=3.5e-06  Score=68.79  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=17.9

Q ss_pred             hhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEccCCcc
Q 009079           63 DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSI  103 (544)
Q Consensus        63 ~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l  103 (544)
                      ++..+++|++|++++|.++     .+..++...+.++.++++++.+
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3344444444444444443     1222334444444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.85  E-value=1.1e-05  Score=65.70  Aligned_cols=55  Identities=25%  Similarity=0.236  Sum_probs=25.4

Q ss_pred             ecCccEEecccCccc-----chhHhhcCCCCCCEEEcCCCCCC-----CcchhhhCCCCccEEEc
Q 009079           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDV   98 (544)
Q Consensus        44 ~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l   98 (544)
                      +++|++|++++|.++     .+.+.+...+.++.++++++.+.     .+..++...++|+.+++
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            344555555555544     12234444455555555555444     12234444455554333