Citrus Sinensis ID: 009082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMDED
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccEEEEEcccccccccEEEEEEEEccccccccEEEcccEEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHccccccccccccccccccEEEEEEEccEEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHcHccccccccHcEEEEEEccccccccEEEEEEEEEccEcccccEEcccEEEEEEccEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccEEEEccccHHHcccccEEEEEEEcccEEEEEEcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
mgfsmqpygIQSMLKEGHKHMSGLDEAVLKNIDACKQLstitrtslgpngmnKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAqqeeigdganlTISFAGEILQGAEELIRmglhpseiISGYTKAINKTIEVLEELVEEgsenmdvrnTEEVIYRMKAAVASkqfgqeeilcpliadaciqvcpknpanfnvdNVRVAKLLggglhnstiVRGMVLKSDAVGSIKNMEKAKVAVFAggvdtsatetkgtVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVamlcqpnpddlgyvdsvsveeiGGARVTIVrnegggnsVSTVVLRGSTDSILDDLERAVDDGVNTYkamcrdsrivpgAAATEIELARRLKEfsfketglDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEhasgktkvgidlengvcadistmNVWDLYVTKFFALKYAADAACTVLRVDQiimakpaggprrdqqpgggmded
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTitrtslgpngMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELveegsenmdvrnTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGgglhnstivRGMVLKSDAVGSIKNMEKAKVAVFAGgvdtsatetkgtvLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARvtivrnegggnsvsTVVLRGstdsilddLERAVDDGVNtykamcrdsrivpGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIimakpaggprrdqqpgggmded
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIevleelveeGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAggprrdqqpgggMDED
************************DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEG***MDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMA*******************
***************************VLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQ***********************
MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA****************
******PYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK******************
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MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNxxxxxxxxxxxxxxxxxxxxxVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPGGGMDED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
Q552J0537 T-complex protein 1 subun yes no 0.959 0.972 0.520 1e-163
Q6EE31548 T-complex protein 1 subun yes no 0.974 0.967 0.507 1e-157
P42932548 T-complex protein 1 subun yes no 0.974 0.967 0.507 1e-152
Q3ZCI9548 T-complex protein 1 subun yes no 0.974 0.967 0.512 1e-150
A8X6I9548 T-complex protein 1 subun N/A no 0.988 0.981 0.468 1e-150
Q4R5J0548 T-complex protein 1 subun N/A no 0.974 0.967 0.507 1e-147
Q9N358548 T-complex protein 1 subun yes no 0.988 0.981 0.473 1e-147
Q5RAP1548 T-complex protein 1 subun yes no 0.974 0.967 0.507 1e-147
P50990548 T-complex protein 1 subun yes no 0.974 0.967 0.507 1e-147
P78921546 Probable T-complex protei yes no 0.939 0.935 0.451 1e-133
>sp|Q552J0|TCPQ_DICDI T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1 Back     alignment and function desciption
 Score =  576 bits (1485), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/526 (52%), Positives = 384/526 (73%), Gaps = 4/526 (0%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           G+  MLK+G KH +G DEA+L+NIDA KQLS ITRTSLGPNGMNKM+INHL+KLFVTNDA
Sbjct: 3   GLTDMLKDGAKHFAGKDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDA 62

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ EL+V HPAAK+LV+A + Q++E+GDG N  ++  GE LQ A  L+ MGLHPSEII
Sbjct: 63  ATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEII 122

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
           +G+ KA  K  E++E ++    +  D+ + +EV   +K+A+ASKQ+G EE L  +I +AC
Sbjct: 123 TGFEKAGAKLQEIIESMIVYNLK--DITDKKEVTKCLKSAIASKQYGYEEFLSEIITNAC 180

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
           +QV PK   NFN+DNVRV K+ GGG+ ++++++G V+  DA G+IK MEKAK+AVF  G+
Sbjct: 181 LQVLPKKAVNFNIDNVRVTKIPGGGVTDTSVIKGFVIPMDAEGTIKRMEKAKIAVFTMGI 240

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           D   TET G VLI N ++L  ++K EE  +   I A+A +G +VI+SG+ V E+ALH+ E
Sbjct: 241 DLGRTETTGKVLITNEDELLQFSKGEEDSIRETITAIANTGVKVIISGSTVSELALHYIE 300

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 366
           R+K+M+++I SKF+LRR C+  GA  +  L  P P++LGY D V VEEIG  +  I R  
Sbjct: 301 RFKIMLVRIQSKFQLRRVCKAIGATPLVKLGAPIPEELGYCDEVLVEEIGSTKCCIFRQN 360

Query: 367 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 426
              + +ST+V+RGST++ILDD+ERA+DDGVN +K MC+D R + GA A EIE +R+L+ F
Sbjct: 361 KEESEISTIVVRGSTNNILDDIERAIDDGVNVFKGMCKDGRFLAGAGAFEIEASRKLQAF 420

Query: 427 SFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 486
           +    GL QY+I ++AE+FE++P+TLAE +G ++ + IS++YA H  G T  G+D+E+G 
Sbjct: 421 ADATPGLSQYSIRQYAEAFEIIPRTLAETSGHDSSKAISNIYAAHTKGNTNYGLDIESGQ 480

Query: 487 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPR 532
              +  M+V D + +K FA+K A + A TVLRVDQIIM+KPAGGP+
Sbjct: 481 PKSVLEMDVLDAFASKLFAIKLATNTANTVLRVDQIIMSKPAGGPK 526
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Dictyostelium discoideum (taxid: 44689)
>sp|Q6EE31|TCPQ_CHICK T-complex protein 1 subunit theta OS=Gallus gallus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|P42932|TCPQ_MOUSE T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3 Back     alignment and function description
>sp|Q3ZCI9|TCPQ_BOVIN T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=1 SV=3 Back     alignment and function description
>sp|A8X6I9|TCPQ_CAEBR T-complex protein 1 subunit theta OS=Caenorhabditis briggsae GN=cct-8 PE=3 SV=1 Back     alignment and function description
>sp|Q4R5J0|TCPQ_MACFA T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1 Back     alignment and function description
>sp|Q9N358|TCPQ_CAEEL T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=cct-8 PE=1 SV=3 Back     alignment and function description
>sp|Q5RAP1|TCPQ_PONAB T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3 Back     alignment and function description
>sp|P50990|TCPQ_HUMAN T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4 Back     alignment and function description
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct8 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
356498779545 PREDICTED: T-complex protein 1 subunit t 0.998 0.996 0.890 0.0
225441629545 PREDICTED: T-complex protein 1 subunit t 0.996 0.994 0.895 0.0
356559540545 PREDICTED: T-complex protein 1 subunit t 0.998 0.996 0.890 0.0
449446760545 PREDICTED: T-complex protein 1 subunit t 0.998 0.996 0.893 0.0
224123784545 predicted protein [Populus trichocarpa] 0.998 0.996 0.899 0.0
224145979545 predicted protein [Populus trichocarpa] 0.998 0.996 0.890 0.0
118482230545 unknown [Populus trichocarpa] 0.998 0.996 0.888 0.0
118486950545 unknown [Populus trichocarpa] 0.998 0.996 0.897 0.0
242071459548 hypothetical protein SORBIDRAFT_05g02247 0.994 0.987 0.878 0.0
413925365548 putative TCP-1/cpn60 chaperonin family p 0.994 0.987 0.874 0.0
>gi|356498779|ref|XP_003518226.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/546 (89%), Positives = 524/546 (95%), Gaps = 3/546 (0%)

Query: 1   MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
           MGF++QPYGIQSMLKEGHKH+SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD
Sbjct: 1   MGFNIQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60

Query: 61  KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
           KLFVTNDA TIVNELEVQHPAAK+LVLAGKAQQEEIGDGANLTISFAGE+LQGAEELIRM
Sbjct: 61  KLFVTNDAGTIVNELEVQHPAAKVLVLAGKAQQEEIGDGANLTISFAGELLQGAEELIRM 120

Query: 121 GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
           GLHPSEIISGYTKAINKT+++L+ELVE+GS+NMDVR+ E+VI RMKAAVASKQFGQE+I+
Sbjct: 121 GLHPSEIISGYTKAINKTVQILDELVEDGSDNMDVRDKEQVISRMKAAVASKQFGQEDII 180

Query: 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
           C L+ADACIQVCPKNPANFNVDNVRVAKLLGGGLHNST+VRG+VLKSDAVG+IK  EKAK
Sbjct: 181 CSLVADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTVVRGLVLKSDAVGTIKQAEKAK 240

Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
           VAVFA GVDTSATETKGTVLIH AEQLENY+KTEEAKVE LIKAVA+SGA+VIVSG AVG
Sbjct: 241 VAVFASGVDTSATETKGTVLIHTAEQLENYSKTEEAKVEELIKAVADSGAKVIVSGGAVG 300

Query: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGA 358
           EMALHFCERYKLMVLKISSKFELRRFCRTTG+VAM  LCQPNPDDLGYVDSVSV+EIGG 
Sbjct: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLCQPNPDDLGYVDSVSVQEIGGV 360

Query: 359 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 418
           RVTIV+NE GGNSV+TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR VPGAAATEIE
Sbjct: 361 RVTIVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRFVPGAAATEIE 420

Query: 419 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 478
           LA+R+K+FSFKETGLDQYAIAKFAESFEM+P+TLAENAGLNAMEIISSLYAEHASG  KV
Sbjct: 421 LAKRVKDFSFKETGLDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNAKV 480

Query: 479 GIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQPG 538
           GIDLE G+C D+ST+++WDL+VTK FALKYAADAACTVLRVDQIIMAKPAGGPRR +QP 
Sbjct: 481 GIDLEEGICKDVSTLSIWDLHVTKLFALKYAADAACTVLRVDQIIMAKPAGGPRR-EQPA 539

Query: 539 GGMDED 544
           GGMDED
Sbjct: 540 GGMDED 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225441629|ref|XP_002282088.1| PREDICTED: T-complex protein 1 subunit theta [Vitis vinifera] gi|297739754|emb|CBI29936.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559540|ref|XP_003548057.1| PREDICTED: T-complex protein 1 subunit theta-like [Glycine max] Back     alignment and taxonomy information
>gi|449446760|ref|XP_004141139.1| PREDICTED: T-complex protein 1 subunit theta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224123784|ref|XP_002319163.1| predicted protein [Populus trichocarpa] gi|222857539|gb|EEE95086.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224145979|ref|XP_002325835.1| predicted protein [Populus trichocarpa] gi|222862710|gb|EEF00217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118482230|gb|ABK93043.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486950|gb|ABK95308.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242071459|ref|XP_002451006.1| hypothetical protein SORBIDRAFT_05g022470 [Sorghum bicolor] gi|241936849|gb|EES09994.1| hypothetical protein SORBIDRAFT_05g022470 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413925365|gb|AFW65297.1| putative TCP-1/cpn60 chaperonin family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2095948549 AT3G03960 [Arabidopsis thalian 0.970 0.961 0.832 1e-233
DICTYBASE|DDB_G0276233537 cct8 "chaperonin containing TC 0.952 0.964 0.515 6.8e-143
ZFIN|ZDB-GENE-040426-876546 cct8 "chaperonin containing TC 0.950 0.946 0.509 2.1e-141
UNIPROTKB|I3LCA2548 CCT8 "Uncharacterized protein" 0.950 0.943 0.509 4.9e-140
UNIPROTKB|Q3ZCI9548 CCT8 "T-complex protein 1 subu 0.950 0.943 0.507 1.3e-139
UNIPROTKB|E2RQ81548 CCT8 "Uncharacterized protein" 0.950 0.943 0.501 2.1e-139
UNIPROTKB|P50990548 CCT8 "T-complex protein 1 subu 0.950 0.943 0.501 9.2e-139
UNIPROTKB|Q6EE31548 CCT8 "T-complex protein 1 subu 0.950 0.943 0.501 1.2e-138
UNIPROTKB|G3X861552 G3X861 "Uncharacterized protei 0.944 0.931 0.505 1.2e-138
RGD|1305452548 Cct8 "chaperonin containing Tc 0.950 0.943 0.5 1.9e-138
TAIR|locus:2095948 AT3G03960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2254 (798.5 bits), Expect = 1.0e-233, P = 1.0e-233
 Identities = 441/530 (83%), Positives = 481/530 (90%)

Query:     1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
             +G SMQPYGIQSMLKEG++H+SGLDEAV+KNI+ACK+LSTITRTSLGPNGMNKMVINHLD
Sbjct:     2 VGMSMQPYGIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLD 61

Query:    61 KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
             KLFVTNDAATIVNELE+QHPAAKLLVLA KAQQEEIGDGANLTISFAGE+LQ AEELIRM
Sbjct:    62 KLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRM 121

Query:   121 GLHPSEIISGYTKAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
             GLHPSEIISGYTKA++K +         GSE MDVRN +EVI RM+AAVASKQFGQEEI+
Sbjct:   122 GLHPSEIISGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEII 181

Query:   181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
             C L+ DACIQVCPKNP NFNVDNVRV+KLLGGGLHNS IVRGMVLKSDAVGSIK MEKAK
Sbjct:   182 CSLVTDACIQVCPKNPTNFNVDNVRVSKLLGGGLHNSCIVRGMVLKSDAVGSIKRMEKAK 241

Query:   241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
             VAVFAGGVDT+ATETKGTVLIH+AEQLENYAKTEEAKVE LIKAVAESGA+VIVSG ++G
Sbjct:   242 VAVFAGGVDTTATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVAESGAKVIVSGGSIG 301

Query:   301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVA--MLCQPNPDDLGYVDSVSVEEIGGA 358
             EMALHFCERYK+MVLKISSKFELRRFCRT GAVA   L +P+P+DLGYVDS+SVEEIGG 
Sbjct:   302 EMALHFCERYKIMVLKISSKFELRRFCRTAGAVAHLKLSRPSPEDLGYVDSISVEEIGGV 361

Query:   359 RVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 418
              VTI RNE GGNS+STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE
Sbjct:   362 TVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 421

Query:   419 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 478
             LA+RLKE++  E GLD+YAI K+AESFE VPKTLA+NAGLNAMEII++LY  H SG TK+
Sbjct:   422 LAQRLKEYANAEIGLDKYAITKYAESFEFVPKTLADNAGLNAMEIIAALYTGHGSGNTKL 481

Query:   479 GIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPA 528
             GIDLE G C D+S   VWDL+ TK FALKYA+DAACTVLRVDQIIMAKPA
Sbjct:   482 GIDLEEGACKDVSETKVWDLFATKLFALKYASDAACTVLRVDQIIMAKPA 531
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
DICTYBASE|DDB_G0276233 cct8 "chaperonin containing TCP1 theta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-876 cct8 "chaperonin containing TCP1, subunit 8 (theta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LCA2 CCT8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCI9 CCT8 "T-complex protein 1 subunit theta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ81 CCT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P50990 CCT8 "T-complex protein 1 subunit theta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6EE31 CCT8 "T-complex protein 1 subunit theta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G3X861 G3X861 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305452 Cct8 "chaperonin containing Tcp1, subunit 8 (theta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R5J0TCPQ_MACFANo assigned EC number0.50740.97420.9671N/Ano
Q9N358TCPQ_CAEELNo assigned EC number0.47350.98890.9817yesno
Q9V2T5THSA_SULACNo assigned EC number0.33830.93010.9068yesno
Q9HN70THSA_HALSANo assigned EC number0.31280.94300.9128yesno
Q6EE31TCPQ_CHICKNo assigned EC number0.50740.97420.9671yesno
P42932TCPQ_MOUSENo assigned EC number0.50740.97420.9671yesno
P50990TCPQ_HUMANNo assigned EC number0.50740.97420.9671yesno
Q552J0TCPQ_DICDINo assigned EC number0.52090.95950.9720yesno
P48424THSA_THEACNo assigned EC number0.30430.93380.9321yesno
P50016THS_METKANo assigned EC number0.31990.93190.9302yesno
O24734THSA_SULTONo assigned EC number0.33270.94110.9159yesno
Q9V2S9THSA_SULSONo assigned EC number0.320.95580.9302yesno
Q9V2Q7THS_PYRABNo assigned EC number0.33260.93010.92yesno
O26885THSB_METTHNo assigned EC number0.33390.93380.9442yesno
O57762THS_PYRHONo assigned EC number0.33140.92830.9198yesno
Q5RAP1TCPQ_PONABNo assigned EC number0.50740.97420.9671yesno
Q9YDK6THSA_AERPENo assigned EC number0.33710.93190.9151yesno
P61111THSA_PYRKONo assigned EC number0.33640.94480.9379yesno
P47079TCPQ_YEASTNo assigned EC number0.44480.96500.9242yesno
P78921TCPQ_SCHPONo assigned EC number0.45170.93930.9358yesno
O30561THS1_HALVDNo assigned EC number0.32020.94300.9160yesno
Q3ZCI9TCPQ_BOVINNo assigned EC number0.51290.97420.9671yesno
Q58405THS_METJANo assigned EC number0.30950.89880.9022yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.699
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.679
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.655
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
  ••••••0.612
GSVIVG00018888001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (535 aa)
  ••••••0.608
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.583
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.561
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.553
GSVIVG00031075001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (573 aa)
  ••    0.530
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.519

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 0.0
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-160
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-152
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-117
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-111
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-108
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 5e-96
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 8e-88
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-75
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-75
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-74
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-73
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 7e-70
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 2e-69
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-68
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 3e-62
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 2e-61
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 2e-58
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 1e-55
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 1e-52
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-44
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-34
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 5e-33
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 7e-05
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 5e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 5e-04
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 0.001
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information 
 Score =  825 bits (2132), Expect = 0.0
 Identities = 332/533 (62%), Positives = 415/533 (77%), Gaps = 6/533 (1%)

Query: 9   GIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDA 68
           GI S+LKEG++HMSGL+EAV+KNI+ACK+LS ITRTSLGPNGMNKMVINHLDKLFVTNDA
Sbjct: 1   GIASLLKEGYRHMSGLEEAVIKNIEACKELSQITRTSLGPNGMNKMVINHLDKLFVTNDA 60

Query: 69  ATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEII 128
           ATI+ ELEVQHPAAKLLV+A + Q+ EIGDG NL I  AGE+L  AEELIRMGLHPSEII
Sbjct: 61  ATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNKAEELIRMGLHPSEII 120

Query: 129 SGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADAC 188
            GY  A+ K +EVLEELV    E  D+R+ +E+I  +KA+++SKQ+G E+ L  L+A AC
Sbjct: 121 KGYEMALKKAMEVLEELVV--WEIEDLRDKKELIKALKASISSKQYGNEDFLSQLVAKAC 178

Query: 189 IQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
             V PKNP NFNVDN+RV K++GG L NS +++GMV   +A GS+K ++KAKVAVF+  +
Sbjct: 179 STVLPKNPQNFNVDNIRVVKIMGGSLSNSEVIKGMVFNREAEGSVKRVKKAKVAVFSCPL 238

Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE 308
           DT+ TETKGTVLIHNAE+L NY+K EE ++E +IKA+A+SG  VIV+G +VG+MALH+  
Sbjct: 239 DTATTETKGTVLIHNAEELLNYSKGEENQIEAMIKAIADSGVNVIVTGGSVGDMALHYLN 298

Query: 309 RYKLMVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNE 366
           RY +MVLKI SKFELRR C+T GA  +  L  P P++LGYVDSV V EIGG +VT+ + E
Sbjct: 299 RYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELGYVDSVYVSEIGGDKVTVFKQE 358

Query: 367 GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEF 426
            G + +ST++LRGST ++LDD+ERA+DDGVN  KA+ +D R +PGA ATEIELA RL ++
Sbjct: 359 NGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELASRLTKY 418

Query: 427 SFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 486
           + K  GLDQYAI KFAE+FE++P+TLAENAGLN  E+I  LYA H  G T  GID+E   
Sbjct: 419 AEKTPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSKGIDIEAES 478

Query: 487 CA--DISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQP 537
               D S   ++D+  TK FA+K A +AA TVLRVDQIIMAKPAGGP+  Q P
Sbjct: 479 DGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQGP 531

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 531
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.78
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information 
Probab=100.00  E-value=9.3e-106  Score=869.69  Aligned_cols=524  Identities=63%  Similarity=0.991  Sum_probs=492.9

Q ss_pred             cccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHH
Q 009082           10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG   89 (544)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~   89 (544)
                      ...+++++..+.++.++++..|+.||..++++++|||||+|++|||++++|+++|||||+||+++|+++||+++|+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a   81 (531)
T TIGR02346         2 INSLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMAS   81 (531)
T ss_pred             ccccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHH
Confidence            34556776566667556999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhh
Q 009082           90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV  169 (544)
Q Consensus        90 ~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l  169 (544)
                      ++|++++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|++++...+.  +..+.+.|.++++|++
T Consensus        82 ~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~tsl  159 (531)
T TIGR02346        82 EMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--DVRNKKELIKALKASI  159 (531)
T ss_pred             HHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998863232  4467889999999999


Q ss_pred             ccccCCchhhHHHHHHHHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeecc
Q 009082          170 ASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVD  249 (544)
Q Consensus       170 ~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~  249 (544)
                      +||+.+++++|++++++|+.++++++...+++++|+|+++.||++++|++++|++|++++.++|+.++|+||+++++||+
T Consensus       160 ~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~  239 (531)
T TIGR02346       160 SSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLD  239 (531)
T ss_pred             ccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcC
Confidence            99976669999999999999998765335899999999999999999999999999999888899999999999999999


Q ss_pred             ccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHH
Q 009082          250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT  329 (544)
Q Consensus       250 ~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~  329 (544)
                      +.+++.++++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||+|+++++..+|+|||.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~  319 (531)
T TIGR02346       240 TATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKT  319 (531)
T ss_pred             CCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCe
Q 009082          330 TGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR  407 (544)
Q Consensus       330 tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~  407 (544)
                      |||+++  +++++++++|+|+.|++.++|+++|.+|+++...++.+||+|||+|+.+++|++|+++||++++++++++|+
T Consensus       320 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~  399 (531)
T TIGR02346       320 VGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNR  399 (531)
T ss_pred             HCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999  888988999999999999999999999998864488999999999999999999999999999999999999


Q ss_pred             EEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCc-
Q 009082          408 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV-  486 (544)
Q Consensus       408 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~-  486 (544)
                      +||||||+|++||.+|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|+ 
T Consensus       400 vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~  479 (531)
T TIGR02346       400 FLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESD  479 (531)
T ss_pred             EEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCc
Confidence            9999999999999999999888889999999999999999999999999999999999999999877778999999999 


Q ss_pred             -ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCC
Q 009082          487 -CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQ  535 (544)
Q Consensus       487 -i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~  535 (544)
                       ++||++.|||||+.+|+++|+.|+|+|++|||||++|..+|...+++|.
T Consensus       480 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~  529 (531)
T TIGR02346       480 GVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ  529 (531)
T ss_pred             cccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence             5999999999999999999999999999999999999998766666554

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-142
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-122
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-78
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-78
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 9e-78
1a6d_A545 Thermosome From T. Acidophilum Length = 545 4e-67
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 5e-66
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-64
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 4e-63
3izi_A513 Mm-Cpn Rls With Atp Length = 513 1e-62
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 2e-62
3izh_A513 Mm-Cpn D386a With Atp Length = 513 7e-62
1a6d_B543 Thermosome From T. Acidophilum Length = 543 6e-58
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 5e-57
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-57
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 9e-57
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 2e-56
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-55
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-55
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 4e-55
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 7e-55
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-53
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-50
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-49
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-49
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-44
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-43
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-42
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-40
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-40
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-29
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-21
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 1e-04
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure 
Iteration: 1

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/515 (50%), Positives = 370/515 (71%), Gaps = 7/515 (1%)
Query: 16  EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
           EG KH SGL+EAV +NI ACK+L+  TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1   EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 76  EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
           EVQHPAAK++V+A   Q++E+GDG N  + FAG +L+ AEEL+R+GL  SE+I GY  A 
Sbjct: 61  EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 136 NKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
            K            ++N+  R+ +EV   +  +V SKQ+G E  L  LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAKNL--RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFP-D 177
Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
             +FNVDN+RV K+LG G+H+S+++ GMV K +  G + +++ AK+AV++   D   TET
Sbjct: 178 SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237
Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
           KGTVLI +AE+L N++K EE  ++  +KA+A++GA V+V+G  V +MALH+  +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297
Query: 316 KISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 373
           +++SK++LRR C+T GA A+  L  P  +++G+ DSV + E+G  +V + ++E    ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357
Query: 374 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGL 433
           T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG  ATEIELA+++  +     GL
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGL 417
Query: 434 DQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCA--DIS 491
           +QYAI KFAE+FE +P+ LAEN+G+ A E+IS LYA H  G   VG+D+E  V A  D+ 
Sbjct: 418 EQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477
Query: 492 TMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAK 526
              V D Y+ K++A+K A +AA TVLRVDQIIMAK
Sbjct: 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 512
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-138
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-138
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-138
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-138
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-136
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-136
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 1e-136
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-133
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-132
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-132
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-131
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-131
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-131
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-131
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-129
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-128
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-128
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-126
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 1e-122
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-110
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 3e-19
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 6e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
 Score =  645 bits (1665), Expect = 0.0
 Identities = 243/569 (42%), Positives = 364/569 (63%), Gaps = 27/569 (4%)

Query: 1   MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
           M   +       + K+G+   S  D  ++K+I A ++L  +  TS+GP G NK+++NHL 
Sbjct: 1   MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLG 60

Query: 61  KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
           K+ +TNDAAT++ EL++ HPA K+LV+A + Q+ ++GDG NL +  AGE+L  +E+LI M
Sbjct: 61  KIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISM 120

Query: 121 GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180
           GL   EII GY  A   T++ L+E+V    E  D  +  E++  +K  ++SK++G E+IL
Sbjct: 121 GLSAVEIIQGYNMARKFTLKELDEMVV--GEITDKNDKNELLKMIKPVISSKKYGSEDIL 178

Query: 181 CPLIADACIQVCPKNPAN-----FNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSI-- 233
             L+++A   V P          FNVD++RV K++GG L NST+++GMV   +  G +  
Sbjct: 179 SELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS 238

Query: 234 -KNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEV 292
               +K KVAVF   +D + TETKGTVL+HNA+++ +++K EE +++ ++K +A+ G E 
Sbjct: 239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVEC 298

Query: 293 IVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA--VAMLCQPNPDDLGYVDSV 350
           IV+GA VGE+ALH+  RY ++VLK+ SKFELRR CR  GA  +  L  P P++LG V++V
Sbjct: 299 IVAGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETV 358

Query: 351 SVEEIGGARVTIVRNEGGGNS-VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS--R 407
              EIGG RVT+ + E G  S  ST++LRG+T + LDD+ERA+DDGV   K + + S  +
Sbjct: 359 KTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGK 418

Query: 408 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 467
           ++PGA ATEIEL  R+ ++  +  GL Q AI +FA +FE+VP+TLAE AGL+  E++ +L
Sbjct: 419 LLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL 478

Query: 468 YAEHASGKTKV--------GIDLE---NGVCADISTMNVWDLYVTKFFALKYAADAACTV 516
           YA H   +           G+D++   +    DI   N++D+  TK FA+  A +AA TV
Sbjct: 479 YAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTV 538

Query: 517 LRVDQIIMAKPAGGPRRDQQPG-GGMDED 544
           L +DQIIMAK AGGPR  Q P  G  D++
Sbjct: 539 LSIDQIIMAKKAGGPRAPQGPRPGNWDQE 567
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.05
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 98.97
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.92
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
Probab=100.00  E-value=5.5e-118  Score=968.81  Aligned_cols=542  Identities=44%  Similarity=0.755  Sum_probs=487.3

Q ss_pred             CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccCh
Q 009082            1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP   80 (544)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP   80 (544)
                      |.|.+|+.+...+|++++++.+|.++++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP   80 (568)
T 3p9d_H            1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP   80 (568)
T ss_dssp             ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred             CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence            78899999999999999999999778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHH
Q 009082           81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE  160 (544)
Q Consensus        81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~  160 (544)
                      +|+|++++|++|++++||||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+...  +..+++.
T Consensus        81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~  158 (568)
T 3p9d_H           81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE  158 (568)
T ss_dssp             HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred             HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999886322  5678999


Q ss_pred             HHHHHHHhhccccCCchhhHHHHHHHHHHHhCCC-----CCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCccc
Q 009082          161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN  235 (544)
Q Consensus       161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~-----~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~  235 (544)
                      |.++++|+++||+.+++++|++|+++|+.+++++     +..+||+++|+|++++||+++||++++|++|++++.+||++
T Consensus       159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~  238 (568)
T 3p9d_H          159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS  238 (568)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred             HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence            9999999999997666699999999999999763     33358999999999999999999999999999999999999


Q ss_pred             cc---CceEEEEEeeccccccccceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCe
Q 009082          236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL  312 (544)
Q Consensus       236 ~~---n~kIlll~~~l~~~~~~~~~~~~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I  312 (544)
                      ++   ||||++++|+|+++++++++++.+++++++..+.++|++++++++++|++.|++|||++++|++.+++||.++||
T Consensus       239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI  318 (568)
T 3p9d_H          239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI  318 (568)
T ss_dssp             CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred             EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence            99   999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCHHHHHHHHHHhCCeEe--cCCCCCCCCccceeEEEEEECCeEEEEEEecCC-CcceEEEEEeCCCHhHHHHHH
Q 009082          313 MVLKISSKFELRRFCRTTGAVAM--LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE  389 (544)
Q Consensus       313 ~vv~~v~~~~le~Ia~~tGa~ii--l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIll~g~t~~~l~e~~  389 (544)
                      ++++++++.+|+|||++|||+++  +++++++++|+|+.|++..+|+++|++|++|+. .+++|||+|||+|+.+++|.|
T Consensus       319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e  398 (568)
T 3p9d_H          319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE  398 (568)
T ss_dssp             EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence            99999999999999999999999  899999999999999999999999999999962 388999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc--CCeEEeCCChhHHHHHHHHHHhhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 009082          390 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL  467 (544)
Q Consensus       390 ~~i~dal~~l~~~~~--~~~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l  467 (544)
                      |++||||+++|++++  ++++|||||++|++|+.+|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|
T Consensus       399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l  478 (568)
T 3p9d_H          399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL  478 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999999999  889999999999999999999999899999999999999999999999999999999999999


Q ss_pred             HHHHhc--------CCCeeeEecCCCc---ccccccCccccchHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCC
Q 009082          468 YAEHAS--------GKTKVGIDLENGV---CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDQQ  536 (544)
Q Consensus       468 ~~~~~~--------~~~~~gid~~~~~---i~d~~~~gi~dp~~vk~~~l~~A~e~~~~iL~iD~ii~~~~~~~~~~~~~  536 (544)
                      ++.|.+        ++.++|||+.+|+   +.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.++|++|++
T Consensus       479 ~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~~~~~~~~~  558 (568)
T 3p9d_H          479 YAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQG  558 (568)
T ss_dssp             HHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC--------------------
T ss_pred             HHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccccCCCCCCCC
Confidence            998865        4568999999997   99999999999999999999999999999999999999999999998864


Q ss_pred             C-CCCCCCC
Q 009082          537 P-GGGMDED  544 (544)
Q Consensus       537 ~-~~~~~~~  544 (544)
                      | +++||||
T Consensus       559 ~~~~~~~~~  567 (568)
T 3p9d_H          559 PRPGNWDQE  567 (568)
T ss_dssp             ---------
T ss_pred             CCCCCCCCC
Confidence            4 3599997
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 544
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-34
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-25
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 5e-33
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-25
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-28
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-18
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 7e-26
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 5e-25
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 2e-23
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 8e-23
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 6e-14
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 7e-12
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 6e-12
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 9e-10
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-04
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 2e-04
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 7/239 (2%)

Query: 25  DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKL 84
             A   NI+A K ++   RT+LGP GM+KM+++ +  + ++ND ATI+ E++V+HP AK+
Sbjct: 5   KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKM 64

Query: 85  LVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE 144
           +V   KAQ   +GDG    +  +GE+L+ AE L+  G+HP+ I +GY  A+N+  ++++E
Sbjct: 65  IVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE 124

Query: 145 LVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNV 204
           + E+           E+  R+ A  A+   G+E++     A A   +      N  +D +
Sbjct: 125 IAEKSFLWGGGAVEAELAMRL-AKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPI 183

Query: 205 RVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNM---EKAKVAVFAGGVDTSATETKGTVL 260
                L        I  G+ L ++ VG +K     +  +V   A     SA E    +L
Sbjct: 184 NTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHA---LESAVEVATMIL 239
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.96
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.96
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.95
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.89
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.55
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.52
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.31
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.09
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.99
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.94
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.93
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 93.87
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 93.23
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 88.23
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 87.91
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 82.7
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=6e-52  Score=401.68  Aligned_cols=242  Identities=38%  Similarity=0.608  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCCccceeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCCchhHHH
Q 009082           26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTIS  105 (544)
Q Consensus        26 ~~~~~~~~~~~~l~~~v~sslGP~G~~kmi~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vl  105 (544)
                      ++++.|+.+|+.+++++++||||+|++|||+++.|++++||||+||++++.++||.++++.+++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCHHHHHHHHHHhhccccCCchhhHHHHHH
Q 009082          106 FAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIA  185 (544)
Q Consensus       106 L~~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ls~lv~  185 (544)
                      |+++||+++.+++.+|+||..|++||+.|.+.+++.|++++.+ +   .+.                             
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~-v---~~~-----------------------------  128 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK-I---AYA-----------------------------  128 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE-C---EEE-----------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccc-c---ccc-----------------------------
Confidence            9999999999999999999999999999999999888776553 1   000                             


Q ss_pred             HHHHHhCCCCCCcccchhhhhhhcCCCCCCCceeEeeEEEeecCCCCcccccCceEEEEEeeccccccccceEEEEcCHH
Q 009082          186 DACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAE  265 (544)
Q Consensus       186 ~a~~~~~~~~~~~~~~~~I~i~k~~Gg~~~dS~li~Givl~~~~~~~~~~~~n~kIlll~~~l~~~~~~~~~~~~i~~~~  265 (544)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCccChHHHHHHHHCCeEEEEecCHHHHHHHHHHhCCeEecCCCCCCCCc
Q 009082          266 QLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLCQPNPDDLG  345 (544)
Q Consensus       266 ~l~~~~~~E~~~l~~~v~~i~~~~v~lVi~~~~i~~~~l~~l~~~~I~vv~~v~~~~le~Ia~~tGa~iil~~l~~~~lG  345 (544)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeEEEEEECCeEEEEEEecCCCcceEEEEEeCCCHhHHHHHHHHHHHHHHHHHHHhcCCeEEeCCChhHHHHHHHHHH
Q 009082          346 YVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKE  425 (544)
Q Consensus       346 ~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIll~g~t~~~l~e~~~~i~dal~~l~~~~~~~~vvpGGG~~E~~l~~~L~~  425 (544)
                                                                                      ||||++|+.+|..|++
T Consensus       129 ----------------------------------------------------------------~ggGa~e~~~a~~l~~  144 (243)
T d1a6db1         129 ----------------------------------------------------------------AGGGATAAEIAFRLRS  144 (243)
T ss_dssp             ----------------------------------------------------------------ETTTHHHHHHHHHHHH
T ss_pred             ----------------------------------------------------------------cCCCchhHHHHHHHhh
Confidence                                                                            0699999999999999


Q ss_pred             hhccccChHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCeeeEecCCCcccccccCccccchHHHHHH
Q 009082          426 FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFA  505 (544)
Q Consensus       426 ~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NsG~d~~~~l~~l~~~~~~~~~~~gid~~~~~i~d~~~~gi~dp~~vk~~~  505 (544)
                      +++++++++|+++++||+||+.||++|++|+|+|+.+++.+|+..|.+++.++|+|+.+|++.||.+.|||||+.+|+++
T Consensus       145 ~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~a  224 (243)
T d1a6db1         145 YAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQA  224 (243)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhhhhc
Q 009082          506 LKYAADAACTVLRVDQIIM  524 (544)
Q Consensus       506 l~~A~e~~~~iL~iD~ii~  524 (544)
                      |+.|+|+|++|||||+||.
T Consensus       225 i~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         225 IESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999873
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure