Citrus Sinensis ID: 009093

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS
cccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHcccccccccccEEEEEEccccccccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccccccEEEEEEccccccccccccccHHHHHccc
ccccccccccccccccccEEEEccccccccccccEEEEccccccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccEEEEEcccccccccEEEHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHEHHHHHHHHHccccccEEEccccccccccccccccEEEEEcccccccccccccccEEEEEEcccccccccccHHcHHHHHHcc
MESEGETGVKSiknvggqvcqicgdnvgktvdgnpfvacdvcafpvcrpcyeyerkdgnqscpqcktrykkhkgspailgdreedgdaddgasdfnyssenqnQKQKISERMLSWHMrygqgedasapkydnevshnhiprltggqevsgelsaaspehlsmaspgvgpgkrihysgdinqspsirvvdpvrefgspglgnvawkervdgwkmkqeknvvpmstgqatsergggdidastdvlvddsllndearqplsrkvpipssrinpyRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFdqfpkwlpvnreTYLDRLSLryeregepsqlAAVDIFVStvdplkepplvtaNTVLSILAvdypvdkvscyvsddgaAMLTFEALSETSEFARKWVpfckkynieprapewyfaqkidylkdkvqpsfvKDRRAMKREYEEFKIRINGLVAKaqkipeegwvmqdgtpwpgnntrdhpgMIQVFLgenggldaegnelprlvyvsrekrpgfqhhkkaGAMNALVSS
mesegetgvksiknvggQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYerkdgnqscpqcktrykkhkgspailgdreedGDADDGASdfnyssenqnqkqKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVrefgspglgnvawkervdgwkmkqeknvvpmstgqatsergggdidasTDVLVDDSLlndearqplsrkvpipssrinpyRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKidylkdkvqpsfvkDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSRekrpgfqhhkkagamnalvss
MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILgdreedgdaddgasdFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMViflrliilgiflyyriKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS
***********IKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER*********************************************************************************************************************************IRVVDPVREFGSPGLGNVAWKERVDGWK******************************************************RINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAE*NELPRLVYV***********************
*********************ICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA************************************************************************************************************NVAWKERV*************************************************SRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDY***KVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMI************EGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS
**********SIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT********PAILGDREEDGDADDGASDFNY**********ISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKN***************GDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS
***************GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK*H***************ADDGASDFNYSS*NQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEK*********************************DEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKK*GA**ALVS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query544 2.2.26 [Sep-21-2011]
Q941L0 1065 Cellulose synthase A cata yes no 0.972 0.496 0.809 0.0
Q84ZN6 1081 Probable cellulose syntha yes no 0.965 0.485 0.730 0.0
Q84M43 1073 Probable cellulose syntha no no 0.959 0.486 0.729 0.0
A2XN66 1073 Probable cellulose syntha N/A no 0.959 0.486 0.729 0.0
O48946 1081 Cellulose synthase A cata no no 0.961 0.483 0.644 0.0
Q69V23 1093 Probable cellulose syntha no no 0.966 0.481 0.641 0.0
Q9SKJ5 1065 Probable cellulose syntha no no 0.948 0.484 0.610 0.0
Q6YVM4 1092 Probable cellulose syntha no no 0.924 0.460 0.647 0.0
Q851L8 1092 Probable cellulose syntha no no 0.959 0.478 0.624 0.0
A2XNT2 1092 Probable cellulose syntha N/A no 0.959 0.478 0.624 0.0
>sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2 Back     alignment and function desciption
 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/542 (80%), Positives = 479/542 (88%), Gaps = 13/542 (2%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGET  K +KN+  Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKTRYK+ KGSPAI GD++EDG AD+G  +FNY      QK+KISERML WH+  G
Sbjct: 61  SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115

Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
           +GE+   P+YD EVSHNH+PRLT  Q+ SGE SAASPE LS++S   G GKR+ YS D+N
Sbjct: 116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174

Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
           QSP+ R+VDPV      GLGNVAWKERVDGWKMKQEKN  P+ST QA SERGG DIDAST
Sbjct: 175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227

Query: 241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIAL 300
           D+L D++LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL +FL+YRI NPV NA AL
Sbjct: 228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287

Query: 301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
           WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct: 288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347

Query: 361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
           LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct: 348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407

Query: 421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
           IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct: 408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467

Query: 481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
           QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct: 468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527

Query: 541 LV 542
           LV
Sbjct: 528 LV 529
Catalytic subunit of cellulose synthase terminal complexes ('rosettes'), required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation. Involved in the primary cell wall formation, especially in roots.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 2
>sp|Q84ZN6|CESA8_ORYSJ Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1 Back     alignment and function description
>sp|Q84M43|CESA2_ORYSJ Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1 Back     alignment and function description
>sp|A2XN66|CESA2_ORYSI Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1 Back     alignment and function description
>sp|O48946|CESA1_ARATH Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1 Back     alignment and function description
>sp|Q69V23|CESA3_ORYSJ Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKJ5|CESAA_ARATH Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1 Back     alignment and function description
>sp|Q6YVM4|CESA6_ORYSJ Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1 Back     alignment and function description
>sp|Q851L8|CESA5_ORYSJ Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1 Back     alignment and function description
>sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
255582781 1085 Cellulose synthase A catalytic subunit 6 0.996 0.499 0.883 0.0
183211890 1084 cellulose synthase [Betula platyphylla] 0.996 0.5 0.884 0.0
429326428 1079 cellulose synthase [Populus tomentosa] 0.996 0.502 0.889 0.0
307557871 1075 cellulose synthase [Leucaena leucocephal 0.983 0.497 0.873 0.0
224106083 1079 predicted protein [Populus trichocarpa] 0.996 0.502 0.880 0.0
385718955 1081 cellulose synthase 3 [Paeonia lactiflora 0.992 0.499 0.864 0.0
49615365 1075 CesA2 [Acacia mangium] 0.983 0.497 0.869 0.0
224055195 1081 cellulose synthase [Populus trichocarpa] 0.996 0.501 0.886 0.0
332356349 1079 cellulose synthase [Populus tomentosa] 0.996 0.502 0.878 0.0
429326434 1079 cellulose synthase [Populus tomentosa] 0.996 0.502 0.876 0.0
>gi|255582781|ref|XP_002532166.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] gi|223528153|gb|EEF30219.1| Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/548 (88%), Positives = 507/548 (92%), Gaps = 6/548 (1%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGETG K +K+VG QVCQIC DNVG T+DG+PFVAC+VCAFPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETGAKPVKSVGRQVCQICSDNVGTTLDGDPFVACNVCAFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKTRYK+ KGSPAILGDREED DADDGA DFNY +E QNQ+QKI+ERMLSW M YG
Sbjct: 61  SCPQCKTRYKRQKGSPAILGDREEDCDADDGAKDFNYPTETQNQRQKIAERMLSWQMNYG 120

Query: 121 QGED-ASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIH---YS 176
           +GED   APKYD EVSHNHIP LT G EVSGELSAASPEH+SMASPGVG  KRIH   Y+
Sbjct: 121 RGEDDVGAPKYDKEVSHNHIPLLTNGHEVSGELSAASPEHVSMASPGVGGAKRIHTLPYA 180

Query: 177 GDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQE--KNVVPMSTGQATSERGGG 234
            DIN SP+ RVVDPVREFGSPGLGNVAWKERVDGWKMKQ+  KNV+PMS+GQA SERG G
Sbjct: 181 ADINASPNPRVVDPVREFGSPGLGNVAWKERVDGWKMKQDPVKNVIPMSSGQAPSERGVG 240

Query: 235 DIDASTDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPV 294
           DIDASTDVLVDDSLLNDEARQPLSRKV IPSSRINPYRMVI LRLIIL IFL+YRI NPV
Sbjct: 241 DIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPV 300

Query: 295 HNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIF 354
            NA ALWLISVICEIWFAISWI DQFPKWLP+NRETYLDRLSLRY+REGEPSQLAAVDIF
Sbjct: 301 TNAYALWLISVICEIWFAISWILDQFPKWLPINRETYLDRLSLRYDREGEPSQLAAVDIF 360

Query: 355 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 414
           VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP
Sbjct: 361 VSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVP 420

Query: 415 FCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIP 474
           FCKKYNIEPRAPEWYF QKIDYLKDKVQ SFVK+RRAMKREYEEFK+ INGLVAKAQKIP
Sbjct: 421 FCKKYNIEPRAPEWYFTQKIDYLKDKVQTSFVKERRAMKREYEEFKVHINGLVAKAQKIP 480

Query: 475 EEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKK 534
           EEGW+MQDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKK
Sbjct: 481 EEGWIMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKK 540

Query: 535 AGAMNALV 542
           AGAMNALV
Sbjct: 541 AGAMNALV 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|183211890|gb|ACC59195.1| cellulose synthase [Betula platyphylla] Back     alignment and taxonomy information
>gi|429326428|gb|AFZ78554.1| cellulose synthase [Populus tomentosa] Back     alignment and taxonomy information
>gi|307557871|gb|ACU87559.2| cellulose synthase [Leucaena leucocephala] Back     alignment and taxonomy information
>gi|224106083|ref|XP_002314037.1| predicted protein [Populus trichocarpa] gi|222850445|gb|EEE87992.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|385718955|gb|AFI71894.1| cellulose synthase 3 [Paeonia lactiflora] Back     alignment and taxonomy information
>gi|49615365|gb|AAT66941.1| CesA2 [Acacia mangium] Back     alignment and taxonomy information
>gi|224055195|ref|XP_002298432.1| cellulose synthase [Populus trichocarpa] gi|222845690|gb|EEE83237.1| cellulose synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|332356349|gb|AEE60898.1| cellulose synthase [Populus tomentosa] Back     alignment and taxonomy information
>gi|429326434|gb|AFZ78557.1| cellulose synthase [Populus tomentosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query544
TAIR|locus:2156789 1065 CEV1 "CONSTITUTIVE EXPRESSION 0.972 0.496 0.774 4.3e-228
TAIR|locus:2127776 1081 CESA1 "cellulose synthase 1" [ 0.955 0.481 0.619 4.8e-181
TAIR|locus:2040080 1065 CESA10 "cellulose synthase 10" 0.722 0.369 0.658 1.6e-169
TAIR|locus:2178193 1069 CESA5 "cellulose synthase 5" [ 0.722 0.367 0.643 1.1e-168
TAIR|locus:2136308 1084 CESA2 "cellulose synthase A2" 0.952 0.477 0.580 2.6e-166
TAIR|locus:2178935 1026 IRX3 "IRREGULAR XYLEM 3" [Arab 0.540 0.286 0.785 8.5e-165
TAIR|locus:2176090 1084 CESA6 "cellulose synthase 6" [ 0.948 0.476 0.579 7.1e-164
TAIR|locus:2052576 1088 CESA9 "cellulose synthase A9" 0.955 0.477 0.564 1.4e-160
TAIR|locus:2172457 1049 CESA4 "cellulose synthase A4" 0.729 0.378 0.603 1e-154
TAIR|locus:2124167 985 IRX1 "IRREGULAR XYLEM 1" [Arab 0.630 0.348 0.675 2.4e-138
TAIR|locus:2156789 CEV1 "CONSTITUTIVE EXPRESSION OF VSP 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2201 (779.8 bits), Expect = 4.3e-228, P = 4.3e-228
 Identities = 420/542 (77%), Positives = 453/542 (83%)

Query:     1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
             MESEGET  K +KN+  Q CQIC DNVGKTVDG+ FVACD+C+FPVCRPCYEYERKDGNQ
Sbjct:     1 MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQ 60

Query:    61 SCPQCKTRYKKHKGSPAILXXXXXXXXXXXXXXXFNYSSENQNQKQKISERMLSWHMRYG 120
             SCPQCKTRYK+ KGSPAI                FNY      QK+KISERML WH+  G
Sbjct:    61 SCPQCKTRYKRLKGSPAIPGDKDEDGLADEGTVEFNYP-----QKEKISERMLGWHLTRG 115

Query:   121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
             +GE+   P+YD EVSHNH+PRLT  Q+ SGE SAASPE LS++S   G GKR+ YS D+N
Sbjct:   116 KGEEMGEPQYDKEVSHNHLPRLTSRQDTSGEFSAASPERLSVSSTIAG-GKRLPYSSDVN 174

Query:   181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAST 240
             QSP+ R+VDPV      GLGNVAWKERVDGWKMKQEKN  P+ST QA SERGG DIDAST
Sbjct:   175 QSPNRRIVDPV------GLGNVAWKERVDGWKMKQEKNTGPVST-QAASERGGVDIDAST 227

Query:   241 DVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVXXXXXXXXXXXXXXXXKNPVHNAIAL 300
             D+L D++LLNDEARQPLSRKV IPSSRINPYRMV                 NPV NA AL
Sbjct:   228 DILADEALLNDEARQPLSRKVSIPSSRINPYRMVIMLRLVILCLFLHYRITNPVPNAFAL 287

Query:   301 WLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDP 360
             WL+SVICEIWFA+SWI DQFPKW PVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVDP
Sbjct:   288 WLVSVICEIWFALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDP 347

Query:   361 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYN 420
             LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML+FE+L+ETSEFARKWVPFCKKY+
Sbjct:   348 LKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYS 407

Query:   421 IEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVM 480
             IEPRAPEWYFA KIDYLKDKVQ SFVKDRRAMKREYEEFKIRIN LV+KA K PEEGWVM
Sbjct:   408 IEPRAPEWYFAAKIDYLKDKVQTSFVKDRRAMKREYEEFKIRINALVSKALKCPEEGWVM 467

Query:   481 QDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 540
             QDGTPWPGNNTRDHPGMIQVFLG+NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA
Sbjct:   468 QDGTPWPGNNTRDHPGMIQVFLGQNGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNA 527

Query:   541 LV 542
             LV
Sbjct:   528 LV 529
GO:0005886 "plasma membrane" evidence=ISM;IDA;TAS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0016759 "cellulose synthase activity" evidence=ISS;IMP
GO:0016760 "cellulose synthase (UDP-forming) activity" evidence=IEA
GO:0030244 "cellulose biosynthetic process" evidence=IEA;IMP
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0009833 "primary cell wall biogenesis" evidence=IMP;TAS
GO:0009809 "lignin biosynthetic process" evidence=IGI
GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI
GO:0006952 "defense response" evidence=TAS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042546 "cell wall biogenesis" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2127776 CESA1 "cellulose synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040080 CESA10 "cellulose synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178193 CESA5 "cellulose synthase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136308 CESA2 "cellulose synthase A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178935 IRX3 "IRREGULAR XYLEM 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176090 CESA6 "cellulose synthase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052576 CESA9 "cellulose synthase A9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172457 CESA4 "cellulose synthase A4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124167 IRX1 "IRREGULAR XYLEM 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q941L0CESA3_ARATH2, ., 4, ., 1, ., 1, 20.80990.97240.4967yesno
Q84ZN6CESA8_ORYSJ2, ., 4, ., 1, ., 1, 20.73090.96500.4856yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.921
4th Layer2.4.1.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0979
UDP-glucose-1,4-beta-D-glucan 4-beta-D-glucosyltransferase (EC-2.4.1.12) (1079 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
PLN02638 1079 PLN02638, PLN02638, cellulose synthase A (UDP-form 0.0
PLN02400 1085 PLN02400, PLN02400, cellulose synthase 0.0
PLN02436 1094 PLN02436, PLN02436, cellulose synthase A 0.0
PLN02189 1040 PLN02189, PLN02189, cellulose synthase 0.0
PLN02915 1044 PLN02915, PLN02915, cellulose synthase A [UDP-form 0.0
PLN02195 977 PLN02195, PLN02195, cellulose synthase A 0.0
pfam03552 716 pfam03552, Cellulose_synt, Cellulose synthase 1e-152
PLN02248 1135 PLN02248, PLN02248, cellulose synthase-like protei 1e-139
PLN02190 756 PLN02190, PLN02190, cellulose synthase-like protei 3e-64
PLN02893 734 PLN02893, PLN02893, Cellulose synthase-like protei 1e-53
PLN02195 977 PLN02195, PLN02195, cellulose synthase A 2e-10
TIGR03030 713 TIGR03030, CelA, cellulose synthase catalytic subu 2e-08
cd06421234 cd06421, CESA_CelA_like, CESA_CelA_like are involv 3e-05
pfam1444655 pfam14446, Prok-RING_1, Prokaryotic RING finger fa 2e-04
PRK11498 852 PRK11498, bcsA, cellulose synthase catalytic subun 0.001
PLN02248 1135 PLN02248, PLN02248, cellulose synthase-like protei 0.003
pfam0062851 pfam00628, PHD, PHD-finger 0.004
>gnl|CDD|215343 PLN02638, PLN02638, cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information 
 Score = 1108 bits (2868), Expect = 0.0
 Identities = 485/543 (89%), Positives = 508/543 (93%), Gaps = 2/543 (0%)

Query: 1   MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQ 60
           MESEGETG K +K+ GGQVCQICGDNVGKTVDG PFVACDVCAFPVCRPCYEYERKDGNQ
Sbjct: 1   MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQ 60

Query: 61  SCPQCKTRYKKHKGSPAILGDREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYG 120
           SCPQCKT+YK+HKGSPAILGD EEDGDADDGASDFNY S NQ+QKQKI+ERMLSW M  G
Sbjct: 61  SCPQCKTKYKRHKGSPAILGDEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSG 120

Query: 121 QGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRIHYSGDIN 180
           +GED  AP YD EVSHNHIP LT GQ VSGELSAASPE LSMASPG G GKRI Y+ D+N
Sbjct: 121 RGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAG-GKRIPYASDVN 179

Query: 181 QSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSE-RGGGDIDAS 239
           QSP+IRVVDPVREFGSPGLGNVAWKERVDGWKMKQ+KN +PMSTG A SE RGGGDIDAS
Sbjct: 180 QSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS 239

Query: 240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIA 299
           TDVL+DD+LLNDEARQPLSRKV IPSSRINPYRMVI LRL+IL IFL+YRI NPV NA A
Sbjct: 240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYA 299

Query: 300 LWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVD 359
           LWLISVICEIWFA+SWI DQFPKWLPVNRETYLDRL+LRY+REGEPSQLAAVDIFVSTVD
Sbjct: 300 LWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVD 359

Query: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419
           PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY
Sbjct: 360 PLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419

Query: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 479
           NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFK+RINGLVAKAQK+PEEGW+
Sbjct: 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI 479

Query: 480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMN 539
           MQDGTPWPGNNTRDHPGMIQVFLG +GGLD EGNELPRLVYVSREKRPGFQHHKKAGAMN
Sbjct: 480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMN 539

Query: 540 ALV 542
           ALV
Sbjct: 540 ALV 542

Length = 1079
>gnl|CDD|215224 PLN02400, PLN02400, cellulose synthase Back     alignment and domain information
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A Back     alignment and domain information
>gnl|CDD|215121 PLN02189, PLN02189, cellulose synthase Back     alignment and domain information
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215122 PLN02190, PLN02190, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A Back     alignment and domain information
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>gnl|CDD|222758 pfam14446, Prok-RING_1, Prokaryotic RING finger family 1 Back     alignment and domain information
>gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 544
PLN02638 1079 cellulose synthase A (UDP-forming), catalytic subu 100.0
PLN02400 1085 cellulose synthase 100.0
PLN02436 1094 cellulose synthase A 100.0
PLN02915 1044 cellulose synthase A [UDP-forming], catalytic subu 100.0
PLN02189 1040 cellulose synthase 100.0
PLN02195 977 cellulose synthase A 100.0
PLN02248 1135 cellulose synthase-like protein 100.0
PLN02190 756 cellulose synthase-like protein 100.0
PLN02893 734 Cellulose synthase-like protein 100.0
PF03552 720 Cellulose_synt: Cellulose synthase; InterPro: IPR0 100.0
PF1456980 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A. 100.0
TIGR03030 713 CelA cellulose synthase catalytic subunit (UDP-for 99.71
PRK11498 852 bcsA cellulose synthase catalytic subunit; Provisi 99.65
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 99.16
PRK05454 691 glucosyltransferase MdoH; Provisional 98.32
COG1215 439 Glycosyltransferases, probably involved in cell wa 98.27
TIGR03111 439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 98.13
PRK14583 444 hmsR N-glycosyltransferase; Provisional 97.72
COG5175480 MOT2 Transcriptional repressor [Transcription] 97.6
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 97.3
TIGR03469 384 HonB hopene-associated glycosyltransferase HpnB. T 97.12
PRK11204 420 N-glycosyltransferase; Provisional 97.03
cd04190244 Chitin_synth_C C-terminal domain of Chitin Synthas 96.92
cd04191254 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon 96.91
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 96.86
TIGR03472 373 HpnI hopanoid biosynthesis associated glycosyl tra 96.71
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 96.56
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 96.43
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 96.38
cd06438183 EpsO_like EpsO protein participates in the methano 96.19
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 96.11
PRK14716 504 bacteriophage N4 adsorption protein B; Provisional 96.0
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 95.94
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 95.86
cd04196214 GT_2_like_d Subfamily of Glycosyltransferase Famil 95.8
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 95.39
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 95.28
PRK11234 727 nfrB bacteriophage N4 adsorption protein B; Provis 95.18
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 95.07
cd04184202 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot 95.06
COG0463291 WcaA Glycosyltransferases involved in cell wall bi 94.71
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 94.58
PTZ00260333 dolichyl-phosphate beta-glucosyltransferase; Provi 94.53
cd06433202 GT_2_WfgS_like WfgS and WfeV are involved in O-ant 93.69
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 93.28
cd06423180 CESA_like CESA_like is the cellulose synthase supe 93.25
PRK15489 703 nfrB bacteriophage N4 adsorption protein B; Provis 93.16
cd0016245 RING RING-finger (Really Interesting New Gene) dom 92.84
PF00535169 Glycos_transf_2: Glycosyl transferase family 2; In 92.81
cd02522221 GT_2_like_a GT_2_like_a represents a glycosyltrans 92.22
PRK10018279 putative glycosyl transferase; Provisional 91.97
PLN02726243 dolichyl-phosphate beta-D-mannosyltransferase 91.74
cd04185202 GT_2_like_b Subfamily of Glycosyltransferase Famil 91.7
cd04195201 GT2_AmsE_like GT2_AmsE_like is involved in exopoly 91.67
PF05290140 Baculo_IE-1: Baculovirus immediate-early protein ( 91.54
cd02510 299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 90.75
cd06913219 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran 90.56
cd06436191 GlcNAc-1-P_transferase N-acetyl-glucosamine transf 90.44
PRK10073 328 putative glycosyl transferase; Provisional 90.33
cd04179185 DPM_DPG-synthase_like DPM_DPG-synthase_like is a m 89.98
cd06420182 GT2_Chondriotin_Pol_N N-terminal domain of Chondro 89.46
KOG2068327 consensus MOT2 transcription factor [Transcription 88.69
smart0050463 Ubox Modified RING finger domain. Modified RING fi 87.48
PRK10063248 putative glycosyl transferase; Provisional 87.34
PHA02929238 N1R/p28-like protein; Provisional 86.77
cd00761156 Glyco_tranf_GTA_type Glycosyltransferase family A 86.36
cd06442224 DPM1_like DPM1_like represents putative enzymes si 86.29
PRK13915306 putative glucosyl-3-phosphoglycerate synthase; Pro 85.45
KOG3800300 consensus Predicted E3 ubiquitin ligase containing 84.77
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 83.97
cd04188211 DPG_synthase DPG_synthase is involved in protein N 83.57
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 82.34
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit Back     alignment and domain information 
Probab=100.00  E-value=7e-188  Score=1566.65  Aligned_cols=543  Identities=89%  Similarity=1.433  Sum_probs=502.5

Q ss_pred             CCCCCCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccC
Q 009093            1 MESEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILG   80 (544)
Q Consensus         1 ~~~~~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~g   80 (544)
                      ||+.|+.++||++++++||||||||+||+|+|||+|||||||||||||||||||||||||+|||||||||||||||||+|
T Consensus         1 ~~~~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~g   80 (1079)
T PLN02638          1 MESEGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILG   80 (1079)
T ss_pred             CCCCCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCccCCCccchhhhhhhHHHHhhhhhccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCcccc
Q 009093           81 DREEDGDADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHL  160 (544)
Q Consensus        81 d~e~e~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (544)
                      |||||+|+||+||||+|..+++...++++|+|++|+|+||++.+.++..++.+.+++++|+|++||.++||+++++++|+
T Consensus        81 Deeed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  160 (1079)
T PLN02638         81 DEEEDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERL  160 (1079)
T ss_pred             cccccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccc
Confidence            95555558999999999654555567889999999999999988776667765445678999999988999997776666


Q ss_pred             ccCCCCCCCCCcccccCCCCCCCCccccCCCCCCCCCCCCcccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCC
Q 009093          161 SMASPGVGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDAS  239 (544)
Q Consensus       161 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~yg~g~~~wk~r~~~wk~~q~~~~~~~~~~~~~~~~~~~-~~~~~  239 (544)
                      .++++.+ .||||||+|+.+.+.++|.|||+||+++|||||++||||||+||+||+|++.++.+....++++|+ ++++.
T Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~  239 (1079)
T PLN02638        161 SMASPGA-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDAS  239 (1079)
T ss_pred             cccCccc-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCc
Confidence            6655543 689999999766778899999999999999999999999999999999887776665444565543 33322


Q ss_pred             cccccCccccccccCCCCeeeecCCCCCCchhHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 009093          240 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ  319 (544)
Q Consensus       240 ~~~~~~~~~~~~~~~~pL~~~~~~~~~~~~~yRllivl~lv~l~~Yl~WRit~p~~da~~lWl~l~iaEl~f~~~wlL~q  319 (544)
                      ++.+++|+++++++++||+||+++++++|+|||++++++|++|++||+||+++++.+++|+|+++|+||+||+|+|+|+|
T Consensus       240 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q  319 (1079)
T PLN02638        240 TDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQ  319 (1079)
T ss_pred             cccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            22345789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceecccchhhhhhhhhhhccCCCCCCccccEEeccCCCCCCChHhHHHHHHHhhcCCCCCCCceEEEcCCCcchhhH
Q 009093          320 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF  399 (544)
Q Consensus       320 ~~kw~Pv~R~t~~drL~~r~e~~~~~s~LP~VDVFI~TyDP~nEPp~vv~nTVLSaLA~DYP~dKlsVYVsDDGgs~ltf  399 (544)
                      ++||+||+|.||++||++||++++++++||+|||||||+||.+|||++|+|||||+||+|||++||+|||||||||+|||
T Consensus       320 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf  399 (1079)
T PLN02638        320 FPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF  399 (1079)
T ss_pred             cccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence            99999999999999999999887778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHcCCCcCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccc
Q 009093          400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV  479 (544)
Q Consensus       400 ~al~Eaa~FAr~WvPFCkk~~IepRaPe~YFs~~~~~~~~~~~~~f~~e~~~~KreYee~k~RI~~l~~~~~kvp~~~~~  479 (544)
                      |||.|||+||++||||||||+|||||||+||+++.++++++++|+|++||++|||||||||+|||+++++++++|+++|.
T Consensus       400 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~  479 (1079)
T PLN02638        400 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWI  479 (1079)
T ss_pred             HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccceeeeecCCCCCCCCCCCCCceeeecccCCCCCCcccccchhhhhccC
Q 009093          480 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVSS  544 (544)
Q Consensus       480 m~dg~~W~~~~~~dHp~iiqV~l~~~~~~d~~g~~lP~LVYvSREKRP~~~Hh~KAGAmNaL~R~  544 (544)
                      |+||++|||++++|||+||||+++++++.|.+|++||+||||||||||||+|||||||||||||+
T Consensus       480 m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRV  544 (1079)
T PLN02638        480 MQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRV  544 (1079)
T ss_pred             ccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999996

>PLN02400 cellulose synthase Back     alignment and domain information
>PLN02436 cellulose synthase A Back     alignment and domain information
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit Back     alignment and domain information
>PLN02189 cellulose synthase Back     alignment and domain information
>PLN02195 cellulose synthase A Back     alignment and domain information
>PLN02248 cellulose synthase-like protein Back     alignment and domain information
>PLN02190 cellulose synthase-like protein Back     alignment and domain information
>PLN02893 Cellulose synthase-like protein Back     alignment and domain information
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals Back     alignment and domain information
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A Back     alignment and domain information
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) Back     alignment and domain information
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>PRK05454 glucosyltransferase MdoH; Provisional Back     alignment and domain information
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin Back     alignment and domain information
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>PRK14716 bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis Back     alignment and domain information
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional Back     alignment and domain information
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily Back     alignment and domain information
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function Back     alignment and domain information
>PRK10018 putative glycosyl transferase; Provisional Back     alignment and domain information
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase Back     alignment and domain information
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis Back     alignment and domain information
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine Back     alignment and domain information
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine Back     alignment and domain information
>PRK10073 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily Back     alignment and domain information
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase Back     alignment and domain information
>KOG2068 consensus MOT2 transcription factor [Transcription] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PRK10063 putative glycosyl transferase; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold Back     alignment and domain information
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 Back     alignment and domain information
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
1weo_A93 Solution Structure Of Ring-Finger In The Catalytic 9e-25
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit (Irx3) Of Cellulose Synthase Length = 93 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 61/76 (80%)
Query: 3  SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
          S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2  SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61
Query: 63 PQCKTRYKKHKGSPAI 78
          PQCKTRYK+ +GSP +
Sbjct: 62 PQCKTRYKRLRGSPRV 77

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query544
1weo_A93 Cellulose synthase, catalytic subunit (IRX3); stru 1e-41
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 3e-08
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 6e-04
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Length = 93 Back     alignment and structure
 Score =  144 bits (363), Expect = 1e-41
 Identities = 51/91 (56%), Positives = 68/91 (74%)

Query: 3  SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
          S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2  SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61

Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGAS 93
          PQCKTRYK+ +GSP + GD +E+      +S
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEEDIDSGPSS 92
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
1weo_A93 Cellulose synthase, catalytic subunit (IRX3); stru 100.0
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 99.51
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 97.17
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 96.46
3bcv_A240 Putative glycosyltransferase protein; protein stru 96.11
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 96.03
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 95.81
1qg8_A255 Protein (spore coat polysaccharide biosynthesis P 95.8
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 95.17
3ckj_A329 Putative uncharacterized protein; mycobacteria, un 94.0
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 92.67
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 92.63
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 91.62
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 91.56
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 91.43
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 91.38
2ect_A78 Ring finger protein 126; metal binding protein, st 91.38
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 91.36
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 91.15
2z86_A625 Chondroitin synthase; GT-A, glycosyltransferase A, 91.13
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 91.05
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 90.96
2ecm_A55 Ring finger and CHY zinc finger domain- containing 90.51
2ysl_A73 Tripartite motif-containing protein 31; ring-type 90.3
3f1y_A 387 Mannosyl-3-phosphoglycerate synthase; GT-A type gl 89.88
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 89.56
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 89.13
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 88.64
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 88.49
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 88.43
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 87.91
2ecw_A85 Tripartite motif-containing protein 30; metal bind 87.54
3l7i_A 729 Teichoic acid biosynthesis protein F; GT-B fold, m 87.1
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 86.75
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 86.7
2f42_A179 STIP1 homology and U-box containing protein 1; cha 86.66
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 85.58
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 85.5
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 85.02
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 83.42
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 82.73
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 82.71
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 81.99
1fo8_A 343 Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl 81.97
1z6u_A150 NP95-like ring finger protein isoform B; structura 81.91
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 81.5
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 81.28
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 81.22
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 81.12
2ysj_A63 Tripartite motif-containing protein 31; ring-type 80.65
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 80.62
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 80.35
2zet_C153 Melanophilin; complex, GTP-binding protein, GTPase 80.11
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Back     alignment and structure
Probab=100.00  E-value=6.5e-48  Score=327.66  Aligned_cols=90  Identities=60%  Similarity=1.279  Sum_probs=85.4

Q ss_pred             CCCCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCC
Q 009093            3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR   82 (544)
Q Consensus         3 ~~~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~   82 (544)
                      |.|.+++|||+++++||||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| 
T Consensus         2 ~~g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD-   80 (93)
T 1weo_A            2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD-   80 (93)
T ss_dssp             CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred             CCCCCCCCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccc-
Confidence            4577789999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcCCCCCCCCC
Q 009093           83 EEDGDADDGAS   93 (544)
Q Consensus        83 e~e~~~dd~~~   93 (544)
                      |+|+++||+++
T Consensus        81 e~e~d~dD~~~   91 (93)
T 1weo_A           81 EDEEDIDSGPS   91 (93)
T ss_dssp             CCCCCSCCCCS
T ss_pred             ccccccccccc
Confidence            67788899864
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Back     alignment and structure
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Back     alignment and structure
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 544
d1weoa_93 g.44.1.1 (A:) Cellulose synthase A catalytic subun 7e-49
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 2e-05
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 0.001
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 0.002
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  161 bits (410), Expect = 7e-49
 Identities = 54/92 (58%), Positives = 70/92 (76%), Gaps = 1/92 (1%)

Query: 3  SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSC 62
          S G +G K +KN+ GQ C+ICGD +G TV+G+ FVAC+ C FP CRPCYEYER++G Q+C
Sbjct: 2  SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNC 61

Query: 63 PQCKTRYKKHKGSPAILGDREEDGDADDGASD 94
          PQCKTRYK+ +GSP + GD +E+ D D G S 
Sbjct: 62 PQCKTRYKRLRGSPRVEGDEDEE-DIDSGPSS 92
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query544
d1weoa_93 Cellulose synthase A catalytic subunit 7, IRX3 {Th 100.0
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 96.89
d1xhba2 328 Polypeptide N-acetylgalactosaminyltransferase 1, N 96.75
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 96.41
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 95.82
d1qg8a_255 Spore coat polysaccharide biosynthesis protein Sps 95.47
d1omza_265 Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga 91.95
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 91.29
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 87.55
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 85.94
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 84.63
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 83.0
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 82.71
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 82.08
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.4e-48  Score=325.83  Aligned_cols=87  Identities=60%  Similarity=1.288  Sum_probs=83.6

Q ss_pred             CCCCCCCccccccCCCcccccCCCcccCCCCCceeecCCCCCCcchhhHHHHHhcCCCCCCCCcccccccCCCCcccCCC
Q 009093            3 SEGETGVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDR   82 (544)
Q Consensus         3 ~~~~~~~k~~~~~~gqiCqICGD~VGlt~~Ge~FVAC~EC~FPVCRpCYeyErkeG~q~CPqCKTrYKR~kgsprV~gd~   82 (544)
                      |+|+.++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| 
T Consensus         2 ~~g~~g~kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~kgsprv~gD-   80 (93)
T d1weoa_           2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD-   80 (93)
T ss_dssp             CCSSSSSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-
T ss_pred             CCCCCCCCChhhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhcCCCCCCCC-
Confidence            6799999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcCCCCCC
Q 009093           83 EEDGDADD   90 (544)
Q Consensus        83 e~e~~~dd   90 (544)
                      ++||++||
T Consensus        81 e~e~~~d~   88 (93)
T d1weoa_          81 EDEEDIDS   88 (93)
T ss_dssp             CCCCCSCC
T ss_pred             cccccccc
Confidence            66677776
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure