Citrus Sinensis ID: 009096
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIN1 | 691 | Inactive TPR repeat-conta | yes | no | 0.928 | 0.729 | 0.614 | 0.0 | |
| Q84JR9 | 682 | TPR repeat-containing thi | no | no | 0.922 | 0.734 | 0.603 | 1e-179 | |
| Q9MAH1 | 699 | TPR repeat-containing thi | no | no | 0.920 | 0.715 | 0.551 | 1e-163 | |
| F4IXE4 | 730 | TPR repeat-containing thi | no | no | 0.918 | 0.683 | 0.504 | 1e-141 | |
| Q99615 | 494 | DnaJ homolog subfamily C | yes | no | 0.622 | 0.684 | 0.315 | 7e-28 | |
| Q9QYI3 | 494 | DnaJ homolog subfamily C | yes | no | 0.622 | 0.684 | 0.315 | 2e-27 | |
| Q54IP0 | 539 | DnaJ homolog subfamily C | yes | no | 0.659 | 0.664 | 0.266 | 2e-26 | |
| Q5R8D8 | 494 | DnaJ homolog subfamily C | yes | no | 0.622 | 0.684 | 0.309 | 3e-26 | |
| Q9HGM9 | 476 | DnaJ homolog subfamily C | yes | no | 0.620 | 0.707 | 0.263 | 2e-20 | |
| Q80ZX8 | 901 | Sperm-associated antigen | no | no | 0.454 | 0.274 | 0.268 | 4e-14 |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/514 (61%), Positives = 392/514 (76%), Gaps = 10/514 (1%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYR 60
M R S+RT+TL TGTGNYGHG++VRS + V+ + + EE+KR GN+MYR
Sbjct: 174 MASRTSSRTETLCTGTGNYGHGNVVRS-GGGGGTSGKAVRVAENGENPEELKRMGNDMYR 232
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
+G+F EAL LYD+AI +SP NAAYRSNRAA LTAL RL EAV +C EAVR+DP Y+RAHQ
Sbjct: 233 RGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQ 292
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR H+CF G PD +L +LQ+ EKHL RC E+RKIGDWKT ++ET
Sbjct: 293 RLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKET 352
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-HYSPPSQVKFL------ 233
DAAIA G DSSPQLVACKAEA L+L Q ED+D C+S +P+ + HY QVK
Sbjct: 353 DAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEA 412
Query: 234 -VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
V ++ +++ RFENAV AE+A +LD +N E+ SVL NVKMVVRARTRGN LFSS
Sbjct: 413 YVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSG 472
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
R+SEAC AYG+GLK D NS+LYCNRA CW K+GLWE S+EDCN AL+ QP+Y KALLRR
Sbjct: 473 RFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRR 532
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AV+DYE LRRELPGD+EVAESL A+ L +R + ++ + EVE
Sbjct: 533 AASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVL-MNRSQESKSLGFNNEVEA 591
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK +++ PGVS+ HFK +S+ +CEEISPF+N LC+RYP VHFF VDVEES+A+A
Sbjct: 592 VSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFMVDVEESMALA 651
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E +R VPTFK+YKNG+K+KEM+ PSHQFLEDS
Sbjct: 652 KAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDS 685
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 628 bits (1619), Expect = e-179, Method: Compositional matrix adjust.
Identities = 310/514 (60%), Positives = 386/514 (75%), Gaps = 13/514 (2%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYR 60
M R S R +TL TGT NYGHG+I+R+ ++ K + D+EEVK+AGN MYR
Sbjct: 168 MATRASVRPETLCTGTANYGHGNIIRTG----GKVSHATKAAAEMSDSEEVKKAGNVMYR 223
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
KGN+ EAL LYD+AIS+SPEN AYRSNRAA L A GRL EAV +C EAVR DP Y RAHQ
Sbjct: 224 KGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQ 283
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR HLC G PD +L +LQ+ EKHL C E+RKIGDW+TV+ E
Sbjct: 284 RLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEKHLRLCTEARKIGDWRTVISEI 343
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPPSQVKFL----- 233
DAAIA G DSSPQLVACKAEA L+LHQ +D+D C+S++P+ +H+ PP ++ +
Sbjct: 344 DAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLDHHHTQPPEKLFGIVCDAY 403
Query: 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSSR 292
V ++ +++ RFENA+ E+A +D+SN E+ SVL NVK V +ARTRGN LFSS
Sbjct: 404 VLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSVLNNVKNVAKARTRGNELFSSG 463
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
RYSEA AYG+GLK D++NS+LYCNRA CW K+G+WE S++DCN ALRIQP+YTKALLRR
Sbjct: 464 RYSEASVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRR 523
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AVRDYE LR+ELPGD+EVAESL A+ AL ++ E + + EVEE
Sbjct: 524 AASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNAL-SNKSEEPKYLGFNNEVEE 582
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK A S PG+S+ HFK +S+ + E ISPFVN LC+RYP VHFFKVDVEESLA+A
Sbjct: 583 VSTLDKFKTATSLPGISVFHFKSSSNRQSEAISPFVNTLCLRYPLVHFFKVDVEESLALA 642
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E ++ +PTFKIYK GEK+KEM+ PSHQ LEDS
Sbjct: 643 KAESIKKIPTFKIYKKGEKVKEMVCPSHQLLEDS 676
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1479), Expect = e-163, Method: Compositional matrix adjust.
Identities = 295/535 (55%), Positives = 362/535 (67%), Gaps = 35/535 (6%)
Query: 7 NRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAV-------------------- 46
+R+D LG+GTG YGHGSI+R + N SN V
Sbjct: 159 SRSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGGGSNSPVNVGSSSRSSSTVATGETPIW 218
Query: 47 -------DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLT 99
D+EEVKR GNEMYRKG F EALKLYD+AI++SP NAAYRSNRAA L L R+
Sbjct: 219 KKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAALIGLSRIG 278
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEK 159
EAV +CE+AVR DP Y RAH RLA L RLGQV +AR HLCF G DP EL KL++ EK
Sbjct: 279 EAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEK 338
Query: 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219
HL +C ++R++ DWKTVL E DAAI G D SPQL CK EA LKLH+ +DA S L +P
Sbjct: 339 HLIKCVDARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQSKLLEVP 398
Query: 220 KFEHYSPP-SQVKF-------LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271
K E + SQ +F ++ +K ++ RFENAV +AEKA +D E+A +
Sbjct: 399 KVEPFPVSCSQTRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQIDPRCNEVAML 458
Query: 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331
V +V RAR RGN+L+ S RY+EA SAY EGL+ D N+ILYCNRA CW K+G+WE S
Sbjct: 459 HNTVTLVARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACWFKLGMWERS 518
Query: 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391
IEDCN ALR QP+YTK LLRRA SN K+ RW AV DYEAL RELP D EVAESL +AQV
Sbjct: 519 IEDCNQALRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEVAESLFHAQV 578
Query: 392 ALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLL 451
ALKKSRGE V NM+ GEVEEI SLE+FK+A++ PGVS++HF AS +C++ISPFV+ L
Sbjct: 579 ALKKSRGEEVLNMEFGGEVEEIYSLEQFKSAMNLPGVSVIHFSTASDHQCKQISPFVDSL 638
Query: 452 CVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
C RYP +HF KVD+++ +I +E VR VPT KIYKNG ++KE++ PS + LE S
Sbjct: 639 CTRYPSIHFLKVDIDKCPSIGNAENVRVVPTVKIYKNGSRVKEIVCPSKEVLEYS 693
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Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana GN=TTL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 268/531 (50%), Positives = 348/531 (65%), Gaps = 32/531 (6%)
Query: 8 RTDTLGTGTGNYGHGSIVR---------------------SCSSNINNNNNNVKTSNVAV 46
R+ LG G +YG+GSI+R + S+N + + +A+
Sbjct: 194 RSMVLGPGAKSYGYGSIIRGNNLSPVKPTMMSDSSSVLPLTLSNNSTGGPDAYTSWKIAI 253
Query: 47 ---DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS 103
+ EEVKR GNEM+RKG F EALKLYD+AI +SP NA Y SNRAA L++LG++ EAV+
Sbjct: 254 YGSNPEEVKRFGNEMFRKGCFAEALKLYDRAIELSPSNATYHSNRAAALSSLGQIGEAVN 313
Query: 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNR 163
+CE A++LDP + RAH RLASL RLG V+NA HL DP + LQ +KHLN+
Sbjct: 314 ECEIAIKLDPNFARAHHRLASLLLRLGYVDNAGIHLYSVEEPLDPTVVKMLQQVDKHLNK 373
Query: 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223
C +R+ G+W VL E AAIA G DSSPQL CKAEA LKL + +DA L +PK E
Sbjct: 374 CTYARRRGEWSIVLTEVSAAIASGADSSPQLAMCKAEALLKLLRLDDAQRVLECVPKVEP 433
Query: 224 YSPP-SQVKFLVWL-------LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275
+ S +F + +K ++ RFENAV +AEKA +D N E+ + NV
Sbjct: 434 FPASFSHTRFFDMIAEAYTSFVKSQMELALGRFENAVVTAEKASKIDPQNNEVEILYKNV 493
Query: 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335
+++ RAR RGN+L+ RY+EA SAY EGLKYD N+ L C RA C+ K+G+WE+SIEDC
Sbjct: 494 RLITRARDRGNDLYELERYTEARSAYAEGLKYDPSNATLLCYRADCFFKVGMWESSIEDC 553
Query: 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
N AL I P+YTK L+RA KL RW+EAV DYE LR+ELP D E+AESL +AQVALKK
Sbjct: 554 NHALLILPSYTKPRLQRAALYTKLERWAEAVSDYEILRKELPYDKEIAESLFHAQVALKK 613
Query: 396 SRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY 455
SRGE V NM+ GEVEEISSLE+ KAA++ PGVS+VHF AS +C+EIS FV+ LCVRY
Sbjct: 614 SRGEVVLNMEFGGEVEEISSLEELKAALTRPGVSVVHFFRASDPQCKEISTFVDALCVRY 673
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
P +HF KV++ + + +E VR VPTFKIYK G ++KE++ PS + LE +
Sbjct: 674 PSLHFLKVEIVKCPEVGNAERVRVVPTFKIYKLGIRMKEIVCPSKEALEKT 724
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Plays a role in the transmission of male gametophyte. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 163/365 (44%), Gaps = 27/365 (7%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P+NA+Y NRAATL LGR EA+ D +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP---DPNELLKLQSFEKHLNR 163
++VRLD + R H R + LG A C D Q F K+ N
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEF-KNANA 141
Query: 164 CAESRKIG-------DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216
E KI D++ V+ D A+ + + KAE L + +A S S
Sbjct: 142 VMEYEKIAETDFEKRDFRKVVFCMDRALEFAP-ACHRFKILKAECLAMLGRYPEAQSVAS 200
Query: 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276
++ + + + + V L L + E E AV +A + + + N K
Sbjct: 201 DILRMDSTNADA---LYVRGLCLYY---EDCIEKAVQFFVQALRMAPDHEKACIACRNAK 254
Query: 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWENSI 332
+ + GN F Y A Y E L D N+ LYCNR SK+ +++I
Sbjct: 255 ALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAI 314
Query: 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392
EDC A+++ Y KA LRRA ++ EAVRDYE + + E + L NAQ+
Sbjct: 315 EDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKEHKQLLKNAQLE 373
Query: 393 LKKSR 397
LKKS+
Sbjct: 374 LKKSK 378
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/365 (31%), Positives = 161/365 (44%), Gaps = 27/365 (7%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P NA+Y NRAATL LGR EA+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP---DPNELLKLQSFEKHLNR 163
++VRLD + R H R + LG A C D Q F K+ N
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEF-KNANA 141
Query: 164 CAESRKIG-------DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216
E KI D++ V+ D A+ + + KAE L + +A S
Sbjct: 142 VMEYEKIAEVDFEKRDFRKVVFCMDRALEFAP-ACHRFKILKAECLAMLGRYPEAQFVAS 200
Query: 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276
++ + + + + V L L + E E AV +A + + + N K
Sbjct: 201 DILRMDSTNADA---LYVRGLCLYY---EDCIEKAVQFFVQALRMAPDHEKACVACRNAK 254
Query: 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWENSI 332
+ + GN F Y A Y E L D N+ LYCNR SK+ E++I
Sbjct: 255 ALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAI 314
Query: 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392
EDC A+++ Y KA LRRA ++ EAVRDYE + + E + L NAQ+
Sbjct: 315 EDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKV-YQTEKTKEHKQLLKNAQLE 373
Query: 393 LKKSR 397
LKKS+
Sbjct: 374 LKKSK 378
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm. Mus musculus (taxid: 10090) |
| >sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 186/383 (48%), Gaps = 25/383 (6%)
Query: 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTAL---GRLTEA 101
+D EE K GN +++ +++A++ Y +AI +S AAY NRAA A+ L ++
Sbjct: 1 MDHEECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDS 60
Query: 102 VSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDP--NELLK----LQ 155
+ D +A+ L+ + + + R + Y L Q + A + G DP NELL+ +
Sbjct: 61 IKDSLKAIELERSFIKGYTRASKAYIHLAQYDQA-ASIIVRGLVFDPRNNELLQEKNQID 119
Query: 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCL 215
S ++ ++ + + + + + L + + ++ + QL KA ++L Q A + +
Sbjct: 120 SIQRTISSLTKEKALSNPSSSLNQIENVLSQS-KYNTQLQVLKARVLIELKQYPQASNLM 178
Query: 216 SNMPKFEHYSPPS-QVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274
+ + + + +P V+ L + F ++ F+N+++ DYS +A L
Sbjct: 179 TTLLQEDSRNPEYLYVRGLSLYYQNNFPLALQHFQNSLTYDP-----DYSESRVA--LKR 231
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGL----KYDSYNSILYCNRAICWSKMGLWEN 330
++ + + GN F S+ Y A ++ E L K ++ NS LY NRA +
Sbjct: 232 LRSIESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISE 291
Query: 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+I DC A+ I PNY KA +RRA K + +AVRDYE + P + E+ ++ A+
Sbjct: 292 AINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAK 351
Query: 391 VALKKS-RGEFVNNMKMSGEVEE 412
+A KKS R ++ + +S E E
Sbjct: 352 IAHKKSLRKDYYKILGVSKEAGE 374
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 162/365 (44%), Gaps = 27/365 (7%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P+NA+Y NRAATL LGR EA+ D +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP---DPNELLKLQSFEKHLNR 163
++VRLD + R R + LG A C D Q F K+ N
Sbjct: 87 QSVRLDDSFVRGRLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEF-KNANA 141
Query: 164 CAESRKIG-------DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216
E KI D++ V+ D A+ + + KAE L + +A S S
Sbjct: 142 VMEYEKIAETDFEKRDFRKVVFCMDRALEFAP-ACHRFKILKAECLAMLGRYPEAQSVAS 200
Query: 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276
++ + + + + V L L + E E AV +A + + + N K
Sbjct: 201 DILRMDSTNADA---LYVRGLCLYY---EDCIEKAVQFFVQALRMAPDHEKACIACRNAK 254
Query: 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWENSI 332
+ + GN F Y A Y E L D N+ LYCNR SK+ +++I
Sbjct: 255 ALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAI 314
Query: 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392
EDC A+++ Y KA LRRA ++ EAVRDYE + + E + L +AQ+
Sbjct: 315 EDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKEHKQLLKSAQLE 373
Query: 393 LKKSR 397
LKKS+
Sbjct: 374 LKKSK 378
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Pongo abelii (taxid: 9601) |
| >sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 168/383 (43%), Gaps = 46/383 (12%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA--AYRSNRAATLTALGRLTEAVSDC 105
AE+ K GN Y++ + EA+K Y +AI + ++A Y SNRAAT +G A+ D
Sbjct: 23 AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDA 82
Query: 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165
+++ R+ P + R+ Y L + A +L N L +LQ
Sbjct: 83 KQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLALNALDRLQ---------- 132
Query: 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH-- 223
R D+ + P + +A + + QN+ + K H
Sbjct: 133 ------------RRIDST------TQPPMSWMYLKAQVYIFQND-----MDRAQKIAHDV 169
Query: 224 -YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
P V+ LV K+M+ E A++ ++A LD ++ V+ + +
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGE--NAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTK 227
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVA 338
+GN+LF Y +A Y E L+ D N + LY NRA ++ E ++ D + A
Sbjct: 228 NQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNA 287
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398
L I +Y K L RA ++E L +W EAVRD ++ D + + L Q+ LKKS+
Sbjct: 288 LAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKR 347
Query: 399 EFVNNMKMSGEVEEISSLEKFKA 421
+ ++ K+ G +E + +E KA
Sbjct: 348 K--DHYKILGVSKEATDIEIKKA 368
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 122/317 (38%), Gaps = 70/317 (22%)
Query: 51 VKRAGNEMYRKGNFVEALKLYDKAIS-MSPENAA-------YRSNRAATLTALGRLTEAV 102
+KR GNE++R G F EA Y AI+ + P +A SNRAA G + +
Sbjct: 433 LKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCI 492
Query: 103 SDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLN 162
DC A+ L P + R A Y L Q NA
Sbjct: 493 QDCNRALELHPFSVKPLLRRAMAYETLEQYRNA--------------------------- 525
Query: 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222
D+KTVL + D I + DS+ ++ E D +P
Sbjct: 526 -------YVDYKTVL-QIDCGIQLASDSANRIARILTEL--------DGSKWRERLPPIP 569
Query: 223 HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
+ P+ VWL +AE N + S+ T+ KM +
Sbjct: 570 --AVPTSEPLRVWL----------------PAAETPDQDPCPNNCMPSI-TDEKMFQALK 610
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
GN L + Y +A S Y E LK +S +Y NRA+C+ K+G +E + DC AL+I
Sbjct: 611 EEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 670
Query: 343 PNYTKALLRRAVSNEKL 359
KA R A++ + L
Sbjct: 671 GENVKASHRLALAQKGL 687
|
Plays a role in fertilization. Binds GTP and has GTPase activity. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| 302143417 | 675 | unnamed protein product [Vitis vinifera] | 0.930 | 0.748 | 0.672 | 0.0 | |
| 225446591 | 710 | PREDICTED: TPR repeat-containing thiored | 0.931 | 0.712 | 0.659 | 0.0 | |
| 147772786 | 815 | hypothetical protein VITISV_003392 [Viti | 0.924 | 0.615 | 0.647 | 0.0 | |
| 449438143 | 739 | PREDICTED: inactive TPR repeat-containin | 0.922 | 0.677 | 0.632 | 0.0 | |
| 356546964 | 584 | PREDICTED: TPR repeat-containing thiored | 0.930 | 0.864 | 0.637 | 0.0 | |
| 297824223 | 688 | hypothetical protein ARALYDRAFT_483352 [ | 0.926 | 0.731 | 0.624 | 0.0 | |
| 356542187 | 586 | PREDICTED: TPR repeat-containing thiored | 0.930 | 0.861 | 0.633 | 0.0 | |
| 449456585 | 698 | PREDICTED: TPR repeat-containing thiored | 0.920 | 0.716 | 0.614 | 0.0 | |
| 18406005 | 691 | tetratricopetide-repeat thioredoxin-like | 0.928 | 0.729 | 0.614 | 0.0 | |
| 449528021 | 698 | PREDICTED: LOW QUALITY PROTEIN: TPR repe | 0.920 | 0.716 | 0.612 | 0.0 |
| >gi|302143417|emb|CBI21978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/513 (67%), Positives = 418/513 (81%), Gaps = 8/513 (1%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYR 60
M CR S R+D LG+GTG+YGHGSI+R + +++ + + + D EEVK+AGNE+YR
Sbjct: 158 MPCRSSGRSDVLGSGTGHYGHGSIMRG-GAKLSSPRSIADRAMGSSDPEEVKKAGNELYR 216
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
+G+F EAL LYD+AIS+SP+NAAYRSNRAA LTALG+L EAV +CEEAVRLDPGY RAHQ
Sbjct: 217 RGSFTEALSLYDRAISLSPDNAAYRSNRAAALTALGKLAEAVKECEEAVRLDPGYGRAHQ 276
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLGQVENAR HL PG PDP+EL KL S EKHLNRCA++RKIGDWK+ LRE
Sbjct: 277 RLASLYLRLGQVENARRHLFLPGQPPDPSELQKLLSLEKHLNRCADARKIGDWKSALREC 336
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------- 233
DAAIA G DSSPQL++C+AEA LKLHQ EDADSCLS++PKFEHYSP KF+
Sbjct: 337 DAAIAGGADSSPQLISCRAEALLKLHQIEDADSCLSSIPKFEHYSPSCSTKFVCMIAEAY 396
Query: 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293
V ++ ++ RFENAV++AEKAGL+DYSNVE+A +L NVK+V RAR RGN LFSS R
Sbjct: 397 VLYVRAQVEMALGRFENAVAAAEKAGLIDYSNVEVAKLLNNVKLVARARARGNELFSSGR 456
Query: 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353
+SEACSAYGEGLKYD+ NS+LYCNRA+CWSK+GLWE S+EDCN AL+IQPNYTKALLRRA
Sbjct: 457 FSEACSAYGEGLKYDTSNSVLYCNRAVCWSKLGLWEKSVEDCNHALKIQPNYTKALLRRA 516
Query: 354 VSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEEI 413
VSN KLG+W+EAV+DYE LRRELPGD EVAESL AQ AL KS E +++K GEVEE+
Sbjct: 517 VSNGKLGQWAEAVKDYEVLRRELPGDIEVAESLSQAQAALSKSWEEETHSVKFGGEVEEV 576
Query: 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK 473
S +++FKAAISSPGVS+VHFK AS+ +C ++SP ++ LCV+YP + F KVDVEES A+AK
Sbjct: 577 SGVDQFKAAISSPGVSVVHFKVASNYQCGQVSPIMDKLCVQYPSIKFLKVDVEESPAVAK 636
Query: 474 SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
+E +++VPTFKIYKNG K+ EMI PSHQ+LE S
Sbjct: 637 AESIKSVPTFKIYKNGGKVNEMICPSHQYLEYS 669
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446591|ref|XP_002276519.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/529 (65%), Positives = 421/529 (79%), Gaps = 23/529 (4%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCS--------SNINNNNN--------NVKTSNV 44
M CR S R+D LG+GTG+YGHGSI+R + +++N N VK +
Sbjct: 176 MPCRSSGRSDVLGSGTGHYGHGSIMRGGAKLSSPRSIADVNMTGNIQFAGESVMVKRAMG 235
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
+ D EEVK+AGNE+YR+G+F EAL LYD+AIS+SP+NAAYRSNRAA LTALG+L EAV +
Sbjct: 236 SSDPEEVKKAGNELYRRGSFTEALSLYDRAISLSPDNAAYRSNRAAALTALGKLAEAVKE 295
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRC 164
CEEAVRLDPGY RAHQRLASLY RLGQVENAR HL PG PDP+EL KL S EKHLNRC
Sbjct: 296 CEEAVRLDPGYGRAHQRLASLYLRLGQVENARRHLFLPGQPPDPSELQKLLSLEKHLNRC 355
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
A++RKIGDWK+ LRE DAAIA G DSSPQL++C+AEA LKLHQ EDADSCLS++PKFEHY
Sbjct: 356 ADARKIGDWKSALRECDAAIAGGADSSPQLISCRAEALLKLHQIEDADSCLSSIPKFEHY 415
Query: 225 SPPSQVKFL-------VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277
SP KF+ V ++ ++ RFENAV++AEKAGL+DYSNVE+A +L NVK+
Sbjct: 416 SPSCSTKFVCMIAEAYVLYVRAQVEMALGRFENAVAAAEKAGLIDYSNVEVAKLLNNVKL 475
Query: 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337
V RAR RGN LFSS R+SEACSAYGEGLKYD+ NS+LYCNRA+CWSK+GLWE S+EDCN
Sbjct: 476 VARARARGNELFSSGRFSEACSAYGEGLKYDTSNSVLYCNRAVCWSKLGLWEKSVEDCNH 535
Query: 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
AL+IQPNYTKALLRRAVSN KLG+W+EAV+DYE LRRELPGD EVAESL AQ AL KS
Sbjct: 536 ALKIQPNYTKALLRRAVSNGKLGQWAEAVKDYEVLRRELPGDIEVAESLSQAQAALSKSW 595
Query: 398 GEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY 457
E +++K GEVEE+S +++FKAAISSPGVS+VHFK AS+ +C ++SP ++ LCV+YP
Sbjct: 596 EEETHSVKFGGEVEEVSGVDQFKAAISSPGVSVVHFKVASNYQCGQVSPIMDKLCVQYPS 655
Query: 458 VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
+ F KVDVEES A+AK+E +++VPTFKIYKNG K+ EMI PSHQ+LE S
Sbjct: 656 IKFLKVDVEESPAVAKAESIKSVPTFKIYKNGGKVNEMICPSHQYLEYS 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772786|emb|CAN62839.1| hypothetical protein VITISV_003392 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/527 (64%), Positives = 412/527 (78%), Gaps = 25/527 (4%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCS--------SNINNNNN--------NVKTSNV 44
M CR S R+D LG+GTG+YGHGSI+R + +++N N VK +
Sbjct: 186 MPCRSSGRSDVLGSGTGHYGHGSIMRGGAKLSSPRSIADVNMTGNIQFAGESVMVKRAMG 245
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
+ D EEVK+AGNE+YR+G+F EAL LYD+AIS+SP+NAAYRSNRAA LTALG+L EAV +
Sbjct: 246 SSDPEEVKKAGNELYRRGSFTEALSLYDRAISLSPDNAAYRSNRAAALTALGKLAEAVKE 305
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRC 164
CEEAVRLDPGY RAHQRLASLY RLGQVENAR HL PG PDP+EL KL S EKHLNRC
Sbjct: 306 CEEAVRLDPGYGRAHQRLASLYLRLGQVENARRHLFLPGQPPDPSELQKLLSLEKHLNRC 365
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
A++RKIGDWK+ LRE DAAIA G DSSPQL++C+AEA LKLHQ EDADSCLS++PKFEHY
Sbjct: 366 ADARKIGDWKSALRECDAAIAGGADSSPQLISCRAEALLKLHQIEDADSCLSSIPKFEHY 425
Query: 225 SPPSQVKFL-------VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277
SP KF V ++ ++ RFENAV++AEKAGL+DYSNVE+ +L NVK+
Sbjct: 426 SPSCSTKFFGMIAEAYVLYVRAQVEMALGRFENAVAAAEKAGLIDYSNVEVXKLLNNVKL 485
Query: 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337
V RAR RGN LFSS R+SEACSAYGEGLKYD+ NS+LYCNRA+CWSK+GLWE S+EDCN
Sbjct: 486 VARARARGNELFSSGRFSEACSAYGEGLKYDTSNSVLYCNRAVCWSKLGLWEKSVEDCNH 545
Query: 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
AL+IQPNYTKALLRRAVSN KLG W+EAV+DYE LRRELPGD EVAESL AQ AL KS
Sbjct: 546 ALKIQPNYTKALLRRAVSNGKLGXWAEAVKDYEVLRRELPGDIEVAESLSQAQAALSKSW 605
Query: 398 GEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY 457
E +++K GEVEE+S +++FKAAISSPGVS+VHFK AS+ +C ++SP ++ LCV+YP
Sbjct: 606 EEETHSVKFGGEVEEVSGVDQFKAAISSPGVSVVHFKVASNYQCGQVSPIMDKLCVQYPS 665
Query: 458 VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504
+ F KVDVEES A+AK+E +++VPTFKIYKNG+ + + P H LE
Sbjct: 666 IKFLKVDVEESPAVAKAESIKSVPTFKIYKNGDHTRLL--PDHSCLE 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438143|ref|XP_004136849.1| PREDICTED: inactive TPR repeat-containing thioredoxin TTL3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/533 (63%), Positives = 407/533 (76%), Gaps = 32/533 (6%)
Query: 4 RVSNRTDTLGTGTGNYGH----------------GSIVRSCSSNINNNNNN-------VK 40
R SNRTDTLG+GTGNYGH GS N + N VK
Sbjct: 187 RTSNRTDTLGSGTGNYGHGSIIRGGGSGGGGTKLGSPGNLAEGNFGSGNLQFGSETLVVK 246
Query: 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTE 100
+ + D EEVKRA NE+YR+G+FVEAL LYD+AIS+ PENAAYRSNRAA LTALGRL E
Sbjct: 247 RAMASSDPEEVKRAANELYRRGSFVEALSLYDRAISLFPENAAYRSNRAAALTALGRLGE 306
Query: 101 AVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160
AV +CEEAVRLD GY RAHQRLA+LY R GQVE AR HL F G PD EL KL+ EK
Sbjct: 307 AVRECEEAVRLDLGYGRAHQRLAALYLRFGQVEKARSHLLFSGQ-PDQFELQKLKLLEKI 365
Query: 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220
LN+CA++RK GDWK+ L+E++AA+A G D SPQLVACKAEA LKLHQ EDA+SCLSN+PK
Sbjct: 366 LNQCADARKAGDWKSALKESEAAMAAGADFSPQLVACKAEAFLKLHQLEDAESCLSNIPK 425
Query: 221 FEHYSPPSQVKFL-------VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT 273
E + SQ KF V+ ++ M ++ RF+NAV +AE+AG +D++N+E+A++L+
Sbjct: 426 LETMASCSQTKFFGMLAEAYVFYVRAMVEMALGRFDNAVLAAERAGKIDFNNLEVANLLS 485
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333
VKMV RAR+RG +LFSS RY+EAC+AYGEGLKYDS N +LYCNRA+CW+K+GLWE S++
Sbjct: 486 TVKMVARARSRGFDLFSSGRYTEACTAYGEGLKYDSSNHVLYCNRAVCWAKIGLWEQSVQ 545
Query: 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393
DCN AL IQPNYTKALLRRA SN KL RW EAV+D E LRRELPGD+EVAESLH AQVAL
Sbjct: 546 DCNQALNIQPNYTKALLRRAASNAKLERWEEAVKDLEFLRRELPGDHEVAESLHQAQVAL 605
Query: 394 KKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCV 453
K+SRGE V++ +SGEVEE+S+L+K KAAI+S GVS+VHFK A++ C+E S FVN+LC+
Sbjct: 606 KRSRGEVVDHRTVSGEVEEVSTLDKLKAAIASTGVSVVHFKVANN-ICDETSAFVNMLCI 664
Query: 454 RYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
RYP V F KVDVEES+ +AK+EG++TVP FKIYKNGEKL EMI PSH FLEDS
Sbjct: 665 RYPSVKFIKVDVEESMTLAKAEGIKTVPAFKIYKNGEKLIEMIRPSHHFLEDS 717
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546964|ref|XP_003541889.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/518 (63%), Positives = 394/518 (76%), Gaps = 13/518 (2%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNN----NVKTSNVAVDAEEVKRAGN 56
+ R NRTD LG+GT NYG GSIVR S NI VK + D EEVKRAGN
Sbjct: 61 LPSRGPNRTDVLGSGTVNYGRGSIVRGGSGNIPVPAAAPPLTVKRAMSGSDPEEVKRAGN 120
Query: 57 EMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116
E+YR GNFVEAL +YD+A+++SP NAA RSNRAA LTALGRL EA +C EAV+L+P Y
Sbjct: 121 ELYRGGNFVEALAMYDRAVAISPGNAACRSNRAAALTALGRLAEAARECLEAVKLNPAYA 180
Query: 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTV 176
RAH+RLASLY R GQVEN+R HLC G+ D +E KL EKHLNRCA++RK GDWK V
Sbjct: 181 RAHKRLASLYLRFGQVENSRRHLCLSGNQEDQSEEQKLVLLEKHLNRCADARKFGDWKRV 240
Query: 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFL-- 233
LRE++AAIA+G D SPQ+VACK EA+LKLHQ EDADS L N+PK E P SQ KF
Sbjct: 241 LRESEAAIAVGADFSPQIVACKVEAYLKLHQLEDADSSLLNVPKLEGCPPACSQTKFFGM 300
Query: 234 -----VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288
V + ++ RFENAV++AEKA +LDY NVE+ ++ VKMV RAR+RGN L
Sbjct: 301 VGEAYVPFVCAQVEMALGRFENAVAAAEKASMLDYGNVEVGRIVNVVKMVARARSRGNEL 360
Query: 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
FSS +SEACSAYGEGLKYD+ N +LYCNRAICWSK+GLWE S++DC+ AL IQPNYTKA
Sbjct: 361 FSSGMFSEACSAYGEGLKYDNSNHVLYCNRAICWSKLGLWEQSVQDCSQALNIQPNYTKA 420
Query: 349 LLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSG 408
L RRA SN KL RWSE V+DY+AL+RELP DNEVAESL AQ+AL+KSR + V +
Sbjct: 421 LFRRAASNTKLERWSEVVKDYQALKRELPNDNEVAESLRQAQLALEKSR-QMVYGTRFGV 479
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
EVE+I SL+KFKAA++S G+S+V+FKEAS+E CEE+SPF+N LCVRYP V F KVDVEE
Sbjct: 480 EVEQICSLDKFKAALASAGISVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEEC 539
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
LAIAK+E +R+VPTFKIYKNGEK+K+MI P+HQ LEDS
Sbjct: 540 LAIAKAESIRSVPTFKIYKNGEKVKDMIRPTHQLLEDS 577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824223|ref|XP_002879994.1| hypothetical protein ARALYDRAFT_483352 [Arabidopsis lyrata subsp. lyrata] gi|297325833|gb|EFH56253.1| hypothetical protein ARALYDRAFT_483352 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/514 (62%), Positives = 398/514 (77%), Gaps = 11/514 (2%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYR 60
M R S+RT+TL TGTGNYGHG++VRS + ++ V+ + + EE+KR GN+MYR
Sbjct: 172 MASRTSSRTETLCTGTGNYGHGNVVRSGAGG--SSGKTVRAAENGENPEELKRMGNDMYR 229
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
+GNF EAL LYD+AIS+SPENAAYRSNRAA LTAL RL EAV +C EAVRLDP Y+RAHQ
Sbjct: 230 RGNFSEALSLYDRAISISPENAAYRSNRAAALTALRRLGEAVRECLEAVRLDPSYSRAHQ 289
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR H+CF G PD +L +LQ+ +KHL RC E+RKIGDWKT ++ET
Sbjct: 290 RLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLDKHLRRCWEARKIGDWKTAIKET 349
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-HYSPPSQVKFL------ 233
DAAIA G DSSPQLVACKAEA L+L+Q ED+D CLS +P+ + HY Q K
Sbjct: 350 DAAIANGADSSPQLVACKAEAFLRLNQIEDSDFCLSCIPRLDHHYHSQPQAKLFGMVVEA 409
Query: 234 -VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
V ++ +++ RFENAV AE+A +LD +N E+ASVL NVKMVVRARTRGN LFSS
Sbjct: 410 YVLCIQSQVDMALGRFENAVVKAERAAMLDQTNPEVASVLNNVKMVVRARTRGNELFSSG 469
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
R+ EA AYG+GLK+D NS+LYCNRA CW K+GLWE S+EDCN AL++QP+Y KALLRR
Sbjct: 470 RFLEASVAYGDGLKHDESNSVLYCNRAACWYKLGLWEKSVEDCNHALKMQPSYIKALLRR 529
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AV+DYE LRRELPGD+EVAESL A+ L +R + ++ + EVE
Sbjct: 530 AASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVL-MNRSQESKSLGFNNEVEV 588
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK ++S PGVS+ HFK +S+ +CEEISPF+N LC+RYP VHFFKVDVEES+A+A
Sbjct: 589 VSTLDKFKNSVSLPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFKVDVEESMALA 648
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E +R VPTFKIYKNG+K+KEM+ PSHQFLEDS
Sbjct: 649 KAESIRKVPTFKIYKNGDKVKEMVCPSHQFLEDS 682
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542187|ref|XP_003539551.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/518 (63%), Positives = 393/518 (75%), Gaps = 13/518 (2%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNI----NNNNNNVKTSNVAVDAEEVKRAGN 56
+ R SNRTD LG+GT NYG GSIVR S NI VK + D EE+KRAGN
Sbjct: 63 LPSRGSNRTDVLGSGTVNYGRGSIVRGVSGNIPVPVGALPPTVKRALSGSDPEELKRAGN 122
Query: 57 EMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116
E+YR GNF EAL LYD+A+++SP NAA RSNRAA LTALGRL EA +C EAV+LD Y
Sbjct: 123 ELYRGGNFAEALALYDRAVAISPGNAACRSNRAAALTALGRLAEAARECLEAVKLDLAYA 182
Query: 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTV 176
RAH+RLASLY R GQVEN+R HLC G D +E KL EKHLNRCA++RK+GDWK V
Sbjct: 183 RAHKRLASLYLRFGQVENSRQHLCLSGVQEDKSEEQKLVLLEKHLNRCADARKVGDWKRV 242
Query: 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFL-- 233
LRE++AAIA+G D SPQ+VACK EA+LKLHQ EDA+S LSN+PK E P SQ KF
Sbjct: 243 LRESEAAIAVGADFSPQIVACKVEAYLKLHQLEDAESSLSNVPKLEGCPPECSQTKFFGM 302
Query: 234 -----VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288
V + ++ RFENAV++AEKA +LD SNVE+ ++ VKMV RAR+RGN L
Sbjct: 303 VGEAYVPFVCAQVEMALGRFENAVAAAEKASMLDCSNVEVGRIVNVVKMVARARSRGNEL 362
Query: 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
FSS ++SEACSAYGEGLKYD+ N +LYCNRAICWSK+GLWE S++DC+ AL IQPNYTKA
Sbjct: 363 FSSDKFSEACSAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCSQALNIQPNYTKA 422
Query: 349 LLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSG 408
L RRA SN KL RW E V+DY+AL+RELP DNEVAESL AQ+AL+KSR + V K
Sbjct: 423 LFRRAASNTKLERWVEVVKDYKALKRELPNDNEVAESLRQAQLALEKSR-QMVYGTKFGV 481
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES 468
EVE+I +L+KFKAA++S GVS+V+FKEAS+E CEE+SPF+N LCVRYP V F KVDVEE
Sbjct: 482 EVEQICALDKFKAALASAGVSVVYFKEASNELCEELSPFINTLCVRYPSVKFIKVDVEEC 541
Query: 469 LAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
LAIAK+E +R+VPTFKIYKNGEK+ ++I P+HQ LEDS
Sbjct: 542 LAIAKAESIRSVPTFKIYKNGEKVNDIIRPTHQLLEDS 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456585|ref|XP_004146029.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/526 (61%), Positives = 399/526 (75%), Gaps = 26/526 (4%)
Query: 6 SNRTDTLGTGTGNYGHGSIVRSCSS-------NINN---------NNNNVKTSNVAVDAE 49
S+RTD LG+G+GNYGHGSI+R +I+N +++K + + D E
Sbjct: 168 SSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESISNACSRVGGVGGGDSLKRAKQSGDPE 227
Query: 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109
E+KRAGNE Y+KG+F EAL LYD+AI++SP NAAYRSNRAA LT LGRL EAVS+CEEAV
Sbjct: 228 ELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYRSNRAAALTGLGRLGEAVSECEEAV 287
Query: 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK 169
RLDP Y RAHQRLASL+ RLGQVENAR HLCFPG PDPNEL +LQ E+H++RC ++R+
Sbjct: 288 RLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQPDPNELQRLQVVERHISRCGDARR 347
Query: 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPS- 228
+ DWK+VL+E DAAI+ G DSSPQL + EA LKLHQ EDA+S L ++PK H S S
Sbjct: 348 VRDWKSVLKEADAAISAGADSSPQLFMSRVEALLKLHQIEDAESSLFSVPKL-HQSTNSC 406
Query: 229 -QVKFLVWL-------LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280
Q KF L + ++ RFENAV++AEKAG +D NVE+A +L NV++V R
Sbjct: 407 LQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDARNVEVAVLLNNVRLVAR 466
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340
ARTRGN+LF S RY+EACSAYGEGLK D NS+LYCNRA CW K+G+WE SIEDCN AL
Sbjct: 467 ARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGVWERSIEDCNQALL 526
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEF 400
IQP YTKALLRRA SN KL +W EAVRDYE LR LP DNEVAESL +AQVALKKSRGE
Sbjct: 527 IQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRTVLPDDNEVAESLFHAQVALKKSRGEE 586
Query: 401 VNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF 460
V+N+K GEVEE+SSL++F+AA+S PGV++VHFK AS +C++ISPFV++LC RYP ++F
Sbjct: 587 VHNLKFGGEVEEVSSLDQFRAAVSFPGVTVVHFKAASDLQCKQISPFVDILCRRYPSINF 646
Query: 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
KV++EES AIA +E VR VPTFKIYK+G ++KE+I+P+ LE S
Sbjct: 647 LKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHS 692
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406005|ref|NP_565976.1| tetratricopetide-repeat thioredoxin-like 3 [Arabidopsis thaliana] gi|75337274|sp|Q9SIN1.2|TTL3_ARATH RecName: Full=Inactive TPR repeat-containing thioredoxin TTL3; AltName: Full=Tetratricopeptide repeat thioredoxin-like 3; AltName: Full=VH1-interacting TPR-containing protein gi|13605845|gb|AAK32908.1|AF367321_1 At2g42580/F14N22.15 [Arabidopsis thaliana] gi|20198077|gb|AAD22995.2| expressed protein [Arabidopsis thaliana] gi|23506041|gb|AAN28880.1| At2g42580/F14N22.15 [Arabidopsis thaliana] gi|330255047|gb|AEC10141.1| tetratricopetide-repeat thioredoxin-like 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/514 (61%), Positives = 392/514 (76%), Gaps = 10/514 (1%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYR 60
M R S+RT+TL TGTGNYGHG++VRS + V+ + + EE+KR GN+MYR
Sbjct: 174 MASRTSSRTETLCTGTGNYGHGNVVRS-GGGGGTSGKAVRVAENGENPEELKRMGNDMYR 232
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
+G+F EAL LYD+AI +SP NAAYRSNRAA LTAL RL EAV +C EAVR+DP Y+RAHQ
Sbjct: 233 RGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQ 292
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR H+CF G PD +L +LQ+ EKHL RC E+RKIGDWKT ++ET
Sbjct: 293 RLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKET 352
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-HYSPPSQVKFL------ 233
DAAIA G DSSPQLVACKAEA L+L Q ED+D C+S +P+ + HY QVK
Sbjct: 353 DAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEA 412
Query: 234 -VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
V ++ +++ RFENAV AE+A +LD +N E+ SVL NVKMVVRARTRGN LFSS
Sbjct: 413 YVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSG 472
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
R+SEAC AYG+GLK D NS+LYCNRA CW K+GLWE S+EDCN AL+ QP+Y KALLRR
Sbjct: 473 RFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRR 532
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AV+DYE LRRELPGD+EVAESL A+ L +R + ++ + EVE
Sbjct: 533 AASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVL-MNRSQESKSLGFNNEVEA 591
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK +++ PGVS+ HFK +S+ +CEEISPF+N LC+RYP VHFF VDVEES+A+A
Sbjct: 592 VSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFMVDVEESMALA 651
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E +R VPTFK+YKNG+K+KEM+ PSHQFLEDS
Sbjct: 652 KAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDS 685
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528021|ref|XP_004171005.1| PREDICTED: LOW QUALITY PROTEIN: TPR repeat-containing thioredoxin TTL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/526 (61%), Positives = 398/526 (75%), Gaps = 26/526 (4%)
Query: 6 SNRTDTLGTGTGNYGHGSIVRSCSS-------NINN---------NNNNVKTSNVAVDAE 49
S+RTD LG+G+GNYGHGSI+R +I+N +++K + + D E
Sbjct: 168 SSRTDVLGSGSGNYGHGSIMRGLGGVKTGAVESISNACSRVGGVGGGDSLKRAKQSGDPE 227
Query: 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109
E+KRAGNE Y+KG+F EAL LYD+AI++SP NAAYRSNRAA LT LGRL EAVS+CEEAV
Sbjct: 228 ELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYRSNRAAALTGLGRLGEAVSECEEAV 287
Query: 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK 169
RLDP Y RAHQRLASL+ RLGQVENAR HLCFPG PDPNEL +LQ E+H++RC ++R+
Sbjct: 288 RLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQPDPNELQRLQVVERHISRCGDARR 347
Query: 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPS- 228
+ DWK+VL+E DAAI+ G DSSPQL + EA LKLHQ EDA+S L ++PK H S S
Sbjct: 348 VRDWKSVLKEADAAISAGADSSPQLFMSRVEALLKLHQIEDAESSLFSVPKL-HQSTNSC 406
Query: 229 -QVKFLVWL-------LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280
Q K L + ++ RFENAV++AEKAG +D NVE+A +L NV++V R
Sbjct: 407 LQTKXFGMLSEAYSHFIHAQIEMALGRFENAVTAAEKAGQIDARNVEVAVLLNNVRLVAR 466
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340
ARTRGN+LF S RY+EACSAYGEGLK D NS+LYCNRA CW K+G+WE SIEDCN AL
Sbjct: 467 ARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCNRAACWFKLGVWERSIEDCNQALL 526
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEF 400
IQP YTKALLRRA SN KL +W EAVRDYE LR LP DNEVAESL +AQVALKKSRGE
Sbjct: 527 IQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRTVLPDDNEVAESLFHAQVALKKSRGEE 586
Query: 401 VNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF 460
V+N+K GEVEE+SSL++F+AA+S PGV++VHFK AS +C++ISPFV++LC RYP ++F
Sbjct: 587 VHNLKFGGEVEEVSSLDQFRAAVSFPGVTVVHFKAASDLQCKQISPFVDILCRRYPSINF 646
Query: 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
KV++EES AIA +E VR VPTFKIYK+G ++KE+I+P+ LE S
Sbjct: 647 LKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIISPTRDMLEHS 692
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| TAIR|locus:2041559 | 691 | TTL3 "tetratricopetide-repeat | 0.928 | 0.729 | 0.607 | 1.3e-164 | |
| TAIR|locus:2076386 | 682 | TTL4 "tetratricopetide-repeat | 0.922 | 0.734 | 0.601 | 4e-161 | |
| TAIR|locus:2009590 | 699 | TTL1 "tetratricopeptide-repeat | 0.847 | 0.658 | 0.591 | 9.6e-148 | |
| TAIR|locus:2184148 | 594 | TPR13 "tetratricopeptide repea | 0.642 | 0.587 | 0.476 | 7.7e-87 | |
| TAIR|locus:2171860 | 593 | TPR14 "AT5G65160" [Arabidopsis | 0.646 | 0.591 | 0.451 | 6.4e-83 | |
| TAIR|locus:2194739 | 530 | TPR12 "AT1G78120" [Arabidopsis | 0.648 | 0.664 | 0.411 | 8.5e-65 | |
| ASPGD|ASPL0000012039 | 634 | AN4192 [Emericella nidulans (t | 0.718 | 0.615 | 0.283 | 1.3e-32 | |
| UNIPROTKB|F1N7H0 | 499 | F1N7H0 "Uncharacterized protei | 0.705 | 0.767 | 0.309 | 5.7e-32 | |
| UNIPROTKB|F1S0P4 | 494 | DNAJC7 "Uncharacterized protei | 0.703 | 0.773 | 0.304 | 3.2e-30 | |
| UNIPROTKB|Q99615 | 494 | DNAJC7 "DnaJ homolog subfamily | 0.703 | 0.773 | 0.304 | 4.3e-30 |
| TAIR|locus:2041559 TTL3 "tetratricopetide-repeat thioredoxin-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
Identities = 312/514 (60%), Positives = 385/514 (74%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIXXXXXXXXXXXXXXXXXXXXXXDAEEVKRAGNEMYR 60
M R S+RT+TL TGTGNYGHG++ + EE+KR GN+MYR
Sbjct: 174 MASRTSSRTETLCTGTGNYGHGNVVRSGGGGGTSGKAVRVAENGE-NPEELKRMGNDMYR 232
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
+G+F EAL LYD+AI +SP NAAYRSNRAA LTAL RL EAV +C EAVR+DP Y+RAHQ
Sbjct: 233 RGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQ 292
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR H+CF G PD +L +LQ+ EKHL RC E+RKIGDWKT ++ET
Sbjct: 293 RLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKET 352
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH-YSPPSQVKFL------ 233
DAAIA G DSSPQLVACKAEA L+L Q ED+D C+S +P+ +H Y QVK
Sbjct: 353 DAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEA 412
Query: 234 -VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
V ++ +++ RFENAV AE+A +LD +N E+ SVL NVKMVVRARTRGN LFSS
Sbjct: 413 YVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSG 472
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
R+SEAC AYG+GLK D NS+LYCNRA CW K+GLWE S+EDCN AL+ QP+Y KALLRR
Sbjct: 473 RFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRR 532
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AV+DYE LRRELPGD+EVAESL A+ L +R + ++ + EVE
Sbjct: 533 AASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVLM-NRSQESKSLGFNNEVEA 591
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK +++ PGVS+ HFK +S+ +CEEISPF+N LC+RYP VHFF VDVEES+A+A
Sbjct: 592 VSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFMVDVEESMALA 651
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E +R VPTFK+YKNG+K+KEM+ PSHQFLEDS
Sbjct: 652 KAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDS 685
|
|
| TAIR|locus:2076386 TTL4 "tetratricopetide-repeat thioredoxin-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 309/514 (60%), Positives = 379/514 (73%)
Query: 1 MTCRVSNRTDTLGTGTGNYGHGSIXXXXXXXXXXXXXXXXXXXXXXDAEEVKRAGNEMYR 60
M R S R +TL TGT NYGHG+I D+EEVK+AGN MYR
Sbjct: 168 MATRASVRPETLCTGTANYGHGNIIRTGGKVSHATKAAAEMS----DSEEVKKAGNVMYR 223
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
KGN+ EAL LYD+AIS+SPEN AYRSNRAA L A GRL EAV +C EAVR DP Y RAHQ
Sbjct: 224 KGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQ 283
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET 180
RLASLY RLG+ ENAR HLC G PD +L +LQ+ EKHL C E+RKIGDW+TV+ E
Sbjct: 284 RLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEKHLRLCTEARKIGDWRTVISEI 343
Query: 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPPSQVKFLV---W 235
DAAIA G DSSPQLVACKAEA L+LHQ +D+D C+S++P+ +H+ PP ++ +V +
Sbjct: 344 DAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLDHHHTQPPEKLFGIVCDAY 403
Query: 236 LLKLMFNISEL--RFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSSR 292
+L + + RFENA+ E+A +D+SN E+ SVL NVK V +ARTRGN LFSS
Sbjct: 404 VLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSVLNNVKNVAKARTRGNELFSSG 463
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
RYSEA AYG+GLK D++NS+LYCNRA CW K+G+WE S++DCN ALRIQP+YTKALLRR
Sbjct: 464 RYSEASVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRR 523
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEE 412
A S KLGRW +AVRDYE LR+ELPGD+EVAESL A+ AL ++ E + + EVEE
Sbjct: 524 AASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNALS-NKSEEPKYLGFNNEVEE 582
Query: 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA 472
+S+L+KFK A S PG+S+ HFK +S+ + E ISPFVN LC+RYP VHFFKVDVEESLA+A
Sbjct: 583 VSTLDKFKTATSLPGISVFHFKSSSNRQSEAISPFVNTLCLRYPLVHFFKVDVEESLALA 642
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
K+E ++ +PTFKIYK GEK+KEM+ PSHQ LEDS
Sbjct: 643 KAESIKKIPTFKIYKKGEKVKEMVCPSHQLLEDS 676
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| TAIR|locus:2009590 TTL1 "tetratricopeptide-repeat thioredoxin-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 277/468 (59%), Positives = 339/468 (72%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D+EEVKR GNEMYRKG F EALKLYD+AI++SP NAAYRSNRAA L L R+ EAV +CE
Sbjct: 226 DSEEVKRVGNEMYRKGLFNEALKLYDRAIALSPTNAAYRSNRAAALIGLSRIGEAVKECE 285
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
+AVR DP Y RAH RLA L RLGQV +AR HLCF G DP EL KL++ EKHL +C +
Sbjct: 286 DAVRSDPNYGRAHHRLALLLIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEKHLIKCVD 345
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP 226
+R++ DWKTVL E DAAI G D SPQL CK EA LKLH+ +DA S L +PK E +
Sbjct: 346 ARRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRLDDAQSKLLEVPKVEPFPV 405
Query: 227 P-SQVKF-------LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278
SQ +F ++ +K ++ RFENAV +AEKA +D E+A + V +V
Sbjct: 406 SCSQTRFSGMACEAYIYFVKAQIEMALGRFENAVMAAEKASQIDPRCNEVAMLHNTVTLV 465
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
RAR RGN+L+ S RY+EA SAY EGL+ D N+ILYCNRA CW K+G+WE SIEDCN A
Sbjct: 466 ARARARGNDLYKSERYTEASSAYAEGLRLDPCNAILYCNRAACWFKLGMWERSIEDCNQA 525
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398
LR QP+YTK LLRRA SN K+ RW AV DYEAL RELP D EVAESL +AQVALKKSRG
Sbjct: 526 LRYQPSYTKPLLRRAASNSKMERWGAAVSDYEALIRELPHDKEVAESLFHAQVALKKSRG 585
Query: 399 EFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYV 458
E V NM+ GEVEEI SLE+FK+A++ PGVS++HF AS +C++ISPFV+ LC RYP +
Sbjct: 586 EEVLNMEFGGEVEEIYSLEQFKSAMNLPGVSVIHFSTASDHQCKQISPFVDSLCTRYPSI 645
Query: 459 HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506
HF KVD+++ +I +E VR VPT KIYKNG ++KE++ PS + LE S
Sbjct: 646 HFLKVDIDKCPSIGNAENVRVVPTVKIYKNGSRVKEIVCPSKEVLEYS 693
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| TAIR|locus:2184148 TPR13 "tetratricopeptide repeat 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 171/359 (47%), Positives = 238/359 (66%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E +K GNE Y+ GNF EAL LY+ AIS+ P+ A+YRSN++A LTALGR+ EAV +C
Sbjct: 236 DPETLKIMGNEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECR 295
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
EA+R+DP Y+RAH RLA+LY RLG+VEN+ +H G D ++ K + + HLN+C E
Sbjct: 296 EAIRIDPHYHRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLNKCTE 355
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE---- 222
++++ DW T+++ET+ I G D++PQ+ A +AEA LK +++++AD LS P F+
Sbjct: 356 AKRLRDWNTLIKETENTITTGADAAPQVYALQAEAFLKTYRHQEADDALSRCPVFDGEMS 415
Query: 223 --HYSPPSQVKFLV-WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279
+Y FLV W +++ RF AV + ++AG LD +N E++ VL + V
Sbjct: 416 TKYYGSIGYAGFLVVWA---QVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLRRAQAVT 472
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
AR+RGN+ F + R+ EAC+AYGEGL +DS NS+L CNRA C SKMG ++ ++ED + AL
Sbjct: 473 AARSRGNDFFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAAL 532
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398
++P YTKA LRRA N KLG W AV DYE LR+E P D EV + L AQ L K RG
Sbjct: 533 AVRPGYTKARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQLVKRRG 591
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| TAIR|locus:2171860 TPR14 "AT5G65160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 162/359 (45%), Positives = 231/359 (64%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E +K GNE Y+ GNF EAL LYD AI++ P AAYRSN++A LTALGR+ +AV +C
Sbjct: 235 DPETLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTALGRILDAVFECR 294
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
EA+R++P Y+RAH RL +LY RLG+VE + +H G D ++ K ++ + HLN+C E
Sbjct: 295 EAIRIEPHYHRAHHRLGNLYLRLGEVEKSIYHFKHSGPEADREDIAKAKTVQTHLNKCTE 354
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE---- 222
++++ DW ++ ET I+ G D++PQ+ A +AEA LK H++++AD LS P F+
Sbjct: 355 AKRLRDWNGLITETTNTISSGADAAPQVYALQAEALLKTHRHQEADDALSRCPVFDIDAS 414
Query: 223 --HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280
+Y P FLV ++ +++ RF+ AV + ++AG LD +N E+ + + V
Sbjct: 415 TRYYGPVGYAGFLV--VRAQVHLASGRFDEAVEAIQRAGKLDGNNREVIMISRRAQAVTE 472
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340
AR +GN LF S R+ EAC+AYGEGL +D NS+L CNRA C SK+G ++ SIEDC AL
Sbjct: 473 ARFKGNELFKSGRFQEACAAYGEGLDHDPRNSVLLCNRAACRSKLGQFDKSIEDCTAALS 532
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399
++P Y KA LRRA N K+ +W AV DYE L++E P D +V L AQ L K G+
Sbjct: 533 VRPGYGKARLRRADCNAKIEKWELAVGDYEILKKESPEDEQVIRGLSEAQQQLMKRSGQ 591
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| TAIR|locus:2194739 TPR12 "AT1G78120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 147/357 (41%), Positives = 209/357 (58%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E +K+ GNE Y +G F +AL Y++AIS P+ Y SN++A L +LGRL EA CE
Sbjct: 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACE 217
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
EA+RL+P Y RAHQRLASL RLG+VE A H G + + + +++ K L RC E
Sbjct: 218 EALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDE 277
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK---FEH 223
+R+ +W L+ET AI+ G DSSP++ A + EA L L ++E+A S K +
Sbjct: 278 ARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTKRFDIDS 337
Query: 224 YSPPSQVKFLVWLLKL--MFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
+ + +LL + I+ RFE+AV+++ +A LD S+ E+ +V + V A
Sbjct: 338 FIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAVASA 397
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
R GN LF++ ++ A Y EGL+ D YN++L CNRA K+ L+E +IEDC +AL +
Sbjct: 398 RLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLALSL 457
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398
QP+Y KA RRA S KL +W A++DYE L E P D E +L V KK G
Sbjct: 458 QPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKKQTG 514
|
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| ASPGD|ASPL0000012039 AN4192 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 117/412 (28%), Positives = 186/412 (45%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+A+ K AGN+ ++ GN+ A++ + KAI ++P N+ YRSNRAA A +A+ D E
Sbjct: 136 EADSFKLAGNKFFKDGNYNRAIEEFTKAIELNPNNSIYRSNRAAANLAAHNYLDALEDAE 195
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARH---HLCFPGHHPDPNELLKLQSFEKHLNR 163
A LDPG N+ RL+ LG+ A + P D K+ F
Sbjct: 196 RADELDPGNNKILHRLSRTLTALGRPAEALEVLERMQPPASAADRQNAEKMLRFINQAKE 255
Query: 164 C-AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED---ADSCLSNMP 219
AE+R + + + GV AEA LK+ A NM
Sbjct: 256 TLAENRGASMAVFCIDQARQLLGPGVKEPRAWTLLTAEAQLKMATGNSFGKAQDIAINML 315
Query: 220 KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279
+ + P + L+ K + + E + A+ S + LD + E +L ++ +
Sbjct: 316 RDNNQDPDA----LLIRAKAYYGLGET--DQALKSLKMCIGLDPDHREAIKLLRMLQKLT 369
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDS----YNSILYCNRAICWSKMGLWENSIEDC 335
R + GNN F ++ Y +A Y E L D N+ + NRA + + ++ +I+DC
Sbjct: 370 RTKEEGNNAFKAKDYRKAIELYTEALSVDETNKDVNAKILQNRAQAYINLKEYDEAIKDC 429
Query: 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
ALR+ P Y KA RA ++ G W EAV DY+A+ PG+ + E + A+ LKK
Sbjct: 430 TEALRLDPTYIKAQKMRAKAHGGAGNWQEAVSDYKAVAEANPGEKGIREDIRRAEFELKK 489
Query: 396 S-RGEFVNNMKMSGEVEEISSLEKF-KAAIS-SPGVSLVHFKEASSEKCEEI 444
+ R ++ + +S + E + + K AI P + EA EK +EI
Sbjct: 490 AQRKDYYKILGVSKDATETDLKKAYRKLAIKYHPDKN--REGEAGDEKFKEI 539
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| UNIPROTKB|F1N7H0 F1N7H0 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.7e-32, P = 5.7e-32
Identities = 128/414 (30%), Positives = 189/414 (45%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P+NA+Y NRAATL LG+ EA+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
++VRLD + R H R + LG A D Q F K+ N E
Sbjct: 87 QSVRLDDTFVRGHLREGKCHLSLGNAMAACRSFQ-RALELDHKNAQAQQEF-KNANAVIE 144
Query: 167 SRKIGDW---KTVLRETD--AAIAIGVDSSPQLVACKAEAHLKLHQNED---ADSCLSNM 218
KI + K R+ + A+AI S ++ +A LH E+ S S+M
Sbjct: 145 YEKIAETDFEKRDFRKVNYNLALAISFPLSERMKKIRAVCVCNLHFVEEWPPGQSVTSSM 204
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE----IASVLTN 274
K E Y FL L L ++ + +S+A + +L + ++ L N
Sbjct: 205 TKNESYDC-----FLYLLSYLCMHL--FLWVRKLSTASSSHVLRIPPKKKKACLSECLKN 257
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWEN 330
K + + GN F Y A Y E L D N+ LYCNR SK+ ++
Sbjct: 258 AKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDD 317
Query: 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+IEDC A+++ Y KA LRRA ++ EAVRDYE + + E + L NAQ
Sbjct: 318 AIEDCTNAVKLDDTYIKAYLRRAQCYLDTEQYEEAVRDYEKVY-QTEKTKEHKQLLKNAQ 376
Query: 391 VALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEI 444
+ LKKS+ + + K+ G V++ +S ++ K A +L+H + S E+
Sbjct: 377 LELKKSKRK--DYYKILG-VDKNASEDEIKKAYRKR--ALMHHPDRHSGASAEV 425
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| UNIPROTKB|F1S0P4 DNAJC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 125/410 (30%), Positives = 185/410 (45%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P+NA+Y NRAATL LGR EA+ D +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
++VRLD + R H R + LG A D Q F K+ N E
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQ-RALELDHKNAQAQQEF-KNANAVIE 144
Query: 167 SRKIGDWKTVLRETD-AAIAIGVDSSPQLV-AC------KAEAHLKLHQNEDADSCLSNM 218
KI + T + D + +D + + AC KAE L + +A S S++
Sbjct: 145 YEKIAE--TDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278
+ + S + ++ L + E + V + A D+ IA N K +
Sbjct: 203 LRMD--STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAP--DHEKACIAC--RNAKAL 256
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWENSIED 334
+ GN F Y A Y E L D N+ LYCNR SK+ +++IED
Sbjct: 257 KAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIED 316
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
C A+++ Y KA LRRA ++ EAVRDYE + + E + L NAQ+ LK
Sbjct: 317 CTHAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVY-QTEKTKEHKQLLKNAQLELK 375
Query: 395 KSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEI 444
KS+ + + K+ G V++ +S ++ K A +L+H + S E+
Sbjct: 376 KSKRK--DYYKILG-VDKNASEDEIKKAYRKR--ALMHHPDRHSGASAEV 420
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| UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 4.3e-30, P = 4.3e-30
Identities = 125/410 (30%), Positives = 185/410 (45%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE K GN Y K ++ EA Y KAI M P+NA+Y NRAATL LGR EA+ D +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
++VRLD + R H R + LG A D Q F K+ N E
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQ-RALELDHKNAQAQQEF-KNANAVME 144
Query: 167 SRKIGDWKTVLRETD-AAIAIGVDSSPQLV-AC------KAEAHLKLHQNEDADSCLSNM 218
KI + T + D + +D + + AC KAE L + +A S S++
Sbjct: 145 YEKIAE--TDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278
+ + S + ++ L + E + V + A D+ IA N K +
Sbjct: 203 LRMD--STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAP--DHEKACIAC--RNAKAL 256
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWENSIED 334
+ GN F Y A Y E L D N+ LYCNR SK+ +++IED
Sbjct: 257 KAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIED 316
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
C A+++ Y KA LRRA ++ EAVRDYE + + E + L NAQ+ LK
Sbjct: 317 CTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVY-QTEKTKEHKQLLKNAQLELK 375
Query: 395 KSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEI 444
KS+ + + K+ G V++ +S ++ K A +L+H + S E+
Sbjct: 376 KSKRK--DYYKILG-VDKNASEDEIKKAYRKR--ALMHHPDRHSGASAEV 420
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIN1 | TTL3_ARATH | No assigned EC number | 0.6147 | 0.9281 | 0.7293 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00018728001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (679 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 543 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-19 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 2e-18 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 7e-15 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-13 | |
| PTZ00051 | 98 | PTZ00051, PTZ00051, thioredoxin; Provisional | 5e-13 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-11 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 2e-10 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-08 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 2e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-07 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 3e-07 | |
| cd02957 | 113 | cd02957, Phd_like, Phosducin (Phd)-like family; co | 6e-07 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 9e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-06 | |
| cd02987 | 175 | cd02987, Phd_like_Phd, Phosducin (Phd)-like family | 1e-06 | |
| cd02984 | 97 | cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int | 5e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-06 | |
| cd02949 | 97 | cd02949, TRX_NTR, TRX domain, novel NADPH thioredo | 2e-05 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| cd02989 | 113 | cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam | 2e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 5e-04 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 5e-04 | |
| smart01043 | 145 | smart01043, BTAD, Bacterial transcriptional activa | 7e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 0.002 | |
| PRK10996 | 139 | PRK10996, PRK10996, thioredoxin 2; Provisional | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.003 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-19
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA 108
E + GN Y+ G++ EAL+ Y+KA+ + P+NA N AA LG+ EA+ D E+A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+ LDP +A+ L Y++LG+ E A
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
|
Length = 100 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-18
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG 476
E+F+ I S +V F C+ I+P + L YP V F KVDV+E+ +A+ G
Sbjct: 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG 60
Query: 477 VRTVPTFKIYKNGEKLKEMI--NPSHQFLE 504
VR++PTF +KNG+++ ++ +P + E
Sbjct: 61 VRSIPTFLFFKNGKEVDRVVGADPKEELEE 90
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 7e-15
Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310
V A++ +D S+V S K + + +GN + ++ +++A Y + ++
Sbjct: 100 PVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP- 158
Query: 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ + Y NRA C + +G WE +ED AL + P+Y+KAL RRA + + LG++++A+ D
Sbjct: 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218
Query: 371 AL 372
A
Sbjct: 219 AS 220
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-14
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDC 105
+AE +K GN +++ G++ EA++ Y+KA+ + P+NA N A LG EA+ D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 106 EEAVRLDP 113
E+A+ LDP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D N+ Y N A + K+G +E ++ED AL + P
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE-ALR 373
+ KA ++ KLG++ EA+ YE AL
Sbjct: 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 5e-13
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V ++S +F++ +S + +V F C+ I+PF Y + F KVDV+E
Sbjct: 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS 61
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504
+A+ E + ++PTFK++KNG + ++ + + L+
Sbjct: 62 EVAEKENITSMPTFKVFKNGSVVDTLLGANDEALK 96
|
Length = 98 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A ++K GN+ YR +F +A+KLY KAI P+ Y SNRAA ALG + V D
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTA 185
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ LDP Y++A R A+ Y LG+ +A L Q+ E+ L + AES
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAES 245
Query: 168 R 168
+
Sbjct: 246 K 246
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A++++ E + +F A+ LY +AI + P NA ++RA LG TEAV+D +
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENAR 136
A+ LDP +A+ R + +L + + A+
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTAK 90
|
Length = 356 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-LWENSIEDCNVAL 339
+ GN LF Y EA AY + L+ D N+ Y N A+ + K+G +E ++ED AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 340 RIQP 343
+ P
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 59 YRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
Y+ G + EAL+ Y+KA+ + P+NA N LG+ EA+ E+A+ LDP
Sbjct: 45 YKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 30/94 (31%), Positives = 43/94 (45%)
Query: 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAV 102
D + G G+F +A + KA + PENAA R+ + + G +EA+
Sbjct: 358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAI 417
Query: 103 SDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
+D E A +LDP RA L Y R GQ + A
Sbjct: 418 ADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 66/383 (17%), Positives = 129/383 (33%), Gaps = 82/383 (21%)
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE-------------- 106
GN AL Y KAI++ P N A A L G EA +
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265
Query: 107 --------------------EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP 146
+A++ P Y A + ++LG +E A +
Sbjct: 266 LKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY-------- 317
Query: 147 DPNELLKLQSFEKHLNRCAESRKI--------GDWKTVLRETDAAIAIGVDSSPQLVACK 198
L K+ ++R++ G + A+ + P ++
Sbjct: 318 -------LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL-DPDDPAALSLL 369
Query: 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA 258
EA+L L E A L+ + + + ++ + + +S+ A++ E A
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQ------LGISKLSQGDPSEAIADLETA 423
Query: 259 GLLDY--SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316
LD ++ +L+ ++ S ++ +A +A + K N+ L+
Sbjct: 424 AQLDPELGRADLLLILSYLR--------------SGQFDKALAAAKKLEKKQPDNASLHN 469
Query: 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376
+ G + E AL I+P++ A A + + G +A++ +E +
Sbjct: 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529
Query: 377 PGDNEVAESLHNAQVALKKSRGE 399
P + +L A + L+ E
Sbjct: 530 PKNLRAILAL--AGLYLRTGNEE 550
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 53 RAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112
R G++ EAL + A++ P A L GRL EA + A+ D
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 113 PGY 115
P
Sbjct: 62 PDD 64
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 75/342 (21%), Positives = 122/342 (35%), Gaps = 37/342 (10%)
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
KG+ +A + ++KA+S+ P+ +N A G +A+ E+ + +DP RA
Sbjct: 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537
Query: 121 RLASLYFRLGQVENARHHLCFP-GHHPDPNELLKLQSFEKHLNRCAESRKIGDWK---TV 176
LA LY R G E A L +P Q E L G K +
Sbjct: 538 ALAGLYLRTGNEEEAVAWLEKAAELNP--------QEIEPALALAQYYLGKGQLKKALAI 589
Query: 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236
L E A SP+ A L A S + + S + + L
Sbjct: 590 LNEAADAAP----DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL-LADA 644
Query: 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE 296
+M N ++ A++S ++A L N E L + + + + S +
Sbjct: 645 YAVMKNYAK-----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699
Query: 297 ACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN-YTKALLRRAVS 355
+A G L+ D Y + +I+ AL+ P+ L RA+
Sbjct: 700 PKAALGFELEGDLYLRQ------------KDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747
Query: 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
G +EAV+ EA + P D + +L +A K
Sbjct: 748 --ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ ++P L Y V F KVD +E+ +A GVR PT K +KNG+K+ + +
Sbjct: 33 CKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYGVRGFPTIKFFKNGKKVSDYV 89
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 408 GEVEEISSLEKFKAAI--SSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
GEV EISS ++F + +S G +VHF E +C+ + + L +YP F K++
Sbjct: 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKIN 62
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
E++ + + ++ +PT +YKNGE + ++ +D
Sbjct: 63 AEKAFLVNYLD-IKVLPTLLVYKNGELIDNIVGFEELGGDD 102
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-07
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG-RWSEAVRDY 369
N+ N K+G ++ +IE AL + P+ +A A++ KLG + EA+ D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 370 E 370
E
Sbjct: 62 E 62
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
++ A+ EKA LD + A N + +Y EA Y + L+
Sbjct: 15 DYDEALEYYEKALELD---PDNADAYYN---------LAAAYYKLGKYEEALEDYEKALE 62
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
D N+ Y N + + K+G +E ++E AL + PN
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 80 ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG-QVENARHH 138
+NA N L LG EA+ E+A+ LDP A+ LA Y +LG E A
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 139 L 139
L
Sbjct: 61 L 61
|
Length = 69 |
| >gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 408 GEVEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
G+V E+ S E+F AI +VH E C ++ + L YP V F K+
Sbjct: 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKI- 120
Query: 465 VEESLAIAKSEGVRT--VPTFKIYKNGEKLKEMINPSHQFLED 505
+ A S+ T +P +YK GE + + + ED
Sbjct: 121 --RASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGED 161
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 175 |
| >gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-06
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 415 SLEKFKAAISSPG--VSLVHFKEASSEKCEEISP-FVNLLCVRYPYVHFFKVDVEESLAI 471
S E+F+ + S + ++HF +E C++++ F L +P V F ++ EE I
Sbjct: 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI 60
Query: 472 AKSEGVRTVPTFKIYKNGEKLKEM 495
++ + VPTF ++NG + +
Sbjct: 61 SEKFEITAVPTFVFFRNGTIVDRV 84
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (111), Expect = 7e-06
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVS 103
D E A +Y G++ EAL+LY+KA+ + PE A A L ALGR EA+
Sbjct: 129 DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188
Query: 104 DCEEAVRLDPGYN-RAHQRLASLYFRLGQVENARHHL 139
E+A++L+P + A L LY +LG+ E A +
Sbjct: 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY 225
|
Length = 291 |
| >gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTF 483
S + LV + + C + P +N + + VHF ++D++E IA++ G+ PT
Sbjct: 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTV 71
Query: 484 KIYKNGEKLKE 494
+ +K+ E +KE
Sbjct: 72 QFFKDKELVKE 82
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 415 SLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIA 472
+ F I SS LV F C+ I+P + L Y V F K++V+E+ IA
Sbjct: 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA 61
Query: 473 KSEGVRTVPTFKIYKNGEKLKEMI 496
G+R++PT ++KNG+++ +
Sbjct: 62 AKYGIRSIPTLLLFKNGKEVDRSV 85
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
F EA L D+ ++ P N + L +LG + A++ +A+ L P
Sbjct: 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232
Query: 122 LASLYFRLGQVENARHHL 139
LA++ G+ E A H
Sbjct: 233 LATILIEAGEFEEAEKHA 250
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 1e-04
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 16/209 (7%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRA-ATLTALGRLTEAVSDC 105
AE + G + G + EAL+L +KA+++ P+ + A L LG EA+
Sbjct: 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 106 EEAVRLDPGYNR---AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLN 162
E+A+ LDP N A L +L LG+ E A L +L E LN
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELL------EKALKLNPDDDAEALLN 207
Query: 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222
K+G ++ L + A+ + P L L + + L + K
Sbjct: 208 LGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKAL 263
Query: 223 HYSPPSQVKFLVWLLKLMFNISELRFENA 251
P + L L L+ + E A
Sbjct: 264 ELDP--DLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRL-------DPGYNRAHQRLASLYFRLGQ 131
P+ AA +N A L LG EA+ E+A+ L P RA LA LY LG
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 132 VENARHHL 139
+ A +L
Sbjct: 62 YDEALEYL 69
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
N + K+G ++ ++E AL + P+ A A + KLG++ EA+ DYE
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
|
Length = 100 |
| >gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 405 KMSGEVEEISSLEK--FKAAISSPGVSLVHFKEASSEKC-------EEISPFVNLLCVRY 455
K G+ E+S EK F+ SS V + HF +C E ++ ++
Sbjct: 1 KGHGKYREVSD-EKEFFEIVKSSERV-VCHFYHPEFFRCKIMDKHLEILAK-------KH 51
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489
F KV+ E++ + + ++ +PT ++KNG
Sbjct: 52 LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG 85
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 88 RAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
A G EA++ E A+ P A L R G++ A
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAA 51
|
Length = 65 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR 97
+ + A + K R GNF EA+ + KA ++P + + A L LGR
Sbjct: 94 IAYPKDRELLAAQGKNQI----RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149
Query: 98 LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
EA +A+ L P L G +E+A
Sbjct: 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188
|
Length = 257 |
| >gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 88 RAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138
A L ALGR EA++ E + LDP R H+ L +R G+ A
Sbjct: 67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRA 117
|
Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 59 YRKGNFVEALKLYDKAISM-------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
R G++ EAL+L +KA+ + PE A +N A ALG EA+ E+A+ L
Sbjct: 16 RRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALAL 75
Query: 112 DP 113
Sbjct: 76 RE 77
|
Length = 78 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491
V KVD + + GVR PT K++ NG K
Sbjct: 48 GKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSK 83
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 458 VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMIN---PSHQF 502
V F KV+ E ++ +R++PT I+KNG+ + +M+N P F
Sbjct: 85 VRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV-DMLNGAVPKAPF 131
|
Length = 139 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEA 101
+ KG AL L KA++++PE AA R + A L A GR EA
Sbjct: 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLT--ALGRLTEAVSDC-EEAVRLDPGYN 116
G +AL Y A+ ++ +N A L A ++T +A+ LDP
Sbjct: 168 ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI 227
Query: 117 RAHQRLASLYFRLGQVENAR 136
RA LA F G A
Sbjct: 228 RALSLLAFAAFEQGDYAEAA 247
|
Length = 287 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 34.9 bits (81), Expect = 0.004
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 70 LYDKAISMSPENAAYRSNRAATLTALGRLTEAV 102
LY+KA+ + P NA N A L LG+ EA+
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEAL 33
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.89 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.88 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.87 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.87 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.87 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.87 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.86 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.86 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.85 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.85 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.84 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.83 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.82 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.82 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.82 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.82 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.82 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.82 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.81 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.81 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.81 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.81 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.81 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.81 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.8 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.8 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.8 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.8 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.79 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.79 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.79 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.78 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.78 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.77 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.77 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.77 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.77 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.77 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.77 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.77 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.77 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.76 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.76 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.76 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.75 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.75 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.75 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.75 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.74 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.74 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.71 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.71 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.71 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.71 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.7 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.7 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.69 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.69 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.68 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.68 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.68 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.67 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.66 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.66 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.66 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.65 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.65 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.65 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.58 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.56 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.55 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.55 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.53 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.51 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 99.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.5 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| PHA02125 | 75 | thioredoxin-like protein | 99.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.46 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.45 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 99.45 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.45 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.45 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.43 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 99.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.41 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.4 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.4 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 99.4 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 99.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.37 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.36 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.36 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.34 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.33 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 99.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.32 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.32 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 99.31 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.31 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 99.31 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.29 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.28 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.28 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 99.28 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.28 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.28 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.25 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.24 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.24 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.23 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.22 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.21 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.21 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.21 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.2 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.2 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.18 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.17 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.17 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.15 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.12 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.11 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.09 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.06 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.06 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.06 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.04 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.04 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.03 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.01 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.0 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.95 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 98.95 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.94 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.93 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.91 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.91 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.91 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.9 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.9 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.89 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 98.87 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 98.87 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 98.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.86 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 98.86 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.85 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.85 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 98.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.85 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.84 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 98.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.82 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.82 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 98.82 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 98.79 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 98.78 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 98.77 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 98.77 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.75 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.73 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.73 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.72 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.71 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 98.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.7 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.69 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.69 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.68 | |
| smart00594 | 122 | UAS UAS domain. | 98.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.66 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.61 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 98.61 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 98.6 | |
| PLN02412 | 167 | probable glutathione peroxidase | 98.6 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.58 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.58 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.57 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 98.56 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.56 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.54 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.54 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 98.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.52 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 98.48 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 98.44 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.44 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 98.43 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 98.42 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 98.39 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 98.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.36 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.34 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.33 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.29 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.28 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 98.27 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 98.25 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 98.25 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.22 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 98.22 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.21 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.16 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.16 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.15 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 98.15 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 98.14 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.12 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 98.09 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 98.09 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.08 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 98.07 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.07 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 98.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.06 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 98.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.06 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 98.05 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 98.03 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.01 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.01 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.0 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 98.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.98 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.97 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 97.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.97 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 97.96 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.96 | |
| PRK15000 | 200 | peroxidase; Provisional | 97.95 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.94 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 97.94 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 97.94 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 97.94 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 97.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.93 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 97.92 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 97.91 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.9 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 97.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.89 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 97.88 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.87 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 97.86 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 97.86 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.86 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.85 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.82 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.81 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 97.8 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.75 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.71 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 97.7 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 97.65 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 97.63 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 97.63 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 97.63 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.61 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.59 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.57 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.56 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 97.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.55 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.51 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.49 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.48 | |
| PTZ00253 | 199 | tryparedoxin peroxidase; Provisional | 97.47 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.37 | |
| PF05768 | 81 | DUF836: Glutaredoxin-like domain (DUF836); InterPr | 97.37 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 97.37 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 97.35 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 97.34 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 97.34 | |
| PF01216 | 383 | Calsequestrin: Calsequestrin; InterPro: IPR001393 | 97.34 | |
| TIGR02189 | 99 | GlrX-like_plant Glutaredoxin-like family. This fam | 97.31 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.3 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.27 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.26 | |
| TIGR02181 | 79 | GRX_bact Glutaredoxin, GrxC family. This family of | 97.23 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.22 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 97.21 | |
| KOG3170 | 240 | consensus Conserved phosducin-like protein [Signal | 97.2 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.18 | |
| KOG3171 | 273 | consensus Conserved phosducin-like protein [Signal | 97.17 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.12 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.12 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 97.11 | |
| PHA03050 | 108 | glutaredoxin; Provisional | 97.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.06 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.03 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.01 | |
| cd03418 | 75 | GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b | 97.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.97 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.96 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.94 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.93 | |
| PF07912 | 126 | ERp29_N: ERp29, N-terminal domain; InterPro: IPR01 | 96.92 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.92 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.88 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.87 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.86 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.86 | |
| cd03019 | 178 | DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m | 96.85 | |
| cd03067 | 112 | PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin | 96.85 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 96.84 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.84 | |
| cd03027 | 73 | GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg | 96.83 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.81 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.77 | |
| cd03072 | 111 | PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second | 96.77 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.76 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.7 | |
| PRK10954 | 207 | periplasmic protein disulfide isomerase I; Provisi | 96.7 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.69 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.66 | |
| cd02981 | 97 | PDI_b_family Protein Disulfide Isomerase (PDIb) fa | 96.64 | |
| PRK10638 | 83 | glutaredoxin 3; Provisional | 96.61 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.6 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 96.58 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.56 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=322.64 Aligned_cols=339 Identities=18% Similarity=0.107 Sum_probs=307.2
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
....|...+..+++.+|....+...+|..+..+|+..+|..+|.+|++..|..+.+|.+||-++..+|+...|+..|++|
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 33457777777788888888888888888888888888888888888888888888999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
++++|+..++|++||.+|...+.+++|+.+|.+++. .|+. +..+-+++.+|+++|+.+-|+..|+++++..
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~--------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH--------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc--------hhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999887 4443 3457788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|.+ +.++.++|.++-..|+..+|..+|.+++.+.|...+...++ |.++..+|.+++|...|.++++..|+...
T Consensus 317 P~F-~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL------gni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 317 PNF-PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL------GNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred CCc-hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH------HHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 998 88999999999999999999999999999999997766655 99999999999999999999999999887
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK 347 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 347 (543)
+. .++|.+|.++|++++|+.+|++++++.|..+.++.++|..|..+|+.+.|+.+|.++|.++|...+
T Consensus 390 a~------------nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 390 AH------------NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred hh------------hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 74 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
++.+||.+|...|+..+|+..|+.++++.|+.+++..++..+...+.
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988877664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=305.63 Aligned_cols=344 Identities=19% Similarity=0.145 Sum_probs=244.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
...+++.+|.-++++-++|+.+...|++++|+..|+.+++++|+..++|.++|.++...|+.+.|..+|..+++++|+..
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++..+|+..+|..+|.+++. .+.. +..|.++|-.+...|+...|+..|+++++++|.. ..+|
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f--------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAY 255 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPCF--------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAY 255 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCce--------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHH
Confidence 8888888888888888888888877776 3322 2235555555556666666666666666666655 4555
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
+++|.+|...+.+++|+.+|.+++...|.+...+-++ |.+|+.+|..+-|+..|+++++++|..++++.-+.+-
T Consensus 256 iNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl------a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 256 INLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL------ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred hhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce------EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 5666666666666666666666666666554433333 5555555555555555555555555555554322210
Q ss_pred H----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH
Q 009096 276 K----------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 276 ~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
. .+.++.++|+++.+.|++++|..+|.++++..|+.+.++.+||.+|.++|++++|+.
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 0 011135577888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 334 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+|++++.+.|...+++.++|..|..+|+...|+++|.+|+.++|...++..+|+.+...-+.
T Consensus 410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 410 CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 88888888888888888888888888888888888888888888877777777766555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=248.24 Aligned_cols=356 Identities=18% Similarity=0.217 Sum_probs=324.6
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
.+|.+++-++.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHhcCCCC-CCChHH----HhHHH---HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGH-HPDPNE----LLKLQ---SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
|.++.++|++++|...|.++++ .++... ...+. ....+......+...|++..|+.....++++.|=+ ..+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-a~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-ASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-hHH
Confidence 9999999999999999999998 332221 12222 22234455666778899999999999999998755 778
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+..++.||...|+...|+..++.+-++..++++..+.+ +.+++..|+.+.++...+++++++|++..++..+..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki------s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI------SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH------HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 88999999999999999999999999999998876666 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
++.+.....-+......++|.++++..++.++.+|..+. .+..+..|+..-|++.+|+..+.+++.++|++.+++.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 998888888899999999999999999999999998654 4445788999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
.+|.+|+....|+.|+..|++|.+.+|+|..+...+.++.+..++..+.++|++.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 9999999999999999999999999999999999999999999999999999876
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=283.31 Aligned_cols=314 Identities=21% Similarity=0.242 Sum_probs=244.5
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999995 7889999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCCCC--ChHHHhH-HH--------------------------HHHHH------------------
Q 009096 128 RLGQVENARHHLCFPGHHP--DPNELLK-LQ--------------------------SFEKH------------------ 160 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~--~~~~~~~-~~--------------------------~~~~~------------------ 160 (543)
.+|++++|+..|..+...+ +...... +. ....+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999998776553311 1100000 00 00000
Q ss_pred ---------HHHHHh---hhhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCC
Q 009096 161 ---------LNRCAE---SRKIGDWKTVLRETDAAIAIGV--DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP 226 (543)
Q Consensus 161 ---------~~~~~~---~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 226 (543)
..++.. ....++|++|+..|++++..++ .....++..+|.++..+|++++|+..|++++..+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 000100 0123577888888888887641 22356677788888888888888888888888888775
Q ss_pred hhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009096 227 PSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306 (543)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 306 (543)
.. ++.+|.++...|++++|+..|+++++.+|+++.++ ..+|.++...|++++|+.+|+++++
T Consensus 366 ~~------~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 366 QS------YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------------YHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred HH------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 44448888888888888888888888888887765 3368888888888888888888888
Q ss_pred cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
++|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++++.|++.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888887653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=282.82 Aligned_cols=330 Identities=10% Similarity=-0.034 Sum_probs=295.7
Q ss_pred cccccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH
Q 009096 24 IVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS 103 (543)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 103 (543)
.++.+....|...+...+...|.++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 34455556688888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
.|++++.++|+++.++..++.++...|++++|+..+.+++. .+++... +... ..+...|++++|+..+++
T Consensus 132 ~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--------~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 132 LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--------IATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--------HHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 4443321 1122 236778999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHH----HHHHHHHH
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFEN----AVSSAEKA 258 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~----A~~~~~~a 258 (543)
++...|.........++.++...|++++|+..+++++...|++...... +|.++...|++++ |+..|+++
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~------Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS------LGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH------HHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9998775545556667889999999999999999999999998654444 4999999999986 89999999
Q ss_pred hhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 259 l~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
+..+|++..++. .+|.++...|++++|+..++++++++|+++.++.++|.++...|++++|+..|+++
T Consensus 277 l~l~P~~~~a~~------------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 277 LQFNSDNVRIVT------------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999987753 47999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+..+|++...+..+|.++...|++++|+..|+++++.+|++.
T Consensus 345 l~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 345 AREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999988888889999999999999999999999999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=277.62 Aligned_cols=344 Identities=12% Similarity=0.048 Sum_probs=267.0
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|+..+.+++...|. +..+.++|.++...|++++|+..++++++++|++..+++.+|.+|..+|++++|+..|..+.
T Consensus 143 ~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34588888889998885 78999999999999999999999999999999999999999999999999999998876654
Q ss_pred hcCC------------------------------CChhHHHHHHH---------------------------------HH
Q 009096 110 RLDP------------------------------GYNRAHQRLAS---------------------------------LY 126 (543)
Q Consensus 110 ~~~p------------------------------~~~~~~~~la~---------------------------------~~ 126 (543)
..++ .+...+..++. .+
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (615)
T TIGR00990 222 IIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKS 301 (615)
T ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHH
Confidence 4332 21111111111 11
Q ss_pred ---HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 127 ---FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 127 ---~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
...++|++|+..|++++.... ........+..++.++...|++++|+..++++++.+|.. ...+..+|.++.
T Consensus 302 ~e~~~~~~y~~A~~~~~~al~~~~----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~ 376 (615)
T TIGR00990 302 PESKADESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNL 376 (615)
T ss_pred HHhhhhhhHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Confidence 112578889999988886221 011223457778888888899999999999999888876 667888888888
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|++++|+..|+++++.+|+++.. ++.+|.++...|++++|+..|++++.++|++...+ ..
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~------------~~ 438 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDI------YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH------------IQ 438 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH------------HH
Confidence 9999999999999988888888654 44448888889999999999999999988887764 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHH-
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA------LLRRAVSN- 356 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~- 356 (543)
+|.++...|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++.++|++... +...+.++
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 68888888888888888888888888888888888888888888888888888888888764332 23333333
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
...|++++|+..++++++++|++..++..++.+...+++..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 34688888888888888888888887777777776665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=283.43 Aligned_cols=335 Identities=14% Similarity=0.095 Sum_probs=276.2
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh--------------hHHhHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAA--------------YRSNRAATLT 93 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~ 93 (543)
+....|+..+++++..+|.+++++..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33456888899999999999999999999999999999999999999999997643 2245688999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCCh-HHHhHHHH---------------
Q 009096 94 ALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDP-NELLKLQS--------------- 156 (543)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~-~~~~~~~~--------------- 156 (543)
..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++ .++. .....+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 3332 22211111
Q ss_pred ------------------HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 157 ------------------FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 157 ------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
...+..++..+...|++++|+..|+++++.+|++ +.+++.+|.+|...|++++|+..++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123346677788999999999999999999987 778889999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--------------------------------------
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL-------------------------------------- 260 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------------------------------------- 260 (543)
++..|.++...... +..+...+++++|+..++++..
T Consensus 522 l~~~P~~~~~~~a~------al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 522 AQQKPNDPEQVYAY------GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHcCCCCHHHHHHH------HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99999887654333 4444445555555555444321
Q ss_pred --cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 261 --LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 261 --~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
..|.++... ..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++
T Consensus 596 l~~~p~~~~~~------------~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 596 LRQQPPSTRID------------LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHhCCCCchHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 234444332 347888999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++..|+++.++..+|.++...|++++|++.|++++...|+++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999999999999999999999999999999998876553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=261.25 Aligned_cols=321 Identities=12% Similarity=0.050 Sum_probs=283.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+...+...+..+.+.|++++|+..++.++...|+++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 127 FRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
...|++++|+..|++++. .|+.. ..+..++..+...|++++|+..+.+++...|+. +..+...+ .+...
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~--------~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~ 190 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNS--------QIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNK 190 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHc
Confidence 999999999999999988 44432 346778888999999999999999999999877 45555543 48899
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
|++++|+..+++++...|...... ....+.++...|++++|+..|++++..+|++..++ ..+|
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~-----~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~------------~~Lg 253 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQES-----AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR------------RSLG 253 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhH-----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH------------HHHH
Confidence 999999999999998876443221 12337788999999999999999999999998775 3479
Q ss_pred HHHHhcCCHHH----HHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 286 NNLFSSRRYSE----ACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 286 ~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.++...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|+
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999986 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+++|+..|+++++.+|++......++.+....+
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 999999999999999998776555544444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-30 Score=231.75 Aligned_cols=333 Identities=21% Similarity=0.227 Sum_probs=282.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
.+..+..+|+-++..|+|++||.+|++||++.|+.+..|.+++.||...|+|++.++...++++++|++..++++++..+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCC------------------------------CC------CCChHHH-------------------
Q 009096 127 FRLGQVENARHHLCFP------------------------------GH------HPDPNEL------------------- 151 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a------------------------------~~------~~~~~~~------------------- 151 (543)
..+|++.+|+....-. ++ -|.+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 9999999987643100 00 0000000
Q ss_pred --------hH---------------------------------------HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 152 --------LK---------------------------------------LQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 152 --------~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
.. -..+.++...|..++-.|++..|...++.+|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 0012334445666677899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 185 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
.++|.. ...|..++.+|...++.++-...|.++..++|.+++. ++.+|++++-++++++|+..|++++.++|+
T Consensus 354 ~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv------YyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 354 KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV------YYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch------hHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 999887 4558889999999999999999999999999999874 455599999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+...+ .+++.+.+++++++++...|+.+++..|+.++++...|.++..+++++.|++.|.+++.+.|.
T Consensus 427 ~~~~~------------iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 427 NAYAY------------IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88765 457889999999999999999999999999999999999999999999999999999999998
Q ss_pred ------CHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 345 ------YTKALLRRAVSNE-KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 345 ------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++..+.+.|.+.. -.+++..|+..+++|++++|....+...++....+..+..+
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 6666666666543 35899999999999999999999999998888777765543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=275.17 Aligned_cols=355 Identities=11% Similarity=0.050 Sum_probs=288.2
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-----------------------------
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP----------------------------- 79 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----------------------------- 79 (543)
....|+..+++.+..+|.++..++.+|..++..|++++|+..+++++...+
T Consensus 162 ~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~ 241 (1157)
T PRK11447 162 QRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKY 241 (1157)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence 344588888889999999999999999999999999999999999865432
Q ss_pred -----cchh--------------------hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 80 -----ENAA--------------------YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 80 -----~~~~--------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
++.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++
T Consensus 242 l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 242 LQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred HHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 1110 001347888999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CCChHH---HhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 009096 135 ARHHLCFPGH-HPDPNE---LLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ 207 (543)
Q Consensus 135 A~~~~~~a~~-~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~ 207 (543)
|+..|+++++ .++... +..+ .........+..+...|++++|+..|+++++.+|++ ..++..+|.++...|+
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD-SYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCC
Confidence 9999999987 333221 1111 122234556888899999999999999999999987 6788889999999999
Q ss_pred hhHHHHHhhcCCCCCCCCChhHHHHHH------------------------------------HHHHHHHHHhhcChHHH
Q 009096 208 NEDADSCLSNMPKFEHYSPPSQVKFLV------------------------------------WLLKLMFNISELRFENA 251 (543)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~a~~~~~~g~~~~A 251 (543)
+++|+..|+++++.+|++......+.. +..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998655433211 22346777889999999
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--------------------
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------------------- 311 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------------------- 311 (543)
+..|+++++.+|+++.++. .+|.++...|++++|+..|+++++.+|++
T Consensus 481 ~~~~~~Al~~~P~~~~~~~------------~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 481 AELQRQRLALDPGSVWLTY------------RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999987653 35666666666766666666666655544
Q ss_pred ------------------------------------------------------hhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 312 ------------------------------------------------------SILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 312 ------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+..+..+|.++.+.|++++|+..|++
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556678888889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
+++.+|+++.+++.++.++...|++++|++.++++++..|+++.+...++.+...+++.
T Consensus 629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999998888777766654443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=272.70 Aligned_cols=347 Identities=20% Similarity=0.185 Sum_probs=284.3
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+.......|.++..+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 529 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID 529 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444445556677788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
|.+..++..++.++...|++++|+..+++++. .+.. ...++.++..+...|++++|+..+++++...|..
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 600 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE--------IEPALALAQYYLGKGQLKKALAILNEAADAAPDS- 600 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-
Confidence 88888888888888888888888888888765 2221 2335667777888888888888888888887765
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+..+..+|.++...|++++|+..|+++++..|.++..+. .+|.++...|++++|+..|++++..+|++...+..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL------LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 677888888888888888888888888888887755433 33888888888888888888888888887766554
Q ss_pred HHhHH----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 272 LTNVK----------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 272 l~~~~----------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
+..+. ....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|+++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHH
Confidence 43321 11224557889999999999999999999999887 77888999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 330 NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 330 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++..|+++.+...+..+....++
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999888887776655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=273.69 Aligned_cols=342 Identities=14% Similarity=0.054 Sum_probs=206.6
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+++.+...|.+...+..++..+...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 44444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hH-------------------------HHHHHHHHHHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LK-------------------------LQSFEKHLNRCA 165 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~-------------------------~~~~~~~~~~~~ 165 (543)
|.++.+|..+|.++...|++++|+..|+++++ .++.... .. +.....+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 55555555555555555555555555555443 1111100 00 000112333444
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.+...|++++|+..++.+....|.. +..+..+|.++...|++++|+..|++++...|++ . .+...+.++...
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~l~~~~~~~ 749 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKA-ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q------NAIKLHRALLAS 749 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h------HHHHHHHHHHHC
Confidence 4444455555555555544444433 3444555556666666666666666665555554 1 122235556666
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+..+++++..+|++..++ ..+|.++...|++++|+..|+++++.+|+++.++.++|.++...
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLR------------TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 666666666666666666655443 34677888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
|+ .+|+..+++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.+...+..+....++
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 88 7788888888888888888888888888888888888888888888888888887777766555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=223.95 Aligned_cols=344 Identities=23% Similarity=0.335 Sum_probs=269.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.....|+..+..|+|+.|+.+|..++.++|.|...+.++..+|..+|+|++|++.-.+.++++|+.+..|.++|..+.-+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 45567778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHhcCCCC-CCChHHH-hHH-----------------------------------------------------
Q 009096 130 GQVENARHHLCFPGH-HPDPNEL-LKL----------------------------------------------------- 154 (543)
Q Consensus 130 g~~~~A~~~~~~a~~-~~~~~~~-~~~----------------------------------------------------- 154 (543)
|+|++|+..|.+.++ .++.... ..+
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 888888888877776 3332211 000
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHhhhhcCCHHHH
Q 009096 155 ----------------------------------------------------------QSFEKHLNRCAESRKIGDWKTV 176 (543)
Q Consensus 155 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~A 176 (543)
........+|...++..++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111223355666777888889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH-HHHHHHHHHHHhhcChHHHHHHH
Q 009096 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF-LVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 177 ~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
++.|..++.++ .. ...+.+.+-+|+..|.+.+++.....+++.....-.....+ ..+...|..+...++++.|+.+|
T Consensus 244 ~q~y~~a~el~-~~-it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA-TD-ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh-hh-hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 99999999987 43 56677789999999999988888877665544331111111 22333477889999999999999
Q ss_pred HHHhhcCCCcHHHHHHHH---------------hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 256 EKAGLLDYSNVEIASVLT---------------NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 256 ~~al~~~p~~~~~~~~l~---------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
.+++..... ++...-+. +...+......|+.++..|+|..|+..|.++|..+|+++.+|.|+|.
T Consensus 322 ~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA 400 (539)
T ss_pred HHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 999865544 22211111 12234445678999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
||.++|.+..|+..++.+++++|++..+|++.|.++..+.+|++|.+.|+++++.+|++.++...+.++...+...
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~ 476 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGD 476 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=222.54 Aligned_cols=339 Identities=30% Similarity=0.391 Sum_probs=297.6
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (543)
........+.....++.....|..++...+|.+|+..|..|++..|+++..|.+++.++...++|++|+-..++.++++|
T Consensus 35 ~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd 114 (486)
T KOG0550|consen 35 TSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD 114 (486)
T ss_pred cCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence 33333444445567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CCC
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DSS 191 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~ 191 (543)
..+..+...+.|+..+++..+|...|+.. .. +....++..+++.+.... +..
T Consensus 115 ~~~k~~~r~~~c~~a~~~~i~A~~~~~~~------~~--------------------~~~anal~~~~~~~~s~s~~pac 168 (486)
T KOG0550|consen 115 GFSKGQLREGQCHLALSDLIEAEEKLKSK------QA--------------------YKAANALPTLEKLAPSHSREPAC 168 (486)
T ss_pred CccccccchhhhhhhhHHHHHHHHHhhhh------hh--------------------hHHhhhhhhhhcccccccCCchh
Confidence 99999999999999999999998877511 00 011223333333333322 112
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+....+.|+...|++++|...--.++++++.+.+ +++.+|.+++..++.+.|+..|++++.++|++......
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~------al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE------ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH------HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 455667899999999999999999999999999844 56666999999999999999999999999999999998
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK 347 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 347 (543)
...++....+...|+-.++.|+|.+|.++|..+|.++|++ +..|.++|.+..++|+..+|+..++.++.++|....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 8889999999999999999999999999999999999987 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
++...|.|+..+++|++|+++|++|+++..+ .+....+..+...|++.+++++|++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykil 379 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKIL 379 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHh
Confidence 9999999999999999999999999999887 99999999999999999999999875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=249.92 Aligned_cols=352 Identities=15% Similarity=0.024 Sum_probs=279.7
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+++++...|.+++.+..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+++++
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345777788888889999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHH------------------------H----hHHHHHHHHH
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNE------------------------L----LKLQSFEKHL 161 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------------------------~----~~~~~~~~~~ 161 (543)
+.+|+++.++..++.++...+..++|+..++++...|+... . ..+..+..+.
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998999988888887665221100 0 0000001111
Q ss_pred ------------------HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 162 ------------------NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 162 ------------------~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
.....+...|++++|+..|+++++..|..+......++.+|..+|++++|+..|++++...|
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 11223467789999999999999887544444555579999999999999999999988877
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHH---hHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 009096 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT---NVKMVVRARTRGNNLFSSRRYSEACSA 300 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~---~~~~~~~~~~~g~~~~~~~~~~~A~~~ 300 (543)
.+..... .....++.++...|++++|+..++++....|.....+.... +-........+|.++...|++++|++.
T Consensus 304 ~~~~~~~--~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSD--EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCh--HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6522111 11222356778999999999999999988874322110000 000011123478999999999999999
Q ss_pred HHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 301 YGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 301 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++...|++++|...++++++..|+++
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 009096 381 EVAE 384 (543)
Q Consensus 381 ~~~~ 384 (543)
.+..
T Consensus 462 ~~~~ 465 (765)
T PRK10049 462 GVQR 465 (765)
T ss_pred HHHH
Confidence 8763
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=222.67 Aligned_cols=309 Identities=16% Similarity=0.103 Sum_probs=265.8
Q ss_pred HHHHHHhhHHH--hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 49 EEVKRAGNEMY--RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 49 ~~~~~~a~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+.+..+|..+. .+-+..+|+..|.+.-...++..+.+..+|..|+++++|++|..+|+.+-++.|-..+..-....++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44555565555 4456789999999966777888899999999999999999999999999999998777666666666
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
..+.+-- ++.++.+-+-..++. ..+.|...|.++.-+++++.|++.|+++++++|.+ ..+|.++|.-+....
T Consensus 398 WHLq~~v-~Ls~Laq~Li~~~~~------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDEV-ALSYLAQDLIDTDPN------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATE 469 (638)
T ss_pred HHHHhhH-HHHHHHHHHHhhCCC------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhH
Confidence 6665533 333333322211111 13458889999999999999999999999999988 788999999999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++|.|..+|+.++..+|.+ +.+|+.+|.+|.++++++.|.-.|++|++++|.+...... .|.
T Consensus 470 e~d~a~~~fr~Al~~~~rh------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~------------~g~ 531 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH------------IGR 531 (638)
T ss_pred HHHhHHHHHHhhhcCCchh------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh------------hhH
Confidence 9999999999999999998 5677777999999999999999999999999999877532 699
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++.+.|+.++|+..|++|+.++|.++...+..|.++..++++++|+..+++.-++-|++..+++.+|.+|.++|+.+.|+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHH
Q 009096 367 RDYEALRRELPGDNEVA 383 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~ 383 (543)
..|.-|..++|.-.++.
T Consensus 612 ~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126|consen 612 LHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HhhHHHhcCCCccchhh
Confidence 99999999999866643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-26 Score=222.31 Aligned_cols=284 Identities=15% Similarity=0.041 Sum_probs=185.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 122 (543)
.....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344556667777777777777777777777777777777777777777777777777777776643221 2345566
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.+|...|++++|+..|++++ +..|.. ..++..++.++
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l-----------------------------------------~~~~~~-~~~~~~la~~~ 151 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLV-----------------------------------------DEGDFA-EGALQQLLEIY 151 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-----------------------------------------cCCcch-HHHHHHHHHHH
Confidence 666666666666666655444 333332 44555566666
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++..|.+.... ....+..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------ 218 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVE-IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI------------ 218 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH------------
Confidence 666666666666666666555443211 1112334466777777777777777777777776655432
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.+|.++...|++++|++.|+++++.+|.+ ..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~ 297 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCC
Confidence 25777777777777777777777776655 345666777777777777777777777777776543 3677777777777
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+++|+..++++++..|++..+...+
T Consensus 298 ~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 298 PEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 7777777777777777766554333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=212.47 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=282.0
Q ss_pred cccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHH
Q 009096 26 RSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105 (543)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 105 (543)
+.+..+.|++.++.+++..|..+-.+-+++-+|...|+|++-++...++++++|+...+++.++.++..+|++++|+...
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 44445668889999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred HHH------------------Hhc--------------CCC---------------------------------------
Q 009096 106 EEA------------------VRL--------------DPG--------------------------------------- 114 (543)
Q Consensus 106 ~~a------------------l~~--------------~p~--------------------------------------- 114 (543)
.-. ++. .|.
T Consensus 207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~ 286 (606)
T KOG0547|consen 207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA 286 (606)
T ss_pred hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence 321 100 000
Q ss_pred -----------------------------C---------hhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHH
Q 009096 115 -----------------------------Y---------NRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQ 155 (543)
Q Consensus 115 -----------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~ 155 (543)
+ ..++...|..++..|++-.|...|++++. .+.+.
T Consensus 287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~------ 360 (606)
T KOG0547|consen 287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN------ 360 (606)
T ss_pred HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc------
Confidence 0 22344445555555666666666666665 22221
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHH
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVW 235 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
..++.++..|....+.++....|.++..++|.+ +.+|+.+|.+++-++++++|+..|++++.++|.+..++..+
T Consensus 361 --~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl--- 434 (606)
T KOG0547|consen 361 --SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQL--- 434 (606)
T ss_pred --hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHH---
Confidence 227888999999999999999999999999998 78899999999999999999999999999999996655555
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY----- 310 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----- 310 (543)
+.+.+++++++++...|+.+.+..|..++++.+ .|.++..+++|++|++.|.+++++.|.
T Consensus 435 ---~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~------------fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 435 ---CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL------------FAEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH------------HHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 888999999999999999999999999999765 488999999999999999999999998
Q ss_pred -ChhHHhHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 311 -NSILYCNRAICWS-KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 311 -~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
++..+.+.|.+.. -.+++..|+..++++++++|....++..+|.+..++|+.++|+++|+++..+.....+.......
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555655555433 45899999999999999999999999999999999999999999999999987666665555444
Q ss_pred HHHH
Q 009096 389 AQVA 392 (543)
Q Consensus 389 ~~~~ 392 (543)
+...
T Consensus 580 aeAA 583 (606)
T KOG0547|consen 580 AEAA 583 (606)
T ss_pred HHHH
Confidence 4333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=236.74 Aligned_cols=351 Identities=14% Similarity=0.041 Sum_probs=275.4
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...++..+.+....+|..+..+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33455556666667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hHHHHHHH----------------------------
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LKLQSFEK---------------------------- 159 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~---------------------------- 159 (543)
+.+|+++. +..+|.++...|++++|+..++++++ .|+.... ..+..+..
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~ 189 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEAD 189 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999 99999999999999999999999998 4444322 21111100
Q ss_pred -HHHHHHhh-----hhcCCH---HHHHHHHHHHHHcC---CCCCHH---HHHHHHHHHHHccChhHHHHHhhcCCCCCCC
Q 009096 160 -HLNRCAES-----RKIGDW---KTVLRETDAAIAIG---VDSSPQ---LVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224 (543)
Q Consensus 160 -~~~~~~~~-----~~~~~~---~~A~~~~~~~l~~~---p~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 224 (543)
........ ...+++ ++|+..++++++.. |+..+. +...+...+...|++++|+..|+++++..+.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 00000011 111233 67788888888653 332221 1122123456779999999999999988755
Q ss_pred CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH-HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009096 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI-ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
.+.... ...|.++...|++++|+..|++++..+|.+... ... ...++.++...|++++|+..+++
T Consensus 270 ~P~~a~-----~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~---------~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 270 IPPWAQ-----RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE---------LADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred CCHHHH-----HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH---------HHHHHHHHHhcccHHHHHHHHHH
Confidence 433211 112889999999999999999999988876211 011 12357778999999999999999
Q ss_pred HhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 304 GLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 304 al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+....|.. ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99887732 346788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++++++|++..+...+..+...+++
T Consensus 416 l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 416 LKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 999999999999988777666555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=219.23 Aligned_cols=357 Identities=15% Similarity=0.081 Sum_probs=295.6
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.|...+...+...|.|+-.++..|...+..|+|-.|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 45666777888999999999999999999999999999999999999976 67888999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCC---HHHHHHHhcCCCC--CCChHHHhH----------------------------HHHH
Q 009096 111 LDPGYNRAHQRLASLYFRLGQ---VENARHHLCFPGH--HPDPNELLK----------------------------LQSF 157 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~--~~~~~~~~~----------------------------~~~~ 157 (543)
++|.+..++..||.+-....+ +..+...+.++.. ..+|..... ....
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 998888887777776555443 4455556655554 333332211 1234
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
+.++.+|..+..+|+|++|..+|.++++.++++....++.+|.++...|+++.|..+|+++++..|++......+
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL----- 382 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL----- 382 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH-----
Confidence 567889999999999999999999999999888677788899999999999999999999999999996655554
Q ss_pred HHHHHHhhc----ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH--------------------------HHHHHHHHHH
Q 009096 238 KLMFNISEL----RFENAVSSAEKAGLLDYSNVEIASVLTNVKM--------------------------VVRARTRGNN 287 (543)
Q Consensus 238 ~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------------------------~~~~~~~g~~ 287 (543)
|.+|...+ ..+.|..+..++++..|.+.++|..+..+.. ...+.++|..
T Consensus 383 -G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 -GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred -HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 77776665 6688899999999999999888876654321 1125678999
Q ss_pred HHhcCCHHHHHHHHHHHhcc-----CCCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 288 LFSSRRYSEACSAYGEGLKY-----DSYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
++..|++.+|...|.+|+.. +++. ....+|+|.|+..+++++.|.+.|..++..+|...+++..+|....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 99999999999999999876 2222 2468999999999999999999999999999999999999998888
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
..++..+|...++.++..+..+|+++..++.+.....
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 8899999999999999999999999999997665543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-25 Score=230.57 Aligned_cols=325 Identities=12% Similarity=0.016 Sum_probs=268.7
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCC-----------------
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGR----------------- 97 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~----------------- 97 (543)
.......|.+.+.+...+....+.|++++|...|+.+....++- ......++.+|...+.
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 33445568899999999999999999999999999999863322 2344477777776544
Q ss_pred --------H---HHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHH
Q 009096 98 --------L---TEAVSDCEEAVRLDPG--YNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNR 163 (543)
Q Consensus 98 --------~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ 163 (543)
. ..+...+.+++...|. ++.+|+.+|.++.. ++..+|+..+.+++. .|+.. ..+..
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---------~~L~l 515 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---------QHRAV 515 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---------HHHHH
Confidence 2 2344555666667788 99999999999998 899999998888876 44321 25556
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI 243 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 243 (543)
+..+...|++++|+..+++++...|.. ..+..+|.++...|++++|+.+++++++..|........ ++....
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~------La~~l~ 587 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWW------LHAQRY 587 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHH------HHHHHH
Confidence 777789999999999999988775543 346778999999999999999999999998887432222 244555
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|+++++.+|+ ...+ ..+|.++.+.|++++|+..|+++++++|+++.++.++|.++.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~------------~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAY------------VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 669999999999999999996 5553 347999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..+....+......
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876665544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=217.32 Aligned_cols=345 Identities=20% Similarity=0.177 Sum_probs=212.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
-++.+|.+|.++..+|+|++|..+|.++++.+|++ .-.++.+|..|+..|+++.|..+|+++++..|++.+....||.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 34455555555555555555555555555555555 44555555555555555555555555555555555555555555
Q ss_pred HHHhC----CHHHHHHHhcCCCC--CCChHHHhHHHH-----------------------------HHHHHHHHHhhhhc
Q 009096 126 YFRLG----QVENARHHLCFPGH--HPDPNELLKLQS-----------------------------FEKHLNRCAESRKI 170 (543)
Q Consensus 126 ~~~~g----~~~~A~~~~~~a~~--~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~ 170 (543)
|...+ ..+.|..++.++++ +.+...+..+.. .+.+.+.|..++..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 55543 33444445444444 111111111100 11233344555556
Q ss_pred CCHHHHHHHHHHHHHc-----CCCC----CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 171 GDWKTVLRETDAAIAI-----GVDS----SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~-----~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
|++++|...+.+++.. +++. .....+++|.++..+++++.|.+.|..+++.+|...+.+..+ |.+
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl------~~m 539 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL------GCM 539 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh------hHH
Confidence 6666666666666554 1111 012355566666666666666666666666666654333333 555
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH------------------------HHHHHHHHHHHh-------
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV------------------------VRARTRGNNLFS------- 290 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------------~~~~~~g~~~~~------- 290 (543)
....+...+|...++.++..+..++.++.++.++... -++..+|+.+++
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 5556677777777777777777777777766643211 113456665543
Q ss_pred -----cCCHHHHHHHHHHHhccCCCC----------------------------------hhHHhHHHHHHHHccCHHHH
Q 009096 291 -----SRRYSEACSAYGEGLKYDSYN----------------------------------SILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 291 -----~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~la~~~~~~g~~~~A 331 (543)
.+.+++|+.+|.++++.+|.+ ..+|.|+|.||..+|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 356778888888888888765 46788888888888888888
Q ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 332 IEDCNVALRIQ--PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 332 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
++.|+.+++.. .++++++..||.+++..|++.+|.+...+|+.+.|.++.+..+++.+...+....
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 88888888753 3567888888888888888888888888888889999888888887777665443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=228.37 Aligned_cols=296 Identities=12% Similarity=-0.022 Sum_probs=255.8
Q ss_pred HHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 67 ALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 67 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+...+.+++...|. ++.+++++|.|+.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|++++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~ 537 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL 537 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45556666667788 89999999999998 899999999999999999754 466678888899999999999998876
Q ss_pred C-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 145 H-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
. +.+. .++..+..+...|++++|+..++++++.+|+. ...+..++......|++++|+..++++++.+|
T Consensus 538 ~~p~~~---------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 538 HDMSNE---------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred cCCCcH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 3 3322 25667888899999999999999999998877 44555556666677999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009096 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
+ .. .+..+|.++...|++++|+..|++++.++|+++.++ .++|.++...|++++|+..|++
T Consensus 608 ~-~~------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~------------~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 608 S-AN------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ------------AALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred C-HH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 5 43 344559999999999999999999999999999875 3479999999999999999999
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
+++.+|+++.+++++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.++++..++|+.. +.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~ 747 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IG 747 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 55
Q ss_pred HHHHHHHHHHH
Q 009096 384 ESLHNAQVALK 394 (543)
Q Consensus 384 ~~l~~~~~~l~ 394 (543)
...+......+
T Consensus 748 ~~~g~~~~~~~ 758 (987)
T PRK09782 748 LRSGAMSTANN 758 (987)
T ss_pred cccchHhhhcc
Confidence 55554444333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=191.29 Aligned_cols=323 Identities=12% Similarity=0.022 Sum_probs=236.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHH-----------------------------HHHHcC
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAA-----------------------------TLTALG 96 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-----------------------------~~~~~g 96 (543)
.|+-.++..|..+.+.|..+.|+..|..++...|.+..+|..|+. ++..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999998987777765554 344555
Q ss_pred CHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHH---HH---H----H--H---
Q 009096 97 RLTEAVSDCEEAVRL-DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ---SF---E----K--H--- 160 (543)
Q Consensus 97 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~---~----~--~--- 160 (543)
+.++++..++..+.. -|.+...-...|.+.....++++|+..|+...+. +|-....+. ++ . . +
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 677888888888877 7888888889999999999999999999998873 332211110 00 0 0 0
Q ss_pred -------------HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh
Q 009096 161 -------------LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP 227 (543)
Q Consensus 161 -------------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 227 (543)
.-.|..|.-.++.++|+.+|+++++++|.. ..+|.++|.-|..+++...|+..|+++++++|.+
T Consensus 321 ~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D-- 397 (559)
T KOG1155|consen 321 NVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD-- 397 (559)
T ss_pred HHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh--
Confidence 012344455667777777777777777776 5667777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 228 SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
..+|+.+|++|..++.+.=|+-+|++++...|.++..|.. +|.+|.+.++.++|+++|.+++..
T Consensus 398 ----yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a------------LG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 398 ----YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA------------LGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred ----HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH------------HHHHHHHhccHHHHHHHHHHHHhc
Confidence 4566666777777777777777777777777777777644 577777777777777777777777
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALR-------IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
...+..++..+|.+|.++++.++|..+|++.++ ..|+-..+...|+.-+.+.+++++|..+..+++.-++.-.
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 777777777777777777777777777777776 3454556666777777777777777777777777665555
Q ss_pred HHHHHHHH
Q 009096 381 EVAESLHN 388 (543)
Q Consensus 381 ~~~~~l~~ 388 (543)
++...+..
T Consensus 542 eak~LlRe 549 (559)
T KOG1155|consen 542 EAKALLRE 549 (559)
T ss_pred HHHHHHHH
Confidence 55544433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=207.18 Aligned_cols=286 Identities=15% Similarity=0.153 Sum_probs=239.4
Q ss_pred hhHHhHHHHHHHc--CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHH
Q 009096 83 AYRSNRAATLTAL--GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEK 159 (543)
Q Consensus 83 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~ 159 (543)
..+..+|..|... -+..+|+..|.+.-...++-...+..+|..|+.+++|++|..+|+.+-+ .|-.-. .+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~--~mei--- 392 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK--GMEI--- 392 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--chhH---
Confidence 4455666666554 4668999999997777788889999999999999999999999988765 111110 0000
Q ss_pred HHHHHHhhhhcCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLR-ETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+ ..++..+.+-- ++. +.+..+..+|.. |..|..+|.||..+++++.|+++|+++++++|.....+..+
T Consensus 393 y---ST~LWHLq~~v-~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLl------ 461 (638)
T KOG1126|consen 393 Y---STTLWHLQDEV-ALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLL------ 461 (638)
T ss_pred H---HHHHHHHHhhH-HHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhc------
Confidence 0 01111111111 222 234556666665 89999999999999999999999999999999986544444
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
|.-+.....++.|..+|++++..+|.+..+| +.+|.+|.++++++.|.-.|++|++++|.+......+
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw------------YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~ 529 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAW------------YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI 529 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHH------------HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh
Confidence 8889999999999999999999999999987 4589999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
|..+.++|+.++|+..|++|+.++|.++-..+.+|.++..++++++|+..+++..++-|++..+...++++...+++.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=201.43 Aligned_cols=321 Identities=18% Similarity=0.198 Sum_probs=259.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
.+.....++..|+.++..|++++|..++.++++++|.++.+|+.||.+|..+|+.++|+..+-.|-.++|.+.+.|..++
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP----QLVACK 198 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~ 198 (543)
.....+|++.+|+-+|.++++ .|... ...+.++..+.+.|+...|...|.+++...|.... ......
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 999999999999999999998 33332 34678889999999999999999999999984322 223335
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHH---------
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVE--------- 267 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~--------- 267 (543)
+..+...++-+.|++.++.++....+... ...+...+.++.....++.|......... ..+++.+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEAS----LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhcccccc----ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 67778888889999999998873222110 11112227778888888888877665543 1111110
Q ss_pred -----------------H-HHHHHh-----------------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 009096 268 -----------------I-ASVLTN-----------------------VKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306 (543)
Q Consensus 268 -----------------~-~~~l~~-----------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 306 (543)
+ ...... .....-+++++.++...|+|.+|+.+|..+..
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 0 000000 01122267899999999999999999999988
Q ss_pred cCCC-ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 307 YDSY-NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 307 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+. +..+|+.+|.||..+|.+++|+.+|++++...|++.++...|+.++.++|++++|.+.++....-+
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 7654 367999999999999999999999999999999999999999999999999999999998877333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=192.81 Aligned_cols=289 Identities=15% Similarity=0.128 Sum_probs=254.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
..+.+.+...++.++..++|.+-.+.++..++.+|-+...+-..-.|+..+|+..+=...-.+.++..|+.+..|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 45788899999999999999999999999999999887666554459999999998888888999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
.|...|++.+|..+|. ++..++|.. ..+|...|..+..
T Consensus 321 YYl~i~k~seARry~S-----------------------------------------Kat~lD~~f-gpaWl~fghsfa~ 358 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFS-----------------------------------------KATTLDPTF-GPAWLAFGHSFAG 358 (611)
T ss_pred HHHHhcCcHHHHHHHH-----------------------------------------HHhhcCccc-cHHHHHHhHHhhh
Confidence 9988888888887774 445566776 5667888999999
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
.++.++|+.+|..+-++.|....+...+ |.-|...++++-|...|..|+.+.|.++-+. ..+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~hlP~LYl------gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~------------~El 420 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGCHLPSLYL------GMEYMRTNNLKLAEKFFKQALAIAPSDPLVL------------HEL 420 (611)
T ss_pred cchHHHHHHHHHHHHHhccCCcchHHHH------HHHHHHhccHHHHHHHHHHHHhcCCCcchhh------------hhh
Confidence 9999999999999999999987766666 8899999999999999999999999999874 458
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccC----CC---ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYD----SY---NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
|.+.+..+.|.+|..+|+.++..- +. -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|.
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ 500 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYH 500 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 999999999999999999998432 22 23568999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
.+|+++.|+++|.+++-+.|++..+...|+.+....
T Consensus 501 llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 501 LLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 999999999999999999999999998888665553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=203.93 Aligned_cols=287 Identities=13% Similarity=-0.020 Sum_probs=235.0
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSD 104 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 104 (543)
....|...+.+++..+|.++..++.+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..
T Consensus 50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 129 (389)
T PRK11788 50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL 129 (389)
T ss_pred ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34458888999999999999999999999999999999999999998854322 35788999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
|+++++.+|.+..++..++.++...|++++|+..++++++
T Consensus 130 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------------------------------------- 169 (389)
T PRK11788 130 FLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK---------------------------------------- 169 (389)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999988866543
Q ss_pred HcCCCC----CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 185 AIGVDS----SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 185 ~~~p~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
..|.. ....+..+|.++...|++++|+..++++++..|++.. .++.+|.++...|++++|+..+++++.
T Consensus 170 -~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 170 -LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR------ASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred -hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 0223456778888888888888888888888777644 334448899999999999999999998
Q ss_pred cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 261 LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|.+.... +..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++
T Consensus 243 ~~p~~~~~~-----------~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 243 QDPEYLSEV-----------LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HChhhHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888754321 123688999999999999999999999998654 48899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHh
Q 009096 341 IQPNYTKALLRRAVSNEK--LGRWSEAVRDYEALRR 374 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 374 (543)
..|++......++..+.. .|+..+|+..+++.++
T Consensus 311 ~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 311 RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999988665445444422 5688899888887664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-22 Score=179.60 Aligned_cols=298 Identities=16% Similarity=0.131 Sum_probs=245.2
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
|+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+........ ..-..+. .+ .. .-.-
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~---~l~~~l~--~~-~h------~M~~ 230 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS---ILVVGLP--SD-MH------WMKK 230 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH---HHHhcCc--cc-ch------HHHH
Confidence 56778899999999999999999999999999999999999988865432211 1111110 00 10 1112
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH-HHHHH-
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL-VWLLK- 238 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 238 (543)
+-+..++....+.++++..+.......-.....+-...|.+.....++++|+..|+.+.+.+|-..+....+. .++.+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 2244555666688889999998888854455777788899999999999999999999999886533221111 11111
Q ss_pred --------------------------HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 239 --------------------------LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 239 --------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
|+.|...++.++|+.+|+++++++|....+|.+ +|.-|..++
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTL------------mGHEyvEmK 378 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTL------------MGHEYVEMK 378 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHH------------hhHHHHHhc
Confidence 788888899999999999999999999999865 699999999
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
+...|++.|++|++++|.+..+|+.+|++|.-++...=|+-+|++|+++.|+++..|..+|.||.++++.++|+++|.++
T Consensus 379 Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 009096 373 RRELPGDNEVAESLHNAQVALKKSRGEFVN 402 (543)
Q Consensus 373 l~~~p~~~~~~~~l~~~~~~l~~~~~~~~~ 402 (543)
+.....+..+...|+++...++...+...+
T Consensus 459 i~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 459 ILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999877665444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-21 Score=200.25 Aligned_cols=345 Identities=14% Similarity=0.032 Sum_probs=247.6
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+++++...|.....+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|++.++++.
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 33455556666644455555555557777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH-hHHH--------------------------------
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL-LKLQ-------------------------------- 155 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~-~~~~-------------------------------- 155 (543)
..+|.+... ..++.++...++..+|+..+++++. .|+.... ..+.
T Consensus 164 ~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 164 ERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred ccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 777765443 4455555556666667777777766 3332221 0000
Q ss_pred ------------------------------H------------------HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 156 ------------------------------S------------------FEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 156 ------------------------------~------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
. ......+...+...+++.+++..|+.+....
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 0 0001112233345566777777777666555
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC---
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--- 264 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--- 264 (543)
.+.+..+....|..|+..++.++|+.+|.+++...|........+.....+-..+...+++++|..++++..+..|-
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 44456677778999999999999999999987765421110001111122255788899999999999998875551
Q ss_pred ---------cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 265 ---------NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 265 ---------~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
+++.. .....++..+...|++.+|++.+++.+...|.+..++..+|.++...|.+.+|...+
T Consensus 403 ~~~~~~~~pn~d~~---------~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 403 VYGLPGKEPNDDWI---------EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred ccCCCCCCCCccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111 112337888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 336 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+.+..++|++..+.+.+|.++..+|++.+|....+++++..|+++.+..
T Consensus 474 k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 474 KAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999999999999999999999997764
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-24 Score=164.92 Aligned_cols=99 Identities=25% Similarity=0.378 Sum_probs=91.8
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+..+.-+.+++++.||+|+|||+||+||+++.|.++++..+|.| ++|+++|+|+..+++.+|+|..+||+++|+||+++
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 44455556778899999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCC
Q 009096 493 KEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++++|. +.+.++++|++++.
T Consensus 129 d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 129 DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeecccCCHHHHHHHHHHHhc
Confidence 999999 99999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-24 Score=197.37 Aligned_cols=263 Identities=22% Similarity=0.238 Sum_probs=112.4
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
.+.+|..++..|++++|++.+++.+.. .|+++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 346799999999999999999766544 488889999999999999999999999999999988888888888888 68
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCh
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQN 208 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~ 208 (543)
.+++++|+..++++.+. .+ .+..+.....++...+++
T Consensus 90 ~~~~~~A~~~~~~~~~~-----------------------------------------~~--~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER-----------------------------------------DG--DPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred ccccccccccccccccc-----------------------------------------cc--ccchhhHHHHHHHHHhHH
Confidence 88888888877665431 11 122333445566777777
Q ss_pred hHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 209 EDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 209 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
+++...++++.... +.+ ...|...|.++...|+.++|+..|+++++.+|+++.+.. .++.
T Consensus 127 ~~~~~~l~~~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------------~l~~ 188 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDS------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------------ALAW 188 (280)
T ss_dssp HHHHHHHHHHHH-T---T-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------------HHHH
T ss_pred HHHHHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------------HHHH
Confidence 77777777754322 222 223455599999999999999999999999999998853 3688
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++...|+++++.+.+....+..|+++..+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 009096 367 RDYEALRRE 375 (543)
Q Consensus 367 ~~~~~al~~ 375 (543)
..++++++.
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=171.58 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=258.2
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|++.+-.++..+|.+-.+++..|-.|...|+-.-|+..+.+.|++.|+...+...+|.+++++|++++|...|+.++
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 34578888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCh---hHH------------HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 110 RLDPGYN---RAH------------QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 110 ~~~p~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+.+|++. ++. ......+...|++..|+......++....+ +..+..++.+|...|+..
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYIAEGEPK 206 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHHhcCcHH
Confidence 9999642 222 223344566689999999988887622222 334667889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH------HHHHHHHHHHhhcCh
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------VWLLKLMFNISELRF 248 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~g~~ 248 (543)
.|+..++.+-++..++ .+.++..+.+++..|+.+.++...+..++++|++..-...+. -.+..+......++|
T Consensus 207 ~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999999999997666 788889999999999999999999999999999854333221 122236667788999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
.++++..++.++.+|..+.+..-. ...+..++...+++.+|+..+.+++..+|++..++..++.+|+-...|
T Consensus 286 t~cle~ge~vlk~ep~~~~ir~~~--------~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMIRYNG--------FRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHHHHHHHHHHhcCCcccceeeee--------eheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 999999999999999865543211 112567888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
+.|+..|++|.+.++++..+.-.+-
T Consensus 358 D~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999987765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-20 Score=190.28 Aligned_cols=352 Identities=10% Similarity=-0.034 Sum_probs=260.5
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
.+....|+..++++++.+|.++.....++..+...|++++|+.++++++...|.....+..+|.++...|++++|++.|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344678888888888888865555777888888899999999988883333344444445779999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
++++.+|+++.++..++.++...++.++|+..+++++. .+.... +..++..+...++..+|+..++++++
T Consensus 127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---------~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---------YMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---------HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 333111 23334555557777779999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhc------------------------------------------------
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSN------------------------------------------------ 217 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~------------------------------------------------ 217 (543)
.+|++ ..++..+..++...|-...|.+...+
T Consensus 198 ~~P~n-~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPTS-EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 99987 67777777777777766555554432
Q ss_pred CCCCCCCCChhHHH-HHHHHHH-----------------------------------HHHHHhhcChHHHHHHHHHHhhc
Q 009096 218 MPKFEHYSPPSQVK-FLVWLLK-----------------------------------LMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 218 ~~~~~~~~~~~~~~-~~~~~~~-----------------------------------a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
++...+..+..... ..+...+ |..|...+++++|+..|+.++.-
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 22211222211000 0111111 66666666667777777666654
Q ss_pred CCCc----HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---------------CChhHHhHHHHHH
Q 009096 262 DYSN----VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS---------------YNSILYCNRAICW 322 (543)
Q Consensus 262 ~p~~----~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~~ 322 (543)
.|+. ... .....+..++...++|++|..++++..+..| +...+...++.++
T Consensus 357 ~~~~~~~~~~~----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 357 DGKTFRNSDDL----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred cccccCCCcch----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 4211 111 0012367789999999999999999987544 2356778899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
...|++.+|.+.+++.+...|.|+..+..+|.++...|++.+|...++.+..++|++..+......+...++.-++
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888887777765443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=183.44 Aligned_cols=259 Identities=18% Similarity=0.169 Sum_probs=204.4
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
=+..|..+++.|...+|+-+|+.+++.+|.+.++|..||.++...++-..|+..++++++++|++..++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
.-.+|+.++.+-+. ..|.. .+...+. ..+++..
T Consensus 368 ~q~~Al~~L~~Wi~-----------------------------------------~~p~y---~~l~~a~---~~~~~~~ 400 (579)
T KOG1125|consen 368 LQNQALKMLDKWIR-----------------------------------------NKPKY---VHLVSAG---ENEDFEN 400 (579)
T ss_pred hHHHHHHHHHHHHH-----------------------------------------hCccc---hhccccC---ccccccC
Confidence 88888887754432 22211 0000000 0000000
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC--CcHHHHHHHHhHHHHHHHHHHHHHH
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY--SNVEIASVLTNVKMVVRARTRGNNL 288 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~g~~~ 288 (543)
- ..+.+.. .+..-.+.|-.+....| .++++.. .+|.+|
T Consensus 401 ~---------~s~~~~~-------------------~l~~i~~~fLeaa~~~~~~~DpdvQ~------------~LGVLy 440 (579)
T KOG1125|consen 401 T---------KSFLDSS-------------------HLAHIQELFLEAARQLPTKIDPDVQS------------GLGVLY 440 (579)
T ss_pred C---------cCCCCHH-------------------HHHHHHHHHHHHHHhCCCCCChhHHh------------hhHHHH
Confidence 0 0011111 11222344555555566 5566543 379999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
...|+|++|+++|+.||...|++...|+.||..+..-.+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----------ChHHHHHHHHHHHHHHhh
Q 009096 369 YEALRRELPG----------DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 369 ~~~al~~~p~----------~~~~~~~l~~~~~~l~~~ 396 (543)
|-.||.+.+. +..+|..|..+...+++.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 9999998775 135788887666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-20 Score=181.85 Aligned_cols=303 Identities=14% Similarity=0.012 Sum_probs=243.6
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN-RAHQRLASLY 126 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 126 (543)
.......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 445577888899999999999999999999998888888999999999999999999999999999875 4666679999
Q ss_pred HHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 009096 127 FRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA---CKAEAH 202 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~---~~a~~~ 202 (543)
...|+++.|...++++.+ .|+.. ..+...+..+...|++++|+..+.+..+........... .....+
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~--------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHK--------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887 34333 235667888899999999999999999875444232211 122222
Q ss_pred HHccChhHHHHHhhcCCCCCCC----CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHY----SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
...+..+++...+..+....|. ++. .+...+..+...|++++|.+.++++++..|++.......
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~------l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~------ 303 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIA------LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL------ 303 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHH------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH------
Confidence 4444555555677777666663 433 333448899999999999999999999999987532100
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh--hHHhHHHHHHHHccCHHHHHHHHH--HHHhhCCCCHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS--ILYCNRAICWSKMGLWENSIEDCN--VALRIQPNYTKALLRRAV 354 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~ 354 (543)
-........++.+.+++.++++++..|+++ .++..+|.++.+.|++++|.++|+ .+++..|++.. +..+|.
T Consensus 304 ----l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ 378 (409)
T TIGR00540 304 ----CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAAD 378 (409)
T ss_pred ----HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHH
Confidence 023344556888999999999999999999 889999999999999999999999 57778887665 559999
Q ss_pred HHHHccCHHHHHHHHHHHHhc
Q 009096 355 SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~ 375 (543)
++.++|+.++|.++|++++..
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=167.54 Aligned_cols=317 Identities=12% Similarity=-0.015 Sum_probs=263.2
Q ss_pred HHhhHHHhcCCHHHH--HHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 53 RAGNEMYRKGNFVEA--LKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 53 ~~a~~~~~~g~~~~A--~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
..+......++...| ..++-.-...-|+|...+..+|.|++..|++++|+..|+++..++|....+.-..|.++...|
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 344444555555544 455566667789999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
+++.-...........+ .....|+-.+...+..++++.|+.+-+++|..+|.+ ...+...|.++..+++.++
T Consensus 281 ~~e~~~~L~~~Lf~~~~-------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVK-------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-HEALILKGRLLIALERHTQ 352 (564)
T ss_pred CHhhHHHHHHHHHhhhh-------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-chHHHhccHHHHhccchHH
Confidence 99876554433332111 112346667777888999999999999999999988 6778889999999999999
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS 290 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~ 290 (543)
|+-.|+.+..+.|.+-. .+-.+-.+|...|++.+|...-+.+++..|.+.....++.. -.++..
T Consensus 353 A~IaFR~Aq~Lap~rL~------~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~----------~V~~~d 416 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLE------IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGT----------LVLFPD 416 (564)
T ss_pred HHHHHHHHHhcchhhHH------HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcc----------eeeccC
Confidence 99999999999998844 44444788999999999999999999999998877654310 122333
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
-.--++|.+++++++.++|....+-..++.++...|.++.++..+++.+...|+. ..+..+|.++...+.+.+|.++|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3446899999999999999999999999999999999999999999999998874 678899999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHH
Q 009096 371 ALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 371 ~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
.|+.++|++......+.+.....+
T Consensus 496 ~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999988876655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-19 Score=169.66 Aligned_cols=330 Identities=14% Similarity=0.027 Sum_probs=267.2
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+...+..+++..|.+-..|...+..-...|..++-..++++++..-|.....|.+.+.-+...|+...|...+..+++.+
T Consensus 535 arAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 535 ARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 33345567788899999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
|++.+.|+.--.+.....+++.|...|.++.. .+... .|+..+.....+++.++|+..++++++..|++
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR---------v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f- 684 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER---------VWMKSANLERYLDNVEEALRLLEEALKSFPDF- 684 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch---------hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-
Confidence 99999999999999999999999999998876 33333 35566666778899999999999999999998
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+|..+|.++.++++.+.|...|...++..|.....|..+ +.+-.+.|+.-.|...++++.-.+|++...|..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL------akleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL------AKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH------HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 88999999999999999999999999999999997755544 899999999999999999999999999998733
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.-.+-.+.|+.+.|.....+|++..|.+..+|..-....-+-++-..++. |++....++.++..
T Consensus 759 ------------~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVlla 822 (913)
T KOG0495|consen 759 ------------SIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLA 822 (913)
T ss_pred ------------HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHH
Confidence 34566788999999999999999888876666554444444444333333 33334455666666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
.|..+....++++|.++|.++++.+|++.++|..+.+.....+
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 6666666666666666666666666666666666666555555
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=188.77 Aligned_cols=248 Identities=13% Similarity=-0.004 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTAL---------GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
+++|+.+|+++++++|+++.++..+|.+|... +++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 44555555555555555555555555544422 124555555555555555555555555555444444444
Q ss_pred HHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHH
Q 009096 135 ARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSC 214 (543)
Q Consensus 135 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~ 214 (543)
|+.. |+++++++|++ +.+++.+|.++...|++++|+..
T Consensus 357 A~~~-----------------------------------------~~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 357 GSLL-----------------------------------------FKQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHH-----------------------------------------HHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 4333 34455555554 44555566666666666666666
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC
Q 009096 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293 (543)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 293 (543)
++++++++|.++...... +.+++..|++++|+..+++++... |+++..+. .+|.++...|+
T Consensus 395 ~~~Al~l~P~~~~~~~~~------~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~------------~la~~l~~~G~ 456 (553)
T PRK12370 395 INECLKLDPTRAAAGITK------LWITYYHTGIDDAIRLGDELRSQHLQDNPILLS------------MQVMFLSLKGK 456 (553)
T ss_pred HHHHHhcCCCChhhHHHH------HHHHHhccCHHHHHHHHHHHHHhccccCHHHHH------------HHHHHHHhCCC
Confidence 666666666653322111 333444566666666666665543 44444321 24555666666
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+++|...+.++....|.+..++..++..|...|+ .|...+++.++..-..+.-......++.-.|+.+.|..+ +++.
T Consensus 457 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 457 HELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhh
Confidence 6666666666555555555555666666555553 444444444433222221122255555555555555554 4444
Q ss_pred h
Q 009096 374 R 374 (543)
Q Consensus 374 ~ 374 (543)
+
T Consensus 534 ~ 534 (553)
T PRK12370 534 N 534 (553)
T ss_pred c
Confidence 3
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=175.28 Aligned_cols=207 Identities=16% Similarity=0.067 Sum_probs=138.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
+..|++++|.+.|+.++..+... ..+++++|..+..+|+.++|+.+|-++-.+--++. ..++..+.+|..+.+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il~nn~------evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA------EVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHhhC
Confidence 34455555555555555443322 44455555555555555555555554433322222 223333566666666
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
..+|++++.++..+-|+++.+. ..+|..|-+.|+-.+|..++-......|.+.++.-+||..|....-
T Consensus 574 ~aqaie~~~q~~slip~dp~il------------skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAIL------------SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHH------------HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 6666666666666666666553 2356667777777777777767677777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 328 WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 328 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+++|+.+|+++.-+.|+........+.|+.+.|+|.+|.+.|+..-...|++.+....|.++.-.+
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 889999999999999998888889999999999999999999999999999988887776654444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-20 Score=181.47 Aligned_cols=345 Identities=13% Similarity=0.063 Sum_probs=268.5
Q ss_pred ccccccccccccccc-CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH
Q 009096 16 TGNYGHGSIVRSCSS-NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA 94 (543)
Q Consensus 16 ~~~~g~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (543)
...+|.+..+-..+. ..|...+...++.+|.++.+|+.+|.+|-++|+.+++....-.|-.++|++.+.|..++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 344555555544433 4477778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+|++++|.-+|.+|++.+|.+....+..+.+|.++|+...|...|.+++....+..+.... ......+..+...++-+
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~--d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIE--DLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHH--HHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999833344333222 22334466677777779
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHccChhHHHHHhhcCCC----------------------CC--CCC----
Q 009096 175 TVLRETDAAIAIGV-DSSPQLVACKAEAHLKLHQNEDADSCLSNMPK----------------------FE--HYS---- 225 (543)
Q Consensus 175 ~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------~~--~~~---- 225 (543)
.|++.++.++.... .....-+..++.+++....++.|......... .. |+.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999999888322 12234466778899999998888776654333 00 000
Q ss_pred -Ch-----------------------------hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 226 -PP-----------------------------SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 226 -~~-----------------------------~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
+. .......++..+..+...|++.+|+.+|..+....+......
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v------ 451 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV------ 451 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh------
Confidence 00 000111233448889999999999999999887766554221
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------H
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---------T 346 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~ 346 (543)
|+.+|.+|..+|.+++|+++|++++...|++..+...|+.++.++|+.++|.+.+.+.+.-++.+ .
T Consensus 452 -----w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ 526 (895)
T KOG2076|consen 452 -----WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPER 526 (895)
T ss_pred -----hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHH
Confidence 34589999999999999999999999999999999999999999999999999999877433222 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
.....+..++...|+.++=+..-...+
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456788899999999988444443333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=171.46 Aligned_cols=263 Identities=12% Similarity=0.087 Sum_probs=221.9
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
.+..+..+|-+...+-..-.+++..|+..+-...-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|...
T Consensus 267 t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 267 TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 44566778888877765555999999999988888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.+|...|..+...|+.++|+.+|..| -++-|..... ..
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tA-----------------------------------------arl~~G~hlP-~L 384 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTA-----------------------------------------ARLMPGCHLP-SL 384 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHH-----------------------------------------HHhccCCcch-HH
Confidence 99999999999999988888877444 3333433222 33
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc----CCCcHHHHHHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL----DYSNVEIASVL 272 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 272 (543)
.+|.-|..+++++-|.+.|.+++.+.|.++.....+ |.+.+..+.|.+|..+|++++.. .++.. .|.-+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~ 457 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPT 457 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh------hheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHH
Confidence 458889999999999999999999999998776666 88999999999999999999832 22222 12211
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
+.++|.++.+.+++++|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+--.|
T Consensus 458 --------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 458 --------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred --------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999997666666
Q ss_pred HHHH
Q 009096 353 AVSN 356 (543)
Q Consensus 353 a~~~ 356 (543)
+.+.
T Consensus 530 ~~ai 533 (611)
T KOG1173|consen 530 KLAI 533 (611)
T ss_pred HHHH
Confidence 6444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=171.51 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHhc---CCc-chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 61 KGNFVEALKLYDKAISM---SPE-NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
.++.+.++..+.+++.. +|. .+..|+.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45778899999999964 333 36789999999999999999999999999999999999999999988888888777
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
..| +++++++|++ ..++..+|.++...|++++|+..++
T Consensus 119 ~~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 119 EAF-----------------------------------------DSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665 4556666665 4556666666666666666666666
Q ss_pred cCCCCCCCCC
Q 009096 217 NMPKFEHYSP 226 (543)
Q Consensus 217 ~~~~~~~~~~ 226 (543)
++++.+|+++
T Consensus 157 ~al~~~P~~~ 166 (296)
T PRK11189 157 AFYQDDPNDP 166 (296)
T ss_pred HHHHhCCCCH
Confidence 6666666553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-20 Score=171.15 Aligned_cols=332 Identities=16% Similarity=0.075 Sum_probs=254.6
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
+....|+..+..++..+|.|.-.+.+...++...|+|++|++.-.+.++++|+.+..|..+|..++.+|+|++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 33445777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhC---------------------------------------------------CHHHHH
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLG---------------------------------------------------QVENAR 136 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g---------------------------------------------------~~~~A~ 136 (543)
.++.+|++...+..|+.++.... +...|.
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~ 175 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKAD 175 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHH
Confidence 99999999888888877762220 011111
Q ss_pred HHhcCC----------C-C--CCCh--------------HH------H----------------------------hHHH
Q 009096 137 HHLCFP----------G-H--HPDP--------------NE------L----------------------------LKLQ 155 (543)
Q Consensus 137 ~~~~~a----------~-~--~~~~--------------~~------~----------------------------~~~~ 155 (543)
..+..+ . . ...| .. . ..-.
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~ 255 (539)
T KOG0548|consen 176 GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELAT 255 (539)
T ss_pred HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhh
Confidence 111100 0 0 0000 00 0 0002
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCC--CCh
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS------PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPP 227 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 227 (543)
.+..+.+.+..+...|.+.+++....++++.+-... ......+|..|...++++.|+.+|.+++..... ...
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls 335 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS 335 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH
Confidence 233455677888999999999999888887754321 122333566888889999999999998765443 100
Q ss_pred hHH----H--------------HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 009096 228 SQV----K--------------FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289 (543)
Q Consensus 228 ~~~----~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~ 289 (543)
... . ....-..|..++..|+|..|+..|.++++.+|++...+ -++|.+|.
T Consensus 336 ~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY------------sNRAac~~ 403 (539)
T KOG0548|consen 336 KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY------------SNRAACYL 403 (539)
T ss_pred HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH------------HHHHHHHH
Confidence 000 0 00112338999999999999999999999999999875 35899999
Q ss_pred hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
.+|.+..|++..+.+++++|+....|...|.++..+.+|+.|++.|+++++++|++.++.-.+..|...+...+...+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988754444445555
Q ss_pred HH
Q 009096 370 EA 371 (543)
Q Consensus 370 ~~ 371 (543)
++
T Consensus 484 ~r 485 (539)
T KOG0548|consen 484 RR 485 (539)
T ss_pred Hh
Confidence 55
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-19 Score=170.79 Aligned_cols=299 Identities=13% Similarity=0.049 Sum_probs=231.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhH-HHHHHHcCCHHHHHHHHHHHHhcCCCChhHH-HHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNR-AATLTALGRLTEAVSDCEEAVRLDPGYNRAH-QRLAS 124 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~ 124 (543)
.....+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 345567888888899999999988887665533 34555555 5565999999999999999999999875443 45589
Q ss_pred HHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 009096 125 LYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK----- 198 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~----- 198 (543)
++...|++++|+..++++.+ .|+... .+...+..+...|+|++|+..+.+..+..+..........
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~--------al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPE--------VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887 444332 2455677788889999999999999887665433222111
Q ss_pred --HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 199 --AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 199 --a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
........+-+...+.++...+..|+++.....+ +..+...|+.++|...++++++..| ++....
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~------A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~------ 300 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAM------AEHLIECDDHDTAQQIILDGLKRQY-DERLVL------ 300 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHH------
Confidence 1122223334555566666666666676554444 9999999999999999999999554 444321
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.......++.+++++..++.++.+|+++..+..+|.++...+++++|.+.|+++++..|++. .+..++.++
T Consensus 301 --------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~ 371 (398)
T PRK10747 301 --------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADAL 371 (398)
T ss_pred --------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHH
Confidence 22233559999999999999999999999999999999999999999999999999999864 466899999
Q ss_pred HHccCHHHHHHHHHHHHhcC
Q 009096 357 EKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~ 376 (543)
.++|+.++|..+|++++.+.
T Consensus 372 ~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999998864
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=147.37 Aligned_cols=86 Identities=33% Similarity=0.532 Sum_probs=82.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 504 (543)
.++.++++|+++|||||+.+.|.+.+++.+|+++.|+++|+|+.+++++.++|.++||++++++|+.+.+++|.++++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~ 99 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELE 99 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 009096 505 DSANLA 510 (543)
Q Consensus 505 ~~~~~~ 510 (543)
+.|+++
T Consensus 100 ~~i~~~ 105 (106)
T KOG0907|consen 100 KKIAKH 105 (106)
T ss_pred HHHHhc
Confidence 998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-19 Score=184.59 Aligned_cols=404 Identities=13% Similarity=0.010 Sum_probs=258.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcC--Cc----------------------------------chhhHHhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMS--PE----------------------------------NAAYRSNRAA 90 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~----------------------------------~~~~~~~la~ 90 (543)
+...|..+...+.+.|++++|+..|+++++.. |+ +..++..+..
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~ 267 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHH
Confidence 44456666666666666666666666655432 11 1223344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhh
Q 009096 91 TLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAES 167 (543)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (543)
.|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|+++.+ .++.. .+......+
T Consensus 268 ~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~---------t~~~ll~a~ 335 (697)
T PLN03081 268 MYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF---------TFSIMIRIF 335 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHH
Confidence 5666666666666665542 33556666777777777777777777766543 22222 244555666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
.+.|++++|.+.+..+++.+......++..+...|.+.|++++|...|++..+. +. ..|..+...|...|+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~------~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NL------ISWNALIAGYGNHGR 406 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---Ce------eeHHHHHHHHHHcCC
Confidence 778888888888888888765555677788889999999999999999888652 22 234445778899999
Q ss_pred hHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--CChhHHhHHHHHHH
Q 009096 248 FENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS--YNSILYCNRAICWS 323 (543)
Q Consensus 248 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 323 (543)
.++|++.|++..+ ..|+..... .+-.++.+.|..++|.++|+...+..+ .+...|..+..+|.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~-------------~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFL-------------AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHH-------------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999875 456554432 245668889999999999998876432 23567888999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhc
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNN 403 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~ 403 (543)
+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.+++.|++......+..+....++-.+.....
T Consensus 474 r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 474 REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999999988764 2334 45678888899999999999999999999999998777666666555444332221111
Q ss_pred ccCCCCeEEeehhhhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhC------CCeEEEEEeCcC--------
Q 009096 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRY------PYVHFFKVDVEE-------- 467 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~------~~~~~~~~d~~~-------- 467 (543)
..+...-......- .-+.-.+. +-.|.+ ..++.+..+...++++..+. |+..++..|+++
T Consensus 552 ~~m~~~g~~k~~g~---s~i~~~~~-~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~ 627 (697)
T PLN03081 552 ETLKRKGLSMHPAC---TWIEVKKQ-DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627 (697)
T ss_pred HHHHHcCCccCCCe---eEEEECCe-EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHH
Confidence 11100000000000 00000111 112333 23445555555555554432 566666677663
Q ss_pred --cHHHHHHcCCCccc---EEEEEECCe
Q 009096 468 --SLAIAKSEGVRTVP---TFKIYKNGE 490 (543)
Q Consensus 468 --~~~~~~~~~v~~~P---t~~~~~~g~ 490 (543)
++.+|-.||+..+| +|.++||=+
T Consensus 628 ~hsekla~a~~l~~~~~~~~i~i~knlr 655 (697)
T PLN03081 628 YHSEKLAIAFGLINTSEWTPLQITQSHR 655 (697)
T ss_pred hccHHHHHHhhCccCCCCCeEEEecCCE
Confidence 35689999999888 688888844
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=148.53 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=74.7
Q ss_pred hhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 417 EKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 417 ~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+++.+. .+++++|+||++||++|+.|.|.+++++.++++ +.|++||+|++++++.+|+|.++||+++|+||+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 34455554 577999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEcCC
Q 009096 494 EMINP 498 (543)
Q Consensus 494 ~~~g~ 498 (543)
+..|.
T Consensus 83 ~~~G~ 87 (114)
T cd02954 83 IDLGT 87 (114)
T ss_pred EEcCC
Confidence 99883
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=146.49 Aligned_cols=92 Identities=16% Similarity=0.246 Sum_probs=82.7
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCc----HHHHHHcCCCcccEEEEEECC
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEES----LAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~----~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+.|.+.+..+++++|+||++||++|+.+.|.++++++++. .+.|+++|+|.+ ++++++|+|.++||+++|+||
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 456777878889999999999999999999999999998854 478999999976 689999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHH
Q 009096 490 EKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 490 ~~~~~~~g~-~~~~~~~~ 506 (543)
+.+.++.|. +.+++.++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88888765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=161.99 Aligned_cols=304 Identities=15% Similarity=0.042 Sum_probs=208.5
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+-+.|+..|..+-..|-.-.+..+....|.+-- +.-..|..-+..+.+.+.++=|...|..+++..|.....|...+
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 566777777777777777766666666665422 23456666777777777777777777777777777777777777
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
..-..-|..++-...|++++. .|.... .|+..+......|+...|...+.++++.+|++ ..+|+....+.
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~--------lwlM~ake~w~agdv~~ar~il~~af~~~pns-eeiwlaavKle 628 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEI--------LWLMYAKEKWKAGDVPAARVILDQAFEANPNS-EEIWLAAVKLE 628 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchh--------HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc-HHHHHHHHHHh
Confidence 776667777776677777666 333222 24445555566677777777777777777764 66666666677
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
....+++.|..+|.++....|.. ..|+-.+.+...+++.++|+.+++++++..|+....|.+
T Consensus 629 ~en~e~eraR~llakar~~sgTe-------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm----------- 690 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTE-------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM----------- 690 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcc-------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH-----------
Confidence 77777777777777776666554 233333666667777777777777777777777766533
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW 362 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 362 (543)
+|+++.++++.+.|.+.|...++..|....+|..++.+-.+.|+.-.|...++++.-.+|++...|...-..-.+.|+.
T Consensus 691 -lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 691 -LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred -HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 5777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCC
Q 009096 363 SEAVRDYEALRRELPG 378 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~ 378 (543)
+.|.....+|++-.|+
T Consensus 770 ~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 770 EQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7777777777766653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=173.10 Aligned_cols=321 Identities=14% Similarity=0.013 Sum_probs=217.5
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
+...++.+.+.+|.|+.+.+.++..|..+++.+.|....+++++.++ +++.+|..++.++...+++.+|+...+.++.-
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445566666777777777777777777777777777777777743 44667777777777777777777777777777
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.|+|.........+-...++.++|+..+...+. ...+............-..+.......+..+|+..+.++.
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls----- 617 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS----- 617 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-----
Confidence 777666666666666666777777666544432 1111110000011111111111111112222222222211
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCC-CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMP-KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
+.+-.+.....-... +.+.. ...|+.. .......|...+..+...++.++|..++.++-.++|.....
T Consensus 618 ---------~l~a~~~~~~~se~~-Lp~s~~~~~~~~~-~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 618 ---------SLVASQLKSAGSELK-LPSSTVLPGPDSL-WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred ---------HHHHhhhhhcccccc-cCcccccCCCCch-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 111111111111111 22221 1222322 22334578888999999999999999999999999887776
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH--HHHHHHhhCCCCH
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE--DCNVALRIQPNYT 346 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~ 346 (543)
+ +..|..+...|++.+|.+.|..++.++|+++.....+|.++.+.|+...|.. .+..+++++|.++
T Consensus 687 ~------------~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 687 Y------------YLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred H------------HHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 5 3479999999999999999999999999999999999999999999988888 9999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++|+.+|.++.+.|+.++|.++|..|+++.+.+|-
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999988774
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-21 Score=176.71 Aligned_cols=258 Identities=17% Similarity=0.070 Sum_probs=120.4
Q ss_pred cCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHH
Q 009096 77 MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154 (543)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 154 (543)
..|. ...+.+|.+++..|++++|++.+++.+.. .|+++..|..+|.+...++++++|+..|++++.
T Consensus 5 ~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~---------- 72 (280)
T PF13429_consen 5 FGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA---------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 4454 23346688888888888888888665443 477888888888888888888888888776654
Q ss_pred HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
.++.. +..+..++.+ ...+++++|+..+.+..+..++. ....
T Consensus 73 -------------------------------~~~~~-~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~~l~---- 114 (280)
T PF13429_consen 73 -------------------------------SDKAN-PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-RYLL---- 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------ccccc-cccccccccc-ccccccccccccccccccccccc-chhh----
Confidence 22221 3334445555 68899999999999988766543 2222
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcC--CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLD--YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
....++...++++++...++++.... +.++..+. .+|.++.+.|++++|+..|+++++.+|+++
T Consensus 115 --~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 115 --SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL------------ALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH------------HHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred --HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 22667889999999999999987654 45555543 379999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
.++..++.++...|+++++...++......|+++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+...
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999988877
Q ss_pred HHhhhh
Q 009096 393 LKKSRG 398 (543)
Q Consensus 393 l~~~~~ 398 (543)
.++...
T Consensus 261 ~g~~~~ 266 (280)
T PF13429_consen 261 AGRKDE 266 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 766544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-19 Score=177.69 Aligned_cols=238 Identities=12% Similarity=-0.030 Sum_probs=201.1
Q ss_pred hHHhHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 84 YRSNRAATLTAL---GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 84 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
.++..|..+... +++++|+..|+++++++|+++.+|..+|.++..++....
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-------------------------- 313 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-------------------------- 313 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC--------------------------
Confidence 355667655443 457899999999999999999999999998876543110
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
....+++++|+..++++++++|++ +.++..+|.++...|++++|+..|+++++++|++...+. .+|.
T Consensus 314 ------~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~------~lg~ 380 (553)
T PRK12370 314 ------FDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKY------YYGW 380 (553)
T ss_pred ------cccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH------HHHH
Confidence 113456788999999999999988 788899999999999999999999999999999966544 4499
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCChhHHhHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-SYNSILYCNRA 319 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 319 (543)
++...|++++|+..++++++++|.++..... ++.+++..|++++|+..+++++... |+++.++.++|
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~------------~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRAAAGIT------------KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhhHHH------------HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 9999999999999999999999998765322 3556777899999999999999875 78899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.++..+|++++|+..+.++....|.+..++..++..|...|+ +|...+++.++
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999885 67666666555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=173.39 Aligned_cols=288 Identities=13% Similarity=0.039 Sum_probs=230.5
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.|.+.+.+.....|.....+...|..+.++|+++.|..++.++.+..|++. .+....+.++...|++++|+..+++.++
T Consensus 102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~ 181 (409)
T TIGR00540 102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLE 181 (409)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355555566667777788888899999999999999999999999999875 4666679999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCC--CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHH--PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
..|+++.++..++.++...|++++|...+.+..+. .++........ ..+ ......+..+++...+.++....|
T Consensus 182 ~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~----~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 182 MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAE----IGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHH----HHHHHHHHHhcCHHHHHHHHHHCC
Confidence 99999999999999999999999999999888862 33332211111 111 111233444555667777887777
Q ss_pred C---CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 189 D---SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 189 ~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
. ..+.++..++..+...|++++|...++++++..|++...... ..........++.+.+++.++++++..|++
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~----~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP----LCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH----HHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 4 358899999999999999999999999999999998642211 111334455688899999999999999999
Q ss_pred H--HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 266 V--EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYG--EGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 266 ~--~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+ ... ..+|.++++.|+|++|.++|+ .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus 333 ~~~~ll------------~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 333 PKCCIN------------RALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hhHHHH------------HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 543 237999999999999999999 57788887655 559999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=162.41 Aligned_cols=210 Identities=12% Similarity=-0.036 Sum_probs=158.3
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL 239 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (543)
++.+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..|+++++++|++.. ++.++|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------a~~~lg 139 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------AYLNRG 139 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHH
Confidence 3444444445555555556667888888887 889999999999999999999999999999999865 455559
Q ss_pred HHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHH
Q 009096 240 MFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRA 319 (543)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 319 (543)
.++...|++++|+..|+++++.+|+++... .+ .......+++++|+..|.+++...+... |. .+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~------------~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~ 203 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRA-LW------------LYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WN 203 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HH------------HHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HH
Confidence 999999999999999999999999997421 11 2234457889999999988775543322 22 46
Q ss_pred HHHHHccCHHHH--HHHH----HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Q 009096 320 ICWSKMGLWENS--IEDC----NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP-GDNEVAESLHNAQVA 392 (543)
Q Consensus 320 ~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 392 (543)
.++..+|+...+ +..+ +...++.|+..++|+++|.++..+|++++|+.+|+++++++| +..+....+......
T Consensus 204 ~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 204 IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 666667776443 3222 233356677889999999999999999999999999999997 666666555544444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=157.03 Aligned_cols=266 Identities=16% Similarity=0.104 Sum_probs=211.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC---CC-------ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHH
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLD---PG-------YNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFE 158 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~ 158 (543)
.+++..++...|-......++++ |. +..--..+|.||.++|-+.+|.+.++.+++ .+.++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dT-------- 258 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDT-------- 258 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhH--------
Confidence 45556667766665555554432 11 122234578888888888888888877776 344332
Q ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 159 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+..++.+|.+..+.+.|+..+.+.++..|.+ ...+...+.++..++++++|.++|+.+++.+|.+.+....+
T Consensus 259 -fllLskvY~ridQP~~AL~~~~~gld~fP~~-VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci------ 330 (478)
T KOG1129|consen 259 -FLLLSKVYQRIDQPERALLVIGEGLDSFPFD-VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI------ 330 (478)
T ss_pred -HHHHHHHHHHhccHHHHHHHHhhhhhcCCch-hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee------
Confidence 4556667777778888888888888888876 56677789999999999999999999999999986654444
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC--C-ChhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS--Y-NSILY 315 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~ 315 (543)
|.-|+-.++.+-|+.+|++.+++.-.+++.+ .++|.+.+..++++-++..|++++.... + -+++|
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf------------~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELF------------CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW 398 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHH------------hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence 7778889999999999999999998888874 4579999999999999999999987643 2 36899
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
+|+|.+....||+..|..+|+-++..+|++.+++.++|.+-.+.|+.++|..++..|-...|+-.+..
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999988755544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=163.32 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=93.4
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+.++++.++-..++. ...||+|+||+|||++|+.+.|.+++++.+|.+ +.+++||||+.+.|+.+|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 455555555555553 356999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
++|++++-+.|. +.++|++||+++.+.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999 888999999999876
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=142.92 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCcc--cc--chhHhHHHHHhhC--CC-eEEEEEeCcCcHHHHHHcCCCccc
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEK--CE--EISPFVNLLCVRY--PY-VHFFKVDVEESLAIAKSEGVRTVP 481 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~--c~--~~~p~l~~l~~~~--~~-~~~~~~d~~~~~~~~~~~~v~~~P 481 (543)
+..++ .++|++.+ ++..+++++||++||++ |+ ++.|.+.++++++ ++ +.|++||+|++++++++|||+++|
T Consensus 11 v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 11 VIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred eeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 33444 46666655 55779999999999988 99 9999999999998 54 999999999999999999999999
Q ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++|+||+++. +.|. +++.|.++|++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999987 8898 9999999999764
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=159.79 Aligned_cols=280 Identities=18% Similarity=0.139 Sum_probs=238.7
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.|++.+..++.+.|.++..|...+..++..|+|++|.-..++.++++|.....+...+.|+..+++..+|...++
T Consensus 67 nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~----- 141 (486)
T KOG0550|consen 67 NALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK----- 141 (486)
T ss_pred HHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh-----
Confidence 366777789999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
+..++ ....|+..+++.+. ...+ +.....-+..+.++...+++++|...-...+++++.+
T Consensus 142 ---~~~~~-----------~~anal~~~~~~~~s~s~~-----pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 142 ---SKQAY-----------KAANALPTLEKLAPSHSRE-----PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred ---hhhhh-----------HHhhhhhhhhcccccccCC-----chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 11111 22344555555554 1111 2233445667788889999999999999999999887
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhH------HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ------VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
...++.+|.++....+.+.|+..|++++.++|+..... ..+..|-..|.-.++.|++.+|.+.|..+|.++|+
T Consensus 203 -~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 203 -AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred -hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 77788889999999999999999999999999985432 33456777799999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+......+ |.+++.+..++|+.++|+...+.+++++|....++...|.|+..+++|++|.+.|+++++...+
T Consensus 282 n~~~nakl--------Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 NKKTNAKL--------YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccchhHHH--------HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 87654433 4578999999999999999999999999999999999999999999999999999999998766
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-18 Score=159.38 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=235.4
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
.++.++..|.+++.+-..|..+...|+-++|..+...++..++.+...|.-+|.++....+|++|+++|+.|+.++|+|.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH
Confidence 44555667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC---CCC---
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG---VDS--- 190 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~--- 190 (543)
..|..++.+..++++++.....-.+.++ ..+..-..|+..+..+.-.|++..|....+...+.. |+.
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLq-------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQ-------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 7777777777777777776665544443 122223447777777888888888887777666554 221
Q ss_pred -CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 191 -SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 191 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
...........+...|.+++|++.+...-.. ....+......+.++..++++++|...|...+..+|++...+
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 1122333555666777777777776654322 222233344559999999999999999999999999999877
Q ss_pred HHHHhHHH-HHH-------HHH--------------HHHHHHhcCCHHHHHH----------------------------
Q 009096 270 SVLTNVKM-VVR-------ART--------------RGNNLFSSRRYSEACS---------------------------- 299 (543)
Q Consensus 270 ~~l~~~~~-~~~-------~~~--------------~g~~~~~~~~~~~A~~---------------------------- 299 (543)
..+..... ... ++. ++.....-.++.+.+.
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh
Confidence 66544321 000 000 0000000011111111
Q ss_pred -HHHHHh-------cc----C--------CCC--hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 300 -AYGEGL-------KY----D--------SYN--SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 300 -~~~~al-------~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
..++.+ .- + |.. .+.++.++.-+...|+++.|..+.+.|+...|.-++.+...|+++.
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k 416 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK 416 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 111111 10 1 111 2455668888999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
..|++++|..+++.+.++|-.|..+...-++-....+..
T Consensus 417 H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 417 HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 999999999999999999988887775555544444333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-18 Score=153.23 Aligned_cols=299 Identities=13% Similarity=0.058 Sum_probs=256.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHc--CCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTAL--GRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
|.-.+.-...+-.++++|+++.|++.++-.-+.+... ..+-.+|...++.+ .++..|..+...++..+..++.+..+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 3344555678889999999999999988766655433 34556676666664 47899999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
.|.+-+..|++++|.+.|++++.... ...+++++.+..+..+|+.++|+.+|-+.-.+--++ ..++..++.+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn-~evl~qiani 567 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-AEVLVQIANI 567 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 99999999999999999999986222 235678999999999999999999998876654444 7889999999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
|..+.+..+|++++.++..+-|+++.....+ |.+|-+.|+-.+|.+++-...+..|.+.+...+
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl------~dlydqegdksqafq~~ydsyryfp~nie~iew---------- 631 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKL------ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW---------- 631 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHH------HHHhhcccchhhhhhhhhhcccccCcchHHHHH----------
Confidence 9999999999999999999999998877666 999999999999999999999999999887543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|+.|.+.|+..-...|.+.+.+..+.++.-.+|-
T Consensus 632 --l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 632 --LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 577889999999999999999999999988888999999999999999999999999999999999999999887774
Q ss_pred HHHHHHHHH
Q 009096 362 WSEAVRDYE 370 (543)
Q Consensus 362 ~~~A~~~~~ 370 (543)
. +|.++-+
T Consensus 710 ~-d~key~~ 717 (840)
T KOG2003|consen 710 K-DAKEYAD 717 (840)
T ss_pred h-hHHHHHH
Confidence 3 3444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=143.45 Aligned_cols=211 Identities=17% Similarity=0.089 Sum_probs=185.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
-..+...+|..|++.|++..|...++++|+.+|++..+|..+|.+|...|+.+.|-+.|++|++++|++.+++++.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
+.+|++++|...|++++..|.-... ...+-+.+.+..+.|+.+.|...|+++++.+|+. +.....++..++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~-----s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~ 187 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEP-----SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAG 187 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCc-----chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcc
Confidence 9999999999999999984443321 3457888999999999999999999999999998 566777899999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
++-.|...+++.....+-.... +..-..+....|+-+.+..+=....+..|...+..
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~s------L~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAES------LLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred cchHHHHHHHHHHhcccccHHH------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999988777644332 22225677888999998888888888999887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=157.56 Aligned_cols=250 Identities=14% Similarity=0.056 Sum_probs=217.3
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKH 160 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~ 160 (543)
.+--..+|.||+.+|.+.+|.+.++.+++..| .++.+..|+.+|.+..+...|+..|.+.+. .|.. +..+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~--------VT~l 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD--------VTYL 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch--------hhhh
Confidence 34446789999999999999999999999876 578889999999999999999999988887 3322 2346
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
...+.++..++++++|+++|+.+++.+|.+ .++....|.-|+..++.+-|+.+|+++++..-.+++...++ |.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~n-vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni------gL 366 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPIN-VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI------GL 366 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCcc-ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH------HH
Confidence 778888999999999999999999999887 55566678889999999999999999999999988766666 99
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
+.+..++++-++..|++++....+...+...| +++|.+....|++..|..+|+-++..+|++.+++.|||.
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW---------YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTATQPGQAADVW---------YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhccCcchhhhhh---------hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 99999999999999999998776555544444 558999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+-.+.|+.++|..+++.+-...|+-.+..++++.+-
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999888888776543
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=141.18 Aligned_cols=93 Identities=24% Similarity=0.296 Sum_probs=83.6
Q ss_pred hhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH---HHHHHcCCCcccEEEEEECCeE
Q 009096 417 EKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL---AIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 417 ~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~---~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+.+.+.+. .+++++|+||++||++|+.+.|.+++++++++++.|+++|+|++. +++++|+|.++||+++|+||+.
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 45555553 378999999999999999999999999999988999999999874 8999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHh
Q 009096 492 LKEMINPSHQFLEDSANL 509 (543)
Q Consensus 492 ~~~~~g~~~~~~~~~~~~ 509 (543)
+.++.|..++++++.|..
T Consensus 84 v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 84 IHEEEGIGPDELIGDVLY 101 (103)
T ss_pred EEEEeCCCHHHHHHHHHh
Confidence 999999988999888764
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-20 Score=137.32 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=83.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+...|++.++.++.+++.||++| ||+|+.+.|.|++++++|++ +.|+++|++++++++.+|+|+++||+++|+||++
T Consensus 16 ~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~ 95 (111)
T cd02965 16 DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRY 95 (111)
T ss_pred ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEE
Confidence 34566677788999999999997 99999999999999999988 8899999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHH
Q 009096 492 LKEMINP-SHQFLED 505 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~ 505 (543)
+.+..|. +.+++..
T Consensus 96 v~~~~G~~~~~e~~~ 110 (111)
T cd02965 96 VGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEEeCccCHHHHhh
Confidence 9999998 8888753
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=139.76 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=89.2
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.+.+...+..+++++++||++||++|+.+.|.+++++.++++ +.|..+|+| .++++++|+|.++||+++|+||+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 456788888888899999999999999999999999999999963 789999999 77899999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhc
Q 009096 491 KLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~ 510 (543)
++.+..|.+++.+.++|+++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEEEecCChHHHHHHHhhC
Confidence 99999999999999999863
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=161.02 Aligned_cols=271 Identities=12% Similarity=0.014 Sum_probs=209.9
Q ss_pred HHHHHHH-hhHHHhcCCHHHHHHHHHHHHhcCCcchhhH-HhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 48 AEEVKRA-GNEMYRKGNFVEALKLYDKAISMSPENAAYR-SNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 48 ~~~~~~~-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+..++.+ +....+.|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+.+|+++.++..++.+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~ 196 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA 196 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4444444 5666999999999999999999999885443 4559999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
|...|++++|+..+.++.+ ..++.....+. ...+..+........+-+.....++..-...|++ +.+...++..+.
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~-~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~-~~~~~~~A~~l~ 274 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE-QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ-VALQVAMAEHLI 274 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC-HHHHHHHHHHHH
Confidence 9999999999988887776 22233222111 1112222222222334444444444443444444 788899999999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|+.++|...++++++..++. .... .......++.+++++..++.++.+|+++.....
T Consensus 275 ~~g~~~~A~~~L~~~l~~~~~~-~l~~--------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~------------ 333 (398)
T PRK10747 275 ECDDHDTAQQIILDGLKRQYDE-RLVL--------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST------------ 333 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCH-HHHH--------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH------------
Confidence 9999999999999999954433 2111 112335599999999999999999999987643
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+|.++...++|++|.+.|+++++..|++ ..+..++.++.++|+.++|..+|++++.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6999999999999999999999999985 446689999999999999999999998764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-17 Score=142.00 Aligned_cols=279 Identities=14% Similarity=0.025 Sum_probs=210.6
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 86 SNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
+..|.-+.-.++.++|+..|..+++.+|...+++..||.++...|..+.|+..-+..++.|+-..- ....+...+|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~---qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE---QRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHH
Confidence 344555556667777777777777777777777777777777777777777766666654444332 23445666777
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.|...|-++.|...|...... |.....+...+..+|....+|++|+..-++..+..+........ ..+..++..+...
T Consensus 116 Dym~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA-qfyCELAq~~~~~ 193 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA-QFYCELAQQALAS 193 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH-HHHHHHHHHHhhh
Confidence 777777777777777776654 45556777778888888888888888888888887776433221 2344457788888
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSK 324 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 324 (543)
.+.+.|...+.++++.+|++..+... +|.+....|+|+.|++.++.+++.+|+. +++.-.|..||.+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~------------lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASII------------LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhh------------hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 89999999999999999999877644 6999999999999999999999999987 5788889999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 325 MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+|+.++.+..+.++.+..++ +++-..++..-....=.+.|..++.+-+...|.-...
T Consensus 262 lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred hCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHH
Confidence 99999999999999998876 4556667777777777888888888888888864443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=139.13 Aligned_cols=211 Identities=17% Similarity=0.090 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
....+.+|..|...|++..|...++++++.+|+. ..+|..++.+|...|+.+.|.+.|+++++++|++.+...++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY---- 109 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY---- 109 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh----
Confidence 4456677777778888888888888888887776 66777777778888888888888888877777777766665
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
|..++.+|++++|...|++++. +|..+.....+ .++|.|..+.|+++.|.++|+++++.+|+.+....
T Consensus 110 --G~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~---------eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 110 --GAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTL---------ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred --hHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhh---------hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 6677777777777777777764 34333332222 23677777777777777777777777777777777
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.++..++..|+|-.|..++++...-.+-..+.+.....+....|+-+.|-++=.+.....|..++...
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 77777777777777777777777776666677766677777777777777777777777777766553
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-20 Score=144.52 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=90.9
Q ss_pred Eeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEE-EEE
Q 009096 412 EISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFK-IYK 487 (543)
Q Consensus 412 ~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~-~~~ 487 (543)
.+.+...+++.+ +.+++++++|+++||+||+.+.|.|+++++++++ +.|++||+|+++++++.|+|.+.||++ +|+
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 345667777777 3578999999999999999999999999999998 888999999999999999999887666 999
Q ss_pred CCe-EEEEEcC--------C-CHHHHHHHHHhcCCCCC
Q 009096 488 NGE-KLKEMIN--------P-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 488 ~g~-~~~~~~g--------~-~~~~~~~~~~~~~~~~~ 515 (543)
||+ .+++.+| . +++++.+.++.......
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 999 8999999 6 89999999998765443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-17 Score=157.66 Aligned_cols=345 Identities=17% Similarity=0.055 Sum_probs=275.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--PGYNRAHQRLA 123 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (543)
.++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.+|...|.-..|+...+..+... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4777888888889999999999999999998887888999999999999999999999999999998 77777766665
Q ss_pred H-HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh-----------hhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 124 S-LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES-----------RKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
. |+.+.+.+++++++-.+++......... .....+...|.+| .+.....+++..++++++.+|.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~--l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d- 477 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSH--LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD- 477 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhh--hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 5 4567799999999998887611111000 0111122222222 12234567889999999999988
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH--
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA-- 269 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 269 (543)
+.+.+.++.-|...++.+.|....+++++.++.+.. .+|..++.++...+++.+|+...+.++...|+|....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~-----~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA-----KAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 577777899999999999999999999999666533 3555568889999999999999999988887732110
Q ss_pred ----------------------HHHH----------hH------------------------------------------
Q 009096 270 ----------------------SVLT----------NV------------------------------------------ 275 (543)
Q Consensus 270 ----------------------~~l~----------~~------------------------------------------ 275 (543)
.+|. +.
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0011 00
Q ss_pred ---------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 276 ---------------KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 276 ---------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
....-+...+..+...++-++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..++.
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00001334677788888899999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVR--DYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|..++.+...++..++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 999999999999999999999888888 9999999999999999999999988876654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-18 Score=154.20 Aligned_cols=207 Identities=18% Similarity=0.109 Sum_probs=180.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..+..++.+|..++..|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
++...|++++|+..+.+++..+... .....+..++.++...|++++|...+.+++...|+. ...+..++.++..
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~ 181 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP-----QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-PESLLELAELYYL 181 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-hHHHHHHHHHHHH
Confidence 9999999999999999998632111 112346678899999999999999999999999886 6778889999999
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY 263 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 263 (543)
.|++++|+..+++++...|.++.... ..+.++...|+.++|..+.+.+....|
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLW------LGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999988766544332 348889999999999998887766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-17 Score=150.90 Aligned_cols=250 Identities=14% Similarity=-0.016 Sum_probs=187.0
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+...+++-.+-.++...+++++|+..+.++|+++|++..+|..++.++..+| ++++|+..+.++++.+|++..+|.
T Consensus 31 ~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~ 110 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH 110 (320)
T ss_pred eeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence 3345556666566666778899999999999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.++.++..+|+.. +++++..++++++.+|.+ .
T Consensus 111 ~R~~~l~~l~~~~---------------------------------------~~~el~~~~kal~~dpkN-y-------- 142 (320)
T PLN02789 111 HRRWLAEKLGPDA---------------------------------------ANKELEFTRKILSLDAKN-Y-------- 142 (320)
T ss_pred HHHHHHHHcCchh---------------------------------------hHHHHHHHHHHHHhCccc-H--------
Confidence 9998877665420 112333445555555544 2
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
.+|..++.++...|++++|++.+.++++.+|.+..+|..
T Consensus 143 --------------------------------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~--------- 181 (320)
T PLN02789 143 --------------------------------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ--------- 181 (320)
T ss_pred --------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH---------
Confidence 344555666666666777777777777777777666532
Q ss_pred HHHHHHHHHhc---CC----HHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 281 ARTRGNNLFSS---RR----YSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 281 ~~~~g~~~~~~---~~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++.++... |. .++++++..++|..+|++..+|..++.++.. +++..+|++.+.+++..+|+++.++
T Consensus 182 ---R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 182 ---RYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred ---HHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 34444333 22 3578888899999999999999999999988 5567889999999999999999999
Q ss_pred HHHHHHHHHcc------------------CHHHHHHHHHHHHhcCCCChHHH
Q 009096 350 LRRAVSNEKLG------------------RWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 350 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
-.++.+|.... ..++|.+.++..-+.+|--...|
T Consensus 259 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 259 SDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 99999998632 23567776666655555444444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=151.48 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=170.5
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...+..++..+...|++++|+..++++++.+|.. ...+..+|.++...|++++|+..++++++..|.+... +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~ 103 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV------LN 103 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------HH
Confidence 4557788888999999999999999999988876 6778888999999999999999999999988887543 33
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCC--CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDY--SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
..|.++...|++++|+..+++++...+ ..... +..+|.++...|++++|...+.++++.+|+++.+
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS------------LENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 448889999999999999999987532 22222 2347889999999999999999999999998899
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999998888888888899999999999999998887776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=170.96 Aligned_cols=400 Identities=13% Similarity=-0.020 Sum_probs=248.1
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--CC----------
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--PG---------- 114 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~---------- 114 (543)
+...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|++.|++..+.. |+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 445555555555555666666555555422 234455555555555555555555555543321 22
Q ss_pred ------------------------ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 115 ------------------------YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 115 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
+..++..+...|.+.|++++|.+.|+++.+. +.. .|..+...+...
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~v---------s~~~mi~~~~~~ 468 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI---------SWTSIIAGLRLN 468 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-Cee---------eHHHHHHHHHHC
Confidence 2345566677788888888888888776542 211 244445555666
Q ss_pred CCHHHHHHHHHHHHHcCCCC----------------------------------CHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAIGVDS----------------------------------SPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p~~----------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
|++++|+..|++.....+.+ ...+...+...|.+.|+.++|...|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 77777777776665432211 12223345578888899999999888
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
.. +.+. ..|..+...|...|+.++|++.|++..+ ..|+...... +-..+.+.|++
T Consensus 549 ~~----~~d~------~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~-------------ll~a~~~~g~v 605 (857)
T PLN03077 549 SH----EKDV------VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS-------------LLCACSRSGMV 605 (857)
T ss_pred hc----CCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH-------------HHHHHhhcChH
Confidence 86 2232 2455557789999999999999998875 4566655432 33457889999
Q ss_pred HHHHHHHHHHhccCC--CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDS--YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 295 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
++|.++|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ ...|..+-..+...|+.+.|....+++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999874432 23578889999999999999999999875 35555 667777777888889999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhhhhhhhcccCCCC-eEEeehhhhhhhccCCCCceeeeeeC--CCCccccchhHhHH
Q 009096 373 RRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGE-VEEISSLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVN 449 (543)
Q Consensus 373 l~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~ 449 (543)
++++|++......+..+....++-.+.......|... +..... - .-++-++. +-.|.+ ..++....+...++
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g-~---s~ie~~~~-~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG-C---SWVEVKGK-VHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC-c---cEEEECCE-EEEEecCCCCCcchHHHHHHHH
Confidence 9999999988887777665444332211111111000 000000 0 00000111 112222 23555566666666
Q ss_pred HHHhhC------CCeEEEEEeCcC----------cHHHHHHcCCCccc---EEEEEECCe
Q 009096 450 LLCVRY------PYVHFFKVDVEE----------SLAIAKSEGVRTVP---TFKIYKNGE 490 (543)
Q Consensus 450 ~l~~~~------~~~~~~~~d~~~----------~~~~~~~~~v~~~P---t~~~~~~g~ 490 (543)
++..+. |+..++. |.++ .+.+|-.||+.++| +|.++||=+
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr 817 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLY 817 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCE
Confidence 665543 4444433 4332 35689999999888 688888844
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=150.44 Aligned_cols=289 Identities=11% Similarity=0.001 Sum_probs=249.3
Q ss_pred cccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
..+.-|.|...+..+|.+++..|++++|+..|+++..++|.+....-..|..+...|+++.-...-...+........-|
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~w 303 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHW 303 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhh
Confidence 34566889999999999999999999999999999999999999999999999999999999888888888887788889
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
+--+..++...++..|+.+-+++++... ..+..++..|..+...++.++|+-.|+.++.+.|-. ...|..+.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r-L~~Y~GL~ 375 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR-LEIYRGLF 375 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh-HHHHHHHH
Confidence 9999999999999999999999997211 124568889999999999999999999999998866 78889999
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHH-HHH-HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL-MFN-ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
.+|+..|.+.+|.-.-+.+++..|.+......+ | .++ ..----++|.+.+++++.+.|....+-.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~------g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------- 442 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLF------GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------- 442 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh------cceeeccCchhHHHHHHHHHhhhccCCccHHHHH-------
Confidence 999999999999999999988888885433322 2 222 2223457899999999999999987753
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
.++..+...|+++.++.++++.+...|+ ...+..||.++...+.+++|++.|..|+.++|++..+.-.+-..
T Consensus 443 -----~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 443 -----LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred -----HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3688899999999999999999998887 67889999999999999999999999999999998776554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=161.62 Aligned_cols=249 Identities=18% Similarity=0.150 Sum_probs=169.7
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--- 111 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (543)
.+|.-......+|..|..+|+|+.|+..++.+++. .|.-......+|..|..++++++|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777777777777777776 4444455555777777777777777777777764
Q ss_pred -----CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 009096 112 -----DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI 186 (543)
Q Consensus 112 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 186 (543)
+|....++.+||.+|...|++++|..++++++ +.+++....
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------------~I~~~~~~~ 319 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------------EIYEKLLGA 319 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------------HHHHHhhcc
Confidence 23445567777777777777777777664432 223332222
Q ss_pred CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc-----
Q 009096 187 GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL----- 261 (543)
Q Consensus 187 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----- 261 (543)
.+......+..+ +.++..++++++|..++++++++
T Consensus 320 ~~~~v~~~l~~~----------------------------------------~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 320 SHPEVAAQLSEL----------------------------------------AAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred ChHHHHHHHHHH----------------------------------------HHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222222333333 44455555555555555555432
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------CCChhHHhHHHHHHHHccCHHHHHH
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD--------SYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
.++++...... .++|.+|...|+|++|.++|++|+++. +.....+.++|..|.+++++.+|..
T Consensus 360 g~~~~~~a~~~---------~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 360 GEDNVNLAKIY---------ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred cccchHHHHHH---------HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 23333333333 358999999999999999999999763 3335678899999999999999999
Q ss_pred HHHHHHhh-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 334 DCNVALRI-------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 334 ~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.|.+++.+ .|+-...+.+||.+|..+|++++|+++.++++.
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999876 234457789999999999999999999988874
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=138.27 Aligned_cols=91 Identities=20% Similarity=0.407 Sum_probs=85.7
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
|.+..+.+...+.+.+..++++++.||++||++|+.+.|.+++++++++++.|++||++++++++++|+|.++||+++|+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 55777888889999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCC
Q 009096 488 NGEKLKEMINP 498 (543)
Q Consensus 488 ~g~~~~~~~g~ 498 (543)
+|+++.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999998774
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-19 Score=136.98 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=84.0
Q ss_pred eEEeehhhhhhhc---cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHH-HHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA---ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIA-KSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~---i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~-~~~~v~~~Pt~~ 484 (543)
+.++++ ..|.++ +..++.++|+||++||++|+.+.|.++++++.+++ +.|++||++++..++ ++|+|.++||++
T Consensus 11 v~~l~~-~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 11 VLDFYK-GQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred eEEech-hhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEE
Confidence 444443 445543 57889999999999999999999999999999977 899999999999999 589999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHH
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
+|++|+...++.|. +.+.|..+
T Consensus 90 lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 90 LYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEECCccceEEeCCCCHHHHHhh
Confidence 99999988889898 99988875
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=148.90 Aligned_cols=109 Identities=28% Similarity=0.447 Sum_probs=98.7
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+...|+..+.. .+.++|+|++.|||||+.+.|.|+.++.+||+..|.+||+|+-+.++..+||..+||+++|.
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 4456677777777655 45999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcCCCCCCCC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 518 (543)
||+.++++.|+++.-|++.|.++.+.+...+
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~stsaa~~ 113 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYASTSAASS 113 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHhccCcccc
Confidence 9999999999999999999999987765554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=161.60 Aligned_cols=322 Identities=13% Similarity=0.006 Sum_probs=258.8
Q ss_pred cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhc
Q 009096 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (543)
+++...|...|-++++++|..+.++..+|.+|...-+...|.++|++|.+++|.+..++-..+..|....+++.|.....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 141 FPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
.+-+ ..+. ......|..+|..+.+.++..+|+..++.++..+|.+ ...|..+|.+|...|++..|++.|.++..
T Consensus 551 ~~~q-ka~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 551 RAAQ-KAPA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHhh-hchH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3332 1111 1223446668999999999999999999999999988 78899999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH----------------------------------
Q 009096 221 FEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV---------------------------------- 266 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------------------------- 266 (543)
++|.+....+.. +.+....|.|.+|+..+...+.......
T Consensus 625 LrP~s~y~~fk~------A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 625 LRPLSKYGRFKE------AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred cCcHhHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999986554444 6667777777777766655543221111
Q ss_pred ---------------HHHHHHHh--------------------H-H-----------------------------HHHHH
Q 009096 267 ---------------EIASVLTN--------------------V-K-----------------------------MVVRA 281 (543)
Q Consensus 267 ---------------~~~~~l~~--------------------~-~-----------------------------~~~~~ 281 (543)
-.|.++.. + . ....+
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 00000000 0 0 00004
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 282 RTRGNNLFS--------SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 282 ~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
+++|..|+. +.+-..|+.++.+++++..++...|..||.+ ...|++.-|..+|-+.+...|.+...|.++|
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccc
Confidence 566666655 2334579999999999999999999999998 6668999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 354 VSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
.++.+..+++.|...|.++..++|.|...|-........++.
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999888766666555553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-16 Score=166.57 Aligned_cols=296 Identities=11% Similarity=-0.050 Sum_probs=240.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD-PGYNRAHQRLASL 125 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 125 (543)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|.+.|++++|++.|++..+.. .-+...+..+...
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45567778899999999999999999764 4578899999999999999999999999997653 2245688899999
Q ss_pred HHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
+.+.|++++|...+..+++ ...++ ...+..+...|.+.|++++|...|++..+. ....|..+...|.+
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d-------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~ 403 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLD-------IVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGN 403 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCC-------eeehHHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHH
Confidence 9999999999999988876 21222 123556777888999999999999987542 24678899999999
Q ss_pred ccChhHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
.|+.++|++.|++..+.. |+. ..+......+...|+.++|.++|+.+.+..+-.+.... +.
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~-------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~----------y~ 466 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNH-------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH----------YA 466 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc----------hH
Confidence 999999999999987643 332 12333356788999999999999999754322222110 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW 362 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 362 (543)
.+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...|..++.+|.+.|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 3678899999999999999874 3344 3677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 009096 363 SEAVRDYEALRRE 375 (543)
Q Consensus 363 ~~A~~~~~~al~~ 375 (543)
++|.+.++...+.
T Consensus 545 ~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 AEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=134.80 Aligned_cols=97 Identities=28% Similarity=0.438 Sum_probs=90.4
Q ss_pred ehhhhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 414 SSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 414 ~~~~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
.+.+.|++.+.. +++++|.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|++|+.
T Consensus 4 lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 83 (103)
T PF00085_consen 4 LTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKE 83 (103)
T ss_dssp ESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEE
T ss_pred CCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcE
Confidence 355677777765 8999999999999999999999999999998 69999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHHhc
Q 009096 492 LKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~ 510 (543)
+.++.|. +.+.|.++|+++
T Consensus 84 ~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 84 VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEESSSSHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcC
Confidence 9999999 999999999874
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=162.71 Aligned_cols=257 Identities=16% Similarity=0.131 Sum_probs=191.6
Q ss_pred cccccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH
Q 009096 24 IVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS 103 (543)
Q Consensus 24 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 103 (543)
.++.+....|.-.++.+++.+|.++++|..+|......++=..||..++++++++|+|-+++..||.+|...|.-.+|++
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 33444455677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 009096 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAA 183 (543)
Q Consensus 104 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 183 (543)
++.+-+...|...... .+. ..+++..- -...+..
T Consensus 375 ~L~~Wi~~~p~y~~l~--~a~---~~~~~~~~-------~s~~~~~---------------------------------- 408 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLV--SAG---ENEDFENT-------KSFLDSS---------------------------------- 408 (579)
T ss_pred HHHHHHHhCccchhcc--ccC---ccccccCC-------cCCCCHH----------------------------------
Confidence 9999999887643210 000 00000000 0000111
Q ss_pred HHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC--CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc
Q 009096 184 IAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH--YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 184 l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
.+..+. +.|..+....| .+++.+..+ |.+|...|+|++|+.+|+.||..
T Consensus 409 ----------~l~~i~-------------~~fLeaa~~~~~~~DpdvQ~~L------GVLy~ls~efdraiDcf~~AL~v 459 (579)
T KOG1125|consen 409 ----------HLAHIQ-------------ELFLEAARQLPTKIDPDVQSGL------GVLYNLSGEFDRAVDCFEAALQV 459 (579)
T ss_pred ----------HHHHHH-------------HHHHHHHHhCCCCCChhHHhhh------HHHHhcchHHHHHHHHHHHHHhc
Confidence 111111 11111222223 334444444 78888888889999999999999
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.|++...|. .+|-.+....+.++|+..|++|+++.|....+++++|.+++.+|.|++|.++|-.||.+
T Consensus 460 ~Pnd~~lWN------------RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 460 KPNDYLLWN------------RLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred CCchHHHHH------------HhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999888763 47999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC----------CHHHHHHHHHHHHHccCHHHHHH
Q 009096 342 QPN----------YTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 342 ~p~----------~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
.+. +..+|-.|=.++..+++.+-+..
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 654 12466666677777777665444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=132.55 Aligned_cols=269 Identities=11% Similarity=0.060 Sum_probs=227.2
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHH
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-----NRAHQRLASLY 126 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 126 (543)
|-.|.-+.-..+.++|+..|..+++.+|...++...||..+...|..+.|+..-+..++ .|+. ..+...||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 55677888899999999999999999999999999999999999999999998776554 5654 35788999999
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHH
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS----SPQLVACKAEAH 202 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~a~~~ 202 (543)
+..|-++.|...|......++... .+.-.+..+|....+|++|++.-++..++.++. ....+..++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 999999999999998876444332 345566778889999999999999999998765 245577788888
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
....+.+.|+..+.++++.+|........+ |.++...|+|+.|++.++.+++.+|+..... +.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev-----------l~ 253 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIIL------GRVELAKGDYQKAVEALERVLEQNPEYLSEV-----------LE 253 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhh------hHHHHhccchHHHHHHHHHHHHhChHHHHHH-----------HH
Confidence 999999999999999999999996655444 9999999999999999999999999875432 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
.+-.+|.+.|+.++.+..+.++.+..+. +.+-..++..-....-.+.|.....+-+...|+--
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 3678999999999999999999998876 55566677777777778999999999999998743
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=134.36 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~ 501 (543)
.+++++|.||++||++|+.+.|.+++++++++ ++.|+++|++..+.+++++||.++||+++|++|+.+.+..|. +.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~ 102 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQ 102 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHH
Confidence 57899999999999999999999999999996 489999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHhc
Q 009096 502 FLEDSANLA 510 (543)
Q Consensus 502 ~~~~~~~~~ 510 (543)
++.++|+++
T Consensus 103 ~l~~~i~~~ 111 (111)
T cd02963 103 HVVDFVRKL 111 (111)
T ss_pred HHHHHHhcC
Confidence 999999864
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-16 Score=150.90 Aligned_cols=314 Identities=12% Similarity=-0.022 Sum_probs=228.5
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
+|+.+.++..+|..+...|++++|...+.++.+..|.+ .+..+..|.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68899999999999999999999999999999887755 456788899999999999999999999999999988777
Q ss_pred HHHHHHHHhCC----HHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 121 RLASLYFRLGQ----VENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 121 ~la~~~~~~g~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
. +..+...|+ ...+...+.... ..++.. .......+..+...|++++|+..++++++..|++ ...+.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~ 152 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVH 152 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccC-cCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHH
Confidence 5 555555544 444444444321 222221 2335567788899999999999999999999988 66788
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.+|.++...|++++|+..+++++...|.++.. ....+..+|.++...|++++|+..|++++...|...........
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~--~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 228 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSML--RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA-- 228 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcch--hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH--
Confidence 88999999999999999999999988764332 22345566999999999999999999998776632222111000
Q ss_pred HHHHHHHHHHHHHhcCC------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------
Q 009096 277 MVVRARTRGNNLFSSRR------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------ 344 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 344 (543)
..+...+...|. ++............ +.........+.++...|+.++|...++........
T Consensus 229 -----~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 302 (355)
T cd05804 229 -----ASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ 302 (355)
T ss_pred -----HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence 001222222332 22222221111111 112233346888899999999999999887664322
Q ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
........|.++...|++++|++.+..++.+.
T Consensus 303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=133.88 Aligned_cols=104 Identities=19% Similarity=0.334 Sum_probs=91.0
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
..+..+...+.....+..+++++++||++||++|+.+.|.++++++++++ +.|+.+|++..+.++++|+|.++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 34556655433334566688999999999999999999999999999965 89999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+++.+..|. +.++++.+|+..+
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999999998 9999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-15 Score=158.15 Aligned_cols=310 Identities=10% Similarity=-0.016 Sum_probs=173.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP-GYNRAHQRLAS 124 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 124 (543)
+...|..+-..+...|++++|...|+++.+... .+...+..+..+|.+.|+.++|.+.|+++.+... .+...|..+..
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455666666666677777777777777665432 2455666666777777777777777777665442 24566666777
Q ss_pred HHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHH----------------------------HHHHHHHHHhhhhcCCH
Q 009096 125 LYFRLGQVENARHHLCFPGH---HPDPNELLKLQS----------------------------FEKHLNRCAESRKIGDW 173 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 173 (543)
.|.+.|++++|+..|.++.. .|+...+..+.. ...+..+...+.+.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 77777777777777666544 222221100000 01122233334444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC--CCCChhHHHHHHHHHHHHHHHhhcChHHH
Q 009096 174 KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE--HYSPPSQVKFLVWLLKLMFNISELRFENA 251 (543)
Q Consensus 174 ~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 251 (543)
++|.+.|+++.+.+.......|..+...|.+.|++++|+..|.++.+.. |+. ..+..+...+.+.|++++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-------~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-------VFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhCCCHHHH
Confidence 4444444444444333333444444444444444444444444443321 110 1112223344445555555
Q ss_pred HHHHHHHhhcCCC-cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCChhHHhHHHHHHHHccCH
Q 009096 252 VSSAEKAGLLDYS-NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY--DSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 252 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 328 (543)
.+.++++.+.... +... +..+...|.+.|++++|++.|++..+. .| +...|..+...|.+.|++
T Consensus 669 ~~l~~eM~k~G~~pd~~t------------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVS------------YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHHHHHcCCCCCHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCH
Confidence 5555554433211 1111 233567777788888888888776543 34 356777788888888888
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 329 ENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 329 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
++|++.|++..... ..+...|..+...+.+.|++++|.+.+.+.++..
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 88888888766542 2235566666677888888888888888887754
|
|
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=129.91 Aligned_cols=86 Identities=14% Similarity=0.279 Sum_probs=76.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE---------E
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK---------E 494 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~ 494 (543)
.+++++++|+++||++|+.+.|.|++++.++++ +.|++||+|+.+++++.|+|.++||+++|+||+-+. .
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k 92 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTK 92 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcE
Confidence 588999999999999999999999999999999 999999999999999999999999999999997763 2
Q ss_pred EcCC--CHHHHHHHHHhc
Q 009096 495 MINP--SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~--~~~~~~~~~~~~ 510 (543)
+.+. +++++.+.|+..
T Consensus 93 ~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 93 FVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEcCchhHHHHHHHHH
Confidence 3333 778888888753
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=151.70 Aligned_cols=207 Identities=11% Similarity=-0.030 Sum_probs=183.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH-QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
+...+.+++|+..+.++++++|.+ ..+|..++.++..+| ++++++..++++++.+|++.. +|..++.++...
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~-ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq------aW~~R~~~l~~l 119 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN-YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ------IWHHRRWLAEKL 119 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH------HhHHHHHHHHHc
Confidence 346778999999999999999998 678889999999998 689999999999999999955 566668788888
Q ss_pred cCh--HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 246 LRF--ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 246 g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
|+. ++++.+++++++.+|++..+|. .+|.++...|+|++|++++.++|+.+|.+..+|+.++.++.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~------------~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWS------------HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHH------------HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 874 7889999999999999999974 37899999999999999999999999999999999999988
Q ss_pred Hc---cCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 324 KM---GLW----ENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 324 ~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
++ |.+ ++++.+..++|..+|++..+|..++.++.. +++..+|++.+.++++..|++..+...|..+...
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 76 333 578999999999999999999999999988 5667889999999999999999999888887764
|
|
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=131.45 Aligned_cols=83 Identities=20% Similarity=0.327 Sum_probs=78.9
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
++++++.||++||++|+.+.|.+++++..+++ +.|+++|++..+.++++|+|.++||+++|++|+++.++.|. +.++|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHH
Confidence 67999999999999999999999999999976 88999999999999999999999999999999999999998 99999
Q ss_pred HHHHH
Q 009096 504 EDSAN 508 (543)
Q Consensus 504 ~~~~~ 508 (543)
+++|+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 99875
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=134.18 Aligned_cols=92 Identities=17% Similarity=0.327 Sum_probs=84.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...|++.+..+++++|.||++||++|+.+.|.++++++++++ +.|+++|+++++.++++++|.++||+++|++|+.+.
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 3567777777778999999999999999999999999999976 899999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHH
Q 009096 494 EMINP-SHQFLEDS 506 (543)
Q Consensus 494 ~~~g~-~~~~~~~~ 506 (543)
++.|. +.+.|.++
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99998 88888765
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-15 Score=158.83 Aligned_cols=300 Identities=14% Similarity=0.045 Sum_probs=193.2
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL----DPGYNRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 121 (543)
...|..+...|.+.|++++|+..|.++.+. .| +...|..+...|.+.|++++|.+.|.++... .|+ ...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 344444444444444444444444444332 12 2334444444444444444444444444331 222 234444
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCC-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHH-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
+...|.+.|++++|.+.|+++.+. ..+. ...+..+...+.+.|++++|+..|++..+.+-......+..+..
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~-------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGT-------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 444444555555555554444431 0111 12355667788899999999999999998864445678888999
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 278 (543)
.+.+.|++++|.++++.+.+....... ..+..+...|.+.|++++|.+.|+++.. ..|+.. .|
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~-----~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv-ty--------- 722 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGT-----VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS-TM--------- 722 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HH---------
Confidence 999999999999999998875433221 2455567899999999999999999865 345432 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHH-H
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKY--DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ--PNYTKALLRR-A 353 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l-a 353 (543)
..+...|.+.|++++|+++|++.... .|+ ...|..+...+.+.|++++|...+.++++.. |+ ...+..+ +
T Consensus 723 ---N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIg 797 (1060)
T PLN03218 723 ---NALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITG 797 (1060)
T ss_pred ---HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 23677899999999999999988754 354 6778888899999999999999999998764 43 3333333 3
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 354 VSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
.+. +++++|....+..+..++.+
T Consensus 798 lc~---~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 798 LCL---RRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred HHH---HHHHHHhhhhhhhhhhhccc
Confidence 322 46888888777777666554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-15 Score=144.59 Aligned_cols=338 Identities=13% Similarity=-0.005 Sum_probs=263.3
Q ss_pred CCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 32 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.|.......++.++.+..-|..+|..+...++|++|+.+|+.|+.++|+|...|..++....++++++.....-.+.+++
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 36666777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCC-ChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP-DPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
.|..-..|...|..+...|++..|...++...+.. .+.........+..+.+.....+.|.+++|++.+.+--..--+.
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999988777632 33444556667777778888899999999988776543332222
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH-HHHHHHhhcCCCcH---
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV-SSAEKAGLLDYSNV--- 266 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~-~~~~~al~~~p~~~--- 266 (543)
.......+..+..++++++|...+...+..+|++......+.. ++..-.+.-+++ ..|...-+..|...
T Consensus 219 -la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 219 -LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK------ALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred -HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH------HHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 3445568999999999999999999999999999665554422 221222222333 23332222222111
Q ss_pred ---------------------------------HHHHHHHh-----------------------------------HHHH
Q 009096 267 ---------------------------------EIASVLTN-----------------------------------VKMV 278 (543)
Q Consensus 267 ---------------------------------~~~~~l~~-----------------------------------~~~~ 278 (543)
+...++.. ...+
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 00000000 0011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
-.++.++..+...|+++.|..+.+.|+...|.-++.+...|.++.+.|++++|...+.++-+++-.+.-....-|.-..+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 11455778888999999999999999999999999999999999999999999999999999986665555567888899
Q ss_pred ccCHHHHHHHHHHHHhcC
Q 009096 359 LGRWSEAVRDYEALRREL 376 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~ 376 (543)
.++.++|.+...+.-+-.
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 999999999877765543
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=131.61 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQF 502 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 502 (543)
.+++++|.||++||++|+.+.|.+++++++++++.|+.+|.+ ..+.++.+|+|.++||+++|++| ++.++.|. +.++
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~ 95 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDS 95 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHH
Confidence 578999999999999999999999999999999999999998 88999999999999999999999 88899998 9999
Q ss_pred HHHHH
Q 009096 503 LEDSA 507 (543)
Q Consensus 503 ~~~~~ 507 (543)
|.+||
T Consensus 96 l~~f~ 100 (100)
T cd02999 96 LAAFY 100 (100)
T ss_pred HHhhC
Confidence 98875
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-18 Score=137.77 Aligned_cols=97 Identities=19% Similarity=0.291 Sum_probs=89.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...+++.+..++++++.||++||++|+.+.|.|.+++.++.+ +.|+++|++++++++++|+|.++||+++|++|+++.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 4567777888889999999999999999999999999988864 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.++|+++|++++
T Consensus 121 ~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEcCCCCHHHHHHHHHHhC
Confidence 99998 9999999998753
|
|
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=139.34 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=87.5
Q ss_pred CCCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+++...|.+.+... .+++|+||++||++|+.+.|.|++++.+|++++|++||+++. .++.+|+|.++||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 46677777757777776443 489999999999999999999999999999999999999988 89999999999999
Q ss_pred EEEECCeEEEEEcCC--------CHHHHHHHHHh
Q 009096 484 KIYKNGEKLKEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--------~~~~~~~~~~~ 509 (543)
++|++|+++.+++|+ +.+.|+.+|.+
T Consensus 140 llyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 140 LVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999999998874 45666666654
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-18 Score=134.00 Aligned_cols=89 Identities=29% Similarity=0.587 Sum_probs=79.6
Q ss_pred CCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+++ +.|.+.+... .+++++||++||++|+.+.|.+++++.+++++.|+++|++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 44566666 6776666443 799999999999999999999999999999999999999999 999999999999999
Q ss_pred EEECCeEEEEEcCC
Q 009096 485 IYKNGEKLKEMINP 498 (543)
Q Consensus 485 ~~~~g~~~~~~~g~ 498 (543)
+|++|+++.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-18 Score=130.15 Aligned_cols=96 Identities=28% Similarity=0.548 Sum_probs=88.9
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+..+.+.+.+...+..++++++.||++||++|+.+.|.+++++++++++.|+.+|+++...++++|+|.++||+++|++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG 81 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC
Confidence 34566778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHH
Q 009096 490 EKLKEMINPSHQFLED 505 (543)
Q Consensus 490 ~~~~~~~g~~~~~~~~ 505 (543)
+++.++.|...++|++
T Consensus 82 ~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 82 SVVDTLLGANDEALKQ 97 (98)
T ss_pred eEEEEEeCCCHHHhhc
Confidence 9999999998888764
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=131.87 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eEE
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EKL 492 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 492 (543)
.+.|.+.+ ..+++++|.||++||++|+.+.|.++++++++.+ +.|+++|++++++++++++|.++||+++|++| +.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 45566654 4567999999999999999999999999999865 89999999999999999999999999999988 889
Q ss_pred EEEcCC-C-HHHHHHHH
Q 009096 493 KEMINP-S-HQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~-~~~~~~~~ 507 (543)
.++.|. + .++|.++|
T Consensus 88 ~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 88 HSYNGWHRDADSILEFI 104 (104)
T ss_pred eEccCCCCCHHHHHhhC
Confidence 999998 7 99988774
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=132.85 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=121.1
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
-...|+++++++|++.. .+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++
T Consensus 12 ~~~~~~~al~~~p~~~~---------------~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 76 (144)
T PRK15359 12 PEDILKQLLSVDPETVY---------------ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTT 76 (144)
T ss_pred HHHHHHHHHHcCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 34678999999998622 269999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
|+..|++++.++|+++.+++++|.++..+|++++|+..|++++++.|+++..+...+.+...+..
T Consensus 77 A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 77 AINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888777643
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=136.40 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=89.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCc--HHHHHHcCCCcccEEEEEE-CCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEES--LAIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~--~~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
..+.+++..+++++|.||++||++|+.+.|.+.++.+++.+ +.|+.||++.. ..++.+|+|.++||+++|+ +|+++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 45566777889999999999999999999999999999965 88888888754 5889999999999999995 89999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCCCCCcc
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVYKLPLV 520 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 520 (543)
.++.|. +.++|+++|++++....-+..+
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~~~~~~~~~ 119 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVAGEPLPYAN 119 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCCccc
Confidence 999999 8999999999987655333333
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=142.54 Aligned_cols=122 Identities=31% Similarity=0.606 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
..+..++..|+-+++.++|++|+..|.+||+++|.++..|.+++.+|.++|.++.|++.++.++.++|.+.++|.++|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
|..+|++++|++.|+++|+++|+++..+..|..+...+++.+
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999988886654
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=127.61 Aligned_cols=92 Identities=23% Similarity=0.454 Sum_probs=83.1
Q ss_pred hhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhh-CCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 417 EKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVR-YPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 417 ~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~-~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+++.+... +++++.||++||++|+.+.|.+++++.+ .+++.|+++|+++.++++.+|+|.++||+++|++|+++.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4555666544 8999999999999999999999999999 567999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHH
Q 009096 494 EMINPSHQFLEDSAN 508 (543)
Q Consensus 494 ~~~g~~~~~~~~~~~ 508 (543)
+..|.++++|.+.|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999999999988764
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=127.69 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=81.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----C---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----P---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.|++.+..+++++|.||++||++|+.+.|.+++++..+ + .+.|+++|++.++.++++|||.++||+++|+
T Consensus 7 ~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 7 TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 34677778888889999999999999999999999988764 2 3899999999999999999999999999999
Q ss_pred CCeE-EEEEcCC-CHHHHHHHH
Q 009096 488 NGEK-LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 488 ~g~~-~~~~~g~-~~~~~~~~~ 507 (543)
+|++ ..++.|. +.++|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 4677788 899888875
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-14 Score=154.09 Aligned_cols=309 Identities=13% Similarity=0.092 Sum_probs=214.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCc----------------------------------chhhHHhHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--SPE----------------------------------NAAYRSNRA 89 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la 89 (543)
.+...|..+...|.+.|++++|+..|.++... .|+ +...+..+.
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 35667888888888888888888888887653 343 334455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHh
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAE 166 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~ 166 (543)
..|.+.|++++|.+.|++... .+...|..+...|.+.|++++|+..|+++.+ .|+... +......
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t---------~~~ll~a 398 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT---------IASVLSA 398 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee---------HHHHHHH
Confidence 666666666666666665432 2445566666667777777777776665543 222221 2223345
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
+...|+++.|.+.+..+.+.+......++..+...|.+.|++++|.+.|++..+.+ .. .|..+...+...|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d---~v------s~~~mi~~~~~~g 469 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD---VI------SWTSIIAGLRLNN 469 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---ee------eHHHHHHHHHHCC
Confidence 56778888888888888887766667788889999999999999999999886532 22 3444477888999
Q ss_pred ChHHHHHHHHHHhhc-CCCcHHHHHHHHhHH------HHHH----------------HHHHHHHHHhcCCHHHHHHHHHH
Q 009096 247 RFENAVSSAEKAGLL-DYSNVEIASVLTNVK------MVVR----------------ARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 247 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~------~~~~----------------~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
+.++|+..|+++... .|+......++..+. .... ...+-..|.+.|++++|...|+.
T Consensus 470 ~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 470 RCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred CHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999998743 455444333332111 0010 11234678888999999999887
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI--QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-..+.+.|+.++|.++|+...+..+-.|
T Consensus 550 ~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 550 H----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred c----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 5 456788999999999999999999999988764 455 34455666778888999999999998885544433
|
|
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-17 Score=126.64 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=82.9
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE--EEc
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK--EMI 496 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~~ 496 (543)
+.+.+..+..+++.||++||++|+.+.|.+++++.+++.+.|..+|++++++++.+|+|.++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 334455677889999999999999999999999998877999999999999999999999999999999876554 677
Q ss_pred CC-CHHHHHHHHHhcCC
Q 009096 497 NP-SHQFLEDSANLAPS 512 (543)
Q Consensus 497 g~-~~~~~~~~~~~~~~ 512 (543)
|. +..++.++|+..+.
T Consensus 95 G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 95 GLPAGYEFASLIEDIVR 111 (113)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 98 89999999987654
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=124.88 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=80.3
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.+.|++.+.. .+++.||++||++|+.+.|.+++++..+. ++.|+++|+++++.++++|+|.++||++++++|+. .
T Consensus 8 ~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~ 84 (101)
T cd02994 8 DSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVF-R 84 (101)
T ss_pred hhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCE-E
Confidence 4566776643 37899999999999999999999998775 48999999999999999999999999999999985 7
Q ss_pred EEcCC-CHHHHHHHHHh
Q 009096 494 EMINP-SHQFLEDSANL 509 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~ 509 (543)
++.|. +.++|.++|++
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999999864
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-17 Score=130.79 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=77.5
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCc-----
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRT----- 479 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~----- 479 (543)
.+..++. +.|++.+. .+++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.+
T Consensus 29 ~v~~l~~-~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HIKYFTP-KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred ccEEcCH-HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 3444444 56777663 35689999999999999999999999999986 49999999999999999999998
Q ss_pred -ccEEEEEECCeEEEEEcCC
Q 009096 480 -VPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 480 -~Pt~~~~~~g~~~~~~~g~ 498 (543)
+||+++|++|+++.++.|+
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 108 QLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred CCCEEEEEECCEEEEEEecc
Confidence 9999999999999999985
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=121.85 Aligned_cols=86 Identities=23% Similarity=0.436 Sum_probs=80.4
Q ss_pred cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CH
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SH 500 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~ 500 (543)
...++++++.||++||+.|+.+.|.++++.+++++ +.+..+|+++.++++.+++|.++||+++|++|+++.++.|. +.
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~ 89 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK 89 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence 35678999999999999999999999999999965 99999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHH
Q 009096 501 QFLEDSAN 508 (543)
Q Consensus 501 ~~~~~~~~ 508 (543)
+++.++|+
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 99998874
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-13 Score=125.95 Aligned_cols=357 Identities=14% Similarity=0.052 Sum_probs=199.3
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
+.+...+.+...|.+.+++...-.++.+.++|++|+...++-..... +....+..+.|.++++..++|+..++ ..+
T Consensus 31 a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 31 AVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred HHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 44445555556666666666666666666666666633222111111 11112466666666666666666666 344
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChH-HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPN-ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 191 (543)
+.+.......|.+++++|+|++|.+.|+.+++...++ .......+.+ .+.. . ... ..+.....|..+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a---~~a~-------l-~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA---VAAA-------L-QVQ-LLQSVPEVPEDS 174 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHHh-------h-hHH-HHHhccCCCcch
Confidence 4455566666666666666666666666665511111 1000000000 0000 0 000 122222334545
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCC--------CCCCCChhHHHH-HHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPK--------FEHYSPPSQVKF-LVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
-+.+++.+.++...|+|.+|++.++++++ -+....+....+ .....++.++..+|+.++|...|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 66777788888888888888888887722 122212222222 123444777788888888888888888777
Q ss_pred CCcHHHHHHH-HhHHHHH------------------------------------HHHHH---------------------
Q 009096 263 YSNVEIASVL-TNVKMVV------------------------------------RARTR--------------------- 284 (543)
Q Consensus 263 p~~~~~~~~l-~~~~~~~------------------------------------~~~~~--------------------- 284 (543)
|.+....... +|+-.+. .+.+.
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 6655322211 1110000 00011
Q ss_pred -------------HHHHHhcCCHHHHHHHHHHHhccCCCC-hhHHhHHHHHHHHccCHHHHHHHHH--------HHHhhC
Q 009096 285 -------------GNNLFSSRRYSEACSAYGEGLKYDSYN-SILYCNRAICWSKMGLWENSIEDCN--------VALRIQ 342 (543)
Q Consensus 285 -------------g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~ 342 (543)
.....+...+.+|++.+....+.+|.. ..+...++.+...+|+++.|++.+. ...+..
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 111111224555666666666666665 5567777777777788877777777 222211
Q ss_pred --CC--------------------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 343 --PN--------------------------------------YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 343 --p~--------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
|. .-..+...+....+.|+-++|...+++.++.+|++.++
T Consensus 415 ~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~ 494 (652)
T KOG2376|consen 415 HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDL 494 (652)
T ss_pred cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHH
Confidence 11 11224455666677799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccc
Q 009096 383 AESLHNAQVALKKSRGEFVNNMK 405 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~~~~~~~~ 405 (543)
...+..+...+...+.....+..
T Consensus 495 l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 495 LVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhcCHHHHHHHhhcC
Confidence 99999888888777766665543
|
|
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=124.05 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=80.8
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
.+.|...+..+ ++++.||++||++|+.+.|.++++++++. ++.|+.+|++.+..++++|+|.++||+++|++|++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 35566766544 69999999999999999999999998874 48999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 009096 492 LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~ 507 (543)
+.++.|. +.++|.++|
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888888764
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-17 Score=125.79 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=81.6
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCcC----cHHHHHHcCCCcccEEEEEE-
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVEE----SLAIAKSEGVRTVPTFKIYK- 487 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~~----~~~~~~~~~v~~~Pt~~~~~- 487 (543)
+.+.+++..+++++|.||++||++|+.+.|.+ +++.+.+. ++.++.+|+++ ...++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 34566777889999999999999999999987 67877776 69999999987 67899999999999999998
Q ss_pred -CCeEEEEEcCC-CHHHHHHHHH
Q 009096 488 -NGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 488 -~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
+|+++.++.|+ +.++|.++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 89999999998 9999998874
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=148.69 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=224.0
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.|..+|..+...+++..|+..|+.++..+|++..+|..+|.+|...|+|..|++.|.++..++|.+.-+.+..+.+...+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 45557777777888888888999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHH
Q 009096 130 GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI-------GVDSSPQLVACKAEAH 202 (543)
Q Consensus 130 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~~~a~~~ 202 (543)
|+|.+|+..+...+..............+.++..+..+...|-+.+|...+++.++. ........|..++...
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 999999998877765221111122233444555555555566666666555555443 2111122222222211
Q ss_pred HH-----------------------ccCh---h---HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh--cChHHH
Q 009096 203 LK-----------------------LHQN---E---DADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE--LRFENA 251 (543)
Q Consensus 203 ~~-----------------------~~~~---~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--g~~~~A 251 (543)
.- ++.. + -+.+++-..+++... +.+|.++..-+.+....... .+...|
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 11 1111 0 122222222222211 23333332222222222222 233579
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
+.++.+++++..++...|.. +|.+ ...|++.-|..+|-+++..+|.....|.|+|.++.+..+++.|
T Consensus 803 i~c~KkaV~L~ann~~~Wna------------LGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNA------------LGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHH------------HHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 99999999999999998765 4665 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
...|.++..++|.+...|...+.+....|+.-++...|...-++...
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 99999999999999999999999999999999999999885555443
|
|
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=136.99 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=89.7
Q ss_pred eEEeehhhhhhhccC-----CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 410 VEEISSLEKFKAAIS-----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~-----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+..+ +.+.|++.+. .+++++|.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 4444 4556766653 257999999999999999999999999999976 89999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++|++|+++....|. +.+++.+++.+.+.
T Consensus 111 ~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 111 LLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999888897 99999999998754
|
|
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=130.29 Aligned_cols=100 Identities=22% Similarity=0.318 Sum_probs=83.8
Q ss_pred CCCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 407 SGEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
.|.+..++..++...+... +.+++|+||++||++|+.+.|.|++++.+|++++|++||++.. +..|+|.++||++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 3667777766555555544 3489999999999999999999999999999999999999864 6899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHh
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~ 509 (543)
+|+||+.+.+++|+ +.+.|+.+|.+
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999873 56777776654
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=134.29 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=84.1
Q ss_pred ehhhhhhhccCCC-CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSP-GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+.+.+..+ +.++++||++||++|+.+.|.+.+++++||++.|+.||.+ |+|.++||+++|+||+++
T Consensus 4 ~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 4 IKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 3456666776654 8899999999999999999999999999999999999987 999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHhcCCCC
Q 009096 493 KEMINPSHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~~~~~~~~~~~~~~~~~ 514 (543)
.|++|.++.++...|+++....
T Consensus 76 ~r~~G~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 76 NSLEGCNTSTLVSFIRGWAQKG 97 (204)
T ss_pred eeeeCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999887653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=133.95 Aligned_cols=193 Identities=15% Similarity=0.017 Sum_probs=145.2
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR- 117 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 117 (543)
+..+..++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 55677899999999999999999999999999999999875 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHh--------CCHHHHHHHhcCCCC-CCChHHH-hHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 118 --AHQRLASLYFRL--------GQVENARHHLCFPGH-HPDPNEL-LKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 118 --~~~~la~~~~~~--------g~~~~A~~~~~~a~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
+++.+|.++... |++++|+..|++++. .|+.... .....+ +... ..+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~------~~~~--------------~~~- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM------DYLR--------------NRL- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH------HHHH--------------HHH-
Confidence 799999999887 889999999999887 4433221 111000 0000 000
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
......+|..+...|++.+|+..+++++...|+.+.. ..+++.+|.++..+|++++|..+++......|+
T Consensus 166 ------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 166 ------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1122345777777788888888777777777765322 234445577888888888888888777766653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=120.11 Aligned_cols=94 Identities=29% Similarity=0.498 Sum_probs=84.5
Q ss_pred hhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 417 EKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 417 ~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
+.+.+.+.. ++++++.||++||++|+.+.|.+.++.+++++ +.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 344454444 56999999999999999999999999989875 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9998 889999999875
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-16 Score=122.48 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=79.1
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----------HHHHHcC----CC
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----------AIAKSEG----VR 478 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----------~~~~~~~----v~ 478 (543)
.+.+.+.+.+.+++.++++|+++|||+|+.+.|.|+++.++ .++.|+.+|++.++ ++.+.|+ |.
T Consensus 11 it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 11 TTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred cCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 34566778888888999999999999999999999999988 55788999988542 4556665 55
Q ss_pred cccEEEEEECCeEEEEEcCC--CHHHHHHHHH
Q 009096 479 TVPTFKIYKNGEKLKEMINP--SHQFLEDSAN 508 (543)
Q Consensus 479 ~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~~ 508 (543)
++||+++|+||+++.+..|. +.++|++++.
T Consensus 90 ~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 69999999999999999994 7999998864
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-15 Score=133.29 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
.....++.+|..+...|++++|+..+++++...|.++.. ..+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA---EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 346778888999999999999999999999988887532 22455669999999999999999999999999888653
Q ss_pred HHHHhHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhccCCCChhHH-----------------hHHHHHHHH
Q 009096 270 SVLTNVKMVVRARTRGNNLFSS--------RRYSEACSAYGEGLKYDSYNSILY-----------------CNRAICWSK 324 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~ 324 (543)
..+ +.+|.++... |++++|++.|++++..+|++..++ ..+|.+|..
T Consensus 108 ~a~---------~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 178 (235)
T TIGR03302 108 YAY---------YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK 178 (235)
T ss_pred HHH---------HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3367777765 889999999999999999985432 467889999
Q ss_pred ccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 325 MGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.|++.+|+..|++++...|+. +++++.+|.++..+|++++|..+++......|+
T Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 179 RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999997764 589999999999999999999999988777663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.4e-16 Score=120.11 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=86.2
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.|.+.+..++++++.||++||++|+.+.|.+++++..+. ++.|+.+|++++..++++|+|.++||+++|++|+.+
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcc
Confidence 35566777778899999999999999999999999998886 499999999999999999999999999999988777
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.++|..+|++++
T Consensus 83 ~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 83 VDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred eeecCCCCHHHHHHHHHhcC
Confidence 888898 9999999998753
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-16 Score=121.65 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=80.1
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC--cHHHHHHcCCCcccEEEEEECCe-
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNGE- 490 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g~- 490 (543)
...+.+.+ ..++++++.||++||++|+.+.|.++++++++.+ +.|+.+|++. ++.++.+|+|.++||+++|++|+
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 34555655 4466799999999999999999999999999876 8999999998 88999999999999999999886
Q ss_pred ----EEEEEcCC-CHHHHHHHHH
Q 009096 491 ----KLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 491 ----~~~~~~g~-~~~~~~~~~~ 508 (543)
....+.|. +.+++.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 45667788 9999998874
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=135.68 Aligned_cols=325 Identities=11% Similarity=0.011 Sum_probs=215.5
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC------CCChhH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRLD------PGYNRA 118 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~ 118 (543)
-.+-..|.-+++.|++...+.+|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+.+. -..+.+
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 345567888999999999999999999987766 4678899999999999999999865443332 234566
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
--+||..+..+|.|++|+.+..+-+. .....-..+....++++++.+|...|+.-....--++ . ....++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd-~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~--g---~f~~ev---- 167 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLD-FARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK--G---AFNAEV---- 167 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhH-HHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc--c---cccHHH----
Confidence 77899999999999999988765543 0001112233344555555555544432111000000 0 000000
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
...++.|.++|..-+++.....+....-.++-++|..|+-+|+|+.|+..-+.-+.+..+..+-.. .-
T Consensus 168 ------~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa------eR 235 (639)
T KOG1130|consen 168 ------TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA------ER 235 (639)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH------HH
Confidence 011233444444444433333333333344555588999999999999988877766544332111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC------CCH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP------NYT 346 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~ 346 (543)
.++.++|+++.-+|+++.|+++|++.+.+. ...+...+.||..|.-+.++++|+.++++-+.+.. ...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 123468999999999999999999887542 22367789999999999999999999999877632 345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----C-ChHHHHHHHHHHHHHHh
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELP-----G-DNEVAESLHNAQVALKK 395 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~l~~~~~~l~~ 395 (543)
.+++.+|.++-.+|..++|+.+.++.+++.- . ...+..++......++.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 7889999999999999999999988887632 2 23355556666555544
|
|
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.65 E-value=9e-16 Score=119.66 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=82.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--C-eEEEEEeCcC--cHHHHHHcCCCcccEEEEEECCe
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--Y-VHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~-~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
...+...+..++++++.||++||++|+.+.|.+.++++.++ + +.|+.+|++. +..++.+++|+++||+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 34677777778899999999999999999999999998875 3 8899999998 89999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 009096 491 KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~ 507 (543)
.+.++.|. +.+++.++|
T Consensus 87 ~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 87 FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred eeEEeCCCCCHHHHHhhC
Confidence 99999998 999888764
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=119.28 Aligned_cols=92 Identities=25% Similarity=0.316 Sum_probs=79.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|+++ ...+++++.||++||++|+.+.|.+++++.++. ++.+..+|++..+.++++|+|.++||+++|++|. .
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 445554 456799999999999999999999999998873 3889999999999999999999999999998774 5
Q ss_pred EEEcCC-CHHHHHHHHHhc
Q 009096 493 KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~ 510 (543)
.++.|. +.+++.+++++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 668888 999999999864
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-13 Score=131.72 Aligned_cols=306 Identities=16% Similarity=0.081 Sum_probs=220.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+.+.++..+.++...|++++|++.+.+....-++....+-.+|.++..+|++++|...|+..++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 45778889999999999999999999988888888999999999999999999999999999999999999999998887
Q ss_pred HHhC-----CHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHH
Q 009096 127 FRLG-----QVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTV-LRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 127 ~~~g-----~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
.... +.+.-...|++... -|..... . .+...+..-..+... ..++...+..+ .|.++..+-
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~---~------rl~L~~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk 150 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP---R------RLPLDFLEGDEFKERLDEYLRPQLRKG---VPSLFSNLK 150 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch---h------HhhcccCCHHHHHHHHHHHHHHHHhcC---CchHHHHHH
Confidence 4433 34444555554432 1111100 0 000111111233332 23334444443 244455544
Q ss_pred HHHHHccChhHHHHHhh---cCCCC----CC----CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 200 EAHLKLHQNEDADSCLS---NMPKF----EH----YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~---~~~~~----~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
.+|.......-...++. ..++. .+ ....+...+.+++.+++.|...|++++|++++++++...|..++.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 44443322221112221 11111 11 112333445677888999999999999999999999999999988
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC--C-
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN--Y- 345 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~- 345 (543)
+. ..|.++.+.|++.+|.+.++.+-.+++.|-.+-...+..+++.|+.++|.+.+..-...+-+ .
T Consensus 231 y~------------~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 231 YM------------TKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred HH------------HHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 64 37999999999999999999999999999999999999999999999999999887665421 1
Q ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 346 ------TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 346 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.......|.+|.+.|++..|++.|..+.+..
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1223567999999999999999999888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=118.63 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=79.6
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eEE
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EKL 492 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~ 492 (543)
...+.+.+ ..+.++++.||++||++|+.+.|.+.++++++++ +.|+.+|+++++.++++|+|.++||+++|++| +..
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 34555555 4456699999999999999999999999999865 99999999999999999999999999999998 555
Q ss_pred EEEcCC-CHHHHHHHH
Q 009096 493 KEMINP-SHQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~ 507 (543)
..+.|. +.++|.+|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 667787 999998876
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=122.38 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=113.6
Q ss_pred HHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc
Q 009096 212 DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS 291 (543)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~ 291 (543)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++ ..+|.++...
T Consensus 13 ~~~~~~al~~~p~~---------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------------~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSVDPET---------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH------------IALAGTWMML 71 (144)
T ss_pred HHHHHHHHHcCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------------HHHHHHHHHH
Confidence 35667777777764 22348899999999999999999999999999886 3479999999
Q ss_pred CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 292 RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 292 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+.++|.+...+
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9e-14 Score=134.69 Aligned_cols=239 Identities=22% Similarity=0.172 Sum_probs=150.2
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCC-ChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC--
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP-DPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG-- 187 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-- 187 (543)
..|.-..+...++..|...|+|++|+..++++++.. +......+.........|..|...+++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345544444445555555555555555555554410 00000111111222245666666666666666666666552
Q ss_pred ---CCC--CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 188 ---VDS--SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 188 ---p~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
+++ ...++.+++ .+|...|++++|..++++++++.
T Consensus 274 ~~G~~h~~va~~l~nLa----------------------------------------~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLA----------------------------------------VLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred hcCCCCHHHHHHHHHHH----------------------------------------HHHhccCChHHHHHHHHHHHHHH
Confidence 111 123344444 44455555555555555544332
Q ss_pred -----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------CCChhHHhHHHHHHHHccCHH
Q 009096 263 -----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD--------SYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 263 -----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~ 329 (543)
...+.+...+ .+++.++..++++++|+.++++++++. |.-+..+.++|.+|..+|+++
T Consensus 314 ~~~~~~~~~~v~~~l---------~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQL---------SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHhhccChHHHHHHH---------HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 3334443333 458999999999999999999998762 233678999999999999999
Q ss_pred HHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCChH---HHHHHHHHHHHHH
Q 009096 330 NSIEDCNVALRIQ--------PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE----LPGDNE---VAESLHNAQVALK 394 (543)
Q Consensus 330 ~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~l~ 394 (543)
+|.++|++++.+. +.....+.++|..+.+++++.+|.+.|..+..+ .|+++. ...+|..++..++
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 9999999999874 233467889999999999999999999998876 455544 4556666666666
Q ss_pred hhhh
Q 009096 395 KSRG 398 (543)
Q Consensus 395 ~~~~ 398 (543)
+...
T Consensus 465 ~~e~ 468 (508)
T KOG1840|consen 465 NYEA 468 (508)
T ss_pred cHHH
Confidence 5544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=124.95 Aligned_cols=130 Identities=17% Similarity=0.125 Sum_probs=120.0
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH-H
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW-S 323 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 323 (543)
.++.++++..++++++.+|++...|. .+|.++...|++++|+..|+++++++|+++.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~------------~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWA------------LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999874 4799999999999999999999999999999999999975 6
Q ss_pred HccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 324 KMGL--WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 324 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
..|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+|++++++.|.+.+-...+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7787 59999999999999999999999999999999999999999999999999876655544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=117.96 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=118.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI 332 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 332 (543)
+.|++++..+|++.... ..+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQI------------YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHH------------HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999987664 347999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 333 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++.........+...+
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887776665554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=140.49 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=44.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR---ELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~l 393 (543)
+=.+|...++|++++..++.+++++|.|..+...++.||. +.|.. ...|+.+++ +.-....+...+..-...+
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 4467777788888888888888888888888888888886 33332 333444433 3333344444444443333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-14 Score=112.35 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
++.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++..|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+.+.|.+.|+.++...-.+++-.....++...+.
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999998655555544555555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-11 Score=113.41 Aligned_cols=354 Identities=12% Similarity=0.023 Sum_probs=248.5
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (543)
+..+..+..+...|...|.--..++++..|...|++||..+..+...|...+.+-++..+...|...+.+|+.+-|.-..
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq 142 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH
Confidence 33445556677788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHH------------------------HHHHHHHHhhhhcCC
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSF------------------------EKHLNRCAESRKIGD 172 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 172 (543)
.|+....+-..+|+...|...|++-+. .|+...+...... ..++..+..-.+.|+
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999888 7777666443322 234445555567788
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh--hHH------------------
Q 009096 173 WKTVLRETDAAIAIGVDSS--PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP--SQV------------------ 230 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~------------------ 230 (543)
..-|...|.++++.-.++. ..++...|..-..++.++.|..+|+-++..-|.+.. ...
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 8888888888877644331 122333344444555666666666655555444311 000
Q ss_pred ------------------HHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH---HH
Q 009096 231 ------------------KFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN---LF 289 (543)
Q Consensus 231 ------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~---~~ 289 (543)
.+.+|+..-.+....|+.+.-.+.|++|+...|....-.. +.. .+ +.-+-.+ -.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~-W~R--YI--YLWinYalyeEl 377 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY-WRR--YI--YLWINYALYEEL 377 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH-HHH--HH--HHHHHHHHHHHH
Confidence 0112222244555567777777888888766665332111 100 00 0111122 24
Q ss_pred hcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
...+.+.+.+.|+.++++-|+. +.+|...|....++.+...|.+.+-.|+-..|.+ ..+-..-.+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 5678888899999999988865 5677777777888888888888888888888774 3444455566677888888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 366 VRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 366 ~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
...|++.++..|.+-.+|...+.....++...
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH
Confidence 88888888888888888877777777665443
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=141.73 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=95.8
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.|...|..+..++|.||||||++|+.+.|.+++.+..+ +.+.+++||++++..+|.+|+|+++||+.+|+|
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 4566889999999999999999999999999999999998877 359999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
|+....+.|. ..+.|..|+++..+|+...-
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l 139 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQSGPASKTL 139 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhccCCCceec
Confidence 9987778888 99999999999888765443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-12 Score=116.47 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
+....+|..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.+||.|++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4567889999999988887654433 566778999999999999999999988877777889999999999999999999
Q ss_pred HHhcCCCCCCChH--------------HHhHH-----HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 137 HHLCFPGHHPDPN--------------ELLKL-----QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 137 ~~~~~a~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
..-.++-+.|-.. .+... ...+..+.++...+..-.|++|+..|.+++..+|+. ..+-..
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVY 190 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHH
Confidence 9888776522111 11100 122345667777788889999999999999998876 445556
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCCh
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPP 227 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 227 (543)
++.||.++.-++-+.+.+.-.++..|+++-
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 799999999999888888888887777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-11 Score=111.16 Aligned_cols=296 Identities=16% Similarity=0.086 Sum_probs=203.5
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG-YNRAHQRLASLYFR 128 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 128 (543)
.....|..-+..|+|.+|.....+.-+..+.-..++..-+.+--.+|+++.|-.++.++-+..++ .......++.+...
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34445666667788888888888876666655566666677777788888888888888877443 34556677778888
Q ss_pred hCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 009096 129 LGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH----L 203 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~----~ 203 (543)
.|+++.|.....++.. .|.+... ......+|...|+|.+....+.+.-+..--.+++.-...-.++ .
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~v--------lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEV--------LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHH--------HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 8888888877777766 3333321 3334456677778887777777766654333233222111111 1
Q ss_pred HccChhHHH---HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 204 KLHQNEDAD---SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 204 ~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
+..+-..+. .+.+..-..-..++.....+ +.-+...|+.++|.+..+.+++..-+..-..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~------a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----------- 300 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAY------AERLIRLGDHDEAQEIIEDALKRQWDPRLCR----------- 300 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHH------HHHHHHcCChHHHHHHHHHHHHhccChhHHH-----------
Confidence 111111111 23333322222233322222 7778889999999999999998776655221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
-.-...-++...=++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|
T Consensus 301 ----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g 375 (400)
T COG3071 301 ----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLG 375 (400)
T ss_pred ----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcC
Confidence 112456788888999999999999999999999999999999999999999999999876 566888999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 009096 361 RWSEAVRDYEALRRE 375 (543)
Q Consensus 361 ~~~~A~~~~~~al~~ 375 (543)
+..+|.+.++.++.+
T Consensus 376 ~~~~A~~~r~e~L~~ 390 (400)
T COG3071 376 EPEEAEQVRREALLL 390 (400)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999998854
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=110.23 Aligned_cols=90 Identities=33% Similarity=0.598 Sum_probs=82.1
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~ 498 (543)
+...+...+++++.||++||++|+.+.|.++++..+.+++.|+.+|++....++.+|+|.++||++++.+|+.+..+.|.
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 44555566899999999999999999999999998877899999999999999999999999999999999999999998
Q ss_pred -CHHHHHHHHH
Q 009096 499 -SHQFLEDSAN 508 (543)
Q Consensus 499 -~~~~~~~~~~ 508 (543)
+.++|.++|+
T Consensus 83 ~~~~~l~~~i~ 93 (93)
T cd02947 83 DPKEELEEFLE 93 (93)
T ss_pred CCHHHHHHHhC
Confidence 8899998874
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-15 Score=118.56 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=82.4
Q ss_pred hhhhhccCCC-CceeeeeeCCCCccccchhHhHH---HHHhhCC-CeEEEEEeCcCc-------------HHHHHHcCCC
Q 009096 417 EKFKAAISSP-GVSLVHFKEASSEKCEEISPFVN---LLCVRYP-YVHFFKVDVEES-------------LAIAKSEGVR 478 (543)
Q Consensus 417 ~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~---~l~~~~~-~~~~~~~d~~~~-------------~~~~~~~~v~ 478 (543)
+.+.++...+ ++++|.||++||++|+.+.|.+. .+...+. ++.++.+|++.. ..++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3445566667 89999999999999999999774 5555553 488999999864 6899999999
Q ss_pred cccEEEEEEC--CeEEEEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 479 TVPTFKIYKN--GEKLKEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 479 ~~Pt~~~~~~--g~~~~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
++||+++|.+ |+++.++.|+ +.+++..+|+...+..+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~~ 123 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKAY 123 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhhh
Confidence 9999999984 6999999998 99999999998876544
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=111.09 Aligned_cols=206 Identities=17% Similarity=0.024 Sum_probs=169.9
Q ss_pred CCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAIGV-----DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
.+.++.++.....+...+ ++...++-....+....|+.+-|..++++.....|.+....... |..+...
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk------am~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK------AMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH------HHHHHHh
Confidence 344555555554443321 22245556677788899999999999999988888886543333 8889999
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+++|+..++-+|.+..++. ..-.+...+|+--+|++.+.+-++..+.|.++|..++.+|...
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~K------------RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRK------------RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHH------------HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 9999999999999999999987753 2344566778888999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG---RWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
|+|++|.-++++.+-++|.++..+..+|.+++-+| +++-|.++|.++++++|.+-..+..+..+...+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877 6788999999999999988888877777666665
|
|
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-15 Score=113.88 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=82.5
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-eE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-EK 491 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~~ 491 (543)
...+.+.+..++++++.||++||++|+.+.|.+.++++.+ .++.|+.+|++++..++++|+|.++||+++|.+| +.
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKE 84 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcc
Confidence 3567777777779999999999999999999999999988 4599999999999999999999999999999977 88
Q ss_pred EEEEcCC-CHHHHHHHH
Q 009096 492 LKEMINP-SHQFLEDSA 507 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~ 507 (543)
+.++.|. +.+++.+++
T Consensus 85 ~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 85 PVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccCCCCcCHHHHHhhC
Confidence 8888888 888887764
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=125.39 Aligned_cols=277 Identities=13% Similarity=-0.077 Sum_probs=195.2
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH----hcCCCChhHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV----RLDPGYNRAHQR 121 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~ 121 (543)
...+..+..|..+...|++++|+..++++++.+|++..++.. +..+...|++..+.....+++ ..+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 456678889999999999999999999999999999887776 666666655544444444444 456777778888
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS---PQLVAC 197 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~ 197 (543)
+|.++...|++++|+..+++++. .|+. ...+..++.++...|++++|+..+.+++...|... ...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 99999999999999999999998 3333 23467788999999999999999999999876432 234557
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH--H-HHHhhcCCCcHHHHHHHHh
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS--A-EKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~--~-~~al~~~p~~~~~~~~l~~ 274 (543)
++.++...|++++|+..+++++...|........... ......+...|....+... . .......|........
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~--- 267 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA-ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND--- 267 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH-HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH---
Confidence 8999999999999999999997766632222111000 0112222333332222222 1 1111111221111100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY---------NSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
...+.++...|+.++|...++........ ...+....+.++...|++++|++.+..++.+.
T Consensus 268 -------~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 268 -------LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred -------HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13678889999999999999887653322 25667778999999999999999999999764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=123.88 Aligned_cols=263 Identities=18% Similarity=0.141 Sum_probs=176.4
Q ss_pred hHHHhcCCHHHHHHHHHHHHhcCCc-chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 56 NEMYRKGNFVEALKLYDKAISMSPE-NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
+.++-.|+|..++..++ ....+|. .......+.++++.+|+++..+...... .+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 34556777777776666 2233332 3455667777777777777665444331 12233444445544443334444
Q ss_pred HHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHH
Q 009096 135 ARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSC 214 (543)
Q Consensus 135 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~ 214 (543)
++..++..+... .+...+.+....|.++...|++++|++.
T Consensus 85 ~l~~l~~~~~~~----------------------------------------~~~~~~~~~~~~A~i~~~~~~~~~AL~~ 124 (290)
T PF04733_consen 85 ALEELKELLADQ----------------------------------------AGESNEIVQLLAATILFHEGDYEEALKL 124 (290)
T ss_dssp HHHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCC
T ss_pred HHHHHHHHHHhc----------------------------------------cccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444443333211 0111234455567888888999999988
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC--
Q 009096 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-- 292 (543)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-- 292 (543)
+.+. .+ +.......+++..+++++.|.+.++.+.+.+.+...... ..+++....|
T Consensus 125 l~~~-----~~------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL------------a~awv~l~~g~e 181 (290)
T PF04733_consen 125 LHKG-----GS------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL------------AEAWVNLATGGE 181 (290)
T ss_dssp CTTT-----TC------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH------------HHHHHHHHHTTT
T ss_pred HHcc-----Cc------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH------------HHHHHHHHhCch
Confidence 8765 22 223333477899999999999999999888877654431 1344444444
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW-SEAVRDYEA 371 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 371 (543)
++.+|...|++..+..+.++.+++.++.|+..+|+|++|.+.+++++..+|++++++.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6999999999998888888999999999999999999999999999999999999999999999999998 677789999
Q ss_pred HHhcCCCChHHHHH
Q 009096 372 LRRELPGDNEVAES 385 (543)
Q Consensus 372 al~~~p~~~~~~~~ 385 (543)
....+|+++-+...
T Consensus 262 L~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 262 LKQSNPNHPLVKDL 275 (290)
T ss_dssp CHHHTTTSHHHHHH
T ss_pred HHHhCCCChHHHHH
Confidence 99999999877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=112.86 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=78.0
Q ss_pred hhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe-
Q 009096 416 LEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE- 490 (543)
Q Consensus 416 ~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~- 490 (543)
.+.|.+.+. .+++++|.||++||++|+.+.|.++++++.+++ +.|+++|++.+ +++..++|.++||+++|++|+
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 346666554 457999999999999999999999999998754 89999999987 588999999999999999887
Q ss_pred -EEEEEcCC-CHHHHHHHH
Q 009096 491 -KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 -~~~~~~g~-~~~~~~~~~ 507 (543)
...++.|. +.++|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 56778888 888888775
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-12 Score=131.63 Aligned_cols=237 Identities=9% Similarity=-0.048 Sum_probs=184.5
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
..+|.+.+++..++..+...+++++|+..++.+++.+|+...+++.+|.++++.+++++|.-. .++...+.+... ..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ 101 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AI 101 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hH
Confidence 456788888888988888889999999999988888998888899999988888888887776 666665544321 22
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
.-..+..++++..- -.+++.+|.+|.++|++++|...|+++++.+|++ +.+.+++|..
T Consensus 102 ve~~~~~i~~~~~~---------------------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~ 159 (906)
T PRK14720 102 VEHICDKILLYGEN---------------------KLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATS 159 (906)
T ss_pred HHHHHHHHHhhhhh---------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHH
Confidence 22222222222111 1247788999999999999999999999999887 8889999999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh-HH----
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN-VK---- 276 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~---- 276 (543)
|... +.++|+.++.+++. .+...+++.++.+...+.+..+|++.+....+.+ +.
T Consensus 160 ~ae~-dL~KA~~m~~KAV~--------------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIY--------------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHh-hHHHHHHHHHHHHH--------------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc
Confidence 9999 99999999988843 3667779999999999999999998876433222 11
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 277 ---MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 277 ---~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.+..+..+=..|...++|++++..++.+++.+|.+..+...++.||..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 111123344778889999999999999999999999999999999983
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-14 Score=111.90 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=78.9
Q ss_pred hhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcC-cHHHHHHcCCCcccEEEEEECC-e
Q 009096 417 EKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEE-SLAIAKSEGVRTVPTFKIYKNG-E 490 (543)
Q Consensus 417 ~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~-~~~~~~~~~v~~~Pt~~~~~~g-~ 490 (543)
+.++..+.. ++++++.||++||++|+.+.|.+.+++++++ ++.|+.+|++. ++.++++|+|.++||+++|++| +
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 556666654 4489999999999999999999999999885 49999999999 9999999999999999999877 6
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 009096 491 KLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~ 507 (543)
...++.|. +.++|.++|
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66778887 988888774
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=111.92 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=74.9
Q ss_pred eehhhhhhhccCC--CCceeeeeeC-------CCCccccchhHhHHHHHhhCC-CeEEEEEeCcC-------cHHHHHHc
Q 009096 413 ISSLEKFKAAISS--PGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEE-------SLAIAKSE 475 (543)
Q Consensus 413 ~~~~~~~~~~i~~--~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~-------~~~~~~~~ 475 (543)
+.+.+.|.+.+.. +++++|.||+ +||++|+.+.|.++++..+++ ++.|++||+++ +.+++..+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 3455666666654 6799999999 999999999999999999998 59999999976 45899999
Q ss_pred CCC-cccEEEEEECCeEEEEEcCCCHHHHHHHH
Q 009096 476 GVR-TVPTFKIYKNGEKLKEMINPSHQFLEDSA 507 (543)
Q Consensus 476 ~v~-~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 507 (543)
+|. ++||+++|++|+.+..-.-.+.+.+..++
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999 99999999888543322212555555543
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=112.10 Aligned_cols=349 Identities=11% Similarity=0.031 Sum_probs=203.1
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
|.+.++.++..+..+...|...+.+-++.++...|...+++|+.+-|.-...|+.....-..+|+...|.+.|++-++..
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 56667788888888999999999999999999999999999999999888888888888888899999999999888887
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHH----------------------------HHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEK----------------------------HLNR 163 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~----------------------------~~~~ 163 (543)
|+ ..+|......-.+.++.+.|...|++.+- +|+...+......+. ...-
T Consensus 172 P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 172 PD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAF 250 (677)
T ss_pred Cc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 75 24444444444444444444444444443 333333221111100 0000
Q ss_pred HHhhhhcCCHHHHHH--------------------------------------------HHHHHHHcCCCCCHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLR--------------------------------------------ETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~--------------------------------------------~~~~~l~~~p~~~~~~~~~~a 199 (543)
+..-..++.++.|.. .|++.++.+|-+ -+.|+..-
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n-YDsWfdyl 329 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN-YDSWFDYL 329 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC-chHHHHHH
Confidence 000011111111111 133344445544 45566666
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChh--HH-HHHHHHHHH-HHHHhhcChHHHHHHHHHHhhcCCCcH----HHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPS--QV-KFLVWLLKL-MFNISELRFENAVSSAEKAGLLDYSNV----EIASV 271 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~-~~~~~~~~a-~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~ 271 (543)
.+-...|+.+.-.+.|++++...|....- +. .+..|++.+ ..-....+.+.+.+.|+.++++-|... .+|.+
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM 409 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 66677788888888888887766653221 11 112333322 223456677777777777777777543 22222
Q ss_pred HHhH-------HHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 272 LTNV-------KMVVRA--------------RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 272 l~~~-------~~~~~~--------------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
+... ..+... ...-.+-.++++++....+|++-++..|.+..+|...|.+-..+|+.+.
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHH
Confidence 2110 000000 0011223445666666677777777777777777777777777777777
Q ss_pred HHHHHHHHHhhCCCCHHHHH--HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 331 SIEDCNVALRIQPNYTKALL--RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
|...|+-|+....-+..-+. ..-..-...|.++.|...|++.|+..+..+ +|.
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWi 544 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWI 544 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHH
Confidence 77777766655433322222 222333455667777777777776665544 443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-11 Score=134.79 Aligned_cols=329 Identities=13% Similarity=0.021 Sum_probs=236.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc---------chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE---------NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-- 115 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 115 (543)
++......+..+...|++++|...+..+....+. .......+|.++...|++++|...+++++...|..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3445567788888999999999999988764221 13455667889999999999999999999865542
Q ss_pred ---hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC---
Q 009096 116 ---NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD--- 189 (543)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--- 189 (543)
..+...+|.++...|++++|...+.+++....... ........+..++..+...|++++|...+.+++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 23567789999999999999999988875100000 00112334567788899999999999999998876321
Q ss_pred --C--CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 190 --S--SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 190 --~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
. ....+..+|.++...|++++|...+.+++......... .....+..+|.++...|++++|...+.++..+.+..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ-QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 1 12335567889999999999999999988765433211 223455567999999999999999999997654332
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.......... .......+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++..
T Consensus 646 ~~~~~~~~~~-----~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 646 RYHSDWIANA-----DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred cccHhHhhHH-----HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1100000000 000124455689999999998876653332222 2567899999999999999999999886
Q ss_pred CC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 342 QP------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 342 ~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.. ....++..+|.++...|+.++|...+.+|+++......+
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 32 234678899999999999999999999999998765543
|
|
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-14 Score=110.61 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=75.0
Q ss_pred hhhhhcc---CCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-cHHHHH-HcCCCcccEEEEEECC
Q 009096 417 EKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-SLAIAK-SEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i---~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-~~~~~~-~~~v~~~Pt~~~~~~g 489 (543)
..|+..+ ..++++++.||++||++|+.+.|.+++++..+. ++.|+.+|++. ...++. .++|.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 4555554 347899999999999999999999999999886 38999999997 577886 4999999999999865
Q ss_pred -eEEEEEcC-C-CHHHHHHHH
Q 009096 490 -EKLKEMIN-P-SHQFLEDSA 507 (543)
Q Consensus 490 -~~~~~~~g-~-~~~~~~~~~ 507 (543)
.....+.| . +.+.|..||
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 55667777 3 888887764
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=119.71 Aligned_cols=107 Identities=36% Similarity=0.586 Sum_probs=101.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+...++.+...|..+++.++|.+|+..|.+||+++|.|+..|.++|.+|.++|.++.|++.++.++.++|.+..+|.+||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC-CCChHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH-HPDPNE 150 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 150 (543)
.+|..+|++++|++.|++++. .|+...
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 999999999999999999998 666553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-13 Score=127.89 Aligned_cols=116 Identities=22% Similarity=0.396 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+...|..++..|+|++|+++|+++++++|+++.+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++++|+..|+++++++|+++.+...+..+...++..
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=108.37 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=99.1
Q ss_pred ccc-ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNV-AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
... +++-+.++..|..+++.|++++|...|+-+...+|.+...|++||.|+..+|+|.+|+..|.+++.++|+++.+++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 6788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++|.|+...|+.+.|++.|+.++.
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999998886
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-14 Score=107.59 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=76.6
Q ss_pred hhhhhhhccCCCCceeeeeeC--CCCc---cccchhHhHHHHHhhCCCeEEEEEeC-----cCcHHHHHHcCCC--cccE
Q 009096 415 SLEKFKAAISSPGVSLVHFKE--ASSE---KCEEISPFVNLLCVRYPYVHFFKVDV-----EESLAIAKSEGVR--TVPT 482 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~--~~c~---~c~~~~p~l~~l~~~~~~~~~~~~d~-----~~~~~~~~~~~v~--~~Pt 482 (543)
+...|++.+...+.++|.|++ |||+ +|..+.|.+.+.+. .+.+++||+ .++.+||++|||. ++||
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPT 83 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKESYPV 83 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcCCCCE
Confidence 457788899999999999999 9999 77777776655443 389999999 4578899999999 9999
Q ss_pred EEEEECCe--EEEEEcC--CCHHHHHHHHHhc
Q 009096 483 FKIYKNGE--KLKEMIN--PSHQFLEDSANLA 510 (543)
Q Consensus 483 ~~~~~~g~--~~~~~~g--~~~~~~~~~~~~~ 510 (543)
+++|++|. ....+.| .+.+.|.++|++.
T Consensus 84 l~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 84 IYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999995 3345666 4999999999875
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-12 Score=109.65 Aligned_cols=175 Identities=18% Similarity=0.044 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
+...+-+....+|++ ..+ ..++..+...|+-+.+.....++...+|.+...... .|...+..|++.+|+..+
T Consensus 52 a~~al~~~~~~~p~d-~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~------~gk~~~~~g~~~~A~~~~ 123 (257)
T COG5010 52 AAAALGAAVLRNPED-LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA------QGKNQIRNGNFGEAVSVL 123 (257)
T ss_pred HHHHHHHHHhcCcch-HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH------HHHHHHHhcchHHHHHHH
Confidence 444555555566655 444 666777777777777777777766666666443222 266677777777777777
Q ss_pred HHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 256 EKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 256 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
.++..+.|+++.++.. +|.+|.+.|++++|...|.+++++.|.++.+..|+|..+.-.|+++.|..++
T Consensus 124 rkA~~l~p~d~~~~~~------------lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 124 RKAARLAPTDWEAWNL------------LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHhccCCCChhhhhH------------HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 7777777777776543 5777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 336 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
..+....+.+..+..+++.+....|++++|.....
T Consensus 192 l~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 192 LPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777666677777777777777777777766543
|
|
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=101.49 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=69.9
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.+..||++||++|+.+.|.+++++++++. +.+..+|+++.+++++++||.++||+++ ||+. ++.|. +.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 35689999999999999999999998864 9999999999999999999999999986 8873 77798 99999999
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 9864
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=111.88 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=127.1
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.....|...|+++.......+... |.. -+...++.++++..++++++.+|++... |..+|.+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~--~~~----------~~~~~~~~~~~i~~l~~~L~~~P~~~~~------w~~Lg~~ 82 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD--PLH----------QFASQQTPEAQLQALQDKIRANPQNSEQ------WALLGEY 82 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC--ccc----------cccCchhHHHHHHHHHHHHHHCCCCHHH------HHHHHHH
Confidence 344567888888886544432221 110 1123677889999999999999999664 5555999
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhccCCCChhHHhHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL-FSSRR--YSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
+...|++++|+..|+++++++|++..++. .+|.++ ...|+ +++|.+.++++++.+|+++.+++++
T Consensus 83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~------------~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQLRGENAELYA------------ALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 99999999999999999999999999863 367764 67777 5999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
|.++...|++++|+..+++++++.|.+.
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999988765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-11 Score=122.05 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=187.7
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-----CHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-----RLTEA 101 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A 101 (543)
++....|+..+........+....+-.+|.++++.|++++|...|...|+.+|++...+..+..+..... +.+.-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 3444456666766667777788889999999999999999999999999999999999999998884433 46667
Q ss_pred HHHHHHHHhcCCCCh--------------------------------hHHHHHHHHHHHhCCHHHHHHHhcC---CCC--
Q 009096 102 VSDCEEAVRLDPGYN--------------------------------RAHQRLASLYFRLGQVENARHHLCF---PGH-- 144 (543)
Q Consensus 102 ~~~~~~al~~~p~~~--------------------------------~~~~~la~~~~~~g~~~~A~~~~~~---a~~-- 144 (543)
...|++.....|... .....+-.+|....+..-....+.. .++
T Consensus 97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 778887766665421 1122222222211111111111111 111
Q ss_pred ---CCCh--HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC
Q 009096 145 ---HPDP--NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219 (543)
Q Consensus 145 ---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 219 (543)
.... ........+..++-++..+...|++++|+.+.+++|+..|.. ++.+...|.++-..|++.+|...++.+-
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-VELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 000001123456778888999999999999999999999987 8999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 220 KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
.+++.+-..-... +..+.+.|+.++|.+.+....+.+.+... -+......--....|.++.+.|++..|++
T Consensus 256 ~LD~~DRyiNsK~------aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~---~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 256 ELDLADRYINSKC------AKYLLRAGRIEEAEKTASLFTREDVDPLS---NLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred hCChhhHHHHHHH------HHHHHHCCCHHHHHHHHHhhcCCCCCccc---CHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999884433333 77888999999999999877655421111 01111111112457999999999999999
Q ss_pred HHHHHhcc
Q 009096 300 AYGEGLKY 307 (543)
Q Consensus 300 ~~~~al~~ 307 (543)
.|..+.+.
T Consensus 327 ~~~~v~k~ 334 (517)
T PF12569_consen 327 RFHAVLKH 334 (517)
T ss_pred HHHHHHHH
Confidence 99887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=130.28 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
+..+|.+....|++++|...++.++++.|++..++. +++.++.+.+++++|+..+++++..+|+++.+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~------------~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI------------LMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH------------HHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 333477888888888888888888888888877753 35777888888888888888888888888888
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 88888888888888888888888888778888888888888888888888888888888775543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-12 Score=125.54 Aligned_cols=223 Identities=12% Similarity=0.049 Sum_probs=189.5
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
....-..++.++...|-...|+..|++. ..|-....+|...|+..+|.....+-++.+| . +.+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d-~~l 459 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-D-PRL 459 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-c-chh
Confidence 3445567899999999999999998764 4577788899999999999999999888433 3 567
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
|..+|.+.....=|++|.++.+..-.. +-...|......++|+++.++++..++++|-....|
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~w----- 522 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTW----- 522 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHH-----
Confidence 777777777777777777776654322 112225556678999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+.+|.+..+.++++.|.++|..++.++|++.++|+|++.+|.++++-.+|...++++++.+-++...|-|.-.
T Consensus 523 -------f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 523 -------FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred -------HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCC
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+..+.|.+++|++.|.+.+.+..+
T Consensus 596 vsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 596 VSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999887544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=109.37 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=150.0
Q ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH
Q 009096 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288 (543)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~ 288 (543)
..+...+-.....+|++... .. .+..+...|+-+.+.....++...+|.+..... ..|...
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~------~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~------------~~gk~~ 110 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AK------LATALYLRGDADSSLAVLQKSAIAYPKDRELLA------------AQGKNQ 110 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HH------HHHHHHhcccccchHHHHhhhhccCcccHHHHH------------HHHHHH
Confidence 33666666667778887554 33 388899999999999999999999999887742 268999
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+..|+|.+|+..++++..+.|+++++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..+
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
+..+....+.+..+.+++..+.......
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999998776655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=105.85 Aligned_cols=276 Identities=16% Similarity=0.102 Sum_probs=209.2
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+...-.+..-+...-++|+++.|-.++.++-+..+++ ......++.+....|+++.|.....++++..|.++....
T Consensus 112 e~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr 191 (400)
T COG3071 112 EHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR 191 (400)
T ss_pred hcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence 3444455677777888889999999999999999985443 567788999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
....+|...|++.+....+.+..+ -.++.....+.. ..+...-......+..+.-...++..-.. -...+.+....
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~ 269 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHH
Confidence 999999999999999998877766 222222222211 11221111111222222211222222111 12336677788
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
+.-+...|+.++|.+....+++..-+.. +..+ .-....++...-++..++.++..|+++..+.
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~-------- 332 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS-------- 332 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChh-----HHHH----HhhcCCCCchHHHHHHHHHHHhCCCChhHHH--------
Confidence 9999999999999999999998776653 1111 1245678899999999999999999997653
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|...+++++.+
T Consensus 333 ----tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 333 ----TLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ----HHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3799999999999999999999999886 778899999999999999999999999854
|
|
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=97.58 Aligned_cols=70 Identities=17% Similarity=0.369 Sum_probs=61.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDSA 507 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~ 507 (543)
++.|+++||++|+.+.|.|+++. +.++++|.++..+++.+|+|.++||++ +|+.+.++.|+ +..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 68999999999999999998763 568899999999999999999999987 79999999998 446776654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=126.80 Aligned_cols=151 Identities=9% Similarity=-0.079 Sum_probs=134.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 181 DAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 181 ~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
.......|.. +.++.++|.+....|.+++|...++.++++.|++......+ +.++.+.+++++|+..+++++.
T Consensus 76 ~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 76 LDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------LRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------HHHHHHhccHHHHHHHHHHHhh
Confidence 3334445655 88999999999999999999999999999999996654444 9999999999999999999999
Q ss_pred cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 261 LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|++..... .+|.++.+.|++++|+++|++++..+|+++.++..+|.++...|+.++|...|+++++
T Consensus 149 ~~p~~~~~~~------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 149 GGSSSAREIL------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred cCCCCHHHHH------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999863 4799999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHH
Q 009096 341 IQPNYTKALL 350 (543)
Q Consensus 341 ~~p~~~~~~~ 350 (543)
...+-...+.
T Consensus 217 ~~~~~~~~~~ 226 (694)
T PRK15179 217 AIGDGARKLT 226 (694)
T ss_pred hhCcchHHHH
Confidence 8766555543
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-13 Score=105.11 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=78.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCC--cccEEEEEEC--CeEEEEEcCC-C
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVR--TVPTFKIYKN--GEKLKEMINP-S 499 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~-~ 499 (543)
+.++++.|+++||++|..+.|.++++++++.+ +.|+.+|+++++.+++.|||. ++||++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 67999999999999999999999999999976 999999999999999999999 9999999998 7777767777 9
Q ss_pred HHHHHHHHHhc
Q 009096 500 HQFLEDSANLA 510 (543)
Q Consensus 500 ~~~~~~~~~~~ 510 (543)
.+.|.++|+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=102.17 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=84.8
Q ss_pred hhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhCC-C-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRYP-Y-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~~-~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
...+..+...+..++.|-. ..++-+-.+.=+|++++++|+ + ++|++||+|+++.++.+|||+++||+++|+||+.+
T Consensus 25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v 104 (132)
T PRK11509 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_pred ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 3444555566666666665 467888888889999999998 3 89999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
.+++|. +.+++.++|++++..++
T Consensus 105 ~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 105 GVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEEeCcCCHHHHHHHHHHHhcCcC
Confidence 999999 99999999999886653
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=106.76 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=63.8
Q ss_pred hhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCC---C-eEEEEEeCc--CcHHHHHHcCCCcccEEEEEEC
Q 009096 416 LEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---Y-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 416 ~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.|.+.+ ..++++++.||++||++|+.+.|.+++++.++. + +.|..+|++ .++.++++|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 34555655 445699999999999999999999999998763 3 889999975 4778999999999999999998
Q ss_pred Ce
Q 009096 489 GE 490 (543)
Q Consensus 489 g~ 490 (543)
|.
T Consensus 88 ~~ 89 (114)
T cd02992 88 FS 89 (114)
T ss_pred CC
Confidence 87
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=117.62 Aligned_cols=122 Identities=25% Similarity=0.429 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+......|+.+++.|+|..|...|++++..-+.. ..++.|++.|+.++++|..|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3344668999999999999999999998753211 4679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
|+|..++|+.|.++..+|+++.|+..|++++++.|+|..+...+..+....+....+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-11 Score=107.47 Aligned_cols=312 Identities=13% Similarity=0.007 Sum_probs=189.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh--------------cCC-
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR--------------LDP- 113 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 113 (543)
..-..+|.|+++.|+|++|+..|+.+.+.+.-+.+.+.++|.|++-+|.|.+|...-.++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 45567899999999999999999999987777789999999999999999999887766521 111
Q ss_pred -----------CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 114 -----------GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
+..+-...||.+.+..-.|++|++.|.+.+.. ++. .+......+.+|.++.-|+-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~e------y~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPE------YIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-Chh------hhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 11233566778888888999999999998852 111 122344556667777777777776666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccCh------------------hHHHHHhhcC----------CCCCCCCChhHHHHHH
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQN------------------EDADSCLSNM----------PKFEHYSPPSQVKFLV 234 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~------------------~~A~~~~~~~----------~~~~~~~~~~~~~~~~ 234 (543)
.++..|++ +.+...++..++++=+- +.+...++.- ++.-|.- ....-.+
T Consensus 211 YL~q~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L--~~~IPEA 287 (557)
T KOG3785|consen 211 YLRQFPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL--MKHIPEA 287 (557)
T ss_pred HHHhCCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH--HhhChHh
Confidence 66666654 33333333333322111 1111111110 0111110 0000012
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh-----------HHHHHH-----------------HHHHHH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN-----------VKMVVR-----------------ARTRGN 286 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----------~~~~~~-----------------~~~~g~ 286 (543)
.+++...|.++++.++|+...+..--..|.......+... ++.++. -..++.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 2222444555555555555554444444433222111100 001111 122566
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 365 (543)
+++-..+|++-+.++...-...-++....+++|.++...|+|.+|.+.|-+.-..+ .+.......+|+||...++.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66777778888877777666667777888888888888889988888887765544 22334446788888888888888
Q ss_pred HHHHH
Q 009096 366 VRDYE 370 (543)
Q Consensus 366 ~~~~~ 370 (543)
...+-
T Consensus 448 W~~~l 452 (557)
T KOG3785|consen 448 WDMML 452 (557)
T ss_pred HHHHH
Confidence 77654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-11 Score=100.78 Aligned_cols=177 Identities=12% Similarity=0.018 Sum_probs=150.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
+....|...-|..++++.-...|.+ ..+....|..+...|++++|+++|+..++-+|.+...+..- --+...+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK------lAilka~ 133 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK------LAILKAQ 133 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH------HHHHHHc
Confidence 3345566667777777777777766 67777889999999999999999999999999996655543 4467788
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|+.-+|++.+.+.++..+.+.++|. .++.+|...|+|++|.-+|++.+-+.|.++..+..+|.+++-+
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~------------eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWH------------ELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHH------------HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999984 4789999999999999999999999999999999999998877
Q ss_pred c---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 326 G---LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 326 g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
| ++.-|.++|.++++++|.+..+++.+-.|....-+
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 6 47789999999999999999998888777655443
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-13 Score=118.02 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCceeeeeeC---CCCccccchhHhHHHHHhhCCCe--EEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE-EEcCC-
Q 009096 426 PGVSLVHFKE---ASSEKCEEISPFVNLLCVRYPYV--HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK-EMINP- 498 (543)
Q Consensus 426 ~~~~lv~f~~---~~c~~c~~~~p~l~~l~~~~~~~--~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~-~~~g~- 498 (543)
++..++.|.+ +||++|+.+.|.+++++++++++ .++.+|.++.++++.+|+|.++||+++|+||+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3444556777 99999999999999999999875 46666667999999999999999999999999984 89998
Q ss_pred CHHHHHHHHHhcCC
Q 009096 499 SHQFLEDSANLAPS 512 (543)
Q Consensus 499 ~~~~~~~~~~~~~~ 512 (543)
+.+++.++|+.+..
T Consensus 99 ~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 99 AGYEFAALIEDIVR 112 (215)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998753
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=107.26 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=104.9
Q ss_pred CCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 009096 36 NNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115 (543)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (543)
.+++++..+|.+....+.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 116 NRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+..++.+|.++...|++++|+..|+++++
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=117.26 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=79.9
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCC
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
..++.++|+||+|||++|+.+.|+++++.-++++ +++.++|++..+.++.+|||+++||+.+|++|..+....|..
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 5678999999999999999999999999877753 889999999999999999999999999999998888776679
Q ss_pred HHHHHHHHHhcCC
Q 009096 500 HQFLEDSANLAPS 512 (543)
Q Consensus 500 ~~~~~~~~~~~~~ 512 (543)
++.|.++-.+...
T Consensus 121 Kd~iieFAhR~a~ 133 (468)
T KOG4277|consen 121 KDAIIEFAHRCAA 133 (468)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887543
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=94.79 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=60.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~ 506 (543)
.++||++||++|+.+.|.++++.++++. +.|.++| ..+.+.++||.++||+++ ||+.+ ..|. +.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 3789999999999999999999999975 7887777 234478899999999999 99888 6674 66888877
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
++
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=103.89 Aligned_cols=294 Identities=14% Similarity=0.049 Sum_probs=217.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 57 EMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 57 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
.+.+..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHccChhHHHHHh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVACKAEAHLKLHQNEDADSCL 215 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 215 (543)
.....+... +.... ......+.+.+..+|+..+....++. | .+........|.+.++.|++++|++-|
T Consensus 99 rV~~~~~D~--~~L~~-----~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHS-----RVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHhcCC--HHHHH-----HHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHH
Confidence 988766542 11111 11222344455667777665555443 4 345677788899999999999999999
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh----cCCCcH--------HHHHHHHh-----HHHH
Q 009096 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL----LDYSNV--------EIASVLTN-----VKMV 278 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~--------~~~~~l~~-----~~~~ 278 (543)
+.+++...-++...+.+ +.+++..+++..|+++..+.++ ..|+.. ++...-+. -...
T Consensus 168 qaAlqvsGyqpllAYni------ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNL------ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHhhcCCCchhHHHH------HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999887776655554 8899999999999998877763 334321 11111111 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYD--SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+++.-.+.++++.++++.|.+.+...--.. .-+|..+.+++..-. .+++.+..+-++-.+.++|--++.+.++-.+|
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334446788999999999988775432221 124677777776554 35677777778888888987678888888888
Q ss_pred HHccCHHHHHHH
Q 009096 357 EKLGRWSEAVRD 368 (543)
Q Consensus 357 ~~~g~~~~A~~~ 368 (543)
++..-|+-|...
T Consensus 321 CKNeyf~lAADv 332 (459)
T KOG4340|consen 321 CKNEYFDLAADV 332 (459)
T ss_pred hhhHHHhHHHHH
Confidence 887777766553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-09 Score=104.19 Aligned_cols=298 Identities=16% Similarity=0.045 Sum_probs=195.9
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------------------
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD------------------- 112 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 112 (543)
+..|.|.++.+..++|+..++ ..++.+..+....|.+++++|+|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 799999999999999999999 5566667789999999999999999999999875432
Q ss_pred -----------CC-ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC--------CCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 113 -----------PG-YNRAHQRLASLYFRLGQVENARHHLCFPGH--------HPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 113 -----------p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
|. ..+.+++.|.++...|+|.+|++.++++++ ....++............++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 346789999999999999999999999822 2222222222333346778899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH------------------------------------------------HHHHHHHHHH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQL------------------------------------------------VACKAEAHLK 204 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~------------------------------------------------~~~~a~~~~~ 204 (543)
-++|...|...++.+|.+.+.. +.+.+...+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876442111 1122222222
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHH-----------------------------HHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQV-----------------------------KFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
.+..+.+.+...+.-...|....... .....+.++++....|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23333333332222222222100000 0112333466677777777777777
Q ss_pred HHHh--------hcC--CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCChhHHhHH
Q 009096 256 EKAG--------LLD--YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-------YDSYNSILYCNR 318 (543)
Q Consensus 256 ~~al--------~~~--p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l 318 (543)
...+ +.. |.-..+ +-..++..++-+.|...+.+++. -.+.....+...
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~a---------------iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGA---------------IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHH---------------HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 6322 111 111111 12234555555555555555543 333334566667
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+..-.+.|+-++|...+++.++.+|++.+++..+-.+|... +.+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 88888889999999999999999999999999998888776 56666654
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.6e-13 Score=133.10 Aligned_cols=99 Identities=19% Similarity=0.302 Sum_probs=89.0
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+...+...+..++.++|.||++||++|+.+.|.+++++..+ +++.|+.+|++.+..++++|+|.++||+++|++|+
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 45677778888889999999999999999999999887655 35999999999999999999999999999999998
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+ ++.|. +.+.|.+++++...++
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHhhCCC
Confidence 87 88888 9999999999987765
|
|
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=125.99 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred CeEEeehhhhhhhccC---CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH-HHH-HHcCCCccc
Q 009096 409 EVEEISSLEKFKAAIS---SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL-AIA-KSEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~---~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~-~~~-~~~~v~~~P 481 (543)
.+..++. +.|++.+. .+++++|+||++||++|+.+.|.|+++++++.+ +.|+++|+|.++ +++ ++|+|.++|
T Consensus 352 ~Vv~L~~-~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSR-PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCH-HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3444444 46777664 678999999999999999999999999999864 899999998653 444 789999999
Q ss_pred EEEEEECCeE-EEEEc-CC-CHHHHHHHHHhc
Q 009096 482 TFKIYKNGEK-LKEMI-NP-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~~g~~-~~~~~-g~-~~~~~~~~~~~~ 510 (543)
|+++|++|.. ...+. |. +.+.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999853 23454 45 999999999753
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=132.00 Aligned_cols=100 Identities=25% Similarity=0.403 Sum_probs=89.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+...+..++..++.++|.||++||++|+.+.|.+.+++..+ +++.|+.+|++++++++++++|.++||+++|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 44677788888889999999999999999999999888765 34999999999999999999999999999999998
Q ss_pred E-EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 K-LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~-~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
. +.++.|. +.+.|.++|.+.+.++
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHhcCCC
Confidence 8 7888898 9999999999987654
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-13 Score=116.25 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=87.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhh----CCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVR----YPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~----~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
.+++..+.....++|.||++||+..++++|+|++.++. +|+ +.+.+|||+....|+++|.|..+||+.+|.||.
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~ 83 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE 83 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccc
Confidence 44566777889999999999999999999999988764 574 899999999999999999999999999999999
Q ss_pred EEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
...| +-|- +.+.+.++|++.++.+
T Consensus 84 ~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 84 MMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred hhhhhhccchhHHHHHHHHHHHhccH
Confidence 8874 6676 9999999999987765
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=123.99 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=81.8
Q ss_pred CeEEeehhhhhhhcc---CCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-CcHHHHH-HcCCCccc
Q 009096 409 EVEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-ESLAIAK-SEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i---~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-~~~~~~~-~~~v~~~P 481 (543)
.+..++. +.+++.+ ..+++++|.||++||++|+.+.|.++++++++. ++.|+++|++ .+..++. .|+|.++|
T Consensus 346 ~Vv~Lt~-~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 346 NVVALSR-AGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CcEECCH-HHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3444444 4555554 468899999999999999999999999999985 4999999999 7788886 59999999
Q ss_pred EEEEEECCeE-EEEEcC-C-CHHHHHHHHHhc
Q 009096 482 TFKIYKNGEK-LKEMIN-P-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~~g~~-~~~~~g-~-~~~~~~~~~~~~ 510 (543)
|+++|++|.. ...+.| . +.+.|..||+.+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999998853 234543 4 999999999864
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=118.62 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+...+|......++|.++.++++..++++|-... .|+..|.+..+.++++.|.+.|..++.++|++.+.|
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaW-- 556 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAW-- 556 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhh--
Confidence 444555666667788899999999999999888744 555569999999999999999999999999999886
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
.+++.+|...++-.+|...+++|++.+-.+..+|-|.-.+....|.+++|++.|.+.+.+.
T Consensus 557 ----------nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 557 ----------NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ----------hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 3478899999999999999999999998889999999999999999999999999988764
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=129.70 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=87.6
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+.. ..|.+. +..+++++|.||++||++|+.+.|.+++++..+. .+.++++|++.+..++..++|+++||+++
T Consensus 359 v~~l~~-~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 359 VKVVVG-NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF 437 (477)
T ss_pred eEEecc-cchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEE
Confidence 444443 555554 5778899999999999999999999999998875 38899999999999999999999999999
Q ss_pred EECCeEE-EEEcCC-CHHHHHHHHHhcCCC
Q 009096 486 YKNGEKL-KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 486 ~~~g~~~-~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|++|+.+ .++.|. +.+.+.++|+++...
T Consensus 438 ~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 438 VKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 9988655 478898 999999999998753
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=112.68 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=72.2
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
...++.||++||++|+.+.|.+++++.+++++.+.++|.+++++++.+|||.++||++++++|+. +.|. +.+++.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 34555699999999999999999999998889999999999999999999999999999988864 7788 8999999
Q ss_pred HHHh
Q 009096 506 SANL 509 (543)
Q Consensus 506 ~~~~ 509 (543)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 9875
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-13 Score=106.31 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEeCcCcH-HHHHHcCCCc--ccEEEEEE-CCeE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESL-AIAKSEGVRT--VPTFKIYK-NGEK 491 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~ 491 (543)
+.+..+...+++++|+||++||++|+.+.|.+.+..... .+..|+.+|++..+ .+...|++.+ +||+++|. +|++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 444555567899999999999999999999998876543 23566677776554 4567999987 99999996 9999
Q ss_pred EEEEc---CC-CHHHHHHHHHhc
Q 009096 492 LKEMI---NP-SHQFLEDSANLA 510 (543)
Q Consensus 492 ~~~~~---g~-~~~~~~~~~~~~ 510 (543)
+.+++ |. +.+.+...|+..
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred chhhccCCCCccccccCCCHHHH
Confidence 88544 44 555555555543
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=115.47 Aligned_cols=263 Identities=13% Similarity=0.001 Sum_probs=159.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHH
Q 009096 88 RAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNR 163 (543)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (543)
-|.-+++.|++...+..|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+. .....-..+..+.+--++
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-lar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-LARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-HHHHhcchhccccccccc
Confidence 4677889999999999999999988765 35678899999999999999886432111 000000111122223334
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVD-----SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+.++...|.|++|+.+..+-+..... ....+++++|.+|...|+.-.- ..|.+...
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~---------- 162 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGA---------- 162 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhccc----------
Confidence 44555555555555555544433211 1123334444444444331100 01100000
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------Ch
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY------NS 312 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~ 312 (543)
.-......++.|.++|..-+++..+..+.. .....+=++|+.|+-+|+|+.|+..-+.-+.+... .-
T Consensus 163 -f~~ev~~al~~Av~fy~eNL~l~~~lgDr~------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeR 235 (639)
T KOG1130|consen 163 -FNAEVTSALENAVKFYMENLELSEKLGDRL------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAER 235 (639)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHhhhHH------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000001123445555555554433322221 12222345788999999999999988776665432 24
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRI----QPN--YTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
.++.++|.|+.-+|+++.|++.|++.+.+ ... .+..-|.+|..|.-..++++|+.++.+-+.+..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999997654 222 345678999999999999999999999887643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-11 Score=109.54 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..+++..+..++..|++++|...+...+...|+|+..+.+ .+.++...++..+|.+.+++++.++|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~------------~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLEL------------AGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 3466777999999999999999999999999999987654 6899999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+.++.++|.+|.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+-....+..+-..+...+..+..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888777777666665554
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 44
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=104.12 Aligned_cols=287 Identities=15% Similarity=0.098 Sum_probs=187.9
Q ss_pred cccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHH
Q 009096 26 RSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105 (543)
Q Consensus 26 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 105 (543)
+......++..+....+.+|.+-..+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+...
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 33344456666777778889899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
......+.-.......-+.+.+..+++..+....++.-...+ .....+.|-..++.|+++.|++-|+.+++
T Consensus 102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~---------Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE---------ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc---------cchhccchheeeccccHHHHHHHHHHHHh
Confidence 776543222234444556666777787777777766542222 22356667778888999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCC----CCCC----------------Ch---hHHHHHHHHHHHHHH
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKF----EHYS----------------PP---SQVKFLVWLLKLMFN 242 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~----------------~~---~~~~~~~~~~~a~~~ 242 (543)
...- .+.+-++++.++++.++++.|+++..++++. .|.. +. ......++..++-++
T Consensus 173 vsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 8543 3666777889999999999998877665443 3321 00 011123444557788
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
++.++++.|.+.+...--....+.+... + .+++.. -..+++.+..+-+.-.+.++|--.+.+.++-.+|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvT-L---------HN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVT-L---------HNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchh-h---------hHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 8888888887766544321111111110 0 111111 1223444445555555555554455555555555
Q ss_pred HHccCHHHHHH
Q 009096 323 SKMGLWENSIE 333 (543)
Q Consensus 323 ~~~g~~~~A~~ 333 (543)
.+..-|+-|..
T Consensus 321 CKNeyf~lAAD 331 (459)
T KOG4340|consen 321 CKNEYFDLAAD 331 (459)
T ss_pred hhhHHHhHHHH
Confidence 55554444443
|
|
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.7e-12 Score=102.39 Aligned_cols=86 Identities=10% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc------------HHHH-HHc---CCCcccEEEEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES------------LAIA-KSE---GVRTVPTFKIYK 487 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~------------~~~~-~~~---~v~~~Pt~~~~~ 487 (543)
...+..++.||++||++|+...|.++++.+++ ++.++.|++|.. .... ..+ +|.++||++++.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID 126 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN 126 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence 34567799999999999999999999999998 466666666642 2333 345 899999988885
Q ss_pred -CCeE-EEEEcCC-CHHHHHHHHHhc
Q 009096 488 -NGEK-LKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 488 -~g~~-~~~~~g~-~~~~~~~~~~~~ 510 (543)
+|.. +.+..|. +.+++++.|++.
T Consensus 127 ~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEeecccCHHHHHHHHHHh
Confidence 6654 5678898 999999998875
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=91.61 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=64.8
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
+.-+..|+++||++|....+.++++++.++++.+..+|+++.++++.+|||.++||+++ ||+.+.+ |. +.+++.
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~~ 87 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEIL 87 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHHh
Confidence 34566788899999999999999999999999999999999999999999999999964 8987774 76 666653
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=95.66 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 354 (543)
++.+|..+...|++++|++.|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 4568999999999999999999999999876 5789999999999999999999999999998885 678999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
++..+|++++|...++++++..|+++.+....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999999999999999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=97.46 Aligned_cols=119 Identities=36% Similarity=0.590 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
..+..++..|+-++..|+|++|..-|..|+.+.|.. ..+|.+.|.++.+++.++.|+..+.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 344556678999999999999999999999999875 457889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
++|.+|.++.++++|+..|++.++++|...++...+.++--.+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999988887776554443
|
|
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.6e-12 Score=87.57 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=55.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+..|+++||++|+.+.|.++++++.++++.|..+|+++++++++++||.++||+++ +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEEE
Confidence 56899999999999999999999888889999999999999999999999999855 676543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=103.34 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=72.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------cHHHHHHcCCCcccEEEEEEC-CeEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------SLAIAKSEGVRTVPTFKIYKN-GEKLK 493 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~~ 493 (543)
++++++.||++||++|+.+.|.|.+++++++ +.+..|++|. +..++++|||.++||+++++. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 5789999999999999999999999999985 6777777764 356899999999999999985 55554
Q ss_pred -EEcCC-CHHHHHHHHHhcCC
Q 009096 494 -EMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 494 -~~~g~-~~~~~~~~~~~~~~ 512 (543)
...|. +.++|.+.|.....
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 45587 99999999887654
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-12 Score=127.67 Aligned_cols=101 Identities=12% Similarity=0.227 Sum_probs=84.5
Q ss_pred eEEeehhhhhhhcc----CCCCceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeCcC----cHHHHHHcCCC
Q 009096 410 VEEISSLEKFKAAI----SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDVEE----SLAIAKSEGVR 478 (543)
Q Consensus 410 ~~~~~~~~~~~~~i----~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~~~----~~~~~~~~~v~ 478 (543)
...+.+.+++++.+ ..+++++|+||++||++|+.++|.+ +++.++++++.++++|+++ +.+++++|+|.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 34555666666655 3468999999999999999999875 6777888889999999985 36899999999
Q ss_pred cccEEEEEE-CCeEE--EEEcCC-CHHHHHHHHHhc
Q 009096 479 TVPTFKIYK-NGEKL--KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 479 ~~Pt~~~~~-~g~~~--~~~~g~-~~~~~~~~~~~~ 510 (543)
++||+++|+ ||+++ .++.|. +++++.+++++.
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999996 89884 688998 999999999874
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=113.69 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHH
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILY 315 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 315 (543)
...|..++..|++++|+..|+++++++|++..++ ..+|.++...|++++|+..+++++.++|+++.++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~------------~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELY------------ADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 3448889999999999999999999999998875 3479999999999999999999999999999999
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.+|.++..+|++++|+..|++++.++|+++.+...++.|..++.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876663
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=107.25 Aligned_cols=240 Identities=18% Similarity=0.100 Sum_probs=161.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhh
Q 009096 90 ATLTALGRLTEAVSDCEEAVRLDPG-YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESR 168 (543)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (543)
+-++..|+|..++..++ ....+|. .......+.+++..+|+++..+.-....-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~------------------------- 62 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS------------------------- 62 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-------------------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-------------------------
Confidence 44566777877776666 2223332 34455667777777777776665443221
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh
Q 009096 169 KIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF 248 (543)
Q Consensus 169 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 248 (543)
.| ...+...++..+...++-+.++..++..+........... .+..|.++...|++
T Consensus 63 ------------------~~--~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~----~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 63 ------------------SP--ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV----QLLAATILFHEGDY 118 (290)
T ss_dssp ------------------SC--CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH----HHHHHHHHCCCCHH
T ss_pred ------------------Ch--hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH----HHHHHHHHHHcCCH
Confidence 01 1222333344444434556677777666554333222221 22337889999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc--
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-- 326 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 326 (543)
++|++.+.+. ++.+...+ .-.++...++++.|.+.++.+-+.+.+..-+....+++....|
T Consensus 119 ~~AL~~l~~~-----~~lE~~al------------~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 119 EEALKLLHKG-----GSLELLAL------------AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHHHCCCTTT-----TCHHHHHH------------HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcc-----CcccHHHH------------HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence 9999988764 44444322 4678999999999999999999988877766666677776666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 327 LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
.+.+|...|++..+..+.++..+..+|.+++.+|+|++|.+.++++++.+|+++++..++..+...+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 5999999999988888889999999999999999999999999999999999999998887777666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-09 Score=116.97 Aligned_cols=316 Identities=16% Similarity=-0.027 Sum_probs=219.7
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH-hcCCCChhHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV-RLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~ 127 (543)
..+...+..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 44556667788899999998866654211 1123445556777788898888777665431 111234455677888899
Q ss_pred HhCCHHHHHHHhcCCCC---CCC-hHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 009096 128 RLGQVENARHHLCFPGH---HPD-PNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP----QLVACKA 199 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~a 199 (543)
..|++++|...+..+.. ..+ ..... .........+..+...|++++|...+++++...+.... .....+|
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGT--LQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchh--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 99999999998877644 111 00000 11222334677788899999999999999986554322 3456688
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc-----HHHHHHHHh
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN-----VEIASVLTN 274 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~ 274 (543)
.++...|++++|...+.+++...............+..+|.++...|++++|...+++++...... ......
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--- 575 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL--- 575 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH---
Confidence 899999999999999999987655544444444456677999999999999999999998653221 111100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---H
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---T 346 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 346 (543)
+..+|.++...|++++|...+.+++.... .....+..+|.++...|++++|...+.++..+.+.. .
T Consensus 576 ------~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 576 ------LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred ------HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 12368888999999999999999877532 124566678999999999999999988886542110 0
Q ss_pred ------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 347 ------------------------------------------KALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 347 ------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+..+|.++...|++++|...+++++...
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 013467888889999999999999998864
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-11 Score=87.67 Aligned_cols=67 Identities=27% Similarity=0.414 Sum_probs=61.5
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG-RWSEAVRDYEALRRELP 377 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 377 (543)
++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-09 Score=96.79 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=71.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh---HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---RSNRAATLTALGRLTEAVSDCEEAVRLDPGYN---RAH 119 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (543)
.+++.++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+|++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 478889999999999999999999999999999988644 48999999999999999999999999999875 456
Q ss_pred HHHHHHHHH
Q 009096 120 QRLASLYFR 128 (543)
Q Consensus 120 ~~la~~~~~ 128 (543)
+.+|.++..
T Consensus 110 Y~~g~~~~~ 118 (243)
T PRK10866 110 YMRGLTNMA 118 (243)
T ss_pred HHHHHhhhh
Confidence 666665444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-10 Score=104.86 Aligned_cols=156 Identities=15% Similarity=0.047 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
....++..+..++..|++++|+..++..++..|+|+..+... +.++...++..+|.+.+++++.++|+....+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~- 377 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------GDILLEANKAKEAIERLKKALALDPNSPLLQ- 377 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhcCCCccHHH-
Confidence 367788899999999999999999999999999997654444 9999999999999999999999999997665
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
.++|+++.+.|++.+|+..+++.+..+|+++..|..||..|..+|+..+|. .
T Consensus 378 -----------~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~ 429 (484)
T COG4783 378 -----------LNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------L 429 (484)
T ss_pred -----------HHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------H
Confidence 347999999999999999999999999999999999999999999766554 4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-CCChH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRREL-PGDNE 381 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 381 (543)
..+..+...|++++|+..+..+.+.. .+.+.
T Consensus 430 A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 430 ARAEGYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 56677778899999999999999887 44444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-08 Score=94.77 Aligned_cols=335 Identities=16% Similarity=0.080 Sum_probs=243.7
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHh-cCCcc-----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAIS-MSPEN-----AAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
..+..+|.+.+.|.....+ ..|+..+-+..|.+|++ .+|.- ...|..+|..|...|+.+.|...|+++++..
T Consensus 340 VlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 4567899999999987665 57899999999999986 46654 4789999999999999999999999999875
Q ss_pred C----CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHH-----------HhHHHHHHHHHHHHHhhhhcCCHHHHH
Q 009096 113 P----GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNE-----------LLKLQSFEKHLNRCAESRKIGDWKTVL 177 (543)
Q Consensus 113 p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (543)
= +....|..-|..-.+..+++.|+...+++..-|.+.. ......+..|...+......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 2 2367899999999999999999999999987333211 122234556677778888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 178 RETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 178 ~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
..|++++.+.--. |.+..+.|..+....-+++|.+.|++.+.+.+-.... .....++.....-+.-...+.|..+|++
T Consensus 498 ~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~-diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 498 AVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY-DIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999986544 7888888999999999999999999999988654221 1112233333344555678999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-ChhHHhHH--HHHHHHccCHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-NSILYCNR--AICWSKMGLWENSIED 334 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l--a~~~~~~g~~~~A~~~ 334 (543)
|++..|.. .+..++ ...+..-.+-|--..|++.|++|...-+. +-...+++ ..+-...| ...-...
T Consensus 576 aL~~Cpp~-~aKtiy---------LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~i 644 (835)
T KOG2047|consen 576 ALDGCPPE-HAKTIY---------LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREI 644 (835)
T ss_pred HHhcCCHH-HHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHH
Confidence 99988832 221111 12355556668889999999998765432 21111211 11111112 3445678
Q ss_pred HHHHHhhCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--ChHHHHHHHH
Q 009096 335 CNVALRIQPNYT--KALLRRAVSNEKLGRWSEAVRDYEALRRELPG--DNEVAESLHN 388 (543)
Q Consensus 335 ~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 388 (543)
|++||+.-|+.. +.-...|..-.++|..+.|...|.-+-++.+- +.+.|+....
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 899998888754 44567788889999999999999998887543 4555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=87.46 Aligned_cols=68 Identities=34% Similarity=0.573 Sum_probs=65.6
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 113 (543)
+++..|+.+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 368899999999999999999999999999999999999999999999999 79999999999999988
|
... |
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=96.04 Aligned_cols=95 Identities=22% Similarity=0.396 Sum_probs=88.7
Q ss_pred ccCCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
-.-.|....+.+...|-+.......+++.||-+....|+.|...|+.|+.++.+.+|++||.+..+.++.+++|..+||+
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred HcCCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeE
Confidence 34457788888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC
Q 009096 484 KIYKNGEKLKEMINP 498 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~ 498 (543)
.+|+||+.+++++|+
T Consensus 142 ~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGF 156 (211)
T ss_pred EEEEcCEEEEEEeeH
Confidence 999999999999995
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=119.72 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=74.1
Q ss_pred cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEE----------------------------eCcCcHHHH
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKV----------------------------DVEESLAIA 472 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~----------------------------d~~~~~~~~ 472 (543)
+..+++++|+||++||++|+.+.|.|.++.++++ ++.|+.| ++|....++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3467899999999999999999999999999885 4655444 345567899
Q ss_pred HHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 473 KSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
+.|+|.++||++++ ++|+++.++.|. +.++|+++|+
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999998665 699999999998 9999999999
|
|
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-12 Score=98.92 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=66.1
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHH---HHhhCC-CeEEEEEeCcCc--------------------HHHHHHcCCCc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNL---LCVRYP-YVHFFKVDVEES--------------------LAIAKSEGVRT 479 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~~-~~~~~~~d~~~~--------------------~~~~~~~~v~~ 479 (543)
..++++++.|+.+||+.|+.+.+.+.. +...+. ++.++.++++.. .++++.|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 357899999999999999999998875 444443 588888888753 35999999999
Q ss_pred ccEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 480 VPTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 480 ~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
+||++++. +|+++.++.|+ ++++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999996 89999999999 999998875
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-10 Score=93.74 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.|+..+|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+.+.|..+|+.+++ .|.+..+...-......+++
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 99999999999999 57777776544444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-12 Score=111.47 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=178.5
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (543)
+...|+.|+++|.|++||.||.+++..+|.|+..+.++|.+|+++..+..|...+..|+.++..+..+|.+.+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56788999999999999999999999999999999999999999999999999999999998888888888888888887
Q ss_pred CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 131 QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 131 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
...+|.+.++.++. +.|.. .++ -..+.......+
T Consensus 180 ~~~EAKkD~E~vL~-----------------------------------------LEP~~-~EL----kK~~a~i~Sl~E 213 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA-----------------------------------------LEPKN-IEL----KKSLARINSLRE 213 (536)
T ss_pred hHHHHHHhHHHHHh-----------------------------------------hCccc-HHH----HHHHHHhcchHh
Confidence 77777776655543 33332 111 111111111111
Q ss_pred HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh
Q 009096 211 ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS 290 (543)
Q Consensus 211 A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~ 290 (543)
+.- +.+..|. +-+|..--.+++. ....|..+..
T Consensus 214 ~~I----~~KsT~G-----------------------~~~A~Q~~~Q~l~--------------------~K~~G~~Fsk 246 (536)
T KOG4648|consen 214 RKI----ATKSTPG-----------------------FTPARQGMIQILP--------------------IKKPGYKFSK 246 (536)
T ss_pred hhH----HhhcCCC-----------------------CCccccchhhhcc--------------------ccCcchhhhh
Confidence 100 0000111 1111111111211 1224677888
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
.|.++.++.+|.+-+....++..+..+ +..|.+.-+++.|+..+.+++..+|....+....+.+---+|...++...++
T Consensus 247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~ 325 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQ 325 (536)
T ss_pred hhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchh
Confidence 889999999998888777777666666 8888899999999999999999988877777777777777888999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHH
Q 009096 371 ALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 371 ~al~~~p~~~~~~~~l~~~~~~ 392 (543)
.++.+.|.+......+.+....
T Consensus 326 T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 326 TAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred heeeeccccccchhhhhhhccc
Confidence 9999999998887766654433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-09 Score=94.41 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=64.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---hHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN---RAH 119 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (543)
.+++.++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 367889999999999999999999999999988765 57889999999999999999999999999998875 355
Q ss_pred HHHHHHHHH
Q 009096 120 QRLASLYFR 128 (543)
Q Consensus 120 ~~la~~~~~ 128 (543)
+.+|.+++.
T Consensus 83 Y~~g~~~~~ 91 (203)
T PF13525_consen 83 YMLGLSYYK 91 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556655444
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=103.72 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=71.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----------------------HHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----------------------AIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----------------------~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.+.++.++ ++.++.|+.++.. .++..|||.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 578999999999999999999999998753 6778888765432 355689999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++++ ++|+++.+..|. +.+++++.|+..+.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 76666 599999999998 99999999987653
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=117.18 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=80.0
Q ss_pred eEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+.. +.|++ +....+.++|.||+|||+||+.+.|.+++|++.|. ++.++++|.+.|.-- ..+|.++|||++
T Consensus 368 VkvvVg-knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~--~~~~~~fPTI~~ 444 (493)
T KOG0190|consen 368 VKVVVG-KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVP--SLKVDGFPTILF 444 (493)
T ss_pred eEEEee-cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCc--cccccccceEEE
Confidence 334444 44555 45678999999999999999999999999999884 499999999988643 556778999999
Q ss_pred EECCeE--EEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNGEK--LKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~--~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|+.|.. +-.+.|. +.+++..+|++.-.
T Consensus 445 ~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 445 FPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 997753 4445676 99999999988765
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=96.31 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=66.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHh-H--HHHHhhC-CCeEEEEEeCcCcHHHHHH--------cCCCcccEEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPF-V--NLLCVRY-PYVHFFKVDVEESLAIAKS--------EGVRTVPTFK 484 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~-l--~~l~~~~-~~~~~~~~d~~~~~~~~~~--------~~v~~~Pt~~ 484 (543)
+.+..+.+.+++++++|+++||++|+.|.+. + .++.+.+ .++.++++|.++.+++++. ||+.++||++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4456677789999999999999999999873 2 3555554 5799999999998877653 5899999999
Q ss_pred EEE-CCeEEEEEcCC
Q 009096 485 IYK-NGEKLKEMINP 498 (543)
Q Consensus 485 ~~~-~g~~~~~~~g~ 498 (543)
++. +|+++...++.
T Consensus 86 fl~~~G~~~~~~~~~ 100 (124)
T cd02955 86 FLTPDLKPFFGGTYF 100 (124)
T ss_pred EECCCCCEEeeeeec
Confidence 995 89999877665
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-10 Score=97.89 Aligned_cols=133 Identities=19% Similarity=0.153 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
.+.-+.-++.-+..+|++.+-|.+ +|.+|+..|++..|...|.+++++.|++++.+..+|.++....+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~------------Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDL------------LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHH------------HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 445566778889999999999865 69999999999999999999999999999999999999887643
Q ss_pred ---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 328 ---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 328 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
..++...+++++..+|.++.+.+.+|..++..|+|.+|...+++.++..|.+..-...+.+....
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999887766555544433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=98.63 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=105.4
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|++..++
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 456778899999999999999999999999999887653 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
..+|.++...|+...+...+.+++ ..+++|+..+++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999999887766553332 24678888999999988876
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-10 Score=97.33 Aligned_cols=167 Identities=18% Similarity=0.103 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|+..+..++..|..++..|++.+|+..|++++...|..+... .+.+.+|.+++..|++++|+..+++.++..|+++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~---~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP---QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 344466677777777888888888888888877777765433 23445588888888888888888888888888775
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHhccCCCChh-----------------HHhHHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLF-----------SSRRYSEACSAYGEGLKYDSYNSI-----------------LYCNRA 319 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~-----------~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la 319 (543)
+-..+ +.+|.+++ ..+...+|+..|+..+...|++.. --+..|
T Consensus 78 ~~~A~---------Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 78 ADYAL---------YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHH---------HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333 22444433 334456899999999999998732 224467
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 366 (543)
..|.+.|.|..|+..++.+++..|+.+ +++..++.++.++|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888999999999999999888865 67888888899988887544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-09 Score=96.56 Aligned_cols=171 Identities=17% Similarity=0.107 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 189 DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
+..+..++..|..+...|++++|+..|++++...|..+... .+.+.+|.++++.+++++|+..+++.++.+|+++.+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~---~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ---QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 34566777889999999999999999999999999874432 234556999999999999999999999999999877
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHhccCCCCh-----------------h
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSR------------------RYSEACSAYGEGLKYDSYNS-----------------I 313 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~------------------~~~~A~~~~~~al~~~p~~~-----------------~ 313 (543)
-..+ +.+|.++...+ ...+|+..|++.++..|++. .
T Consensus 106 ~~a~---------Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 106 DYVL---------YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHH---------HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 5444 33565543332 13578899999999999872 2
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
--+..|..|.+.|.|..|+.-++.+++..|+. .++++.++.+|..+|..++|......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 23446788999999999999999999998875 48899999999999999999887654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=87.41 Aligned_cols=98 Identities=31% Similarity=0.459 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 009096 361 RWSEAVRDYEALRRELPG 378 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~ 378 (543)
++++|...+.++++..|+
T Consensus 83 ~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 83 KYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHccCCC
Confidence 999999999999998874
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.4e-10 Score=102.65 Aligned_cols=165 Identities=20% Similarity=0.181 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHH
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFEN 250 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~ 250 (543)
++++|+.++++++ .+|...|++..|-..+.++ |.+|... |++++
T Consensus 89 ~~~~Ai~~~~~A~---------------~~y~~~G~~~~aA~~~~~l--------------------A~~ye~~~~d~e~ 133 (282)
T PF14938_consen 89 DPDEAIECYEKAI---------------EIYREAGRFSQAAKCLKEL--------------------AEIYEEQLGDYEK 133 (282)
T ss_dssp THHHHHHHHHHHH---------------HHHHHCT-HHHHHHHHHHH--------------------HHHHCCTT--HHH
T ss_pred CHHHHHHHHHHHH---------------HHHHhcCcHHHHHHHHHHH--------------------HHHHHHHcCCHHH
Confidence 6666666666554 3456677777776655443 8888888 89999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hhHHhHHHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SILYCNRAICWS 323 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~ 323 (543)
|+++|++++........... ....+...|.++...|+|++|++.|+++....-++ ...++..+.|++
T Consensus 134 Ai~~Y~~A~~~y~~e~~~~~------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 134 AIEYYQKAAELYEQEGSPHS------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHH------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhh------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 99999999866432221111 11123468999999999999999999988753222 245677889999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH--ccCHHHHHHHHHHHHhcCC
Q 009096 324 KMGLWENSIEDCNVALRIQPNYT-----KALLRRAVSNEK--LGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 377 (543)
..||+..|...+++....+|... .....+-.++.. ...+.+|+..|++..+++|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 99999999999999999998653 333444444432 3468888888887766654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=103.33 Aligned_cols=114 Identities=29% Similarity=0.432 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
...+.+.|+.|+++|+|++|+.+|.+++..+|.++..+.+++.+|++++.+..|...+..++.++.....+|-++|.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.+|+..+|.+.++.++++.|++.++...+..+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999998887766655443
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-11 Score=101.19 Aligned_cols=86 Identities=17% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCcc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTV 480 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~ 480 (543)
..+++++++||++||++|+.+.|.++++.++ ++.++.|+. |....+++.|+|.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3578999999999999999999999998764 355555553 334467889999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++++ +||+++.+..|. +.+++.++|++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 965555 699999999998 9999999998765
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-08 Score=85.43 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.+...-+.++...+++++|++....... +.+....-+++.++.+++-|...++++.+++.+..-.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt---- 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT---- 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH----
Confidence 4555668899999999999999887432 2233333678999999999999999999887765433
Q ss_pred HhHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 273 TNVKMVVRARTRGNNLF----SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
++|.++. ..+++.+|.-+|++.-+..|..+......+.|...+|+|++|...++.++..++++++.
T Consensus 174 ----------QLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 174 ----------QLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred ----------HHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 2344443 34569999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHH-HHHHHHHhcCCCChHHH
Q 009096 349 LLRRAVSNEKLGRWSEAV-RDYEALRRELPGDNEVA 383 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~ 383 (543)
+.++-.+-...|.-.++. +.+.+....+|+++-+.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999876655 56677777888887765
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-11 Score=95.84 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=63.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe-----------------------CcCcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD-----------------------VEESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d-----------------------~~~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.++++.+++ ++.++.|+ +|....++..|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 3678999999999999999999999998886 36665555 34556788999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHH
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~ 503 (543)
+.+++ ++|+++.++.|. +.+.+
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 65555 699999999998 76654
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-11 Score=88.20 Aligned_cols=82 Identities=28% Similarity=0.390 Sum_probs=74.0
Q ss_pred hcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
..|+|++|+..|+++++..|. +...++.+|.|+++.|+|++|+..+++ ...+|.+...++.+|.|+.++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88899999999999999999999999999
Q ss_pred HHHHH
Q 009096 368 DYEAL 372 (543)
Q Consensus 368 ~~~~a 372 (543)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=93.05 Aligned_cols=113 Identities=21% Similarity=0.206 Sum_probs=95.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
.+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.+...+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 47788999999999999999999999999887653 468999999999999999999999999999999999999999
Q ss_pred HHHH-------HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009096 124 SLYF-------RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQ 193 (543)
Q Consensus 124 ~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 193 (543)
.++. .+|++++|+.. +++|+..+++++..+|+....
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~----------------------------------~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAW----------------------------------FDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHH----------------------------------HHHHHHHHHHHHHhCcccHHH
Confidence 9998 44455554443 456777888899888876433
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-11 Score=118.36 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=84.3
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..+.. ..|.+. ...++.++|.||++||++|+.+.|.++++++.+. ++.|+++|++.+. +.. ++|.++||++
T Consensus 348 v~~l~~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 348 VKVLVG-KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred cEEeeC-cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 333443 455554 4568899999999999999999999999999885 3889999999875 444 9999999999
Q ss_pred EEECCeEE--EEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 485 IYKNGEKL--KEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 485 ~~~~g~~~--~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|++|... .++.|. +.+.+.++|++..+...+
T Consensus 425 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred EEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 99988653 567787 999999999998866544
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=81.49 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666677777777777777777777777777777777777777777777777777766654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=92.72 Aligned_cols=99 Identities=25% Similarity=0.334 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|++++|+..+++++...|++..++..+|.++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3568999999999999999999999887654 4689999999999999999999999999999999999999999999
Q ss_pred HccC--------------HHHHHHHHHHHHhcCCCC
Q 009096 358 KLGR--------------WSEAVRDYEALRRELPGD 379 (543)
Q Consensus 358 ~~g~--------------~~~A~~~~~~al~~~p~~ 379 (543)
..|+ +++|++++++++..+|++
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9887 678888888888888887
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=80.89 Aligned_cols=65 Identities=26% Similarity=0.440 Sum_probs=60.6
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
|
|
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-10 Score=93.75 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=58.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC---------CCeEEEEEeCcCc-------------------------HH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY---------PYVHFFKVDVEES-------------------------LA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---------~~~~~~~~d~~~~-------------------------~~ 470 (543)
.++++++.|||+||++|+...|.|.++.+++ .++.++.|+.|+. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999877643 2478888887642 25
Q ss_pred HHHHcCCCcccEEEEEE-CCeEEEE
Q 009096 471 IAKSEGVRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 471 ~~~~~~v~~~Pt~~~~~-~g~~~~~ 494 (543)
++..|+|.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 78899999999999886 9998876
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=93.14 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=100.4
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICW 322 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 322 (543)
+.+..+...+.+.++..+.+..+.. +..+|.++...|++++|+..|++++.+.|+. +.++.++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~----------~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFT----------YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 3455666666655555555544332 3457999999999999999999999887663 46899999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HccCHH-------HHHHHHHHHHhcCCCCh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE-------KLGRWS-------EAVRDYEALRRELPGDN 380 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 380 (543)
...|++++|+..|++++.++|.+...+.++|.++. .+|+++ +|+..|++++..+|++.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999999998 777766 66666677788888654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-11 Score=87.90 Aligned_cols=81 Identities=32% Similarity=0.490 Sum_probs=72.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (543)
.+|+|++|+..|+++++.+|. +...++.+|.||+..|+|++|+..+++ .+.+|.+...++.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567788899999999999999999999 88889898999999999999999999999
Q ss_pred HhcC
Q 009096 138 HLCF 141 (543)
Q Consensus 138 ~~~~ 141 (543)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9864
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=90.04 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=100.4
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
....+..-+..+..|..+++.|++++|...|+-....+|.++..+..||.|+..+++|++|+..|..+..++++++...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPD 147 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~ 147 (543)
..|.|+..+|+.+.|+.+|..++..+.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHhCcc
Confidence 999999999999999999998887433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-08 Score=92.15 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHc-CC----CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 009096 171 GDWKTVLRETDAAIAI-GV----DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE 245 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~-~p----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 245 (543)
|+..+-+..|..++.. +| .....+|...|..|...|+.+.|...|+++.+..-...+. ....|..-|..-...
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d--La~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED--LAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH--HHHHHHHHHHHHHhh
Confidence 4455555555555542 22 2344556666666666666666666666666554333222 223455556666666
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHh--------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTN--------VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
.+++.|+.+.+.+... |..+.. ..+.+ .+...-|...+......|-++.....|++.+.+.--.|..-.|
T Consensus 439 ~~~~~Al~lm~~A~~v-P~~~~~-~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHV-PTNPEL-EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhHHHHHHHHHhhhcC-CCchhh-hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 6666666666666543 333321 11111 1112223334555555667777777777777777667777888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHH---HHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQ--PNYTKALLRR---AVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
.|..+....-+++|.+.|++.+.+. |.-.+.|... ...-+.--+.+.|...|++|++..|
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888875 3444555432 2222233478999999999999888
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=101.40 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=116.7
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.+|...+++++|...|.++................+...+.++... ++++|+.+|++++.+.-...... ..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~------~aA 114 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS------QAA 114 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH------HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH------HHH
Confidence 44555555555555555555443322222222233333335665555 88899999998886532222111 112
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 009096 279 VRARTRGNNLFSS-RRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------ 345 (543)
Q Consensus 279 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 345 (543)
..+..+|.+|... |++++|+++|++|++..... ...+..+|.++..+|+|++|++.|+++....-++
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 2345689999998 99999999999999874221 4677889999999999999999999998753221
Q ss_pred H-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 346 T-KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 346 ~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
. ..++..+.|++..||...|...+++....+|.-...
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 1 456778889999999999999999999999865443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=89.29 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (543)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5688999999999999999999999999999876 5789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC
Q 009096 122 LASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|.++..+|++++|+..+.+++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 99999999999999999998887
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=97.32 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=94.2
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 009096 283 TRGNNL-FSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVS 355 (543)
Q Consensus 283 ~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 355 (543)
..|..+ ...|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.+|.+
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 356555 56799999999999999999998 5799999999999999999999999999988874 6899999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
+..+|++++|...|+++++..|+...+.....
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 99999999999999999999999987664443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=97.55 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=110.0
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCC----CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDY----SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
|..+++.|+|..|...|++++..-+ .+.+-..... -.....+.+++.++.++++|.+|+....++|.++|++..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~-~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAE-ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHH-HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 7888888888888888888774322 1111111010 1123345789999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHhcCC
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA-VRDYEALRRELP 377 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 377 (543)
++..|.++..+|+|+.|+..|+++++++|+|..+...+..+..+..++.+. .+.|.+.+...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999998887776655 666666665544
|
|
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=93.58 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=68.3
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-------------HHHHHHcCC--CcccEEEEE-ECCeEE-
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-------------LAIAKSEGV--RTVPTFKIY-KNGEKL- 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-------------~~~~~~~~v--~~~Pt~~~~-~~g~~~- 492 (543)
++.||++||++|+...|.+.++.+++ ++.++.|++|.. ..+...||+ .++||.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 467766766532 347778995 699998888 599886
Q ss_pred EEEcCC-CHHHHHHHHHhcCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+.|. +.+++++.|++.+..
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 578898 999999999987644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=95.48 Aligned_cols=288 Identities=15% Similarity=0.053 Sum_probs=200.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC----CC--ChhH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLD----PG--YNRA 118 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~ 118 (543)
+......|..+++..++++|+....+.+..-.+. ...+-.+..++..+|.|++++..--..+... .. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999999999999888754332 2344556677888888888776654443322 11 1355
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVAC 197 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~ 197 (543)
+.+++..+.+..++.+++.+-+..+..|... | .........
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~--------------------------------------~~~~~gq~~l~ 127 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTR--------------------------------------AGQLGGQVSLS 127 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCC--------------------------------------cccccchhhhh
Confidence 6666666666666666666544333211111 1 112344556
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-EIASVLTNVK 276 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~ 276 (543)
++.++..++.++++++.|+.+++....+.+....+.....+|..+-.+.++++|+-+..++.++..... .-| ....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~---~~ky 204 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW---SLKY 204 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch---hHHH
Confidence 788888889999999999999888777777777777778889999999999999999998886643221 111 1112
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYD------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------ 344 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 344 (543)
....++.++.++..+|+.-.|.++.+++.++. +..+.....+|.+|...|+.+.|..-|+.+......
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmg 284 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMG 284 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHH
Confidence 23345778999999999999999999998763 334567778999999999999999999999875322
Q ss_pred CHHHHHHHHHHHHHccCHHH-----HHHHHHHHHhcC
Q 009096 345 YTKALLRRAVSNEKLGRWSE-----AVRDYEALRREL 376 (543)
Q Consensus 345 ~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~ 376 (543)
...++...|.++....-..+ |++.-++++++.
T Consensus 285 qv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 285 QVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 24666777777766554444 777777777764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-09 Score=85.91 Aligned_cols=123 Identities=15% Similarity=0.027 Sum_probs=101.8
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCN 317 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 317 (543)
.....++...+...+++.+...|+.+..... .+.+|.+++..|++++|+..|+.++...|+. ..+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A---------~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALA---------ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHH---------HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3446788888888899999999998544322 2457999999999999999999999987665 467888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999976 33344556788899999999999999999999875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-09 Score=85.82 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=81.5
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQR 121 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (543)
+...+..+......++...+...+++.++.+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4456666777778999999999999999999988 5778889999999999999999999999987664 467888
Q ss_pred HHHHHHHhCCHHHHHHHhcCC
Q 009096 122 LASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a 142 (543)
+|.++...|++++|+..++..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999988653
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-09 Score=103.34 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhc---ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHH
Q 009096 235 WLLKLMFNISEL---RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS--------SRRYSEACSAYGE 303 (543)
Q Consensus 235 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~ 303 (543)
++.+|.-+...+ +...|+.+|+++++++|++..++..+ +.++.. ..+...+.+...+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l------------a~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK------------ALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344466665544 47899999999999999998886543 222211 1235667777777
Q ss_pred Hhcc--CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 304 GLKY--DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 304 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++.+ +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 6664 777788999999999999999999999999999999 5889999999999999999999999999999999986
Q ss_pred H
Q 009096 382 V 382 (543)
Q Consensus 382 ~ 382 (543)
.
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=83.75 Aligned_cols=95 Identities=35% Similarity=0.518 Sum_probs=90.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCC
Q 009096 130 GQVENARHHLCFPGH 144 (543)
Q Consensus 130 g~~~~A~~~~~~a~~ 144 (543)
|++++|...+.++++
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999999877654
|
|
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=91.43 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCc------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEES------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~------------------------~~~~~~~~ 476 (543)
.+++++|.||++||++|+...|.+.++.+++. ++.++.+++|.. ..+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 46789999999999999999999998877662 577777777643 35788999
Q ss_pred CCcccEEEEEE-CCeEEEE
Q 009096 477 VRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~ 494 (543)
|.++||++++. +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 9988765
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-10 Score=91.28 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCc-------------------------HHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEES-------------------------LAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~-------------------------~~~~~~~ 475 (543)
.++++++.||++||++|+...|.+.++.+++. ++.++.|+++.. ..+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 36899999999999999999999998887663 477877877653 2567789
Q ss_pred CCCcccEEEEEE-CCeEEEEE
Q 009096 476 GVRTVPTFKIYK-NGEKLKEM 495 (543)
Q Consensus 476 ~v~~~Pt~~~~~-~g~~~~~~ 495 (543)
+|.++||++++. +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999986 88877653
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.7e-10 Score=88.35 Aligned_cols=82 Identities=27% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEE--------------------EeCcCcHHHHHHcCCCcccEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFK--------------------VDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~--------------------~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
.++++++.||++||++|+.+.|.+.++.+++.-+.+.. +-.+.+..++++|+|.++||++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 45789999999999999999999999887743221111 1123456799999999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHH
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
++++|.++.+..|. ++++|++.
T Consensus 99 vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 99 IVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEcCCCeEEEEeccCCHHHHHhh
Confidence 99755588899998 99888764
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=90.15 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCC
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (543)
+.+.-+.-++.-+..+|+|++-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.+++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~----------- 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG----------- 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----------
Confidence 356667778888889999999999999999999999999999999999999999999999988776533
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC
Q 009096 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222 (543)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 222 (543)
..+-.++...+++++..+|.+ ....+.+|..++..|+|.+|...++..++..
T Consensus 206 ---------------------------~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 206 ---------------------------QQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---------------------------CcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 223345667778888888887 6777888899999999999999999988888
Q ss_pred CCCChhHH
Q 009096 223 HYSPPSQV 230 (543)
Q Consensus 223 ~~~~~~~~ 230 (543)
|.+.....
T Consensus 258 p~~~~rr~ 265 (287)
T COG4235 258 PADDPRRS 265 (287)
T ss_pred CCCCchHH
Confidence 87755433
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-10 Score=108.00 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=86.8
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
....+.......+++++.||++||++|+.+.|.+.+++..+.+ +.+..||++.+..++.+|+|.++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 4455555667789999999999999999999999999999987 999999999999999999999999999999995555
Q ss_pred EEcCC-CHHHHHHHHHhcCCCC
Q 009096 494 EMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+.|. +.+.+.+++.+...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred eccCcccHHHHHHHHHHhhccc
Confidence 56666 8899999988776554
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-10 Score=84.05 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=55.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc-------------------------HHHHHHcCC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES-------------------------LAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~-------------------------~~~~~~~~v 477 (543)
+++++++||++||++|+...|.+.++.++++ ++.|+.|.+|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4689999999999999999999999999998 599998888753 358899999
Q ss_pred CcccEEEEEE-CCeE
Q 009096 478 RTVPTFKIYK-NGEK 491 (543)
Q Consensus 478 ~~~Pt~~~~~-~g~~ 491 (543)
.++|+++++. +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999998886 7764
|
... |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=93.29 Aligned_cols=86 Identities=22% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC----------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE----------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~----------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||++||+.|+...|.+.++.+++++ +.++.++++. ...+++.|||.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 457899999999999999999999999999864 8888888653 4578899999999
Q ss_pred cEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 481 PTFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|+++++. +|+++....|. +.++++++++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9988885 99999898998 999999998865
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=118.39 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEe-----C----------------------cCcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVD-----V----------------------EESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d-----~----------------------~~~~~~~~~~ 475 (543)
.+++++|+||++||++|+...|.|+++.++|++ +.++.|. - |....+..+|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999965 7777663 1 2244678899
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|.++||++++ ++|+++.+..|. ..+++.++|+..+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 699999999998 99999999997643
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-08 Score=82.99 Aligned_cols=196 Identities=15% Similarity=0.100 Sum_probs=105.9
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
+..++.+|..|-..|-+.-|...|.+++.+.|+.+.++..+|..+...|+|+.|.+.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaF---------------------- 122 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF---------------------- 122 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHh----------------------
Confidence 4556666666667777777777777777777777777777766666666665555544
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
+..++++|.. ..++.++|..++.-|++.-|.+.+.+.-+.+|.+|.... |+. +
T Consensus 123 -------------------ds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L----WLY---l 175 (297)
T COG4785 123 -------------------DSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSL----WLY---L 175 (297)
T ss_pred -------------------hhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHH----HHH---H
Confidence 3334444444 344455555555566666666666665556666543211 111 1
Q ss_pred HHhhcChHHHHHHHH-HHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hh
Q 009096 242 NISELRFENAVSSAE-KAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SI 313 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 313 (543)
-...-++.+|...+. ++...+.+...... +-+..|+..+ ...++++.+-..++ .+
T Consensus 176 ~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i----------------V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTE 238 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAEKSDKEQWGWNI----------------VEFYLGKISE-ETLMERLKADATDNTSLAEHLTE 238 (297)
T ss_pred HHhhCCHHHHHHHHHHHHHhccHhhhhHHH----------------HHHHHhhccH-HHHHHHHHhhccchHHHHHHHHH
Confidence 122234445544333 33333323222111 1112222211 12233333322222 46
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
+++.+|..+...|+.++|...|+-++..+-
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 788888888888888888888888887653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.8e-09 Score=96.68 Aligned_cols=144 Identities=10% Similarity=-0.015 Sum_probs=116.6
Q ss_pred HHHHHHHHhhc---ChHHHHHHHHHHh---hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 236 LLKLMFNISEL---RFENAVSSAEKAG---LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 236 ~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
+.+|......+ ..+.|+.+|.+++ .++|+...++..+..+.....+ .|..- ......+|.+.-+++++++|
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~--~g~~~-~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL--HGKSE-LELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH--hcCCC-chHHHHHHHHHHHHHHhcCC
Confidence 44466555444 3567899999999 9999988887654322111111 11111 34556789999999999999
Q ss_pred CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.|+.++..+|.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|.-..+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-08 Score=79.67 Aligned_cols=203 Identities=17% Similarity=0.080 Sum_probs=142.4
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+...+..++..|..|-..|-++-|.-.|.+++.+.|+-+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.+.|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34467788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRET-DAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~~~~~~a~ 200 (543)
..++.-|++.-|.+.+.+.-+ +.+|-....+ +++ ...-+..+|...+ +++...+.+. .-+. +..
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-----Yl~-----E~k~dP~~A~tnL~qR~~~~d~e~--WG~~-iV~ 207 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-----YLN-----EQKLDPKQAKTNLKQRAEKSDKEQ--WGWN-IVE 207 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-----HHH-----HhhCCHHHHHHHHHHHHHhccHhh--hhHH-HHH
Confidence 999999999999998877665 3333221111 111 1233555555544 3444332221 1111 222
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCCh-hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
. .+|+..+ ...++++.....++.. .......++.+|..+...|+.++|...|+-++..+
T Consensus 208 ~--yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 208 F--YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H--HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2 2333221 1122333333333322 22333567788999999999999999999887654
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=84.68 Aligned_cols=72 Identities=26% Similarity=0.361 Sum_probs=65.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcCc-----------------------HHHHHHcCCCcc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES-----------------------LAIAKSEGVRTV 480 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~-----------------------~~~~~~~~v~~~ 480 (543)
++++++.||++||+.|+...+.+.++..++ +++.++.|+++.. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 679999999999999999999999999999 5799999999885 789999999999
Q ss_pred cEEEEEE-CCeEEEEEcC
Q 009096 481 PTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g 497 (543)
|+++++. +|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9998885 8999988766
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.5e-08 Score=77.97 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~ 354 (543)
++..|...++.|+|++|++.|+.+....|.. ..+...+|.+|++.+++++|+..+++-++++|.++ -+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 4568999999999999999999999988865 57899999999999999999999999999999986 67999999
Q ss_pred HHHHccC---------------HHHHHHHHHHHHhcCCCChHHHHH
Q 009096 355 SNEKLGR---------------WSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 355 ~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
++..+.. ..+|...|++.++..|+++.+...
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 9999877 899999999999999999877644
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-09 Score=75.67 Aligned_cols=68 Identities=28% Similarity=0.406 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
++..|++++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777653
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=87.43 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAVS 355 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 355 (543)
++.|.-++..|+|.+|...|..-++..|++ +.++++||.+++.+|+|+.|...|..+++-.|++ +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 457888999999999999999999999987 6899999999999999999999999999988775 5889999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
...+|+.++|...|+++++..|+.+.+...
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999887643
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.5e-09 Score=82.27 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=74.3
Q ss_pred hhccCCCCceeeeeeCCCCccccchhHh-H--HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEEE--CCeE
Q 009096 420 KAAISSPGVSLVHFKEASSEKCEEISPF-V--NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYK--NGEK 491 (543)
Q Consensus 420 ~~~i~~~~~~lv~f~~~~c~~c~~~~p~-l--~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~ 491 (543)
..+...+++++|+|+++||++|+.+... | +++.+.+. +..++.+|++ +...++..|++.++|+++++. +|++
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444568899999999999999998763 3 33433332 5788888887 466899999999999999995 7999
Q ss_pred EEEEcCC-CHHHHHHHHHhcC
Q 009096 492 LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.++.|. +++++...|++..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 9999999 9999999988753
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=94.25 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=108.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
-..+...++++.|+..+++..+.+|+.... ++.++...++-.+|++.+.++++..|.+...+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~~~---------------LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVAVL---------------LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHHHH---------------HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344556789999999999999999874322 68888889999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+..+...++++.|+...++++.+.|++.+.|+.|+.+|..+|++++|+..++.+=-.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999999999877644333
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.3e-09 Score=92.79 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=93.0
Q ss_pred cCHHHHHHHhhHH-HhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhH
Q 009096 46 VDAEEVKRAGNEM-YRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---YNRA 118 (543)
Q Consensus 46 ~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (543)
.+...++..|..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3567888888887 66899999999999999999988 589999999999999999999999999998887 4788
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
++.+|.++..+|++++|...|+++++ .|+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999998887 44443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-07 Score=81.94 Aligned_cols=181 Identities=16% Similarity=0.096 Sum_probs=140.4
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
++.++..++..|...++.|++++|+..|+.+....|..+.... +.+.++.++++.+++++|+...++-+.+.|.+++
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~q---a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQ---AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3445777888899999999999999999999998888866533 3445588999999999999999999999999887
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHhccCCCCh-----------------hHHhHHHHHH
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSS--------RRYSEACSAYGEGLKYDSYNS-----------------ILYCNRAICW 322 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~ 322 (543)
+-.++. -.|.+++.. .-..+|+..|+..++..|++. ..-...|..|
T Consensus 107 ~dY~~Y---------lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 107 ADYAYY---------LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred hhHHHH---------HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655432 245544332 234678889999999999872 2234468889
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 323 SKMGLWENSIEDCNVALRIQPNY---TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-.-.-.|+++
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999987764 47899999999999999999886554444445554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-07 Score=95.58 Aligned_cols=225 Identities=15% Similarity=0.039 Sum_probs=171.3
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHH
Q 009096 96 GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKT 175 (543)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (543)
++-.+..+.|++.+..+|+....|...-......++.++|.+..++|+...++.+.... +..|...-.....-|.-+.
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEK--LNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEK--LNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHH--HHHHHHHHhHHHhhCcHHH
Confidence 33445677888889999999999999988999999999999999999884443322211 2223333333344456677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
..+.|++|.+... .-.+|..+..+|...+.+++|.++|+..++........ |...+..++..++-+.|...+
T Consensus 1516 l~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v------W~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV------WIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH------HHHHHHHHhcccHHHHHHHHH
Confidence 7788888887742 24667778888999999999999999888877755443 444488888888888899999
Q ss_pred HHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHH
Q 009096 256 EKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333 (543)
Q Consensus 256 ~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 333 (543)
.+|++--|. +.+.. ...|+.-++.|+-+.+..+|+..+..+|...++|.-+...-.+.|+.+-+..
T Consensus 1588 ~rAL~~lPk~eHv~~I------------skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFI------------SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHhhcchhhhHHHH------------HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence 999988887 33332 2257788888999999999999999899989999988888888899999999
Q ss_pred HHHHHHhhC
Q 009096 334 DCNVALRIQ 342 (543)
Q Consensus 334 ~~~~al~~~ 342 (543)
.|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 999988764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-06 Score=75.74 Aligned_cols=227 Identities=24% Similarity=0.225 Sum_probs=165.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 95 LGRLTEAVSDCEEAVRLDPGY--NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
.+.+..+...+...+...+.. .......+..+...+++..+...+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 85 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA------------------------------ 85 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHH------------------------------
Confidence 355666666666666665552 455555555555555555555544332
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH-HHHhhcChHH
Q 009096 173 WKTVLRETDAAIAI-GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM-FNISELRFEN 250 (543)
Q Consensus 173 ~~~A~~~~~~~l~~-~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~g~~~~ 250 (543)
+.. ........+...+..+...+++..++..+..++...+......... +. ++...|++++
T Consensus 86 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 148 (291)
T COG0457 86 -----------LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALL------ALGALYELGDYEE 148 (291)
T ss_pred -----------HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHH------HHHHHHHcCCHHH
Confidence 220 1112245566667777777777778888777777666652222222 34 7889999999
Q ss_pred HHHHHHHHhhcCCC-cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-ChhHHhHHHHHHHHccCH
Q 009096 251 AVSSAEKAGLLDYS-NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-NSILYCNRAICWSKMGLW 328 (543)
Q Consensus 251 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 328 (543)
|...+.+++...|. ...... ....+..+...++++.|+..+.+++...+. ....+..++.++...+++
T Consensus 149 a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 149 ALELYEKALELDPELNELAEA----------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHHHHHHhcCCCccchHHH----------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 99999999887663 111111 123455578899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+.|+..+..++...|.....+..++..+...++++++...+.+++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999998888888998888778899999999999999997
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.91 E-value=9e-09 Score=73.89 Aligned_cols=67 Identities=25% Similarity=0.331 Sum_probs=48.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
..+|...+++++|++++++++.++|+++..++.+|.++..+|++++|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777777777776666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-09 Score=74.09 Aligned_cols=65 Identities=29% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 323 SKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
...|++++|+..|++++..+|++.++++.+|.++.+.|++++|...+++++..+|+++.++..+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45677777777777777777777777777777777777777777777777777777766665544
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-08 Score=75.54 Aligned_cols=94 Identities=26% Similarity=0.218 Sum_probs=84.5
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---YNRAHQRL 122 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 122 (543)
.++|..|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975443 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHhCCHHHHHHHhcCC
Q 009096 123 ASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a 142 (543)
+.++...|++++|+..+-.+
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999987443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-08 Score=81.08 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=94.1
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHH-HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEI-ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
|.-++..|+|++|...|..++.+.|....- ...+ +.+.|.++++++.++.|+..+.++|+++|.+..++..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIl--------y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R 173 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSIL--------YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER 173 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHH--------HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence 888999999999999999999999876542 2222 3568999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+|.+|.++..|++|++.|+++++.+|....+.-..++
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999999999999987655443333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-06 Score=77.78 Aligned_cols=269 Identities=14% Similarity=0.027 Sum_probs=180.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHH--HHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAAT--LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+-.+...++.....|++++|.+-|+.++. +|+. ..+-.+|.. -..+|..+.|..+-+.+-...|..+.++...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 44556667777888999999988887764 3422 122222222 2347888899999999988889888888887778
Q ss_pred HHHhCCHHHHHHHhcCCCC--CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH--HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
.+..|+++.|++..+.... ...+..... .. ..++...+...
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR--------------------~r----------------AvLLtAkA~s~- 240 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAER--------------------SR----------------AVLLTAKAMSL- 240 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHH--------------------HH----------------HHHHHHHHHHH-
Confidence 8888888888887754432 000000000 00 00111111111
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
-..+...|...-..+.++.|+........ +..++..|+..++-..++.+.+..|....
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~A------Aralf~d~~~rKg~~ilE~aWK~ePHP~i---------------- 298 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVA------ARALFRDGNLRKGSKILETAWKAEPHPDI---------------- 298 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHH------HHHHHhccchhhhhhHHHHHHhcCCChHH----------------
Confidence 12235667777777888888875544333 78888889999999999988888876432
Q ss_pred HHHHHHhcCCHHHHHHHHHH---HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-
Q 009096 284 RGNNLFSSRRYSEACSAYGE---GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL- 359 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 359 (543)
+..|....--+.++.-+++ ...+.|++.+.....+..-+.-|++..|..--+.+....|. ..++..++.+....
T Consensus 299 -a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAet 376 (531)
T COG3898 299 -ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAET 376 (531)
T ss_pred -HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhcc
Confidence 2233333333344444443 44568999999999999999999999999999999999887 45677788887655
Q ss_pred cCHHHHHHHHHHHHhcCCCCh
Q 009096 360 GRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~ 380 (543)
|+-.+...++-++++- |.+|
T Consensus 377 GDqg~vR~wlAqav~A-PrdP 396 (531)
T COG3898 377 GDQGKVRQWLAQAVKA-PRDP 396 (531)
T ss_pred CchHHHHHHHHHHhcC-CCCC
Confidence 9999999998888864 4443
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=82.54 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc---------------------------CcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE---------------------------ESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~---------------------------~~~~~~~~~ 475 (543)
.++++++.||+.||++|....|.|.++.+++.+ +.++.|+.+ ....++..|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 457999999999999999999999999999964 777777541 123577889
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP 498 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~ 498 (543)
++.++|+++++ ++|+++.+..|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999888 489999998874
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=102.47 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=83.9
Q ss_pred EEeehhhhhhhccCCCC--ceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeCcCc----HHHHHHcCCCccc
Q 009096 411 EEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDVEES----LAIAKSEGVRTVP 481 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~--~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~~~~----~~~~~~~~v~~~P 481 (543)
..+++....++.+..++ ++++|||++||-.|+++++.. .+...+.+++++.+.|.+++ .++-++||+.++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 44555556677776555 999999999999999999975 35556778999999999864 5678999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++++|. +|++...+.|+ +.+.+.+++++..
T Consensus 537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999998 89888889999 9999999998753
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.6e-09 Score=86.17 Aligned_cols=81 Identities=10% Similarity=0.068 Sum_probs=62.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEE------EEEeCcC-----------------------------cHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF------FKVDVEE-----------------------------SLA 470 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~------~~~d~~~-----------------------------~~~ 470 (543)
+++++|.|||+||++|+.-+|.++++.++ ++.+ ..||.++ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 78999999999999999999999999753 2222 3344432 335
Q ss_pred HHHHcCCCcccEE-EEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 471 IAKSEGVRTVPTF-KIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 471 ~~~~~~v~~~Pt~-~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
++..|||.++|+. +++ ++|+++.++.|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 7789999999855 444 699999999999 8888877544
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-07 Score=87.49 Aligned_cols=168 Identities=11% Similarity=-0.002 Sum_probs=129.4
Q ss_pred HHHHHHHHHccC---hhHHHHHhhcCC---CCCCCCChhHHHHHHHHHHHHHHH----hhcChHHHHHHHHHHhhcCCCc
Q 009096 196 ACKAEAHLKLHQ---NEDADSCLSNMP---KFEHYSPPSQVKFLVWLLKLMFNI----SELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 196 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~ 265 (543)
+.+|......+. .+.|+.+|.+++ .++|+....+..+ ++......+. ......+|....+++++++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~l-A~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLL-AECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 455666655544 466888999999 8888876554444 2222222111 1234568899999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+... +|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-
T Consensus 338 a~a~~~------------~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAI------------MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHH------------HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 998643 68889999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHH-HHHccCHHHHHHHHHHHHhcC
Q 009096 346 TKALLRRAVS-NEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 346 ~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+-...-.+ .+-....++|++.|-+--+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHHhhccccc
Confidence 7665544444 455667889999887654443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=72.64 Aligned_cols=70 Identities=27% Similarity=0.427 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
..++...++|++|++++++++..+|+++..+..+|.++..+|++++|+..|+++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999888766554
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=88.70 Aligned_cols=102 Identities=28% Similarity=0.401 Sum_probs=80.5
Q ss_pred CCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+.+.+.|.+++.. ...|+|.||.+.++.|..|...|..|+.+||.++|++|..+..+ ....|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 556777777777777754 34799999999999999999999999999999999999988765 67899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|++|..+..++|. +.+.|+.+|.++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999988873 566788888775
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=84.83 Aligned_cols=112 Identities=26% Similarity=0.436 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+...|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++++++.+...+.+++++.|+...+++.+|.+...
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 33466799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcC-----CCChHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRREL-----PGDNEVAESLHNAQ 390 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~ 390 (543)
...+++|+..+.+|..+. |.-.++...|..+.
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999997653 22345555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-06 Score=73.45 Aligned_cols=197 Identities=15% Similarity=0.040 Sum_probs=130.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---HHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR---AHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (543)
.+..|+..|...++.|+|++|+..|+++....|.. ..+...++.++++.+++++|+...++-+.+.|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 57899999999999999999999999999988876 578899999999999999999999999999998765 455
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP--QLVACK 198 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~~~ 198 (543)
..|.+++. ..-. .+ ....-...|+..++..+...|++.- .+...+
T Consensus 113 lkgLs~~~------------~i~~-~~--------------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 113 LKGLSYFF------------QIDD-VT--------------------RDQSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHHhc------------cCCc-cc--------------------cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 55555222 1111 00 1111234567777888888776521 111111
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
..+-..+..+ -+..|..|.+.|.+..|+.-++.+++..|+.......+
T Consensus 160 ~~~~d~LA~~--------------------------Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL------ 207 (254)
T COG4105 160 VKLNDALAGH--------------------------EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREAL------ 207 (254)
T ss_pred HHHHHHHHHH--------------------------HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHH------
Confidence 1111111000 01127778888888888888888888777766554443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..+..+|..+|-.++|...-.-.-...|++
T Consensus 208 ---~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 208 ---ARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred ---HHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 236777788887777765543333333444
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=73.49 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=56.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+|+.++||+++. |+. +.|.++++|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 457999999999999998876 368889999987654 4567999999999874 654 67889999998
Q ss_pred HHH
Q 009096 506 SAN 508 (543)
Q Consensus 506 ~~~ 508 (543)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.2e-06 Score=73.80 Aligned_cols=237 Identities=26% Similarity=0.245 Sum_probs=174.3
Q ss_pred HHHHHhhHHHh-cCCHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHh--cCCCChhHHHHHHH
Q 009096 50 EVKRAGNEMYR-KGNFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVR--LDPGYNRAHQRLAS 124 (543)
Q Consensus 50 ~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~ 124 (543)
.....+..... .+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (291)
T COG0457 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGL 103 (291)
T ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 33333333333 57888899999999988876 378889999999999999999999999997 67888888999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE-AHL 203 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~-~~~ 203 (543)
.+...+++..++..+.+++. ..+.. .......+. ++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 104 LLEALGKYEEALELLEKALA-----------------------------------------LDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHc-----------------------------------------CCCCc-chHHHHHHHHHHH
Confidence 99998888888887766654 11111 111111222 566
Q ss_pred HccChhHHHHHhhcCCCCCCC-CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc-HHHHHHHHhHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHY-SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN-VEIASVLTNVKMVVRA 281 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~ 281 (543)
..|+++.|...+.+++...|. ... .......+..+...+++++|+..+.+++...+.. ....
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 205 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNEL----AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL------------ 205 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccch----HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH------------
Confidence 666666666666666554442 111 1122222445677889999999999999888883 4432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
..++..+...+++++|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 346888888999999999999999999987778888888888777899999999999999887
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-08 Score=80.25 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL----------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR-- 361 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 361 (543)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++++.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999887744 5778889999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 362 ---------WSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 362 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|++|..+|++|...+|++...+..|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 89999999999999999999988887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.4e-08 Score=95.20 Aligned_cols=145 Identities=13% Similarity=-0.051 Sum_probs=86.4
Q ss_pred HHhcCCcchhh--HHhHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC--------CHHHHHHHhc
Q 009096 74 AISMSPENAAY--RSNRAATLTALGR---LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG--------QVENARHHLC 140 (543)
Q Consensus 74 al~~~p~~~~~--~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~ 140 (543)
+...-|.+..+ ++..|.-+...++ ..+|+.+|+++++++|+++.++..++.++.... +...+.....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33455555444 4556666665544 678888888888888888888887777765542 2334455554
Q ss_pred CCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC
Q 009096 141 FPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219 (543)
Q Consensus 141 ~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 219 (543)
+++. ..++.. ...+..++......|++++|...+++++.++|. ...|..+|.++...|++++|+..|++++
T Consensus 409 ~a~al~~~~~~------~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 409 NIVALPELNVL------PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HhhhcccCcCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4333 111111 011233344444456666666666677777662 4566666777777777777777777777
Q ss_pred CCCCCCC
Q 009096 220 KFEHYSP 226 (543)
Q Consensus 220 ~~~~~~~ 226 (543)
.++|.++
T Consensus 481 ~L~P~~p 487 (517)
T PRK10153 481 NLRPGEN 487 (517)
T ss_pred hcCCCCc
Confidence 7776664
|
|
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-09 Score=87.59 Aligned_cols=87 Identities=20% Similarity=0.372 Sum_probs=73.3
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCC------c
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVR------T 479 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~------~ 479 (543)
..-+.....+++.+.. ...++|.|++.|.+.|...+|.+.+++.+|. +++|.+||+...+..+++|+|. .
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 3344455566665544 4588999999999999999999999999994 4999999999999999999986 5
Q ss_pred ccEEEEEECCeEEEEEc
Q 009096 480 VPTFKIYKNGEKLKEMI 496 (543)
Q Consensus 480 ~Pt~~~~~~g~~~~~~~ 496 (543)
.||+++|++|+++.|..
T Consensus 206 LPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 206 LPTYILFQKGKEVSRRP 222 (265)
T ss_pred CCeEEEEccchhhhcCc
Confidence 68999999999998754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=74.65 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=178.6
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
+.+|.. +.++-.|+|..++..-.+.-... ........+.+.|+.+|++...+......- .....+...++.....
T Consensus 10 d~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 10 DELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLEL 84 (299)
T ss_pred hhHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhC
Confidence 344443 44556799999888777764443 677888899999999999876655544332 1122344444554444
Q ss_pred hCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 009096 129 LGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ 207 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~ 207 (543)
-++.++-+.-+.+.+. ..+... ......-+.++...+++++|+........ .++...-..++.++.+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn------~i~~l~aa~i~~~~~~~deAl~~~~~~~~------lE~~Al~VqI~lk~~r 152 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSN------LIDLLLAAIIYMHDGDFDEALKALHLGEN------LEAAALNVQILLKMHR 152 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchh------HHHHHHhhHHhhcCCChHHHHHHHhccch------HHHHHHHHHHHHHHHH
Confidence 4444433333322221 111111 11234456778889999999988876332 3555566789999999
Q ss_pred hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH
Q 009096 208 NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN 287 (543)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~ 287 (543)
++-|...++++...+.+..-.+. ..+|+. +.-..+...+|.-.|++.-...|..+... ..++.+
T Consensus 153 ~d~A~~~lk~mq~ided~tLtQL-A~awv~---la~ggek~qdAfyifeE~s~k~~~T~~ll------------nG~Av~ 216 (299)
T KOG3081|consen 153 FDLAEKELKKMQQIDEDATLTQL-AQAWVK---LATGGEKIQDAFYIFEELSEKTPPTPLLL------------NGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHccchHHHHHHH-HHHHHH---HhccchhhhhHHHHHHHHhcccCCChHHH------------ccHHHH
Confidence 99999999999988776522211 123322 12233568899999999887666555542 237889
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH-HHHHHHHhhCCCCHH
Q 009096 288 LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI-EDCNVALRIQPNYTK 347 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 347 (543)
.+.+++|++|...++.++..++++++++.|+..+-...|...++. +...+....+|+++-
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999999999999999876665 455566666787764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=71.68 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT----KALLRRAVSNEK 358 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~ 358 (543)
..|.++...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+.. .++..+|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999965543 678999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCC
Q 009096 359 LGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~ 378 (543)
+|+-+.|...|+.+-++...
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999888654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-06 Score=83.33 Aligned_cols=291 Identities=14% Similarity=0.084 Sum_probs=183.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHH
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (543)
....+++.+|+....+.++..|+...+....|.+++++|+.++|..+++..-...+++...+..+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999999999999999999999999988887777778888888889999999999999999
Q ss_pred HhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH------
Q 009096 138 HLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED------ 210 (543)
Q Consensus 138 ~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~------ 210 (543)
+|++++. .|. .. ..+.+-.+|.+.++|.+-.+.--+..+..|...-..|.....++......++
T Consensus 99 ~Ye~~~~~~P~-ee--------ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 99 LYERANQKYPS-EE--------LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHhhCCc-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999987 343 21 1333444555556665544444444556677655556655555555444433
Q ss_pred ---HHHHhhcCCCCC-CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH-hhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 211 ---ADSCLSNMPKFE-HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA-GLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 211 ---A~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
|....++.++.. +-... .....+ -.++..+|++++|.+.+..- .+..+........ ..+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~--aE~~Ly---l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~-----------~~~ 233 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESE--AEIILY---LLILELQGKYQEALEFLAITLAEKLTSANLYLEN-----------KKL 233 (932)
T ss_pred HHHHHHHHHHHhccCCccchH--HHHHHH---HHHHHhcccHHHHHHHHHHHHHHhccccchHHHH-----------HHH
Confidence 444555666555 22211 111111 34677788999999988433 2333332222111 135
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCChhHHhH-------------HHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHH
Q 009096 286 NNLFSSRRYSEACSAYGEGLKYDSYNSILYCN-------------RAICWSKMGLWENSIEDCNVALRIQPNYT-KALLR 351 (543)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~ 351 (543)
..+...++|.+-.+...+++...+++...+.. .+..+...+..+..++..++.+.-+...+ -|++.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le 313 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE 313 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH
Confidence 66677788888888888888888876222111 12222333445555555555555433333 33444
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al 373 (543)
+-.-+...|+.+++...|-+-+
T Consensus 314 l~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred HHHHhcccCChHHHHHHHHHHh
Confidence 4444456677777666554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=73.58 Aligned_cols=94 Identities=18% Similarity=0.045 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPN---YTKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 354 (543)
+++.|.++-..|+.++|+.+|++++....+. ..++..+|.++..+|++++|+..+++++...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 4568999999999999999999999975444 578999999999999999999999999999898 7788899999
Q ss_pred HHHHccCHHHHHHHHHHHHh
Q 009096 355 SNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~ 374 (543)
++...|++++|+..+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988775
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-09 Score=101.67 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=76.5
Q ss_pred ehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---C-eEEEEEeCc--CcHHHHHHcCCCcccEEEEE
Q 009096 414 SSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---Y-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 414 ~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+.+.|..++- +.+..+|.|+++|||+|+.+.|.+.+++++.. . +.++.|||. .|..+|+.|+|.++||+.+|
T Consensus 44 Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf 123 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYF 123 (606)
T ss_pred eehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeec
Confidence 44566666664 45589999999999999999999999998773 3 889999995 67899999999999999999
Q ss_pred ECC-eE---EEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNG-EK---LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g-~~---~~~~~g~-~~~~~~~~~~~~~ 511 (543)
.-+ +. =..+.|. .+.++++.+.+.+
T Consensus 124 ~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 124 PPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 622 11 1234465 6888888887654
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=79.70 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=53.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEe-Cc--C-----------------cHHHHHHcCCCcccEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVD-VE--E-----------------SLAIAKSEGVRTVPTF 483 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d-~~--~-----------------~~~~~~~~~v~~~Pt~ 483 (543)
.++++++.||++||++|+...|.++++.+++.+ +.++.+. .+ + ..+++..|+|.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 367999999999999999999999999887754 6555552 11 1 1357778888889988
Q ss_pred EEEE-CCeEEEE
Q 009096 484 KIYK-NGEKLKE 494 (543)
Q Consensus 484 ~~~~-~g~~~~~ 494 (543)
+++. +|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 8875 7887664
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=86.19 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--------------------CcHHHHHHcCCCcccEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--------------------ESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--------------------~~~~~~~~~~v~~~Pt~~ 484 (543)
.++++++.||++||++|+...|.+.++.+++ ++.++.+..+ ...++++.|+|.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4678999999999999999999999988764 3333333311 135788999999999876
Q ss_pred EE-ECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 485 IY-KNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 485 ~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
++ ++|+++.+....+.+.++++++.....
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l~~~ 181 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEADREG 181 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHHHcC
Confidence 66 599988763223778888888865433
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.1e-08 Score=83.31 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=65.8
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhC--CCeEEEEEeCcCc---------------------HHHHHHcCCC--
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES---------------------LAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~---------------------~~~~~~~~v~-- 478 (543)
.+++++|.||++ ||++|+...|.+.++.+++ .++.++.+..+.. ..++++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999998875 3477777765532 4688999998
Q ss_pred -------cccEEEEE-ECCeEEEEEcCC-C--HHHHHHH
Q 009096 479 -------TVPTFKIY-KNGEKLKEMINP-S--HQFLEDS 506 (543)
Q Consensus 479 -------~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~ 506 (543)
++|+++++ ++|+++.+..|. + ..++++.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~~ 145 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEAV 145 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhhc
Confidence 99987666 599999999998 4 4445443
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=87.45 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=67.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-----------CcHHHHHHcCC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-----------ESLAIAKSEGV-------------- 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-----------~~~~~~~~~~v-------------- 477 (543)
.++++++.||++||++|+...|.|.++.++|. ++.++.|+++ +....++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 36799999999999999999999999999995 4888888763 12233444443
Q ss_pred ----------------------Cccc----EEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 478 ----------------------RTVP----TFKIYKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 478 ----------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+| |+++-++|+++.++.|. +.+++++.|++++..
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 1223 44555799999999998 888999999876543
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=96.32 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=87.3
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+...+...-.......+++.|++|||++|+.+.|.+++++..+. .+.+..+|++....++..++|.++||+++|
T Consensus 146 v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 146 VFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred eEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 34444444444455668899999999999999999999999998773 499999999999999999999999999999
Q ss_pred ECCeE-EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEK-LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~-~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+|.. .....|. +.+.+..++++.....
T Consensus 226 ~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 226 PPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 98887 5556666 9999999999887664
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-08 Score=93.65 Aligned_cols=117 Identities=21% Similarity=0.442 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.+.+...+..+.|+.|+..|.++|+++|+++..+-+++.++.+.+++..|+..+.++++++|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 35578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
++.+|...|++...+.|+++.+...+..+.......+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888776643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=92.39 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA---LLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+|+++..|+++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555533 555555555555555555555555554
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=79.83 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=53.7
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCcH-HHHHHcCCCcccEEEEEE-CCeEE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEESL-AIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~~-~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
...+...+++++++|+++||++|+.+...+ .++.+.. .++..+.++.+... ... ..| .++||++|+. +|+++
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCCc
Confidence 344456789999999999999999998854 2333333 24555566654221 111 234 6899999995 99999
Q ss_pred EEEcCC
Q 009096 493 KEMINP 498 (543)
Q Consensus 493 ~~~~g~ 498 (543)
.++.|.
T Consensus 94 ~~i~Gy 99 (130)
T cd02960 94 ADITGR 99 (130)
T ss_pred cccccc
Confidence 999984
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-06 Score=90.11 Aligned_cols=236 Identities=11% Similarity=-0.028 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----hhHHHHHHHHHHHhCCHHHHHHH
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL-DPGY----NRAHQRLASLYFRLGQVENARHH 138 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~ 138 (543)
-.+..+.|.+.+..+|+....|...-.-++++++.++|.+.+++|+.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344567788899999999999999999999999999999999999964 3432 34555555555566766777788
Q ss_pred hcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 139 LCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
|++|.+-.++. ..+..+...|...+.+++|.++++..++... ....+|..++..++..++-+.|...+.++
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88877633332 3467788899999999999999999999876 44788999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~ 298 (543)
++.-|...... ..-.-|++.++.|+.+.+...|+..+.-+|.-.+.|..+ ...-.+.|+.+-+.
T Consensus 1591 L~~lPk~eHv~----~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1591 LKSLPKQEHVE----FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIKHGDIKYVR 1654 (1710)
T ss_pred HhhcchhhhHH----HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHccCCHHHHH
Confidence 99999842211 111228899999999999999999999999999999765 55667889999999
Q ss_pred HHHHHHhccC--CCChhHHhHHHHHHHH
Q 009096 299 SAYGEGLKYD--SYNSILYCNRAICWSK 324 (543)
Q Consensus 299 ~~~~~al~~~--p~~~~~~~~la~~~~~ 324 (543)
.+|++++.+. |.....++..=.-|.+
T Consensus 1655 ~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 9999999874 4445555544444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-05 Score=71.68 Aligned_cols=269 Identities=17% Similarity=0.097 Sum_probs=193.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 88 RAATLTALGRLTEAVSDCEEAVRLDPGYN--RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
.|.+-...|+-..|.+.-.++-++-..+. -++..-++.-.-.|+++.|.+-|+.++..|+.... . +-.+-.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll----G---LRgLyl 162 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLL----G---LRGLYL 162 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHH----h---HHHHHH
Confidence 45666667899999998888875544443 44555577888889999999999998865544321 1 112222
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH-h
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI-S 244 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~ 244 (543)
.....|+.+.|..+-+++-...|.- +......-...+..|+++.|+++.+......--.........+.+.-+.... -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999998877 5555666677889999999999998665432222222222222222222222 2
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.-+...|...-.++.++.|+......+ -+..+++.|+..++-.+++.+.+..|+ +. ++.+|..
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~------------AAralf~d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ 304 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVV------------AARALFRDGNLRKGSKILETAWKAEPH-PD----IALLYVR 304 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHH------------HHHHHHhccchhhhhhHHHHHHhcCCC-hH----HHHHHHH
Confidence 345788999999999999998776432 578899999999999999999999886 33 3444444
Q ss_pred ccCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 325 MGLWENSIEDCNVA---LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 325 ~g~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..--+.++.-++++ ..+.|++.+..+..+..-+..|++..|..--+.+....|....
T Consensus 305 ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 305 ARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 44444455555544 4568999999999999999999999999999999999986544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-07 Score=81.55 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=120.9
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------h
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY------N 116 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 116 (543)
-+++.+++..+...-++.+++.+.+..+.+.... ......+|.++..++.++++++.|++|+....++ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4577888888888888999999888887763222 3567779999999999999999999999875443 3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC---
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS--- 190 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--- 190 (543)
.++..||.++..+.++++|+-+..++.. ...-..+..-.....++.++..++.+|..-.|.++.+++.++.-..
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 5678899999999999999998887765 1121223333344456667777777777777777777766553111
Q ss_pred --CHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 191 --SPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 191 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
.......+|.+|...|+.+.|..-|+.+..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 122233456666666666666666666544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-06 Score=79.61 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=117.3
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------ChhHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA-VRLDPG--------YNRAH 119 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~ 119 (543)
+........+.+..+...+....+.+..+..+.+.+.+..+..++..|++.+|.+.+... +...|. .-..|
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~ 286 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN 286 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence 344455566677888888888888888887788889999999999999999999887653 222232 12357
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCC----------CCCh-HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGH----------HPDP-NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
.++|.+++++|.|.-+..+|.++++ .+.+ .....-...+..++.|..+...|+.-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 8899999999999999999988884 1111 1122334567789999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHH
Q 009096 189 DSSPQLVACKAEAHLK 204 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~ 204 (543)
.+ |.+|..+++|...
T Consensus 367 ~n-PrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 RN-PRLWLRLAECCIM 381 (696)
T ss_pred cC-cHHHHHHHHHHHH
Confidence 66 7888888887653
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=85.09 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=67.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc--------Cc---HHHH-HHcC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE--------ES---LAIA-KSEG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~--------~~---~~~~-~~~~-------------- 476 (543)
.+++++|.||++||++|....|.|.++.++|. ++.++.|+++ .. ...+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 35799999999999999999999999999995 4888888863 11 1121 2222
Q ss_pred --------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 477 --------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 477 --------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|...||.+++ ++|+++.++.|. ++++++..|++++.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1234776666 699999999998 99999999998764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-05 Score=77.78 Aligned_cols=306 Identities=14% Similarity=0.022 Sum_probs=178.6
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHH--------HHh---cCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDK--------AIS---MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~--------al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
...|-++|....+..+.+-|.-++-. |+. .+|+ +.-...|..-.++|..++|+..|++.-.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 34677788877777777766655432 222 2333 2333456677788888888888887654
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH----------HHc
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAA----------IAI 186 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~ 186 (543)
+-.|-.+|...|.+++|.+.-+.-- ....-..+++.+..+...+|.+.|+++|+++ +..
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~D---------RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKD---------RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhcc---------ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 3345566677777777766543211 1111223566666667777777777777654 222
Q ss_pred CC---------CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC--------CCCh-------hHHHHHHHHHHHHHH
Q 009096 187 GV---------DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH--------YSPP-------SQVKFLVWLLKLMFN 242 (543)
Q Consensus 187 ~p---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~a~~~ 242 (543)
+| ...+.+|...|..+...|+.+.|+.+|..+-.... .... ..-...+.+.+|+.|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 22 12356677778888888888888888876643211 0000 001123456669999
Q ss_pred HhhcChHHHHHHHHHHh------hcCCCcHHHHHHHHhHH---HHHHHHHHHHHHHhcC-CHHHHHHHHHHHh-------
Q 009096 243 ISELRFENAVSSAEKAG------LLDYSNVEIASVLTNVK---MVVRARTRGNNLFSSR-RYSEACSAYGEGL------- 305 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~---~~~~~~~~g~~~~~~~-~~~~A~~~~~~al------- 305 (543)
...|++.+|+..|.++- ++..++.---. +.++. ....+...+..|...| .+..|+.+|.+|-
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~-L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDR-LANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence 99999999999888764 33222211111 11110 0011111222333333 4444444443321
Q ss_pred ----------------ccCC-CChhHHhHHHHHHHHccCHHHHHHHH------HHHHhhC----------------CC--
Q 009096 306 ----------------KYDS-YNSILYCNRAICWSKMGLWENSIEDC------NVALRIQ----------------PN-- 344 (543)
Q Consensus 306 ----------------~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~----------------p~-- 344 (543)
.++| .++.++..-+..+....+|++|...+ +.|+++. |.
T Consensus 1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd 1136 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD 1136 (1416)
T ss_pred HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC
Confidence 1234 35677777788888888999988764 4444431 21
Q ss_pred -------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 345 -------YTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 345 -------~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
....+-.+|.++.++|.|..|-+-|.+|=
T Consensus 1137 ~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1137 DMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred CCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 12568899999999999999999888764
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=73.76 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=73.7
Q ss_pred hhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcC----------------cHHHHHHcCC
Q 009096 418 KFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEE----------------SLAIAKSEGV 477 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~----------------~~~~~~~~~v 477 (543)
....+...++-.++.|.++.|+.|..+...+ .++.+-+ +++.++.+|+.. .+++++.|+|
T Consensus 34 d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 34 DNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred HHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3445556678899999999999999998865 3444333 447777777653 2589999999
Q ss_pred CcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 478 RTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 478 ~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+++||+++|+ +|+.+..+.|+ +++++...++-.
T Consensus 114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 9999999996 88999999999 999998888743
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=82.71 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=91.6
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY---NRAHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (543)
+++..|..|..++..|+|.+|...|..-++..|++ +.++|.||.+++.+|+|++|...|..+++..|+. +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44559999999999999999999999999999986 6899999999999999999999999999988775 67899
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
.+|.+...+|+.++|...|+++++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999987
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-07 Score=76.54 Aligned_cols=103 Identities=29% Similarity=0.369 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc--------CCCC----------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKY--------DSYN----------SILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+...|+-++..|+|.+|...|..|+.. .|.+ ...+.|.+.|+...|+|-++++.+..++...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999998743 3443 4678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
|++..+++.+|.+....=+..+|...|.++++++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999865543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-07 Score=86.74 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=105.0
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.+...+...++++.|+..+++..+.+|+. ...++.++...++..+|+..+++++...|.+.....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~------ 238 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN------ 238 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 34556667789999999999999888763 222388888899999999999999999999976643
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 339 (543)
..+..+...++++.|+.+.+++++..|++...|+.|+.+|..+|++++|+-.++.+=
T Consensus 239 ------~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 ------LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 368889999999999999999999999999999999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-08 Score=79.20 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc---CCCcccEEEEEE-CCeEEEEEcCCCHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE---GVRTVPTFKIYK-NGEKLKEMINPSHQ 501 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~~~g~~~~ 501 (543)
.+..++.|..+|||.|...-|.+.++++..|++.+-.+..|++.++.++| |..++||++++. +|+++.++ |.-|+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-gerP~ 119 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GERPK 119 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS-H
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCCCH
Confidence 34567778899999999999999999999999888888888888777665 788999999995 67888877 55556
Q ss_pred HHHHHHHhc
Q 009096 502 FLEDSANLA 510 (543)
Q Consensus 502 ~~~~~~~~~ 510 (543)
.++++++++
T Consensus 120 ~~~~~~~~~ 128 (129)
T PF14595_consen 120 EVQELVDEY 128 (129)
T ss_dssp HHH------
T ss_pred HHhhccccC
Confidence 666666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=88.83 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=68.3
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh---HHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---RSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
.....+|.++++++++|..++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 66 ~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 66 DGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3345789999999999999999999999999999999999999854 999999999999999999999999997
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=75.52 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=67.9
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEEE-CC--
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYK-NG-- 489 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~-~g-- 489 (543)
...+...++.++|+|+++||+.|+.+...+ .++.+-.. ++.++.+|++ +...++..|++.++|+++++. +|
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~ 99 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQ 99 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCc
Confidence 344445678999999999999999987642 23333232 5888888876 456799999999999999994 55
Q ss_pred ---eEEEEEcCC-CHHHHHHHH
Q 009096 490 ---EKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 490 ---~~~~~~~g~-~~~~~~~~~ 507 (543)
+.+.++.|. +++++.+.+
T Consensus 100 ~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 100 RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eeEEEeccccCCCCHHHHHHhh
Confidence 357788898 999998876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=68.94 Aligned_cols=95 Identities=27% Similarity=0.362 Sum_probs=86.5
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASL 125 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 125 (543)
.+-..|..+...|+.+.|++.|.+++.+-|..+.+|.+++..+.-+|+.++|+..+.+++++.... -.++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999987543 3578999999
Q ss_pred HHHhCCHHHHHHHhcCCCC
Q 009096 126 YFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~ 144 (543)
|..+|+.+.|...|+.+.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHhCchHHHHHhHHHHHH
Confidence 9999999999999977754
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.4e-08 Score=82.28 Aligned_cols=99 Identities=27% Similarity=0.399 Sum_probs=94.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
..++.+...|+.++...+|+.|+.+|.++|.++|..+..+.+.+.||+++.+++.+....+++++++|+...+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC
Q 009096 126 YFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~ 144 (543)
......|++|+..+.++..
T Consensus 88 ~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHhhccccHHHHHHHHHHH
Confidence 9999999999999988743
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00017 Score=72.28 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=138.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHH----------HhcCCc----------chhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKA----------ISMSPE----------NAAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
..+++.|..+...++.+.|+++|+++ +.-+|. ++..|...|..+...|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 36788888888899999999999875 333443 4567777888899999999999999887
Q ss_pred Hhc---------------------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-------CCChHHHhHHHHH---
Q 009096 109 VRL---------------------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-------HPDPNELLKLQSF--- 157 (543)
Q Consensus 109 l~~---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~~~--- 157 (543)
-.. ...+..+-+.+|+.|...|++.+|+.+|.++-. ...+.....+..+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 432 245677889999999999999999999887643 1111111111111
Q ss_pred ---HHHHHHHHhhhhcC-CHHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 158 ---EKHLNRCAESRKIG-DWKTVLRETDAA-----------------------IAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 158 ---~~~~~~~~~~~~~~-~~~~A~~~~~~~-----------------------l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
......+..|...| +...|...|.++ -.++|+..+.++..-+..+....+|++
T Consensus 1019 s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred cCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 11122233333333 444444444332 123677788888888888888888988
Q ss_pred HHHHhhcC------CCC----------------CC---CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 009096 211 ADSCLSNM------PKF----------------EH---YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA 258 (543)
Q Consensus 211 A~~~~~~~------~~~----------------~~---~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 258 (543)
|..++-.+ +.+ .| +.+........+...|.+..++|.|..|-+-|.++
T Consensus 1099 AV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1099 AVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 87765322 111 12 22334444455666699999999998888877665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=69.25 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh--
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-- 312 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-- 312 (543)
++..|...+..|+|++|++.|+.+....|-.+.+... .+.+|.+++..++|++|+..+++-++++|.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qA---------qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQA---------QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4444667777777777777777777777766544322 23467788888888888888888888877764
Q ss_pred -hHHhHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHH
Q 009096 313 -ILYCNRAICWSKMGL---------------WENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 313 -~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 348 (543)
.+++..|.+++.... ..+|...|++.+...|++.-+
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 467777777777765 789999999999999987643
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=68.13 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=52.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHH-----cCCCcccEEEEEECCeEEEEEcCCCHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKS-----EGVRTVPTFKIYKNGEKLKEMINPSHQFLE 504 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 504 (543)
++.|+++||++|+.+.+.|+++ ++.+..+|+++.+..... +++.++|++ ++.+|+.+. ..+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHHHH
Confidence 5679999999999999999876 345667888877766655 389999997 577886543 45666776
Q ss_pred HHHH
Q 009096 505 DSAN 508 (543)
Q Consensus 505 ~~~~ 508 (543)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 6654
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-07 Score=77.39 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=75.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------------~~~~~~ 473 (543)
.++++++.||++||+.|....|.+.++..+++ ++.|+.|.++. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56789999999999999999999999999996 58888887653 135678
Q ss_pred HcCCCcccEEEEEE-CCeEEEEEc---------CC-CHHHHHHHHHhcCCCCCCCC
Q 009096 474 SEGVRTVPTFKIYK-NGEKLKEMI---------NP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 474 ~~~v~~~Pt~~~~~-~g~~~~~~~---------g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.|||..+|+++++. +|+++.+.. +. +.+++++.|+..++..+..-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCc
Confidence 99999999988885 999886631 12 67889999998876654443
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=78.57 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=67.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc--------CcHHH----HHHcC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE--------ESLAI----AKSEG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~--------~~~~~----~~~~~-------------- 476 (543)
.++++++.||++||++|+...|.|.++.++|. ++.++.|+++ ...++ .++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 35789999999999999999999999999996 4888888753 21121 12211
Q ss_pred --------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 477 --------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 477 --------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|...||.+++ ++|+++.++.|. ++++++..|++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 3445877777 699999999998 99999999987654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=69.45 Aligned_cols=241 Identities=14% Similarity=0.127 Sum_probs=160.6
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCC-----h-hHHHHHHHHHHHhCCHHHHHHHhcC
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLD-------------PGY-----N-RAHQRLASLYFRLGQVENARHHLCF 141 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~-----~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (543)
....|...-.++.++...++|...+...-+++ |+. | ......|.+...+|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35677777888888888888888776665554 111 1 1233446666677777666654422
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHhhhhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 142 PGHHPDPNELLKLQSFEKHLNRCAESRKIGDW-KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
. .........-.+.+.. +..++.+++-+. .+.+.+..++..+|+|.-.+..+.++++
T Consensus 148 L---------------~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 L---------------KTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred H---------------HHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 2 2222222222333333 556666666553 4567778899999999999999999998
Q ss_pred CCCCC-ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 221 FEHYS-PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
.+|.. +.....+ |.+..+.|+.+.|..+|+.+-+....-.... .......+.+.++.-.++|.+|..
T Consensus 206 ~~~e~~p~L~s~L------gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q------~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 206 YYPEQEPQLLSGL------GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ------GKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hCCcccHHHHHHH------HHHHHhcccHHHHHHHHHHHHHHHhhhhccc------hhHHHHhhhhhheecccchHHHHH
Confidence 77443 3333333 8889999999999999986543221110000 001112456778888889999999
Q ss_pred HHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 009096 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVS 355 (543)
Q Consensus 300 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 355 (543)
.|.+++..+|.++.+-++.|.|+..+|+...|++..+.++...|... ...+++..+
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999888743 334444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=70.56 Aligned_cols=67 Identities=19% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ----PN---YTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
|+-..++.++|.+|..+|++++|+.+|++++++. ++ ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445677888888888888888888888887651 12 2456788888888888888888888888775
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-05 Score=75.34 Aligned_cols=228 Identities=14% Similarity=-0.015 Sum_probs=157.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCC
Q 009096 93 TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGD 172 (543)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (543)
...+++.+|+....+.++..|+..-+...-|..+.++|+.++|..+++..-..+..+. ..+-..-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~-------~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD-------LTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch-------HHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999999977765544211111 123344567889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH---
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE--- 249 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--- 249 (543)
+++|...|++++..+|. ....+.+-.+|.+.++|.+-.+.--+.-+..|.++...+... ..+.......+
T Consensus 93 ~d~~~~~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-----Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-----SLILQSIFSENELL 165 (932)
T ss_pred hhHHHHHHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-----HHHHHhccCCcccc
Confidence 99999999999999998 566666777888888876644444444446677755443332 22232222222
Q ss_pred ------HHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hc-cCCCChhHHhHHHH
Q 009096 250 ------NAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG-LK-YDSYNSILYCNRAI 320 (543)
Q Consensus 250 ------~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~-~~p~~~~~~~~la~ 320 (543)
-|....++.++.. +-...+-..+ .-.++..+|++++|.+.+..- .+ ..+.+...-.....
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-----------yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIIL-----------YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHH-----------HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3445556666555 2222111111 234567789999999999433 33 33444444455677
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
.+..+++|.+-.+...+++..++++
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhCCcc
Confidence 7888999999999999999999987
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-06 Score=72.54 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=67.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----------CcHHHHHHcCCCcccEEEEEE-CC-eEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----------ESLAIAKSEGVRTVPTFKIYK-NG-EKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g-~~~ 492 (543)
.+..++.|+.+.|+.|+.+.|.+..++++| ++.+..|++| .+..+++++||..+|+++++. ++ +..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 677899999999999999999999999998 8888888887 347899999999999998886 45 444
Q ss_pred EEEcCC-CHHHHHHHH
Q 009096 493 KEMINP-SHQFLEDSA 507 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~ 507 (543)
.-..|. +.++|.+-|
T Consensus 199 pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 199 PVSQGFMSLDELEDRI 214 (215)
T ss_pred EEeeecCCHHHHHHhh
Confidence 445688 988887643
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.2e-06 Score=70.86 Aligned_cols=139 Identities=14% Similarity=0.054 Sum_probs=104.2
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhccCCCC------
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS-RRYSEACSAYGEGLKYDSYN------ 311 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------ 311 (543)
+.+|. ..+.++|+.++++++++..+-...... +.-...+|.+|... .++++|+.+|+.+-+.....
T Consensus 81 ~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 81 ANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 44444 448999999999998887665544322 11235678888665 89999999999998764332
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-------KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
...+...+..-..+++|.+|+..|+++....-++. +-++.-|.|++-..+.-.+...+++..+++|.-.+.++
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE 233 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE 233 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence 34555667777889999999999999988765554 34567788899889999999999999999998665543
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.4e-07 Score=64.65 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=57.7
Q ss_pred eeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcC-C-CHHHHHHHHH
Q 009096 432 HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMIN-P-SHQFLEDSAN 508 (543)
Q Consensus 432 ~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~~~~~~~ 508 (543)
.+.+++|+.|..+...+.++..+++ +.+--+|+.+.+++ .+|||.++||+++ ||+.+ +.| . +.++++++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 3467789999999999999999984 87777888777777 9999999999944 88854 557 5 9999999885
|
... |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=75.09 Aligned_cols=83 Identities=25% Similarity=0.445 Sum_probs=70.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc-CcHHHHHHcC--CCcccEEEEEECCeEEEEEcC--C-
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-ESLAIAKSEG--VRTVPTFKIYKNGEKLKEMIN--P- 498 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~- 498 (543)
..++++.||++||++|+.+.|.+.++.++++. +.+..+|.. ..+.++..++ +..+|+++++.+|+.+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 67889999999999999999999999999985 999999997 8899999999 999999999999987666665 3
Q ss_pred CHHHHHHHHH
Q 009096 499 SHQFLEDSAN 508 (543)
Q Consensus 499 ~~~~~~~~~~ 508 (543)
+...+.....
T Consensus 112 ~~~~~~~~~~ 121 (127)
T COG0526 112 PKEALIDALG 121 (127)
T ss_pred CHHHHHHHhc
Confidence 5555554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=65.54 Aligned_cols=151 Identities=15% Similarity=0.043 Sum_probs=114.9
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh-cCCCcHHHHHHHHhHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL-LDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~ 281 (543)
.+.=+.+.......+.+...|... ..+.+|.....+|++.+|...|++++. +..+++...
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTvq-------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l------------ 127 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTVQ-------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML------------ 127 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhHH-------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH------------
Confidence 333344444444445555555542 122338889999999999999999884 455555543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
..++++.+..+++..|...+++..+.+|. .+.....+|.++...|.+.+|...|+.++...|+ +.+....+..+.++
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q 206 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ 206 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence 34788999999999999999999998875 4778888999999999999999999999999886 67788889999999
Q ss_pred cCHHHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEALR 373 (543)
Q Consensus 360 g~~~~A~~~~~~al 373 (543)
|+..+|..-+....
T Consensus 207 gr~~ea~aq~~~v~ 220 (251)
T COG4700 207 GRLREANAQYVAVV 220 (251)
T ss_pred cchhHHHHHHHHHH
Confidence 98888776554443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-07 Score=79.74 Aligned_cols=101 Identities=32% Similarity=0.501 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+..-|+-|++.++|..|+..|.+.|+....+ +..|.|+|.|...+|+|..|+..+.+++.++|.+..++++-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 5678999999999999999999999886444 568999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChH
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..+.++.+|..+.+..++++-+...
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 9999988888888877776544433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=67.00 Aligned_cols=193 Identities=13% Similarity=0.052 Sum_probs=124.9
Q ss_pred HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHH
Q 009096 128 RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG----V-DSSPQLVACKAEAH 202 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p-~~~~~~~~~~a~~~ 202 (543)
-.+.+++|.+.|.++- ..|...++|..|-..|.++-... . .+....|...+.+|
T Consensus 26 g~~k~eeAadl~~~Aa---------------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy 84 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA---------------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY 84 (288)
T ss_pred CCcchHHHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 3457888888776552 33344455555555555554331 1 11223333334444
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
. ..+..+|+.++++++++..+.............+|.+|... .++++|+.+|+.+-+...........- ..+
T Consensus 85 k-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN------KC~ 157 (288)
T KOG1586|consen 85 K-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN------KCL 157 (288)
T ss_pred h-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH------HHH
Confidence 3 34788888888888777666544444333344447777665 899999999999876655443322110 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCh-------hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
...+......++|.+|++.|++.....-++. ..++.-|.|++...+.-.+...+++..+++|...+.
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 3456667788999999999999887655443 345667899999899999999999999999987644
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.3e-06 Score=76.85 Aligned_cols=321 Identities=12% Similarity=0.061 Sum_probs=189.7
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHH-HcCCHHHHHHHHHHHHh--cC---C---------
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLT-ALGRLTEAVSDCEEAVR--LD---P--------- 113 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~--~~---p--------- 113 (543)
..+...+...+..+.|+..++.++..-.++..+...+++.+.+.+ +.|.... ....+.... .+ |
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhh
Confidence 355667777888999999999999988888777777777776544 4444322 122222111 11 1
Q ss_pred -CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009096 114 -GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP 192 (543)
Q Consensus 114 -~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 192 (543)
+....+++.|.+++....+..|+......+....+-...... ..-+..-..+....+.++|+.++.-.-++.
T Consensus 97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa--~v~~l~~~l~~~t~q~e~al~~l~vL~~~~----- 169 (696)
T KOG2471|consen 97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAA--SVTLLSDLLAAETSQCEEALDYLNVLAEIE----- 169 (696)
T ss_pred hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 234567888888888888888888765544311111100000 001111122223334444443332211110
Q ss_pred HHHHHHHHH-HHHccChhHHHHHhhcCCCCCCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 193 QLVACKAEA-HLKLHQNEDADSCLSNMPKFEHYS--PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 193 ~~~~~~a~~-~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
+.. ....|+...+-.....+-.....+ ...........+....+....+..-+..-.+-+..+..+.+...
T Consensus 170 ------~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l 243 (696)
T KOG2471|consen 170 ------AEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMAL 243 (696)
T ss_pred ------HhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHH
Confidence 000 000111111111111111000000 00001111222234455666666667666666666666665553
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hccCCC--------ChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG-LKYDSY--------NSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+ .++.++..|+|.+|.+.+... +...|. ....|+++|.+++++|.|.-+..+|.++++
T Consensus 244 ~L------------Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 244 LL------------KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HH------------HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 22 578889999999999988654 233333 245689999999999999999999999996
Q ss_pred h---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 341 I---------QP---------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 341 ~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
. .| ...+.+|+.|..|...|+.-.|.++|.++.+....+|.+|-.+..+-..-.+
T Consensus 312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 1 12 2457899999999999999999999999999999999999888886655443
|
|
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-07 Score=74.74 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=55.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCc-------------------------HHHHHHcC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEES-------------------------LAIAKSEG 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~-------------------------~~~~~~~~ 476 (543)
++.+.++|.+.||++|+.+-|.+.++.++. +.+.++.|+-|.. +++..+|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 588999999999999999999887666544 4477777766643 46889999
Q ss_pred CCcccEEEEEE-CCeEEEE
Q 009096 477 VRTVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~ 494 (543)
|.++|++++.+ +|+.+.+
T Consensus 113 v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVTE 131 (157)
T ss_pred cCcCceeEEecCCCCEehH
Confidence 99999999887 9987754
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=68.03 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=56.0
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc----CC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM----SP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
|.-+..+..+|.++...|+|++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778899999999999999999999999975 12 22578899999999999999999999999875
|
... |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-07 Score=75.94 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=59.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------cHHHHHH-cC---------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------SLAIAKS-EG--------------- 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------~~~~~~~-~~--------------- 476 (543)
++++++.||++||+ |....|.|.++.+++. ++.++.|.++. ....+++ ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 67899999999999 9999999999999995 48888886531 1122322 22
Q ss_pred --------CCccc-----------EEEEE-ECCeEEEEEcCC-CHHHHHHH
Q 009096 477 --------VRTVP-----------TFKIY-KNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 477 --------v~~~P-----------t~~~~-~~g~~~~~~~g~-~~~~~~~~ 506 (543)
+.++| |.+++ ++|+++.++.|. +.++++..
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 45555 699999999998 88877654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.6e-08 Score=81.01 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=80.0
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.....+ .+..++.|+++||+.|+...|.++.++.--.+ +.+.+||+..++-+.-+|=|...|||+-+++| +.
T Consensus 30 ~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG-eF 106 (248)
T KOG0913|consen 30 DEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG-EF 106 (248)
T ss_pred cccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc-cc
Confidence 444555553 47889999999999999999999998765444 89999999999999999999999999999999 56
Q ss_pred EEEcCC-CHHHHHHHHHhc
Q 009096 493 KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~ 510 (543)
.|+.|. ++..+..+++..
T Consensus 107 rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 107 RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred ccccCcccchhHHHHHHhh
Confidence 788898 999999999854
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-07 Score=68.42 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
...+...+++++|+|+++||++|+.+...+ .++.+.+ .++.++.+|.+.........+ .++|+++++.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 334456689999999999999999998866 3444322 569999999987665443222 6799999874
|
... |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-05 Score=75.61 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=94.5
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCh-hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 288 LFSSRRYSEACSAYGEGLKYDSYNS-ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
....|+...|+.++..|+...|... ....+||.++.+-|-...|-..+.+++.++...+-.++.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3446889999999999999988654 567889999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 367 RDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+.|+.|++++|+++.+...|..+..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999998887665
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-07 Score=78.90 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=81.4
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
......++.||++||.+|..+...++.+++..+++.|++++.+..++|+..+.|..+|+++++.+|+.+.++.|..+..+
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~ 94 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFL 94 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHH
Confidence 36778899999999999999999999999988899999999999999999999999999999999999999999976777
Q ss_pred HHHHHhcCCC
Q 009096 504 EDSANLAPSP 513 (543)
Q Consensus 504 ~~~~~~~~~~ 513 (543)
...++.....
T Consensus 95 ~~~~~~~~~~ 104 (227)
T KOG0911|consen 95 VSKVEKLAES 104 (227)
T ss_pred HHHHHHhhhh
Confidence 7777766543
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=72.87 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=64.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeC--------cC---cHHHHHH-cC--------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDV--------EE---SLAIAKS-EG-------------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~--------~~---~~~~~~~-~~-------------- 476 (543)
.+++++|.||++||++|....|.+.++.++|. ++.++.+++ +. ....+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 35778999999999999999999999999985 488888875 11 1122221 22
Q ss_pred ---------C---CcccE-----EEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 477 ---------V---RTVPT-----FKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 477 ---------v---~~~Pt-----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+ .++|+ +++-++|+++.++.|. +.+++...|++.
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 14684 5555799999999998 999999988765
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=64.13 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=83.0
Q ss_pred eehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 413 ISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 413 ~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+....++++. ..+.+++.|.-.|-+.|..+...|.+++.+..+ ..++.+|+++-++..+-|++...||+++|.|+
T Consensus 8 L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 8 LHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred cccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 344455556653 367889999999999999999999999999998 78899999999999999999999999999877
Q ss_pred eEEE---------EEcCC--CHHHHHHHHHhcCCCC
Q 009096 490 EKLK---------EMINP--SHQFLEDSANLAPSPV 514 (543)
Q Consensus 490 ~~~~---------~~~g~--~~~~~~~~~~~~~~~~ 514 (543)
+-+. .+.++ +++++.+.|+...-..
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhh
Confidence 5442 34444 8999999999765443
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-06 Score=70.78 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=66.3
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCcc-
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRTV- 480 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~~- 480 (543)
++++++.|| +.||+.|....|.+.++.+++. ++.++.|..+. ...+++.|||...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 678999999 5899999999999998888773 47777766543 3468889999988
Q ss_pred --------cEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 481 --------PTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 481 --------Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
|+++++. +|+++..+.|. ..+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8888875 89999999998 777777665
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.1e-05 Score=63.38 Aligned_cols=151 Identities=17% Similarity=0.045 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC-CCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 171 GDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK-FEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
=|.+.......+.+...|.. .-.+.++..+..+|++.+|...|++++. +.-+++. .++.+++..+..+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv--qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a------~lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV--QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA------MLLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH--HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH------HHHHHHHHHHhhccHH
Confidence 34555555556666666653 4567789999999999999999999875 3444433 3445599999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
.|...+++..+.+|........+ -.|..+...|++.+|...|+.++...|. +......+..+.++|+.+
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~L----------l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHL----------LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchH----------HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchh
Confidence 99999999998887643322211 2688999999999999999999999987 778888899999999988
Q ss_pred HHHHHHHHHHh
Q 009096 330 NSIEDCNVALR 340 (543)
Q Consensus 330 ~A~~~~~~al~ 340 (543)
+|..-+..+.+
T Consensus 211 ea~aq~~~v~d 221 (251)
T COG4700 211 EANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHHHH
Confidence 88776665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=65.95 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF---SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
|+.|.+.++.....+|.+.+.+..+.. .+..++..-. ...-+++|+.-|++|+.++|+...+++++|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~-----ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGG-----ALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHH-----HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHH-----HHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 678899999999999999987654432 2333333311 22457899999999999999999999999999987
Q ss_pred ccC-----------HHHHHHHHHHHHhhCCCCHHH
Q 009096 325 MGL-----------WENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 325 ~g~-----------~~~A~~~~~~al~~~p~~~~~ 348 (543)
++. |++|..+|+++...+|++...
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 754 788999999999999997643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=60.33 Aligned_cols=60 Identities=33% Similarity=0.482 Sum_probs=51.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECC
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNG 489 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g 489 (543)
++.|+.+||+.|..+.+.+.++....+++.+..+|++....... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999984445679999999998876654 8899999999999877
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=54.58 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=24.0
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345555555555555555555555555555555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=66.55 Aligned_cols=243 Identities=11% Similarity=0.029 Sum_probs=167.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-------------------hhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-------------------AAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
+....|...-..+.+...+++|...+...-++|..+ ......-|.+...+|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 455677777778888889999988877665554221 1122344556666677666665554
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCH-HHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQV-ENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
..... ..--..-.+++.. +..+..+++- .-...+....++...|.|.-.+..+.++++
T Consensus 147 ~L~~~--------V~~ii~~~e~~~~~ESsv~lW~KR-------------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 147 KLKTV--------VSKILANLEQGLAEESSIRLWRKR-------------LGRVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred HHHHH--------HHHHHHHHHhccchhhHHHHHHHH-------------HHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 43321 1111111122222 2222222211 112244566777889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
.+|+..+.+...+|.+-.+.|+.+.|..+++++-+....-...........+.+.++.-.+++.+|...|.+++..+|.+
T Consensus 206 ~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence 99888899999999999999999999999996654433333333444455666888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHH
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAIC 321 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~ 321 (543)
+.+. .+.|.++.-.|+...|++..+.+++..|... .+.+++...
T Consensus 286 ~~a~------------NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 286 AVAN------------NNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred hhhh------------chHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 8774 3479999999999999999999999998753 344444433
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-05 Score=68.21 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----------HHHHHHcCCCcccEEEEEE-C-CeEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----------LAIAKSEGVRTVPTFKIYK-N-GEKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----------~~~~~~~~v~~~Pt~~~~~-~-g~~~ 492 (543)
....++.|+.+.|+.|+.+.|.+..++++|+ +.+..|++|.. ..+++++||..+|+++++. + ++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMS 228 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEE
Confidence 4578999999999999999999999999984 77777777744 4589999999999988886 5 3444
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.-..|. +.++|.+-|-......
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHhcc
Confidence 445688 9999988887665544
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0039 Score=59.13 Aligned_cols=354 Identities=16% Similarity=0.030 Sum_probs=208.7
Q ss_pred cccccccccccccCC---CCCCCCcccccccc---CHHHHHHHhhHHH-hcCCHHHHHHHHHHHHhcC---Ccc----hh
Q 009096 18 NYGHGSIVRSCSSNI---NNNNNNVKTSNVAV---DAEEVKRAGNEMY-RKGNFVEALKLYDKAISMS---PEN----AA 83 (543)
Q Consensus 18 ~~g~~~~~~~~~~~~---a~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~---p~~----~~ 83 (543)
..|.++..|..+... ++++++......|. .+.....+|..++ -..+++.|...++++..+. |.. ..
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 356666666666432 34444443333322 3455677777655 5789999999999998753 332 36
Q ss_pred hHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHH---
Q 009096 84 YRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYN----RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--- 155 (543)
Q Consensus 84 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--- 155 (543)
+...++.+|.... .+..|...+++++++....+ ...+.|+.+..-..++..|++.+.--....++.....+.
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7788999999987 88999999999999987665 456788999999999999999865443322222111000
Q ss_pred ---------------HHHHHHH--------------------------HHHhhhhcCCHHHHHHHHHHHH---Hc-CC--
Q 009096 156 ---------------SFEKHLN--------------------------RCAESRKIGDWKTVLRETDAAI---AI-GV-- 188 (543)
Q Consensus 156 ---------------~~~~~~~--------------------------~~~~~~~~~~~~~A~~~~~~~l---~~-~p-- 188 (543)
.+..... .-..|...|+...+...+++.. .. .+
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 0000011 1122334455544444444322 11 11
Q ss_pred ---------CCCHHHHHH------HHHHH-------HHccChhHHHHHhhcCCCCCCCC------Ch--hHHHHHHHHHH
Q 009096 189 ---------DSSPQLVAC------KAEAH-------LKLHQNEDADSCLSNMPKFEHYS------PP--SQVKFLVWLLK 238 (543)
Q Consensus 189 ---------~~~~~~~~~------~a~~~-------~~~~~~~~A~~~~~~~~~~~~~~------~~--~~~~~~~~~~~ 238 (543)
..++..... -+.+| ...|-+++|.++-++++...... .. .......+-.+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 111111100 01111 12344566666555554332111 11 11222233344
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-C--hhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-N--SILY 315 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~ 315 (543)
..+-.-.|++.+|++....+.+..-..+.-...-+ ....-..-+|.-....+.|+.|...|..|.+.... + +-.-
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~--~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA--HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH--hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66777789999998888777644332222110000 01111233677777888999999999999887543 3 3455
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNY----------TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.++|..|.+.|+-+.-.+.++. +.|.+ ..+++..|...+..+++.||...+.+.+++.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 6789999998875544444433 44442 2567888999999999999999999999987
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0041 Score=59.92 Aligned_cols=73 Identities=7% Similarity=-0.000 Sum_probs=67.1
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (543)
++.++.+|.|.++|+.+...+-.+ .+++....|++.+...|..+.+|.......+..++|+...+.|.+++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 667889999999999998877666 9999999999999999999999999999999999999999999998753
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=81.77 Aligned_cols=97 Identities=33% Similarity=0.423 Sum_probs=92.3
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+..+-..|..++..+.|+.|+..|.+||+++|+++..+.+++.++.+.+++..|+..+.++++.+|....+|++.|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 44566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCC
Q 009096 128 RLGQVENARHHLCFPGH 144 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~ 144 (543)
.++++.+|+..|++...
T Consensus 84 ~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKK 100 (476)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 99999999999998877
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-06 Score=69.09 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------c-HHHHHHcCCCc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------S-LAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~-~~~~~~~~v~~- 479 (543)
.++++++.||+.| |++|+...|.|.++.++++++.|+.|++|. . ..++..|||..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 3578999999988 699999999999999999888888887752 1 45778888863
Q ss_pred -----ccEEEEEE-CCeEEEEEcCC---CHHHHHHHH
Q 009096 480 -----VPTFKIYK-NGEKLKEMINP---SHQFLEDSA 507 (543)
Q Consensus 480 -----~Pt~~~~~-~g~~~~~~~g~---~~~~~~~~~ 507 (543)
.|+.+++. +|+++....|. ...++++.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 68877775 99999988864 445565554
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=73.38 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=63.7
Q ss_pred CCce-eeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------c-HH----HHHH----------------
Q 009096 426 PGVS-LVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------S-LA----IAKS---------------- 474 (543)
Q Consensus 426 ~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------~-~~----~~~~---------------- 474 (543)
++++ ++.+|++||++|+...|.+.++.++|. ++.++.|+++. . .. +.++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 4544 556799999999999999999999985 48888887531 0 00 1111
Q ss_pred --------------------cCCCcccE----EEEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 475 --------------------EGVRTVPT----FKIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 475 --------------------~~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++.++|+ +++-++|+++.++.|. +.+++.+.|++.+.
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13557894 5555799999999998 88889988887653
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.7e-06 Score=59.61 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc----CCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE----GVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
++.|+.+||++|..+.+.+++ .++.+..+|++......+.+ ++.++|++++ +| ..+.|.++++|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-----~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-----RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-----CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 467899999999999988876 35777788888766554444 7899999975 55 3566888888876
Q ss_pred HH
Q 009096 506 SA 507 (543)
Q Consensus 506 ~~ 507 (543)
++
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 53
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-06 Score=53.70 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=21.0
Q ss_pred hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 84 YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=50.98 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 335 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777777777777777777777777664
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.4e-06 Score=60.10 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=57.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|+.+||+.|....+.|+++..++.++.+..+|++.. .++....+ +.++|+++ .||+.+. |+ ++|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~--~~~ 75 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC--TDF 75 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH--HHH
Confidence 567899999999999999999998888899999999864 24555444 58999975 5887643 33 567
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
.++++...
T Consensus 76 ~~~~~~~~ 83 (85)
T PRK11200 76 EAYVKENL 83 (85)
T ss_pred HHHHHHhc
Confidence 77776654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-05 Score=67.80 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
.+-..|+-|++.++|..|+..|.+.++..-.++++...+ |.+++.+....|+|..|+....+++.++|.+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavL--------Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVL--------YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333449999999999999999999998887777765554 456899999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+++.=|.|++.+.++.+|..+++..+.++.+
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999998877644
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00045 Score=65.86 Aligned_cols=139 Identities=15% Similarity=0.032 Sum_probs=85.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCChhHHhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-DSYNSILYCN 317 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 317 (543)
|.+..++|+.++|++.++..++..|....... ..++-.++...+.|.++...+.+--+. -|.++...+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~I----------renLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNI----------RENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhH----------HHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 77777777777777777777776664322111 123566777777777777777665333 2555555555
Q ss_pred HHHHHHH-ccC---------------HHHHHHHHHHHHhhCCCCHHHHHHHHH------HHHHccCHHHHHHHHHHHHhc
Q 009096 318 RAICWSK-MGL---------------WENSIEDCNVALRIQPNYTKALLRRAV------SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 318 la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~al~~ 375 (543)
.+.+-.+ .++ -..|.+...+|++.||.-+..+..+-. -..+.|+ .||+.+---.++.
T Consensus 336 aALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~h 414 (539)
T PF04184_consen 336 AALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQH 414 (539)
T ss_pred HHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHH
Confidence 5554332 111 235778899999999987765543322 2455666 8888887777766
Q ss_pred CCCChHHHHHHHH
Q 009096 376 LPGDNEVAESLHN 388 (543)
Q Consensus 376 ~p~~~~~~~~l~~ 388 (543)
-.+-+.+...|.-
T Consensus 415 Wk~veGAL~lL~~ 427 (539)
T PF04184_consen 415 WKRVEGALNLLHC 427 (539)
T ss_pred HhcCHhHHHHHHH
Confidence 6655665555543
|
The molecular function of this protein is uncertain. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0071 Score=57.08 Aligned_cols=137 Identities=12% Similarity=-0.003 Sum_probs=94.1
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
.+...|-.+.+++++++|...|.++.+...+.+ +.+.++-.--+-+++.+.-...+-..-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 456678889999999999999999987655443 344444444455677777666666666778888888888899
Q ss_pred HHHHhCCHHHHHHHhcCCCCC---CCh-----HHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 009096 125 LYFRLGQVENARHHLCFPGHH---PDP-----NELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI 186 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 186 (543)
..++.++|.+|++.+...-.. ..+ .........-.-...+.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999987543321 111 11111111222234567788899999998888777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0001 Score=68.14 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhccCCCCh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS-SRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~ 312 (543)
+|+.......+.+..+.|...|.+|.+..+-...++.. .|.+.+. .++.+.|...|+.+++..|.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~------------~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVA------------YALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHH------------HHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 34445677777888999999999998666656666532 4666555 5677779999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
..|......+...++.+.|...|++++..-|... ..|......-.+.|+.+...+..+++.+..|++..+..
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999999999999999998876654 67888888889999999999999999999999666553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-06 Score=76.42 Aligned_cols=95 Identities=22% Similarity=0.389 Sum_probs=90.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 363 (543)
.+.-.+..|.+++|++.|..++.++|..+..+..++.++.++++...|++.|..++.++|+....|-.+|.+...+|+|+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 009096 364 EAVRDYEALRRELPG 378 (543)
Q Consensus 364 ~A~~~~~~al~~~p~ 378 (543)
+|..++..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999998754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00085 Score=66.58 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=89.5
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHH------HHhc----CCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDK------AISM----SPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRL-------- 111 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~------al~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 111 (543)
|-..|..+-+..++++|+++|++ ++++ .|... ..--..|.-+...|+++.|+..|-.+-.+
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHh
Confidence 33445556666778888888765 3333 33321 22233466677778888888776543211
Q ss_pred ----------------C-CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 112 ----------------D-PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 112 ----------------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
+ ..-...|-..+.-|...|+|+-|.+.|.++-. .......|-+.|+|+
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAGKWE 808 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccccHH
Confidence 0 01123344567777788888888887766532 223344566777888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
.|...-.+.. .|......|...+.-+-..|+|.+|.+.|-.+
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 7776665554 24444556666677777777777776665443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-06 Score=50.16 Aligned_cols=32 Identities=38% Similarity=0.500 Sum_probs=17.9
Q ss_pred HHHHHhcCCcchhhHHhHHHHHHHcCCHHHHH
Q 009096 71 YDKAISMSPENAAYRSNRAATLTALGRLTEAV 102 (543)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 102 (543)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=67.88 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=58.9
Q ss_pred CCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCccc
Q 009096 426 PGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 426 ~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~~P 481 (543)
++++++.||+.| |++|....|.|.++.+++.++.++.|..|. ...+++.|||...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 568999999999 999999999999999888777777776653 12678899998777
Q ss_pred ---------EEEEEE-CCeEEEEEcC
Q 009096 482 ---------TFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 482 ---------t~~~~~-~g~~~~~~~g 497 (543)
+.+++. +|+++....+
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEEC
Confidence 777774 9999988754
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.9e-06 Score=60.99 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=46.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-----HHHHHcCCCcccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-----AIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
++.|+++||++|..+.+.++++... +.+.++.+|.++.. .+.+..|+.++|++ |.||+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4679999999999999999998622 23677777776543 36777899999997 4578654
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0079 Score=57.19 Aligned_cols=330 Identities=14% Similarity=0.013 Sum_probs=198.1
Q ss_pred HHHHHHHhhHHHhcC-CHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc-----------
Q 009096 48 AEEVKRAGNEMYRKG-NFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL----------- 111 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 111 (543)
.++...++.++.+.. .+..|...+++++++....+ ...+.++..+.-..++..|++.+.--.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 456667788888776 88899999999999866554 45677888888888888888774321110
Q ss_pred ------------CCCCh---------------------------hHHHHHHHH-HHHhCCHHHHHHHhcC---CCC----
Q 009096 112 ------------DPGYN---------------------------RAHQRLASL-YFRLGQVENARHHLCF---PGH---- 144 (543)
Q Consensus 112 ------------~p~~~---------------------------~~~~~la~~-~~~~g~~~~A~~~~~~---a~~---- 144 (543)
.|+.. ..+..+-.+ |...|+...+...+++ .+.
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 11100 112222222 2233444333333321 111
Q ss_pred -----------CCChHHHhHH--HHHHHHHHH--HHhhhhcCCHHHHHHHHHHHHHcCC---CC---CH-------HHHH
Q 009096 145 -----------HPDPNELLKL--QSFEKHLNR--CAESRKIGDWKTVLRETDAAIAIGV---DS---SP-------QLVA 196 (543)
Q Consensus 145 -----------~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~~~p---~~---~~-------~~~~ 196 (543)
.+.+.....+ ..+..+..+ -......|-+++|.++-++++.... .. .+ ..+.
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 1111111111 011111111 1222456788888888888876521 11 11 1233
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCCh--hH--HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPP--SQ--VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.+..|-.-.|++.+|++....+.......+. .. ......+.+|......+.++.|...|..+.+..... +.+...
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 4667777889999999888776654333322 11 111123344777777888999999999998764332 222222
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-------SILYCNRAICWSKMGLWENSIEDCNVALRIQPN- 344 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 344 (543)
-.++|..|.+.|+-+.-.+.++..-..+... ..+++..|...+..+++.+|...+.+.++....
T Consensus 407 --------nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae 478 (629)
T KOG2300|consen 407 --------NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE 478 (629)
T ss_pred --------HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh
Confidence 1468999999887665555544432222111 456777888899999999999999999987521
Q ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 345 -----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 345 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
..-.+..+|.+....|+..++....+-++++...-+++...|
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL 525 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL 525 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence 123456788889999999999999999988876655544333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00043 Score=59.47 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=73.1
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCChhHHhH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------DSYNSILYCN 317 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 317 (543)
...++++|+..|++++.+...+......... +-..+.++.+..+|++|-..+.+-... .++....+..
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va 195 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFEL------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA 195 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHH------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence 4455666777777766544333322211111 123577788888888887777654332 3444556666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRI----QPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
...+|+...+|..|..+++..-++ .|++..+.-+|-..| ..|+.++....+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 777788888999999999987765 344555555554444 456777665544
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=98.09 E-value=9e-06 Score=65.27 Aligned_cols=70 Identities=17% Similarity=0.269 Sum_probs=58.8
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhCC--CeEEEEEeCcCc---------------------HHHHHHcCCC--
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES---------------------LAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~---------------------~~~~~~~~v~-- 478 (543)
.++++++.||.. ||+.|....+.+.++..+++ ++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999998 99999999999999998885 689888887642 3688999999
Q ss_pred ----cccEEEEEE-CCeEEEE
Q 009096 479 ----TVPTFKIYK-NGEKLKE 494 (543)
Q Consensus 479 ----~~Pt~~~~~-~g~~~~~ 494 (543)
.+|+++++. +|+++.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEESEEEEEEETTSBEEEE
T ss_pred cCCceEeEEEEECCCCEEEeC
Confidence 999888886 7877653
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=65.48 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=62.4
Q ss_pred CCCceeeeeeCC-CCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||+. ||+.|....+.+.++.+++. ++.|+.|..|. ...+++.|||...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 357899999975 68889999998988888773 47777776653 2457889998754
Q ss_pred ------------cEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 481 ------------PTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 481 ------------Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
|+.+++ ++|+++..+.|+ ..+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 565666 599999999998 5555555443
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00032 Score=62.13 Aligned_cols=86 Identities=14% Similarity=0.138 Sum_probs=67.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------cHHHHHHcCCCcccEEEEEE-C-CeEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------SLAIAKSEGVRTVPTFKIYK-N-GEKL 492 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------~~~~~~~~~v~~~Pt~~~~~-~-g~~~ 492 (543)
....++.|+.+.|+.|..+.|.+..++++| ++.+..|.+|. +...++++||..+|+++++. + |+..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 457899999999999999999999999998 45555555553 23467899999999998886 4 4555
Q ss_pred EEEcCC-CHHHHHHHHHhcCC
Q 009096 493 KEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.-..|. +.++|.+-|.....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 556688 99999887776543
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.8e-06 Score=63.43 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=52.7
Q ss_pred CCCceeeeeeC-------CCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcH-------HHHH--HcCCCcccEEEEEE
Q 009096 425 SPGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESL-------AIAK--SEGVRTVPTFKIYK 487 (543)
Q Consensus 425 ~~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~-------~~~~--~~~v~~~Pt~~~~~ 487 (543)
.++++++.|.+ +|||.|....|.+.+.-...| +..|+.+.+...+ ..-. .++|.++||++-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 45677887775 599999999999998887776 4888888875322 2222 59999999999998
Q ss_pred CCeEEEEEcCC---CHHHHHHHHH
Q 009096 488 NGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 488 ~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.| .|+.+. +.+.++.+++
T Consensus 98 ~~---~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 98 TG---ERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp SS----EEEHHHHH-HHHHHHHHH
T ss_pred CC---CccchhhhccHHHHHHHhc
Confidence 77 445553 6666666654
|
; PDB: 1V9W_A 1WOU_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.011 Score=61.57 Aligned_cols=303 Identities=15% Similarity=0.119 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhc-CCc---chhhHHhHHHHHH-HcCCHHHHHHHHHHHHhcCCC--Ch----hHHHHHHHHHHHhCCHH
Q 009096 65 VEALKLYDKAISM-SPE---NAAYRSNRAATLT-ALGRLTEAVSDCEEAVRLDPG--YN----RAHQRLASLYFRLGQVE 133 (543)
Q Consensus 65 ~~A~~~~~~al~~-~p~---~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~ 133 (543)
..|+.+++-+++. .+. ...+++.+|.+++ ...+++.|..++.+++.+... .. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4578888888842 221 2577889999998 689999999999999887643 32 34556788888888877
Q ss_pred HHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CC-CHHH--HHHHHHHHHHccCh
Q 009096 134 NARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DS-SPQL--VACKAEAHLKLHQN 208 (543)
Q Consensus 134 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~-~~~~--~~~~a~~~~~~~~~ 208 (543)
|...+++.++.............-.++ +.......+++..|++.++....... .+ ...+ ....+.++...+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 999998887721111111111111111 22222233899999999999887752 22 1122 22345566667777
Q ss_pred hHHHHHhhcCC------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH---hh---cCC------Cc-----
Q 009096 209 EDADSCLSNMP------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA---GL---LDY------SN----- 265 (543)
Q Consensus 209 ~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---l~---~~p------~~----- 265 (543)
+++++.++++. ..++....+.......+..-.+....|+++.+...+++. +. ..+ ++
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 77777776552 233443223333323333344566677766665554433 21 111 00
Q ss_pred ------------HHHHHHHHhHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----C---CCC-------------
Q 009096 266 ------------VEIASVLTNVK--MVVRARTRGNNLFSSRRYSEACSAYGEGLKY----D---SYN------------- 311 (543)
Q Consensus 266 ------------~~~~~~l~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~---p~~------------- 311 (543)
+.... |-... .+..+.--|......+..++|.+++.++++. . +..
T Consensus 276 ~~~~~~~~~~~~~~~f~-wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~ 354 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFS-WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQ 354 (608)
T ss_pred ecccccccCCCceeEEe-ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHH
Confidence 00000 00000 1111223466667777777887777777653 1 111
Q ss_pred ------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 009096 312 ------SILYCNRAICWSKMGLWENSIEDCNVALRIQ---PN------YTKALLRRAVSNEKLGRWSEAVRDYE 370 (543)
Q Consensus 312 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 370 (543)
..+.+..+.+..-++++..|....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 355 ~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 355 WLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 2344557788888999999999998877653 22 36778999999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=67.42 Aligned_cols=107 Identities=10% Similarity=0.024 Sum_probs=72.6
Q ss_pred CCceee-eeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc---------------------------CcHHHHHHc
Q 009096 426 PGVSLV-HFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE---------------------------ESLAIAKSE 475 (543)
Q Consensus 426 ~~~~lv-~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~---------------------------~~~~~~~~~ 475 (543)
++.+++ .||++||+.|..-.+.|.++.+++. ++.++.+.+| ....+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 444544 6899999999999998888877763 3555555443 235688899
Q ss_pred CCC------cccEEEEEE-CCeEEEEE-----cCCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccC
Q 009096 476 GVR------TVPTFKIYK-NGEKLKEM-----INPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTG 537 (543)
Q Consensus 476 ~v~------~~Pt~~~~~-~g~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 537 (543)
||. .+|+++++. +|+++... .|.+.+++.+.|+.+.....- + ...|++|. |..|+..
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~-~----~~~p~~w~~g~~~~~~ 176 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKR-K----VATPANWQPGQEGIVP 176 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhc-C----CCcCCCCCcCCceecC
Confidence 985 589888885 99887665 245899999999875432111 1 11377783 5555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-06 Score=48.21 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=59.38 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=74.8
Q ss_pred eehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCccc-EEEEEEC
Q 009096 413 ISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVP-TFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P-t~~~~~~ 488 (543)
+.+.-..++++ +.++.+++.|..+|-+.|..+...|.+++.+.++ ..++.+|+++.++.-+-|.+. .| |+++|-+
T Consensus 5 L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 5 LHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp E-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred cCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 33444455555 4578899999999999999999999999999988 889999999999999999998 77 5677767
Q ss_pred CeEEEE---------EcCC--CHHHHHHHHHhc
Q 009096 489 GEKLKE---------MINP--SHQFLEDSANLA 510 (543)
Q Consensus 489 g~~~~~---------~~g~--~~~~~~~~~~~~ 510 (543)
|+-+.- +.+. +++++.+.|+..
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 776532 3334 789999998864
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0038 Score=62.25 Aligned_cols=164 Identities=16% Similarity=0.027 Sum_probs=117.6
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCC-ChhHHHHHHHHHHHHHHH----hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYS-PPSQVKFLVWLLKLMFNI----SELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..--.|+-+.+++.+.++.+...-. +-....+..++.....+. .....+.|.+.+....+..|+..-..
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl------ 270 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL------ 270 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH------
Confidence 3334578889999999887632222 222222222222221222 34567889999999999999876653
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-KALL 350 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~ 350 (543)
...|.++...|+.++|++.|++++.....- .-.++.+|.++..+.+|++|..+|.+..+.+.-.. -..|
T Consensus 271 ------~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 271 ------FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred ------HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 347999999999999999999998643332 35678899999999999999999999998765433 3346
Q ss_pred HHHHHHHHccCH-------HHHHHHHHHHHhcC
Q 009096 351 RRAVSNEKLGRW-------SEAVRDYEALRREL 376 (543)
Q Consensus 351 ~la~~~~~~g~~-------~~A~~~~~~al~~~ 376 (543)
..|.|+...|+. ++|.+.|.++-.+.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 778999999999 77777777776553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=59.16 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=67.4
Q ss_pred EeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCc----HHHHHHcCCC-cccEE
Q 009096 412 EISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEES----LAIAKSEGVR-TVPTF 483 (543)
Q Consensus 412 ~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~----~~~~~~~~v~-~~Pt~ 483 (543)
.+.+.+++++++.. .+++++.=.+++||-..+....|++.....++ +.++.+|+-+. ..|+++|||. --|-+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45677788887755 88999999999999999999999999888887 99999999775 4689999997 45999
Q ss_pred EEEECCeEEEEEcCC--CHHHH
Q 009096 484 KIYKNGEKLKEMINP--SHQFL 503 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--~~~~~ 503 (543)
++++||+.+..-.-. +.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999999875432 66554
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.5e-05 Score=56.73 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=56.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|..+|||.|..+...|+++..+++++.+..+|++.. .++.+..| +.++|+++ .||+.+ .|. ++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---gG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---GGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---cCH--HHH
Confidence 567889999999999999999988878888888888753 34666666 47999984 477653 233 577
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 77777644
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00018 Score=61.76 Aligned_cols=175 Identities=13% Similarity=0.017 Sum_probs=118.5
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+..-+.+|...++|++|..++.++.+-...+...+....++-..+.+...+..+.++..+|+++..+.-++...-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd----- 108 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD----- 108 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-----
Confidence 334456666677777777777777765555555555555555557777788888888888888875432211100
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhh------C
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRI------Q 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~ 342 (543)
.+......+--..+..+.++|+.+|++++.+-..+ .+.+...+.++.+...+++|-..+.+-... .
T Consensus 109 --tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 109 --TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred --hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 00001234555667788999999999998774333 356667788899999999998888775433 2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 343 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
|+...++...-.+++...+|..|..+|+...++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 4444666677777788889999999999987763
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=46.94 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++|+.+|.++..+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0037 Score=58.96 Aligned_cols=188 Identities=11% Similarity=0.026 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCC----CCCCChhHHHHHHHHHHHHHHHh---hcChHHHHHHHHH-HhhcC
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKF----EHYSPPSQVKFLVWLLKLMFNIS---ELRFENAVSSAEK-AGLLD 262 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~-al~~~ 262 (543)
.+.+...+-.+|....+|+.-+++.+.+-.. .++.+.....+ |.++.+ .|+.++|+..+.. .....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~y------afALnRrn~~gdre~Al~il~~~l~~~~ 213 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQY------AFALNRRNKPGDREKALQILLPVLESDE 213 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHH------HHHHhhcccCCCHHHHHHHHHHHHhccC
Confidence 3555667777899999999999988887665 22233322222 777777 8999999999999 45666
Q ss_pred CCcHHHHHHHHhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHH-
Q 009096 263 YSNVEIASVLTNVKMVVRARTRGNN--LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL- 339 (543)
Q Consensus 263 p~~~~~~~~l~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al- 339 (543)
+.+++.+.++..+ ++.+-.. .......++|+..|.++.+.+|+ ...-.|++.++...|.-.+.....++..
T Consensus 214 ~~~~d~~gL~GRI-----yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 214 NPDPDTLGLLGRI-----YKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred CCChHHHHHHHHH-----HHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 7777777665433 1111111 11233489999999999999965 4555667777777775433332222222
Q ss_pred hh-----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 340 RI-----------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 340 ~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.+ .-.+...+-.++.+..-.|++++|.+.+++++++.|..-.....+....
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~ 349 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIK 349 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 11 1234455667888888899999999999999999887766555444443
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.9e-05 Score=64.99 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=76.1
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
++++++.|| ++||+.|....+.|.++.+++. ++.++.|..|. ...+++.|||
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 468899989 9999999999999998888873 46566555442 3578899998
Q ss_pred C----cc--cEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCCC
Q 009096 478 R----TV--PTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGES 539 (543)
Q Consensus 478 ~----~~--Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 539 (543)
. ++ |+++++. +|+++..... .+.+++.+.|+.+-....-.+ ..-|+.|. |..|+....
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g----~~~p~~w~~~~~~~~~~~ 181 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG----EVCPAKWKEGEATLAPSL 181 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCC----eEeCCCCCcCCcceecCH
Confidence 3 66 8777775 9998876432 378888888875432211111 22477787 666665543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=47.42 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=26.8
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888863
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.031 Score=58.16 Aligned_cols=313 Identities=15% Similarity=0.021 Sum_probs=190.3
Q ss_pred cCHHHHHHHhhHHH-hcCCHHHHHHHHHHHHhcCCc--c----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC---C
Q 009096 46 VDAEEVKRAGNEMY-RKGNFVEALKLYDKAISMSPE--N----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG---Y 115 (543)
Q Consensus 46 ~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (543)
.++...+.+|..++ ...++++|..++++++.+... . ..+.+.++.++.+.+... |+..+++.++...+ .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 46678899999988 679999999999999877533 2 234567788998888888 99999999987544 2
Q ss_pred hh-HHHHH--HHHHHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC-
Q 009096 116 NR-AHQRL--ASLYFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG- 187 (543)
Q Consensus 116 ~~-~~~~l--a~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 187 (543)
.. ..+.+ ...+...+++..|++.++.... ..++.. .+...+..+......+..+.+++..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-----~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~ 210 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-----FVLASLSEALLHLRRGSPDDVLELLQRAIAQAR 210 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Confidence 22 12222 2333334799999999987765 223322 22334445556667777777887777764321
Q ss_pred -----CCC-CH--HHHHH--HHHHHHHccChhHHHHHhhcC---C---CCCC-------C-------------------C
Q 009096 188 -----VDS-SP--QLVAC--KAEAHLKLHQNEDADSCLSNM---P---KFEH-------Y-------------------S 225 (543)
Q Consensus 188 -----p~~-~~--~~~~~--~a~~~~~~~~~~~A~~~~~~~---~---~~~~-------~-------------------~ 225 (543)
+.. .+ .++.. .-.++...|+++.+...+++. + ...+ + .
T Consensus 211 ~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~ 290 (608)
T PF10345_consen 211 SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLV 290 (608)
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeE
Confidence 111 11 22222 233555667766655554322 1 0110 0 0
Q ss_pred ----ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH--------------HHHHHHHhHHHHHHHHHHHHH
Q 009096 226 ----PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV--------------EIASVLTNVKMVVRARTRGNN 287 (543)
Q Consensus 226 ----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~l~~~~~~~~~~~~g~~ 287 (543)
+.....+..++.-|......+..++|.++++++++.-.+.. .....+............+..
T Consensus 291 f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~ 370 (608)
T PF10345_consen 291 FSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWC 370 (608)
T ss_pred EeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11122223444447777777877788888888774321111 001111111122223457788
Q ss_pred HHhcCCHHHHHHHHHHHhccC---CC------ChhHHhHHHHHHHHccCHHHHHHHHH--------HHHhhCCCCH---H
Q 009096 288 LFSSRRYSEACSAYGEGLKYD---SY------NSILYCNRAICWSKMGLWENSIEDCN--------VALRIQPNYT---K 347 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~ 347 (543)
.+-.+++..|......+.... |. .+..++..|..+...|+.+.|...|. .+....+.+. -
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 888999999998888776542 22 36788999999999999999999998 3333333332 3
Q ss_pred HHHHHHHHHHHccCHHH
Q 009096 348 ALLRRAVSNEKLGRWSE 364 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~ 364 (543)
+..++..++...+....
T Consensus 451 a~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 451 AALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHhHhhcccch
Confidence 45677777776665333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.97 E-value=5e-05 Score=64.83 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=64.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++.+++.|| +.||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 578999999 7999999999999999988873 46666665442 2357788
Q ss_pred cCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhc
Q 009096 475 EGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....+. +.+++.+.|++.
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8886 567777775 99999888653 467777777764
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00017 Score=64.78 Aligned_cols=160 Identities=9% Similarity=-0.067 Sum_probs=115.9
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc-CCCcHHHHHHHHhHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL-DYSNVEIASVLTNVKM 277 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 277 (543)
+.+....|++.+|....+++++-.|.+.- ++-..-.+++.+|+...-...+++.+.. +|+-|-. .++..+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDll------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~-sYv~Gm-- 180 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLL------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY-SYVHGM-- 180 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhh------hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH-HHHHHH--
Confidence 45566678888888888888888888733 3333356777888888888888888866 5555432 222221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY----TKALLRRA 353 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 353 (543)
.+..+...|-|++|.+.-+++++++|.+..+...++.++...|+..++.++..+.-..-... ..-|..-|
T Consensus 181 ------yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 181 ------YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred ------HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 46677888999999999999999999999988899999999999999888877643321110 12355677
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 009096 354 VSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~al 373 (543)
.++..-+.|+.|++.|.+-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 88888889999998887644
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=60.06 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=67.8
Q ss_pred cCCCCceeeeeeCC----CCccccchh--HhHHHHHhhCCCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEE--C--Ce
Q 009096 423 ISSPGVSLVHFKEA----SSEKCEEIS--PFVNLLCVRYPYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYK--N--GE 490 (543)
Q Consensus 423 i~~~~~~lv~f~~~----~c~~c~~~~--p~l~~l~~~~~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~--~--g~ 490 (543)
-...+.++|+++++ ||..|+..- |.+.+... .++.++..|++. ..+++..+++.++|++.++. + .+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 35688999999999 888887543 33444433 358888889874 46799999999999988882 3 45
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++.++.|. +++++...|.....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHh
Confidence 68999999 99999999887643
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.5e-05 Score=65.93 Aligned_cols=107 Identities=11% Similarity=0.061 Sum_probs=74.9
Q ss_pred CCc-eeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 426 PGV-SLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 426 ~~~-~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
+++ +++.|+++||+.|..-.+.|.++..++. ++.++.+.+|. ...++..|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 344 5679999999999999999999988873 46666666553 24578889
Q ss_pred CCC-------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-----ccccccC
Q 009096 476 GVR-------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-----STAVVTG 537 (543)
Q Consensus 476 ~v~-------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 537 (543)
|+. .+|+++++. +|+++.... |.+.+++.+.|+.+... .+-+ -..|++|. |..||-.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~-~~~~----~~~p~~w~~~~~~g~~~~~~ 182 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTA-DQYG----VALPEKWPNNYLIKDHVIVP 182 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhh-hhcC----CCcCCCCCCCCCCCCcEEEc
Confidence 984 679888885 899887653 34788888888864221 1111 12477897 5666643
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.5e-05 Score=78.83 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCceee-eeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 426 PGVSLV-HFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv-~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
++++-+ -|.+++|+.|......+.+++...|++..-.+|....++++++|+|+++|++++ ||+.+ +.|. +.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHH
Confidence 456544 557999999999999999999999999999999999999999999999999877 77755 3476 99999
Q ss_pred HHHH
Q 009096 504 EDSA 507 (543)
Q Consensus 504 ~~~~ 507 (543)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.003 Score=64.48 Aligned_cols=283 Identities=14% Similarity=0.038 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCChhHHHHHHHHHHHhC--
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTAL-----GRLTEAVSDCEEAVRL-----DPGYNRAHQRLASLYFRLG-- 130 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 130 (543)
...+|..+++.+-+. .+..+...+|.||..- .|.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888766 5688889999998875 6899999999998771 1225678889999998853
Q ss_pred ---CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 131 ---QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK---IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 131 ---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
++..|+.+|.++.....+.. .+.++.++.. ..++..|..+|..+..... ..+.+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a---------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDA---------QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYEL 372 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchH---------HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh
Confidence 67889999988877444443 3334444333 2478899999999988753 5566777777764
Q ss_pred c----cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 205 L----HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 205 ~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
= .+...|..++.++.+..+ +.....+..+. ....+++..+...+.......-+.......+.
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~-----~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l------- 438 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFY-----EYGVGRYDTALALYLYLAELGYEVAQSNAAYL------- 438 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHH-----HHccccccHHHHHHHHHHHhhhhHHhhHHHHH-------
Confidence 3 467889999999887772 22222221111 11226666666655554444333322211110
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 281 ARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM----GLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 281 ~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
......... ..+...+...+.++.. ..+..+...+|.+|..- .+++.|...|.++.... ..+.+++
T Consensus 439 -~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nl 512 (552)
T KOG1550|consen 439 -LDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNL 512 (552)
T ss_pred -HHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhh
Confidence 001101111 2245666666666554 45577888899988765 46999999999998876 8999999
Q ss_pred HHHHHHc---cCHHHHHHHHHHHHhcCCCC
Q 009096 353 AVSNEKL---GRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 353 a~~~~~~---g~~~~A~~~~~~al~~~p~~ 379 (543)
|.++..- ..+..|.++|.++.+.+...
T Consensus 513 g~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 513 GYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 9998642 22789999999998876643
|
|
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.3e-05 Score=65.35 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=77.2
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.||. .||+.|....|.|.++.+++. ++.++.+.+|. ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35789999999 599999999999999888874 46666665552 235778
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCC
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGE 538 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (543)
.|||. ++|+.+++. +|+++....| .+.+++.+.|+.+.-.. ..+ ...|+.|. |..+|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~-~~~----~~~p~~w~~g~~~~~~~ 185 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHE-EHG----DVCPAQWEKGKEGMNAS 185 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHH-hcC----CCcCCCCCCCCceeccC
Confidence 88987 689877775 9999887665 37888888887543211 111 12477785 66666653
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=65.45 Aligned_cols=98 Identities=22% Similarity=0.271 Sum_probs=88.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcc----------hhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPEN----------AAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
....+...|+-++..|+|.+|...|+.|+.. .|.. ...+.+.+.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999998743 3443 356789999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+..+|.+..+++..|.+....-+..+|...|.+++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998886
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.4e-05 Score=63.54 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=59.7
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------c--HHHHHHcCCC--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------S--LAIAKSEGVR-- 478 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~--~~~~~~~~v~-- 478 (543)
+++++.|| ++||+.|....|.+.++.+++. ++.++.|..+. . ..++..||+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 67777777 8999999999999999988884 47777665542 2 5678889987
Q ss_pred --ccc--EEEEE-ECCeEEEEEcCC-----CHHHHHHHH
Q 009096 479 --TVP--TFKIY-KNGEKLKEMINP-----SHQFLEDSA 507 (543)
Q Consensus 479 --~~P--t~~~~-~~g~~~~~~~g~-----~~~~~~~~~ 507 (543)
++| +++++ ++|+++.+..|. +..+++..|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 333 66666 599999988875 344555444
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=7e-05 Score=54.18 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=56.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHH---HHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA---KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
+..|..+||+.|...+..|++ .++.|-.+|+++.++.. ...|..++|++++ +|. .+.|+++++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 457888999999999998866 47888899998776533 3457789999864 453 4569999999998
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
+..+.
T Consensus 73 ~~~~~ 77 (81)
T PRK10329 73 HPAPH 77 (81)
T ss_pred HHhhh
Confidence 87654
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.8e-05 Score=54.46 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=51.5
Q ss_pred eeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc---CCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 431 VHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE---GVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 431 v~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
..|..++|+.|+.....|++ .++.|-.+|+++.+...+.+ |..++|++++ +|+ ..+.|+++++|.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-----~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~~ 71 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-----HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKAL 71 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHhc
Confidence 46788999999999999976 36788888998877655555 8889999754 554 35668899888764
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.1e-05 Score=63.77 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=53.1
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcCc---------------------HHHHHHcCCC-----
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEES---------------------LAIAKSEGVR----- 478 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~~---------------------~~~~~~~~v~----- 478 (543)
..+++.|++.||+.|+...|.|.++.+++ .++.++.|..+.. ..+.+.||+.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 34455557999999999999999999888 4588888876542 3577777874
Q ss_pred ------------------------cccEEEEEE-CCeEEEEEcC
Q 009096 479 ------------------------TVPTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 479 ------------------------~~Pt~~~~~-~g~~~~~~~g 497 (543)
.+|+++++. +|+++....|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 678777774 7887776655
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00068 Score=64.71 Aligned_cols=187 Identities=15% Similarity=0.027 Sum_probs=118.2
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
..+..+.+..++.-.+|++++|+. +.++..++.- ......+|..+++++++..... ....
T Consensus 178 AWRERnp~aRIkaA~eALei~pdC-AdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~-----------------lg~s 237 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDC-ADAYILLAEE--EASTIVEAEELLRQAVKAGEAS-----------------LGKS 237 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhh-hHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh-----------------hchh
Confidence 345677788888888888888876 4444443321 1223456666666665432221 1111
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSK 324 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 324 (543)
...+....+-+.....+.++-.+. -..+|.+..+.|+.++|++.++..++..|. +..++.+|..++..
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~----------KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYA----------KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE 307 (539)
T ss_pred hhhhcccchhhhhhccccchhhhh----------HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh
Confidence 111111111111111112221111 134799999999999999999999988775 46799999999999
Q ss_pred ccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc-cC---------------HHHHHHHHHHHHhcCCCChHHH
Q 009096 325 MGLWENSIEDCNVALRI-QPNYTKALLRRAVSNEKL-GR---------------WSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 325 ~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~al~~~p~~~~~~ 383 (543)
++.|.++...+.+.-++ -|+.+...|..|.+..+. ++ -..|.+.+.+|++.+|.-+...
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 99999999999997544 356666666666554331 21 2457789999999999887765
|
The molecular function of this protein is uncertain. |
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.1e-05 Score=64.99 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=63.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| +.||+.|....|.|.++.+++. ++.++.|.+|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3568999999 9999999999999988888773 46666665442 346788999
Q ss_pred CC------cccEEEEE-ECCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 477 VR------TVPTFKIY-KNGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 477 v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|. ..|+.+++ ++|+++....+ .+.+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 86 45877777 59999887543 1667777777644
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.7e-05 Score=69.27 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEE--------------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF-------------------------------------------- 460 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~-------------------------------------------- 460 (543)
..+..++.|.-+.||.|+.+.+.+.++.+. ++++
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 356778889999999999999988887542 1221
Q ss_pred EEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 461 ~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+..+++++.++++++||+++||++ +.||+.+ .|+ ++++|+++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 112233456799999999999999 7799765 698 999999999864
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=45.87 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.7
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00052 Score=56.77 Aligned_cols=93 Identities=22% Similarity=0.141 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCC----------------------hhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYN----------------------SILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
..|......++.+.++..+++++.+.... ..+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 35666777889999999999999874321 24455678888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
.+|.+..++..+-.++...|+..+|++.|+++...
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00014 Score=65.22 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ++||+.|....|.|.++.+++. ++.++.|.+|. +..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 456666666 8999999999999988888773 45555555442 3468899
Q ss_pred cCCC-----cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccCC
Q 009096 475 EGVR-----TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTGE 538 (543)
Q Consensus 475 ~~v~-----~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 538 (543)
|||. ..|++++++ +|+++.... |.+.+++.+.|+.+.-. ...+ ..-|++|. |..+|.-.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~-~~~g----~~cPanW~~g~~~~~~~ 248 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFA-EKTG----NVCPVNWKQGDQAMKPD 248 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchh-hhcC----CCcCCCCCcCCceecCC
Confidence 9986 579888886 999987653 33888888888754321 1112 12488895 66666543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.014 Score=56.59 Aligned_cols=300 Identities=15% Similarity=0.072 Sum_probs=154.6
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHH
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--------PGYNRAHQRLAS 124 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 124 (543)
.+.+..+.|+++. +...+...+ +.+...+..+......++++++....+++...- +......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3567788899998 333333322 234666777777778999999999888876542 222222222223
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh-hhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES-RKIGDWKTVLRETDAAIA--IGVDSSPQLVACKAEA 201 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~a~~ 201 (543)
.+..+.+.+++.......... +..... ....|-.+-... .....++.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~--~~~~~~--l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN--PQDLKS--LLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc--HHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 333445555565554322110 111111 111222222111 111112222221122222 1134446678888999
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-H--HHHHHHhHHHH
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-E--IASVLTNVKMV 278 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~--~~~~l~~~~~~ 278 (543)
..+.|+++.|...+.++....+...... ....+..+..+...|+..+|+..++..+....... . ....+.
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~--~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~----- 228 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLL--PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK----- 228 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCC--cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh-----
Confidence 9999999999999999888663332110 01223338889999999999999998887221111 0 000000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM------GLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
.+................ .....+.++..+|...... ++.++++..|+++++++|+...+|+.+
T Consensus 229 -----~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 229 -----SGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred -----hccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 000000000000000000 0001133444444444444 666667777777777777666666666
Q ss_pred HHHHHHcc-----------------CHHHHHHHHHHHHhcCCC
Q 009096 353 AVSNEKLG-----------------RWSEAVRDYEALRRELPG 378 (543)
Q Consensus 353 a~~~~~~g-----------------~~~~A~~~~~~al~~~p~ 378 (543)
|..+...= -...|+..|-+++...++
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 66554431 124588899999998887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=63.93 Aligned_cols=110 Identities=12% Similarity=0.053 Sum_probs=75.8
Q ss_pred CCcee-eeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 426 PGVSL-VHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 426 ~~~~l-v~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
+++++ +.|+++||+.|....+.|.++..++ .++.++.+.+|. ...+++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 34444 5889999999999999999998887 357777776652 23677888
Q ss_pred CCC-------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-----ccccccC
Q 009096 476 GVR-------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-----STAVVTG 537 (543)
Q Consensus 476 ~v~-------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 537 (543)
||. .+|+++++. +|+++.... |.+.+++.+.|+.+-.. .+-+ ...|++|. |..|+..
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~-~~~~----~~~P~~w~~~~~~g~~~~~~ 187 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQLV-DKAG----VVTPANWPNNELIGDKVINP 187 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhh-hhcC----CCcCCCCCCCCCCCCceecC
Confidence 874 368777775 998887654 34888888888865321 1111 22588897 6777665
Q ss_pred CCC
Q 009096 538 ESE 540 (543)
Q Consensus 538 ~~~ 540 (543)
...
T Consensus 188 ~~~ 190 (215)
T PRK13191 188 APR 190 (215)
T ss_pred CCC
Confidence 443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0025 Score=57.56 Aligned_cols=162 Identities=12% Similarity=-0.028 Sum_probs=123.5
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCC-CCCCChhHHHHHHHHHHHHH
Q 009096 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKF-EHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 241 (543)
.+......|++.+|...+++.++..|.+- .++..--.+++.+|+...-...+++++.. +++.|... .+.+++ +..
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl-la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~s-Yv~Gmy--aFg 184 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL-LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYS-YVHGMY--AFG 184 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh-hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHH-HHHHHH--Hhh
Confidence 34455678889999999999999999873 33444467888999999999999999877 66654432 233333 677
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCN 317 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~ 317 (543)
+...|-|++|.+.-+++++++|.+..+.. ..+.++...+++.++.+...+.-..-... ..-|..
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~H------------a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH 252 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASH------------AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH 252 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHH------------HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH
Confidence 88999999999999999999999876653 36888999999999999987754332211 223455
Q ss_pred HHHHHHHccCHHHHHHHHHHHHh
Q 009096 318 RAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~ 340 (543)
-+.++...+.|+.|++.|.+-+-
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHH
Confidence 78889999999999999988663
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0082 Score=61.59 Aligned_cols=309 Identities=13% Similarity=-0.064 Sum_probs=190.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC-----CChhH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDP-----GYNRA 118 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~ 118 (543)
+.-.+.+..-+..+...|..++|+...-.| -+|.- ....-..+.-++..++.. .+...++.-| .++..
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~L 417 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRL 417 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchH
Confidence 334667777778888889999998775443 23322 223333344444455433 3333333333 24566
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC-CCC-hHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCC----H
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH-HPD-PNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS----P 192 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~ 192 (543)
-...+.......++.+|.....++.. -+. .............--.+.+....|+.+.|+...+.++..-|... .
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 67778888889999999888776655 111 11112222233344567777889999999999999998876542 3
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHh----hcCCCcH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF--ENAVSSAEKAG----LLDYSNV 266 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al----~~~p~~~ 266 (543)
......|.+..-.|++++|..+...+.+...............+..+.++...|+. .+....|...- ...|-+.
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 44566888999999999999999998887666656666666777778999999943 33333333222 2222222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCC--h-hHHhHHHHHHHHccCHHHHHHHHHHHH
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY----DSYN--S-ILYCNRAICWSKMGLWENSIEDCNVAL 339 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al 339 (543)
-.... .+.++..--+++.+..-....++. .|.. . -.++.++.++...|++++|.....+..
T Consensus 578 f~~~~------------r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 578 FLVRI------------RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred hHHHH------------HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 21111 233332222366666555555544 2222 2 233578999999999999999999887
Q ss_pred hhCCCC-H----H--HHHHHHHHHHHccCHHHHHHHHHH
Q 009096 340 RIQPNY-T----K--ALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 340 ~~~p~~-~----~--~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
.+-.+. + . ++.-........|+.++|.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 653222 1 1 122222334567899998888777
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=62.07 Aligned_cols=145 Identities=18% Similarity=0.068 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc----HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSN----VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..|+..+.+..+.|+++.|...+.++....+.. +.+. ...+..+...|+..+|+..++..+...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~------------~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVF------------LEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchH------------HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456666999999999999999999998765322 2221 236888999999999999999888732
Q ss_pred CC-C--hhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCC
Q 009096 309 SY-N--SILYCNRAICWSK--MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL------GRWSEAVRDYEALRRELP 377 (543)
Q Consensus 309 p~-~--~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p 377 (543)
.. . ......+...... ............ ......++..+|...... +..+++...|.++.+++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 21 1 1111111100000 000000000000 011246777888888777 899999999999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q 009096 378 GDNEVAESLHNAQVALK 394 (543)
Q Consensus 378 ~~~~~~~~l~~~~~~l~ 394 (543)
+...++..++.....+-
T Consensus 290 ~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKLL 306 (352)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99998888777666553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.7e-05 Score=65.27 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=71.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHcCCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSEGVR 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~~v~ 478 (543)
.+++.|+++||+.|....+.|.++.+++. ++.++.|.+|. ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999988884 47777776553 24688899986
Q ss_pred ----ccc----EEEEE-ECCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-cccccc
Q 009096 479 ----TVP----TFKIY-KNGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVT 536 (543)
Q Consensus 479 ----~~P----t~~~~-~~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 536 (543)
+.| +++++ .+|+++....+ .+.+++.+.|+.+-.. ...+ ...|++|. |..||.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~-~~~~----~~~p~~w~~g~~~~~ 175 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLT-DKHK----VATPANWKPGDDVIV 175 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhH-hhcC----cCcCCCCCCCCceec
Confidence 333 45555 59999877654 3778888888765221 1122 12477784 555554
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=64.38 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=68.8
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHcCCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSEGVR 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~~v~ 478 (543)
.+++.|+++||+.|....+.|.++..++. ++.++.+.+|. ...+++.|||.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 45567899999999999999998888773 46666665442 34678899986
Q ss_pred -------cccEEEEEE-CCeEEEEEc-----CCCHHHHHHHHHhcCCCCCCCCccccCCCCCCccc
Q 009096 479 -------TVPTFKIYK-NGEKLKEMI-----NPSHQFLEDSANLAPSPVYKLPLVTLACSPFGWFS 531 (543)
Q Consensus 479 -------~~Pt~~~~~-~g~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (543)
.+|+++++. +|+++.... |.+.+++.+.|+.+..... -+. ..|++|.-
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~-~~~----~~p~~w~~ 178 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDE-KGV----ATPANWPP 178 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhh-cCc----CcCCCCCC
Confidence 468777775 999877654 4478889888886532211 111 24777863
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.3e-05 Score=63.89 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=57.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhH-hH--HHHHhhC-CCeEEEEEeCcCcHHHHHHc--------CCCcccEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISP-FV--NLLCVRY-PYVHFFKVDVEESLAIAKSE--------GVRTVPTF 483 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p-~l--~~l~~~~-~~~~~~~~d~~~~~~~~~~~--------~v~~~Pt~ 483 (543)
.+.+..+-..++++++.++.+||+-|+.|.. .| .++++-+ .++.-+++|.++.++|...| |.-|.|+.
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce
Confidence 3556666677999999999999999998875 33 2333333 34777889999999998888 88899987
Q ss_pred EEEE-CCeEEEEEcCCCHH------HHHHHHHh
Q 009096 484 KIYK-NGEKLKEMINPSHQ------FLEDSANL 509 (543)
Q Consensus 484 ~~~~-~g~~~~~~~g~~~~------~~~~~~~~ 509 (543)
+++. +|+++.-.+..+++ .+.++|++
T Consensus 107 vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~ 139 (163)
T PF03190_consen 107 VFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLER 139 (163)
T ss_dssp EEE-TTS-EEEEESS--SS-BTTB--HHHHHHH
T ss_pred EEECCCCCeeeeeeecCCCCCCCCccHHHHHHH
Confidence 7775 99998865444442 45555543
|
; PDB: 3IRA_A. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=75.05 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=69.3
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
+..+..|.+++|++|......+++++...|++.+-.+|....++++++|+|.++|++++ ||+.+ ..|. +.+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 34477899999999999999999999999999999999999999999999999999965 77644 4477 8888888
Q ss_pred HHHhc
Q 009096 506 SANLA 510 (543)
Q Consensus 506 ~~~~~ 510 (543)
.+.+.
T Consensus 193 ~~~~~ 197 (517)
T PRK15317 193 KLDTG 197 (517)
T ss_pred HHhcc
Confidence 88764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.037 Score=54.50 Aligned_cols=318 Identities=14% Similarity=-0.018 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHhCCHHHHHHHhcC
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS-LYFRLGQVENARHHLCF 141 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 141 (543)
..+.+...|...|...|-....|...|..-.++|..+.+.+.|++++.--|.....|..+-. +-...|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34667777888888899999999999999999999999999999999999988888876544 33455666666667776
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------ccChhHHHHHh
Q 009096 142 PGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK------LHQNEDADSCL 215 (543)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~------~~~~~~A~~~~ 215 (543)
|..-...+.. ....|-.........+++..-...|++.++. |......++..=.-+.. +...+++...-
T Consensus 140 A~~~vG~dF~----S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 140 AKSYVGLDFL----SDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHhcccchh----ccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 6551111000 0011111222225677888888888888876 32211111111111111 11122222221
Q ss_pred hcCC-----------------------CCCCCCChhHHHHH-HHHHHHHHHHhhcChHHHHHHHHHHhhc-----CCCcH
Q 009096 216 SNMP-----------------------KFEHYSPPSQVKFL-VWLLKLMFNISELRFENAVSSAEKAGLL-----DYSNV 266 (543)
Q Consensus 216 ~~~~-----------------------~~~~~~~~~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 266 (543)
.... ...+........+. .....-.++...-...+.+-.++..++. .|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 1111 11111111111110 1111122333334444555555555532 23332
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-CCCC
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-QPNY 345 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 345 (543)
.-.. .|..-...-...|+++...-.|++++--.....+.|...+.-....|+.+-|...+.++.++ .|..
T Consensus 295 aql~---------nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 295 AQLK---------NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHH---------HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 2211 12234555678899999999999999888888999999999999999999999999888876 4677
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 346 TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 346 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+..+..-+.+....|++..|...+++..+-.|+...+............
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 7888888899999999999999999999988988777654444444443
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.6e-05 Score=50.46 Aligned_cols=55 Identities=27% Similarity=0.494 Sum_probs=42.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
++.|+.+||++|......|++ .++.+..+|++..++ +.+..|..++|++++ ||+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 467899999999999998865 357788888887644 333349999999986 7764
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=65.35 Aligned_cols=166 Identities=10% Similarity=-0.089 Sum_probs=120.5
Q ss_pred HhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh--h--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 128 RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES--R--KIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
-.|+-+.++..+.++.+..+-........+..++.....+ . ...+.+.|.+.+....+..|+. ..+....|+++.
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s-~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS-ALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 4588888888888877633332222222222222222212 1 4567888999999999999986 677777899999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|+.++|++.|++++..... ..+.....++.++.++..+.+|++|..+|.+..+.+.-....+.+ .
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y-----------~ 345 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY-----------L 345 (468)
T ss_pred HhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH-----------H
Confidence 999999999999998854333 333444567778999999999999999999999877665555433 3
Q ss_pred HHHHHHhcCCH-------HHHHHHHHHHhcc
Q 009096 284 RGNNLFSSRRY-------SEACSAYGEGLKY 307 (543)
Q Consensus 284 ~g~~~~~~~~~-------~~A~~~~~~al~~ 307 (543)
.|.++...++. ++|.++|.++-..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 68899999988 8888888777554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0026 Score=63.30 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=134.9
Q ss_pred hHHhHHHHHHHcCCHHHHHHHHHH------HHhcC----CCC-hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHh
Q 009096 84 YRSNRAATLTALGRLTEAVSDCEE------AVRLD----PGY-NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELL 152 (543)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~----p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 152 (543)
.|-.-|.++.+..++++|+++|++ ++++. |.. ...-...|.-+...|+++.|+.+|-++-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------- 733 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------- 733 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------
Confidence 344456666677788888888764 33332 322 1222344667788899999998885542
Q ss_pred HHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 153 KLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
..............|.+|+..++........ ...|-..+.-|...|+|+.|.+.|.++-... + .
T Consensus 734 ------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~~~~-d-------a 797 (1636)
T KOG3616|consen 734 ------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEADLFK-D-------A 797 (1636)
T ss_pred ------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcchhH-H-------H
Confidence 1233334455677888888888776655322 3445667889999999999999988763211 0 1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
...|-+.|+++.|...-+++.. |+..... +...+.-+-+.|+|.+|..+|-..- .|+.
T Consensus 798 ------i~my~k~~kw~da~kla~e~~~--~e~t~~~-----------yiakaedldehgkf~eaeqlyiti~--~p~~- 855 (1636)
T KOG3616|consen 798 ------IDMYGKAGKWEDAFKLAEECHG--PEATISL-----------YIAKAEDLDEHGKFAEAEQLYITIG--EPDK- 855 (1636)
T ss_pred ------HHHHhccccHHHHHHHHHHhcC--chhHHHH-----------HHHhHHhHHhhcchhhhhheeEEcc--CchH-
Confidence 4567888999999888877743 4433222 1235666677777777776662211 1221
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-TKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
-...|-+.|.++.-++...+ ..|++ .+.+..+|.-+...|+...|...|-++
T Consensus 856 -----aiqmydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 11223334444444333322 22332 244455555555555555555544433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1e-05 Score=72.77 Aligned_cols=97 Identities=26% Similarity=0.399 Sum_probs=90.4
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+......+...+..|.+++|++.|..++.++|.....+..++.+++++++...|+..+..+++++|+...-|-..+....
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 33455677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCC
Q 009096 128 RLGQVENARHHLCFPGH 144 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~ 144 (543)
.+|++++|...+..+.+
T Consensus 194 llg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACK 210 (377)
T ss_pred HhhchHHHHHHHHHHHh
Confidence 99999999999988876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00061 Score=63.01 Aligned_cols=137 Identities=14% Similarity=-0.022 Sum_probs=105.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA-LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
+|........+.+..+.|...|.+|++..+.....|...|.+-+. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777778888889999999999997766678899999999777 5666669999999999999999999999999999
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
.|+.+.|...|++++........ .-..|......-...|+.+......+++.+..|+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQ----SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHH----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999983222210 01123334444566789999999999998887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=54.71 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=63.7
Q ss_pred hhhhhhccCCCCceeeeeeCC--CCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEA--SSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~--~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.++..+..++..++.|..+ .|+-+..+.=++-++.+.+++ +..+-++-+....|+.+|||...|+++++++|+.+
T Consensus 16 ~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 16 ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEE
T ss_pred hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEE
Confidence 455566666666666666553 345555555688999999988 67777777788899999999999999999999999
Q ss_pred EEEcCC
Q 009096 493 KEMINP 498 (543)
Q Consensus 493 ~~~~g~ 498 (543)
..+.|.
T Consensus 96 G~i~gi 101 (107)
T PF07449_consen 96 GAIEGI 101 (107)
T ss_dssp EEEESS
T ss_pred EEecCe
Confidence 999886
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0035 Score=64.01 Aligned_cols=265 Identities=11% Similarity=-0.035 Sum_probs=171.7
Q ss_pred cCHHHHHHHhhHHHhc-----CCHHHHHHHHHHHHhc-----CCcchhhHHhHHHHHHHcC-----CHHHHHHHHHHHHh
Q 009096 46 VDAEEVKRAGNEMYRK-----GNFVEALKLYDKAISM-----SPENAAYRSNRAATLTALG-----RLTEAVSDCEEAVR 110 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~ 110 (543)
.+..+...+|.+++.- .+.+.|+.+|+.+... .-.++.+.+.+|.+|.... +++.|+.+|.++.+
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4666777888887754 6899999999999771 1125678899999999853 78889999999987
Q ss_pred cCCCChhHHHHHHHHHHHhC---CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhh----hhcCCHHHHHHHHHHH
Q 009096 111 LDPGYNRAHQRLASLYFRLG---QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES----RKIGDWKTVLRETDAA 183 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~~ 183 (543)
.. ++.+.+.+|.++..-. ++..|..+|..|.+..... +.+.++.++ ....+...|..++.++
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---------A~~~la~~y~~G~gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---------AIYRLALCYELGLGVERNLELAFAYYKKA 390 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---------HHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 64 5778889999988766 5789999998887644333 234444443 3456889999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc-cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHH
Q 009096 184 IAIGVDSSPQLVACKAEAHLKL-HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKA 258 (543)
Q Consensus 184 l~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~a 258 (543)
.+.++ +.+...++..+..- +.++.+...+.......-......... +......... ..+...+...+.++
T Consensus 391 A~~g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~a 465 (552)
T KOG1550|consen 391 AEKGN---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--LLDQSEEDLFSRGVISTLERAFSLYSRA 465 (552)
T ss_pred HHccC---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH--HHHhccccccccccccchhHHHHHHHHH
Confidence 99873 33333334433322 666666555544433322221111000 0000000111 11334455555554
Q ss_pred hhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHH
Q 009096 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS----RRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWEN 330 (543)
Q Consensus 259 l~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~ 330 (543)
......... ..+|.+|+.. .+++.|...|.++.... +...+++|.++.. .. ...
T Consensus 466 ~~~g~~~a~--------------~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~ 527 (552)
T KOG1550|consen 466 AAQGNADAI--------------LKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHL 527 (552)
T ss_pred HhccCHHHH--------------hhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHH
Confidence 333222221 2367776554 46999999999998776 8999999999875 23 789
Q ss_pred HHHHHHHHHhhCCC
Q 009096 331 SIEDCNVALRIQPN 344 (543)
Q Consensus 331 A~~~~~~al~~~p~ 344 (543)
|.++|.++.+.+..
T Consensus 528 a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 528 AKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHhcCch
Confidence 99999999887654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0055 Score=57.81 Aligned_cols=207 Identities=17% Similarity=0.097 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCc--chhhHHhHHHHHHHcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHH---hCCHH
Q 009096 63 NFVEALKLYDKAISMSPE--NAAYRSNRAATLTALGRLTEAVSDCEEAVRL----DPGYNRAHQRLASLYFR---LGQVE 133 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~ 133 (543)
+..+++.-.++-+. +|. +++...++=.+|....+|+.-++..+..-.+ -++.+...+.+|.++.+ .|+.+
T Consensus 121 ~l~~~L~~i~~rLd-~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 121 ELAKELRRIRQRLD-DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHhhC-CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 44455555555444 233 3556666667788888888777777766555 34456667777777777 78888
Q ss_pred HHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhH
Q 009096 134 NARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNED 210 (543)
Q Consensus 134 ~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~ 210 (543)
+|+..+..++. ..+++.+--...+..-.-...........++|+..|.++.+.+|+..+ -.+++.++...|...+
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~--GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS--GINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc--hHHHHHHHHHcCCccc
Confidence 88888777444 333443322222211111111122344589999999999999876532 3345666666665333
Q ss_pred HHHHhhcCC--------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 211 ADSCLSNMP--------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 211 A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
....++++. +..... ....+...-..+.+..-.|++++|+..++++++..|........+.+
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~--~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n 347 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLE--KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN 347 (374)
T ss_pred chHHHHHHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence 222111111 111111 11111222233667777999999999999999999887765544433
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.2e-05 Score=65.76 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeE---------------------------------------------E
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVH---------------------------------------------F 460 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~---------------------------------------------~ 460 (543)
.+..++.|..+.|++|+.+.+.+.+.. .++. .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~---~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA---DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc---CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 568888999999999999998887511 1111 2
Q ss_pred EEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHH
Q 009096 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 461 ~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 507 (543)
+..+++++..+++++||.++||++ +.||+. +.|+ ++++|.++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 223334456799999999999997 888976 4688 888888764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00016 Score=59.40 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------cHHHHHHcCCCc
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------SLAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------~~~~~~~~~v~~ 479 (543)
.++++++.|| +.||+.|....|.+.++..++ .++.|+.|..+. ...+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4678999999 689999999999999998876 357777666542 246778889887
Q ss_pred cc---------EEEEEE-CCeEEEEEcCC
Q 009096 480 VP---------TFKIYK-NGEKLKEMINP 498 (543)
Q Consensus 480 ~P---------t~~~~~-~g~~~~~~~g~ 498 (543)
.| +++++. +|+++.+..|.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecC
Confidence 76 666664 79999998887
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00037 Score=58.30 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=30.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFK 462 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~ 462 (543)
.+..++.|+.++||+|+.+.|.+.++..+++++.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEE
Confidence 4677889999999999999999999887776654433
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=61.20 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=34.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~ 466 (543)
.+++++|.|||+||+.|.. .|.|+++.++|. ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3589999999999999975 789999999985 4888888764
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=60.00 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=35.6
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhCC-----CeEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRYP-----YVHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~~-----~~~~~~~d~~ 466 (543)
.++++++.||++||++ |....|.+.++.+++. ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999998 9999999999988884 3888888654
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=51.06 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---HHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---LAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 502 (543)
...-++.|..+||+.|......|++. ++.|..+|+++. ..+....|..++|.++ .||+.+. |. ++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig---G~--~~ 73 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG---GS--DE 73 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc---CH--HH
Confidence 34457789999999999999998753 566677787755 4455567899999985 4787533 43 45
Q ss_pred HHHHH
Q 009096 503 LEDSA 507 (543)
Q Consensus 503 ~~~~~ 507 (543)
|.++|
T Consensus 74 l~~~l 78 (79)
T TIGR02190 74 LEAYL 78 (79)
T ss_pred HHHHh
Confidence 55443
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=43.11 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666666666666666666666653
|
... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0095 Score=49.82 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-TKALLRRAVSNE 357 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 357 (543)
..++..+...+++++|+..++.++....+. ..+-.+||.+..++|.+++|+..+...... .. +..--.+|.++.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill 170 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHH
Confidence 468999999999999999999998765443 456778999999999999999988764322 21 233567899999
Q ss_pred HccCHHHHHHHHHHHHhcCCCC
Q 009096 358 KLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~ 379 (543)
..|+.++|+..|+++++.+++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999998443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.12 Score=53.97 Aligned_cols=304 Identities=13% Similarity=0.059 Sum_probs=157.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch--hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA--AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
..+|+....-..+++..+-..+-++.+++++-.+.-.. ..+.++-..-.-.-+.....++..+.-..+.. ..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~------~i 1054 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP------DI 1054 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch------hH
Confidence 34666666667777888888888888888764322111 11111111111223444455555544332221 24
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.+....+-|++|...|.+.-. +.... . ......+..+.|.+..++. +.+.+|..+|.+-
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~--n~~A~------~------VLie~i~~ldRA~efAe~~------n~p~vWsqlakAQ 1114 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM--NVSAI------Q------VLIENIGSLDRAYEFAERC------NEPAVWSQLAKAQ 1114 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc--cHHHH------H------HHHHHhhhHHHHHHHHHhh------CChHHHHHHHHHH
Confidence 5556666677777777755321 00000 0 0011223333333333222 1256677777777
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc---HHHHHHHHh---HH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN---VEIASVLTN---VK 276 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~---~~ 276 (543)
++.|...+|++.|-++ +++..+... ..+....|.|++-+.++..+-+...+. ......+.. +.
T Consensus 1115 L~~~~v~dAieSyika-----dDps~y~eV------i~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1115 LQGGLVKDAIESYIKA-----DDPSNYLEV------IDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HhcCchHHHHHHHHhc-----CCcHHHHHH------HHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH
Confidence 7777777777766655 222222222 445556666666666665554332221 111111111 00
Q ss_pred HHH---------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC----
Q 009096 277 MVV---------RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP---- 343 (543)
Q Consensus 277 ~~~---------~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 343 (543)
..+ .....|.-++..|.|+.|.-+|.. ..-|..|+..+..+|+|+.|....++|-....
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 000 023457777777777777776653 33466677777778888887777776543210
Q ss_pred ---------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 344 ---------------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 344 ---------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
-+.+-+-.+...|...|-+++-+..++.++-+...+-.....|+.+....
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 01233445556677777788888888777777665555555555444433
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00045 Score=70.24 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=68.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.-+..|.++.|++|......+.+++...|++.+-.+|....++++++|+|.++|++++ ||+.+ ..|. +.+++.+.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~~ 194 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLEK 194 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999976 77644 4577 88888888
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
+...
T Consensus 195 l~~~ 198 (515)
T TIGR03140 195 LEET 198 (515)
T ss_pred Hhhc
Confidence 7765
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00057 Score=44.22 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+.++.+|..+.++|+|++|..+.+.++++.|+|.++......+...+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 457788888999999999999999999999999888877666655554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=63.67 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
|......|+...|+.++..++...|....+. +.++++++.+-|-.-.|-..+.+++.+....+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~-----------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVP-----------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhccc-----------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 4444556777888888888888877765543 24589999999999999999999999998889999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
|..+..+.+.+.|++.|+.|++++|+++..-..+-.+-+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999877655554444
|
|
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=51.99 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=43.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHHHHcCCCcccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
++.|.++|||.|..+.+.|+++.. ...++.++.+.. ..+.+..|+.++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 467889999999999999999765 345666666544 245566789999996 5678653
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.027 Score=58.58 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhc
Q 009096 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (543)
-++.+.|.++-++. +.+..|..+|.+....|...+|++.|-++ +++..|.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35555555554443 34566666666666666666666666553 445556666666666666666666655
Q ss_pred CCCC
Q 009096 141 FPGH 144 (543)
Q Consensus 141 ~a~~ 144 (543)
-+.+
T Consensus 1158 MaRk 1161 (1666)
T KOG0985|consen 1158 MARK 1161 (1666)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0036 Score=54.60 Aligned_cols=168 Identities=8% Similarity=-0.066 Sum_probs=128.1
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
....|+.....++.++|.+...+ ..+-.++..+ .+..+-++++.+.++.+|.+..+|.. +-
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW------~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH------------Rr 119 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVW------QYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH------------RR 119 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHH------HHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH------------HH
Confidence 34567777888888888884433 3333344333 45778889999999999999998854 34
Q ss_pred HHHHhcCCHH-HHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-c----
Q 009096 286 NNLFSSRRYS-EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK-L---- 359 (543)
Q Consensus 286 ~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~---- 359 (543)
.+....|+.. .-++..+.++..+..+..+|..+-.+....+.++.-+.+..+.++.+-.|-.+|..+-.+... .
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 4556667777 788999999999999999999999999999999999999999999887777777655433322 1
Q ss_pred -cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 360 -GRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 360 -g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
-..+.-+.+..+.+.+.|+|..+|..|.-++..
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 134556788889999999999999988766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0065 Score=50.16 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=71.8
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcH-----H-HHHH----HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNV-----E-IASV----LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~-~~~~----l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
|......++.+.++..+++++.+...+. . .|.. ...-.....+..++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 5555666777888888888875543221 0 1110 0111223335567888999999999999999999999
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
|.+..++..+..+|...|+..+|+..|++...
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00018 Score=42.17 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.5
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56788888888888888888888888888875
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.025 Score=50.74 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=74.6
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHH
Q 009096 85 RSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRC 164 (543)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (543)
-+.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-.......+.. +...+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~---l~a~i~ll 213 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG---LQAQIELL 213 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH---HHHHHHHH
Confidence 334444555556666666666666666666666666666666666666666655544322111111111 11111111
Q ss_pred HhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC
Q 009096 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS 225 (543)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 225 (543)
......++. ..+.+.+..+|++ ....+.++..+...|+.++|.+.+-.+++.+...
T Consensus 214 ~qaa~~~~~----~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 214 EQAAATPEI----QDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHhcCCCH----HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 111112221 2335556677877 6778888999999999999999988887765544
|
|
| >PTZ00253 tryparedoxin peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=58.45 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=72.5
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.||. .||+.|....+.+.++.+++. ++.++.|.+|. ...+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 5688889995 889999998888998888885 57777776652 2358889
Q ss_pred cCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhcCCCCCCCCccccCCCCCCcc-ccccccC
Q 009096 475 EGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLAPSPVYKLPLVTLACSPFGWF-STAVVTG 537 (543)
Q Consensus 475 ~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 537 (543)
||+. .+|+.+++. +|+++....+ .+.+++.+.|+....... . ....|..|. |..|++.
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~~~~~----~-~~~cp~~w~~g~~~~~~ 186 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQFVEK----H-GEVCPANWKKGDPTMKP 186 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhhhHHh----c-CCEeCCCCCcCCccccC
Confidence 9986 357777665 9998877655 356666666664432221 1 122477787 5666553
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0004 Score=52.10 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=50.3
Q ss_pred CCCCceeeeeeC--------CCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcH-------HHHHHcCC-CcccEEEEE
Q 009096 424 SSPGVSLVHFKE--------ASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESL-------AIAKSEGV-RTVPTFKIY 486 (543)
Q Consensus 424 ~~~~~~lv~f~~--------~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~-------~~~~~~~v-~~~Pt~~~~ 486 (543)
.+++.+.+.|.+ +|||.|....|.+.+.-+..|. +.|+.+++..-+ ..-...++ .++||++=+
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw 102 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRW 102 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEE
Confidence 345557777875 6999999999999988886664 999999986432 34455666 899999999
Q ss_pred EC
Q 009096 487 KN 488 (543)
Q Consensus 487 ~~ 488 (543)
++
T Consensus 103 ~~ 104 (128)
T KOG3425|consen 103 KR 104 (128)
T ss_pred cC
Confidence 85
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00057 Score=61.72 Aligned_cols=83 Identities=10% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe----------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD---------------------------------------- 464 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d---------------------------------------- 464 (543)
..+.+++.|.-+.||.|+.+.+.+..+.+. .++++..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 345778889999999999998887765543 222221111
Q ss_pred ----------CcCcHHHHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHh
Q 009096 465 ----------VEESLAIAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 465 ----------~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
++++..+++++||+++||+++-. +| .+..+.|+ ++++|.+++..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhCC
Confidence 01134588899999999999986 45 44567799 89999988753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0072 Score=50.50 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
-..+|..+...|++++|+..++.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~ 117 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA 117 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 34556666666677777766666654
|
|
| >PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00043 Score=50.23 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=58.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC--eEEEEEcCC-CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG--EKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g--~~~~~~~g~-~~~~~~~~ 506 (543)
++.|..+.|+-|..+...+..+..+.+ +.+-.+|+++++.+..+|+. .+|.+.+-..+ .......+. +.+++.++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~ 79 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRAW 79 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHHH
Confidence 567889999999999999998766654 89999999999999999996 79985554311 112333356 99999998
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
|+
T Consensus 80 L~ 81 (81)
T PF05768_consen 80 LE 81 (81)
T ss_dssp HH
T ss_pred hC
Confidence 85
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A. |
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00061 Score=48.23 Aligned_cols=57 Identities=25% Similarity=0.457 Sum_probs=42.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|.++||++|+.+.+.|.+.. +.|..+|++...+ +.+..+..++|++ |.||+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 46788999999999999998763 6777888887654 3444577788877 45887655
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=55.38 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=61.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC--CC-eEEEEEeCcCc---------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY--PY-VHFFKVDVEES--------------------------------- 468 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~-~~~~~~d~~~~--------------------------------- 468 (543)
..+++++.|+...||+|..+.+.+.++.+++ ++ +.|...++-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3567888999999999999999999998888 44 77776655210
Q ss_pred -----------------------------------HHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 469 -----------------------------------LAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 469 -----------------------------------~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
...+.+.||.++||+++ ||+.+ .|. +.+++.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 13456669999999998 99875 566 99999999975
|
... |
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=55.43 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=74.9
Q ss_pred hhhhhhhccCCCCc-eeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCC--cccEEEEEE--C
Q 009096 415 SLEKFKAAISSPGV-SLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVR--TVPTFKIYK--N 488 (543)
Q Consensus 415 ~~~~~~~~i~~~~~-~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~--~~Pt~~~~~--~ 488 (543)
+...+......+.+ +++.|...-......+...+..++.++.+ +.|+.+|++..+.++..+||. .+|+++++. +
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~ 162 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNK 162 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTT
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCC
Confidence 34566666666655 77777666667778888889999999987 999999999999999999998 899999998 5
Q ss_pred CeEEEEEcCC-CHHHHHHHHHh
Q 009096 489 GEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
|+......|. +++.|.+||+.
T Consensus 163 ~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 163 GKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEE--SSCGCHHHHHHHHHH
T ss_pred CcEEcCCCCCCCHHHHHHHhcC
Confidence 5543334677 99999999863
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.057 Score=47.58 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=146.9
Q ss_pred cCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHH
Q 009096 61 KGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (543)
..+.++|+..|++.+++.+.-. .++-.+..+++.+++|++-+..|++.+..- .-|. ..+-.++++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI--------kSAV---TrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI--------KSAV---TRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------HHHH---hccccHHHH
Confidence 4488889999999988877643 456667778888888888888888776421 1110 111111111
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI----GDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
... +......... .-|+..+..++.+-.. ...-..-..+|.+|+..++|.+-.
T Consensus 109 N~I---------------------lDyiStS~~m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~ 165 (440)
T KOG1464|consen 109 NSI---------------------LDYISTSKNMDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQ 165 (440)
T ss_pred HHH---------------------HHHHhhhhhhHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHH
Confidence 111 0000011111 1122222222222111 000111224788999999888777
Q ss_pred HHhhcCCCCCCC-----C-ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHH
Q 009096 213 SCLSNMPKFEHY-----S-PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 213 ~~~~~~~~~~~~-----~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~ 284 (543)
+.+++.-..... + ..-...+..+....++|-..++-.+-...|++++.+... ++.+......+ -
T Consensus 166 KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC--------G 237 (440)
T KOG1464|consen 166 KILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC--------G 237 (440)
T ss_pred HHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc--------C
Confidence 766654332211 1 111122333444467788888888888889999866543 33333222221 4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC-----hh--HHhHHHHHHHHccC----HHHHHHHHHHHHhhCCCCHHH--HHH
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYN-----SI--LYCNRAICWSKMGL----WENSIEDCNVALRIQPNYTKA--LLR 351 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~--~~~~la~~~~~~g~----~~~A~~~~~~al~~~p~~~~~--~~~ 351 (543)
|..+.+.|+|++|-..|-+|.+..... .. -|.-||..+.+.|= -++|.. ..++|+. ..+
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP--------yKNdPEIlAMTn 309 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP--------YKNDPEILAMTN 309 (440)
T ss_pred CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC--------CCCCHHHHHHHH
Confidence 677888999999999998888764332 22 23335555555441 111111 1234443 445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHH
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELP----GDNEVAESLHNAQVAL 393 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~l 393 (543)
+..+|.. ++ +..|++.++.+. ++|.++..+..+...+
T Consensus 310 lv~aYQ~-Nd----I~eFE~Il~~~~~~IM~DpFIReh~EdLl~ni 350 (440)
T KOG1464|consen 310 LVAAYQN-ND----IIEFERILKSNRSNIMDDPFIREHIEDLLRNI 350 (440)
T ss_pred HHHHHhc-cc----HHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 5555543 22 344666666554 4677776666555444
|
|
| >PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00096 Score=60.43 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=70.6
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccc-----hhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEE-----ISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~-----~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..+|.+++..-...++.|+.+--..--. +...+-+|+++. .++.|..||..+...+++++|+...+++.+
T Consensus 39 LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyV 118 (383)
T PF01216_consen 39 LNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYV 118 (383)
T ss_dssp E-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEE
T ss_pred cchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEE
Confidence 355778888888888888888876332222 112233444433 569999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+.+..- |. +++.+.+||-.++..+
T Consensus 119 fkd~~~IEyd-G~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 119 FKDGEVIEYD-GERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp EETTEEEEE--S--SHHHHHHHHHHHHSSS
T ss_pred EECCcEEEec-CccCHHHHHHHHHHhcccc
Confidence 9999887765 87 9999999998776544
|
It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A. |
| >TIGR02189 GlrX-like_plant Glutaredoxin-like family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=52.17 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=40.0
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+|||.|..+...|++. ++.|..+|++..+ .+....|..++|.+ |.+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc
Confidence 6678999999999999988875 3444556665442 24444578899997 56786543
|
This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00054 Score=39.76 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666677777777777777777777666665
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0087 Score=56.59 Aligned_cols=151 Identities=12% Similarity=-0.016 Sum_probs=110.9
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCC------------HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHH
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGN------------FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 104 (543)
+++.+..+|.|.+.|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..+-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556788899999999998876544322 46778899999999999999999988898999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH---hCCHHHHHHHhcCCCC-------CC----ChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFR---LGQVENARHHLCFPGH-------HP----DPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
+++++..+|++...|...-..... .-.++.....|.++++ .. ..........+......+......
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 999999999999888765444333 2345666666665554 10 011112333445566677777788
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009096 171 GDWKTVLRETDAAIAIG 187 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~~ 187 (543)
|..+.|+..++..++.+
T Consensus 168 G~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 168 GYTERAVALWQALLEFN 184 (321)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 88888888888888775
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0038 Score=56.62 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=62.3
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
....++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4566778888888999999999999999999988888888999999999999999999999999888887633
|
|
| >TIGR02181 GRX_bact Glutaredoxin, GrxC family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00098 Score=48.27 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=40.7
Q ss_pred eeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEE
Q 009096 431 VHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 431 v~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|+.+||+.|......|++. ++.+..+|++..++ +.+..|..++|++ |.+|+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 568889999999999999864 46666677776654 3444588899997 4577643
|
This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0099 Score=51.96 Aligned_cols=131 Identities=12% Similarity=0.024 Sum_probs=109.8
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
.+...-..|+..-+.++.++|.+..+|.....+ .-....+..+-++++.+.++-+|.+..+|..+-.+.
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i-----------L~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI-----------LRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV 122 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 344455678889999999999999998654332 122233477788999999999999999999999999
Q ss_pred HHccCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 323 SKMGLWE-NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 323 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
...|++. .-++..+.++..+..+..+|..+-.+....+.++.-+.+....++.+--|-.+|.
T Consensus 123 e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 9999988 8899999999999999999999999999999999999999999998776655543
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0039 Score=49.86 Aligned_cols=105 Identities=8% Similarity=0.132 Sum_probs=76.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCC--Cc-cc-cchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCC--ccc
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEAS--SE-KC-EEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVR--TVP 481 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~--c~-~c-~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~--~~P 481 (543)
+.++++.+.+++.....+.-++.|.-.- |. .+ ..+...+.++++++.+ +.|+.+|.+....+.+.|||. .+|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 5566777777776655666666664321 11 12 3456788999999964 899999999999999999996 499
Q ss_pred EEEEEECCeEEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 482 TFKIYKNGEKLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 482 t~~~~~~g~~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+++++...+.... ..|. +.+.|.+|++.++...
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred EEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 9999974332333 5576 9999999999987654
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0026 Score=52.63 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=76.6
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
|.+..++..+...++... +-.|+|..|...-+.|.-+...|+.++.+||.++|+++-.+..-. .|-=...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIp---NYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIP---NYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccC---CCcccCCCeEEE
Confidence 557777777777666533 458889999999999999999999999999999999986543211 233447899999
Q ss_pred EECCeEEEEEc------CC--CHHHHHHHHHhc
Q 009096 486 YKNGEKLKEMI------NP--SHQFLEDSANLA 510 (543)
Q Consensus 486 ~~~g~~~~~~~------g~--~~~~~~~~~~~~ 510 (543)
|..|.+...++ |. +++++..++-+.
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 99997765544 34 789999888764
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.022 Score=43.24 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=69.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccC---CC---------ChhHHhHHHHHHHHccCHHHHHHHHHHHHh-------hCCC
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYD---SY---------NSILYCNRAICWSKMGLWENSIEDCNVALR-------IQPN 344 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~ 344 (543)
.|.-....|-|++|...++++++.. |. ++-.+..|+.++..+|+|++++..-.+++. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 4556677899999999999998753 22 245677799999999999988887777774 4555
Q ss_pred CH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 345 YT----KALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 345 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
.. .+.+.+|..+..+|+.++|+..|+++-++
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44 45578999999999999999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0044 Score=51.80 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=81.4
Q ss_pred CCeEEeehhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+.++.+.+.|.+.+... -.++|..|.+.-.-|..+...+.-|+++||-++|+++-..-- ...++|...++||++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~-gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT-GASDRFSLNVLPTLL 216 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc-cchhhhcccCCceEE
Confidence 3467788889999988653 366778899999999999999999999999999999975433 457899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|++|+.+.-++.. ..-++..||+.+
T Consensus 217 iYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 217 IYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999988755432 445566666654
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=57.50 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+.+.-..+.|+.++|..+|+.|+.+.|++++++...|......++.-+|-.+|-+++.++|.+.+++.++++..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 35666778999999999999999999999999999999999999999999999999999999999998887653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.22 Score=46.10 Aligned_cols=122 Identities=19% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----Ccc----hhhHHhHHHHHHHcC-CHHHHHHHHHHHHhc----CC---C-------
Q 009096 58 MYRKGNFVEALKLYDKAISMS----PEN----AAYRSNRAATLTALG-RLTEAVSDCEEAVRL----DP---G------- 114 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 114 (543)
...+|+++.|..++.|+-... |+. ...+++.|......+ +++.|...++++.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356889999999998886543 433 356778888888888 999999999988876 21 1
Q ss_pred ChhHHHHHHHHHHHhCCHHHH---HHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 115 YNRAHQRLASLYFRLGQVENA---RHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A---~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
...++..++.+|...+.++.. ...++.+.. .+++... +.-.-....+.++.+.+.+.+.+++..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~--------~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV--------FLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH--------HHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 124567778888877766543 333333322 2222211 1112222223677788888888777754
|
It is also involved in sporulation []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0069 Score=57.92 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR-WSEAVRDYEALR 373 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 373 (543)
..-...|+.+....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+.-+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3446788999999999999999999888888889999999999999999999999999988887776 999999999999
Q ss_pred hcCCCChHHHHHHHHHHHH
Q 009096 374 RELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 374 ~~~p~~~~~~~~l~~~~~~ 392 (543)
+.+|++|.+|....+....
T Consensus 168 R~npdsp~Lw~eyfrmEL~ 186 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELM 186 (568)
T ss_pred hcCCCChHHHHHHHHHHHH
Confidence 9999999999877765443
|
|
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=44.82 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=46.5
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH---HHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA---IAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|..+||+.|......|++. ++.+..+|++.... +....|..++|.+ |.||+.+. | .++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g--~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---G--SDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---C--HHHHHHH
Confidence 5678899999999999888863 56677777776542 3344589999997 56787543 3 3456555
Q ss_pred H
Q 009096 507 A 507 (543)
Q Consensus 507 ~ 507 (543)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PHA03050 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=49.04 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=43.0
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-Cc----HHHHHHcCCCcccEEEEEECCeEEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ES----LAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~----~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
-++.|..+|||.|......|++..-+++.+..+.+|-. .. ..+.+.-|-.++|++ |.||+.+.
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iG 81 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIG 81 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEe
Confidence 36779999999999999999887554444444444421 12 345555688899998 55787543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.17 Score=49.22 Aligned_cols=191 Identities=12% Similarity=-0.000 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc---ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH---QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
-+++..+|++++.........+++.++..-...- .++.....+++++.....++.. .++..-..-.+..-..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-----v~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-----VYCQYMNFIRRAEGLK 383 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-----ehhHHHHHHHHhhhHH
Confidence 4556666777665433222333333332222211 2555566666666554443221 1222233344455567
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHH
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWE 329 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 329 (543)
.|...|.++-+.......++..- .-.-|...++.+-|...|+-.++..++++..-......+..+++-.
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~-----------A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~ 452 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAA-----------ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDN 452 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHH-----------HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcch
Confidence 77888888765433322222110 1223667899999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHhh--CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 330 NSIEDCNVALRI--QPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 330 ~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
.|...|++++.. .|+ ..+.|-..-..-..-|+...+++.=++-....|.+
T Consensus 453 N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 453 NARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred hHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 999999999987 443 33677777777778899988888887777777743
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.29 Score=46.61 Aligned_cols=330 Identities=10% Similarity=0.003 Sum_probs=178.8
Q ss_pred CCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH------
Q 009096 36 NNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV------ 109 (543)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 109 (543)
.++..++.+|.+.-.|+.+...+-.+|.+++-.+.|++...-.|--+.+|...-.--...+++......|.+++
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 35567889999999999999999999999999999999988877665555432222222233333333333322
Q ss_pred ------------------------------------hcCCCChhHHHHHHHHHH---------HhCCHHHHHHHhcCCCC
Q 009096 110 ------------------------------------RLDPGYNRAHQRLASLYF---------RLGQVENARHHLCFPGH 144 (543)
Q Consensus 110 ------------------------------------~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~ 144 (543)
-.+|.....|...+..+. .+.+.+.-...|.+++.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 234555555555544432 22334455566777776
Q ss_pred CC-ChH--HHhHHHHHHHHHHHHHhh----hhcCCHHHHHHH--------------------------------------
Q 009096 145 HP-DPN--ELLKLQSFEKHLNRCAES----RKIGDWKTVLRE-------------------------------------- 179 (543)
Q Consensus 145 ~~-~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~-------------------------------------- 179 (543)
.| +.- -|......+.-++.+..- ...--|-.|...
T Consensus 190 tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIk 269 (660)
T COG5107 190 TPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIK 269 (660)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhh
Confidence 22 211 111111111111111000 000011111111
Q ss_pred ---------------------HHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHH
Q 009096 180 ---------------------TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238 (543)
Q Consensus 180 ---------------------~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++++..-| ..+.+|+.....+...++-+.|+...++.+...|.- ...+
T Consensus 270 wE~en~l~L~~~~~~qRi~y~~~q~~~y~~-~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~~l------ 339 (660)
T COG5107 270 WEMENGLKLGGRPHEQRIHYIHNQILDYFY-YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TMFL------ 339 (660)
T ss_pred HhhcCCcccCCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---heeH------
Confidence 222222222 235566666666777888889999999998888872 2222
Q ss_pred HHHHHhhcChHHHHHHHHHHhh--------cC-------CCcHHH-HHHHHhHHHHHHH----HHHHHHHHhcCCHHHHH
Q 009096 239 LMFNISELRFENAVSSAEKAGL--------LD-------YSNVEI-ASVLTNVKMVVRA----RTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~--------~~-------p~~~~~-~~~l~~~~~~~~~----~~~g~~~~~~~~~~~A~ 298 (543)
+..+...++-+.-..+|+++.+ .+ .+++.. ..++ ++....+ -..-+...+..-.+.|.
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell--~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELL--LKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHH--HHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 4444444554444455555431 00 011100 0000 0000000 00111222333466777
Q ss_pred HHHHHHhccCCCChhHHhHHHHH-HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 299 SAYGEGLKYDSYNSILYCNRAIC-WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 299 ~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
..|.++-+..-....++..-|.+ +...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-.
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 77777765542334444443433 55678899999999999999988876666666677788888899999988776533
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.42 Score=48.14 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=77.6
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhH----------HhHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYR----------SNRAATLTALGRLTEAVSDCEEAVRLD-- 112 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~-- 112 (543)
..++..|..+|......-.++.|...|-+.-.. |. .... ...|.+-.--|++++|.+.|-.+-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 347888999998888888888888877665221 11 1111 223333344466777766664331110
Q ss_pred -----------------------C---CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHh
Q 009096 113 -----------------------P---GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166 (543)
Q Consensus 113 -----------------------p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 166 (543)
. ..-.++.++|..+..+..+++|.++|.+.-. .-++..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------------~e~~~ec 831 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------------TENQIEC 831 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hHhHHHH
Confidence 0 1134566666666666666666666654432 1112222
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhc
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSN 217 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 217 (543)
++...+|++-. .....-|++ ..++-.+|.++...|.-++|.+.|-+
T Consensus 832 ly~le~f~~LE----~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 832 LYRLELFGELE----VLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhhhHH----HHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 23333332221 112222433 34455566666666666666665543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.54 Score=54.21 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-CC----------C--
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ-PN----------Y-- 345 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~-- 345 (543)
..|.+.|.+....|+++.|..+.-+|.+.. -+.++...|..+.+.|+-..|+..+++.+..+ |+ .
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n 1748 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVN 1748 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhh
Confidence 345678999999999999999999888776 57899999999999999999999999999664 22 1
Q ss_pred ----HHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 346 ----TKALLRRAVSNEKLGRW--SEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 346 ----~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
..+.+..+.-....|++ ++-+++|..+.++.|...+-...++
T Consensus 1749 ~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1749 LLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 12344444555555553 4457889999999996555444444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=60.31 Aligned_cols=103 Identities=32% Similarity=0.354 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM---GLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
.+..|.-.+..+....|+..|.++++..|+....+.+++.++++. |+.-.|+..+..+++++|....+|+.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 344566566667788999999999999999999999999998875 57788999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
.++++.+|+++...+....|.+....
T Consensus 457 el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 457 ELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 99999999999998888888665443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.34 Score=46.31 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=81.9
Q ss_pred HHHHHhhcC-hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHh---------c
Q 009096 239 LMFNISELR-FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS--AYGEGL---------K 306 (543)
Q Consensus 239 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al---------~ 306 (543)
|.-+...|. -++|+..++.+++..|.+........ .+-...|.+|+. .+.+.+ .
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~--------------~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF--------------LFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 666667776 78899999999999988876542211 111122333321 111111 1
Q ss_pred cCC---CChhHHhHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 307 YDS---YNSILYCNRA--ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 307 ~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
+.| .+.+.-+.|+ ..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++.+
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 223 2345555554 447789999999999998999999 899999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777777763
|
|
| >cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=44.45 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=41.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHH----HHcCCC-cccEEEEEECCeEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIA----KSEGVR-TVPTFKIYKNGEKL 492 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~----~~~~v~-~~Pt~~~~~~g~~~ 492 (543)
++.|..++|+.|......|++. ++.|..+|++.+++.. +..|.. ++|++ |.||+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 4578889999999999988763 5777788887764433 345766 89977 4577654
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.052 Score=44.34 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
...+......-...++.+++...+...--+.|+.+..-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHH
Q 009096 128 RLGQVE 133 (543)
Q Consensus 128 ~~g~~~ 133 (543)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.24 Score=49.74 Aligned_cols=239 Identities=14% Similarity=0.026 Sum_probs=118.4
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHH-HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS-FEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
++.+| .+..|..+|......-.++-|...|-+.-.-+.-.....+.. ...-..++.+..--|.+++|.+.|-.+-..+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 33445 477888888888777788888887766544222111111111 1223445666666788888887775443321
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
+...++.++|+|-...++++..-.- .+....-.++...|..+..+..+++|.++|.+.-... +..+
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d----~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-~~~e 830 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSD----DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-NQIE 830 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-hHHH
Confidence 1234556667766666665543221 1112222355555777777777777777776552211 0111
Q ss_pred HHHHHHhHHHHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHH
Q 009096 268 IASVLTNVKMVVR-----------ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336 (543)
Q Consensus 268 ~~~~l~~~~~~~~-----------~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 336 (543)
.+..+......+. +-.+|.++...|.-++|++.|-+.- .|.- --.....+++|.+|.+..+
T Consensus 831 cly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHH
Confidence 1111110000000 1234566666666666666654321 1110 0112334455555555443
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 009096 337 VALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372 (543)
Q Consensus 337 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 372 (543)
+-- -|.-.......+.-+...++.-+|++.++++
T Consensus 903 ~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 903 RFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred hcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 311 1222222333444556667777777777776
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0014 Score=38.80 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=14.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 349 LLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
+.++|.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.087 Score=43.06 Aligned_cols=104 Identities=12% Similarity=-0.066 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+......-...++.+++...+...--+.|..+.+-..-|.++...|+|.+|+..++.+..-.|..+.+--.++.|+..+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 45567777888899999999999889999999999999999999999999999999999999999988899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+.+= ..+-+.+++..+ ++.+...+
T Consensus 93 D~~W-r~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 93 DPSW-RRYADEVLESGA-DPDARALV 116 (160)
T ss_pred ChHH-HHHHHHHHhcCC-ChHHHHHH
Confidence 8641 122334555544 55554333
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.2 Score=48.94 Aligned_cols=77 Identities=17% Similarity=0.018 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcC
Q 009096 66 EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCF 141 (543)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 141 (543)
...+.+.......|+++......+..+...|+.+.|+..+...++ +.. .-.++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444445567888888888899999999998888999988887 332 23567788889999999999888876
Q ss_pred CCC
Q 009096 142 PGH 144 (543)
Q Consensus 142 a~~ 144 (543)
..+
T Consensus 329 L~d 331 (546)
T KOG3783|consen 329 LRD 331 (546)
T ss_pred HHh
Confidence 654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.66 Score=48.35 Aligned_cols=280 Identities=11% Similarity=-0.042 Sum_probs=168.3
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc--c-------hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE--N-------AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY- 115 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (543)
.+|......|.......++++|..+..++...-|. . ....-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 46667778888889999999999999988765332 1 3555677888999999999999999999987764
Q ss_pred ----hhHHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCC--HHHHHHHHHHHH--
Q 009096 116 ----NRAHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGD--WKTVLRETDAAI-- 184 (543)
Q Consensus 116 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l-- 184 (543)
..++..+|.+..-.|++++|..+..++.+ ..+.. ...+...+..+.+....|+ +.+....+...-
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~----~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY----HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998877654 11111 1123334455666677773 233333332222
Q ss_pred --HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChh-HHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhc
Q 009096 185 --AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPS-QVKFLVWLLKLMFNISELRFENAVSSAEKAGLL 261 (543)
Q Consensus 185 --~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 261 (543)
...|-. ......++.++...-+++.+.......++........ .......+.++.+.+..|+.++|...+.+....
T Consensus 569 ~l~q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 569 HLEQKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred Hhhhcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222322 2223334444444444777777666666654333211 112222356799999999999999999887654
Q ss_pred CCCc--HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHH
Q 009096 262 DYSN--VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 262 ~p~~--~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
--.. ...+. .+ .+.-........|+.++|.....+...-+-.+ ...+.+....-..+|-..+|....
T Consensus 648 ~~~~~~~~~~~--a~-----~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al 720 (894)
T COG2909 648 LLNGQYHVDYL--AA-----AYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELAL 720 (894)
T ss_pred hcCCCCCchHH--HH-----HHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHH
Confidence 3322 11111 11 11112334466799999988887744321111 122333344444445555554444
Q ss_pred HH
Q 009096 336 NV 337 (543)
Q Consensus 336 ~~ 337 (543)
..
T Consensus 721 ~~ 722 (894)
T COG2909 721 DE 722 (894)
T ss_pred HH
Confidence 43
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=44.49 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAICWSKMGL-----------WENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++..++..|++-+|+++.+..+..++++. ..+..-|.++.++.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678999999999999999999988776 556667888766543 3568999999999999998888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+.+|.-+-...-|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777667777887777777765
|
|
| >PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=44.37 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=65.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHH-h---hCCCeEEEEEeCc-----CcHHHHHHcCC--CcccEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC-V---RYPYVHFFKVDVE-----ESLAIAKSEGV--RTVPTF 483 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~-~---~~~~~~~~~~d~~-----~~~~~~~~~~v--~~~Pt~ 483 (543)
+.-.|++++..-+.++|-|-... |-..-+-.|.+++ + .-+++-++.|-+. +|.+++++|+| ..+|.+
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~ 87 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVI 87 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEE
T ss_pred cceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEE
Confidence 34567888888899999887643 2333444555665 3 3356888888664 57899999999 578999
Q ss_pred EEEEC-CeEEEEE--cCC-CHHHHHHHHHhcCCCC
Q 009096 484 KIYKN-GEKLKEM--INP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 484 ~~~~~-g~~~~~~--~g~-~~~~~~~~~~~~~~~~ 514 (543)
++|.. +++.-++ .|. +.+.|+.|+++....+
T Consensus 88 ~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 88 YLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp EEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred EEecCCCCCCccCCccCCccHHHHHHHHHhCCCee
Confidence 99984 4555555 676 9999999999875543
|
The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0087 Score=54.29 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
++-.++.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999998776555443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.24 Score=46.38 Aligned_cols=187 Identities=12% Similarity=-0.024 Sum_probs=130.5
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHH
Q 009096 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL----HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFN 242 (543)
Q Consensus 167 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (543)
....+++..+...+.++-... .......++.+|..- .+..+|...|+.+.. ...+.....+ |.++
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~l------g~~~ 119 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNL------GLMY 119 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhH------HHHH
Confidence 345677888888888777632 235566667777654 357789999984433 3333333333 6666
Q ss_pred Hh----hcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHhccCCC
Q 009096 243 IS----ELRFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSS-----R--RYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 243 ~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~-----~--~~~~A~~~~~~al~~~p~ 310 (543)
.. ..+..+|..+|+++....-... ... ..+|..+..- - +...|+..|.++....
T Consensus 120 ~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~------------~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 120 ANGRGVPLDLVKALKYYEKAAKLGNVEAALAM------------YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred hcCCCcccCHHHHHHHHHHHHHcCChhHHHHH------------HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 65 4589999999999988754433 111 2245555443 1 3347999999988766
Q ss_pred ChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---------------CHHHHHHHHHH
Q 009096 311 NSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG---------------RWSEAVRDYEA 371 (543)
Q Consensus 311 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~ 371 (543)
++.+.+.+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+.+
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 68889999988866 4589999999999999876 88899999 776666 78888888888
Q ss_pred HHhcCCCChH
Q 009096 372 LRRELPGDNE 381 (543)
Q Consensus 372 al~~~p~~~~ 381 (543)
+....+....
T Consensus 263 ~~~~~~~~~~ 272 (292)
T COG0790 263 ACELGFDNAC 272 (292)
T ss_pred HHHcCChhHH
Confidence 8877665433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.032 Score=43.54 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=67.2
Q ss_pred ChhHHhHHHHHHHHccC---HHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 311 NSILYCNRAICWSKMGL---WENSIEDCNVALR-IQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
.....+++++++.+..+ ..+.+..++..++ -.|+ .-+..+.++..+.++++|+.|+.+.+..++..|+|+++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 36778899999887654 5678889999986 4444 34678899999999999999999999999999999998865
Q ss_pred HHHHHHHHH
Q 009096 386 LHNAQVALK 394 (543)
Q Consensus 386 l~~~~~~l~ 394 (543)
-..+...+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 555544443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.072 Score=51.05 Aligned_cols=172 Identities=15% Similarity=0.014 Sum_probs=107.3
Q ss_pred HhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC
Q 009096 109 VRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 109 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 188 (543)
+..+|-+.+++..++.++..+|+.+.|.+.+++++ -.+++++.-.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL----------------------------------f~~e~~~~~~- 77 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL----------------------------------FAFERAFHPS- 77 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------------------HHHHHHHHHH-
Confidence 56689999999999999999999999988876553 2222222110
Q ss_pred CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC-cHH
Q 009096 189 DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS-NVE 267 (543)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 267 (543)
... ... ..-.-..+++-...+....+.+++.....+.+.|-+..|++..+-.+.++|. |+-
T Consensus 78 -F~~--------~~~---------~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 78 -FSP--------FRS---------NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred -hhh--------hhc---------ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 000 000 0000011222222223333445555577888899999999999999999998 665
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCH--------------
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLW-------------- 328 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~-------------- 328 (543)
...++ +-....+.++|+--++.++....... .-|..-+..+.++...++-
T Consensus 140 g~ll~-----------ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~ 208 (360)
T PF04910_consen 140 GVLLF-----------IDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSEN 208 (360)
T ss_pred hhHHH-----------HHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccc
Confidence 43322 34445677888877777776554211 1245667777788877777
Q ss_pred -HHHHHHHHHHHhhCCC
Q 009096 329 -ENSIEDCNVALRIQPN 344 (543)
Q Consensus 329 -~~A~~~~~~al~~~p~ 344 (543)
+.|...+.+|+...|.
T Consensus 209 ~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 209 SESADEALQKAILRFPW 225 (360)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 7777777777777664
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0038 Score=55.66 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=68.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
-.-...|.-....|+.++|..+|+.|+.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34455666778899999999999999999999999999999999999999999999999999999999998877654
|
|
| >cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0049 Score=52.93 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=30.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHF 460 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~ 460 (543)
..++.++.|+...||+|..+.+.+..+..++++ +.|
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 567889999999999999999999999888764 444
|
It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. |
| >cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=44.97 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=74.6
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC--cHHHHHHcCCC----ccc-E
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE--SLAIAKSEGVR----TVP-T 482 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~--~~~~~~~~~v~----~~P-t 482 (543)
..+++...|...+.....+++.|..+--..-..+ ..+.++++...+ -+++.|||.. ...||.++.|. .-| +
T Consensus 4 e~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 4 EDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred ccccchHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 3567888999999999999998887653322222 367777777766 7899999986 67899999998 555 5
Q ss_pred EEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 483 FKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 483 ~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+.-|+||.-...+-.. +...+..|++.
T Consensus 83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhcccCCCccccccchhhHHHHHHHhhC
Confidence 7888999877766666 78888887763
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=57.31 Aligned_cols=145 Identities=8% Similarity=-0.072 Sum_probs=100.1
Q ss_pred HHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR-RAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 300 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.|.++-...|+++..|...+....+.|-|.+--..|.++++.+|.+.+.|.. .+.=+...++++.+...|.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555678899999999998889999999999999999999999999976 566678889999999999999999999
Q ss_pred ChHHHHHHHHHHHHHH--hhhhhhhhcccCCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchh
Q 009096 379 DNEVAESLHNAQVALK--KSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEIS 445 (543)
Q Consensus 379 ~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~ 445 (543)
+|.+|....+.....- -..+.. ....+.+....-++...-.+-...+-.+..+|..+.|+..+...
T Consensus 175 ~p~iw~eyfr~El~yiTKL~~R~~-Kte~l~nei~~d~d~~~e~~~~q~p~~~~~~~~~sS~~~~~k~d 242 (435)
T COG5191 175 SPRIWIEYFRMELMYITKLINRRE-KTEILSNEIGLDSDDKDEIERGQVPFAVFADCFNSSCFTAKKID 242 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHH-HHhhhhccccccccccchhhcccCcHHHHHHhhCCcchhhhccc
Confidence 9999988776544332 111111 11111111111111122222223345566678888888776544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0074 Score=39.10 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=32.7
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
+.++.+|..+.++|+|++|..+.+.++++.|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888889999999999999999999999988776554444
|
|
| >cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0055 Score=43.46 Aligned_cols=57 Identities=12% Similarity=0.343 Sum_probs=43.2
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+||+.|+.....|++ .++.|..+|++..++ +.+..+-..+|++ |.||+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-----~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-----KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 567888999999999999887 357778888887654 5555577888988 45776544
|
GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.45 Score=45.72 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHH---HHHc----cC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAIC---WSKM----GL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~~~----g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.|+.++|+..+-..-.+.|+-.......-.+ +-.. |. .-+-+.+.++.+-.+.++.-++..-+.-.+.+.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 4778889888887777888765544332222 2111 11 123345556666677788877777777788889
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+|.+|++++++.-+.+.....+-..+..+...+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 999999999999887654444444444444444
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.063 Score=52.74 Aligned_cols=131 Identities=21% Similarity=0.019 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
.-++..+...+.++|.++...... + +...+...+....+.-....++..+|++..+..+|+.+....|..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~---------~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~ 117 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAA---------F-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ 117 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHH---------H-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH
Confidence 335555555566677776654221 1 344555666777777777777777777777777777777776666
Q ss_pred HHHHHHHHH-HHhhCCCCHHHHHHH------HHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 329 ENSIEDCNV-ALRIQPNYTKALLRR------AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 329 ~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
..+...+.. +....|++......+ +.....+|+..++....+++..+.|.++.+...+..+
T Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 118 FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 555555444 667777776554444 7777777777777777777777777777665555444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=37.73 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
++.++|.+|..+|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775433
|
|
| >cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0067 Score=47.03 Aligned_cols=91 Identities=13% Similarity=0.052 Sum_probs=66.7
Q ss_pred hhccCCCCceeeeeeCCCCccccchhHhHHHHHhh---CCC-eEEEEEeCcCcHHHHHHcCCCc--ccEEEEEECCe-EE
Q 009096 420 KAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVR---YPY-VHFFKVDVEESLAIAKSEGVRT--VPTFKIYKNGE-KL 492 (543)
Q Consensus 420 ~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~---~~~-~~~~~~d~~~~~~~~~~~~v~~--~Pt~~~~~~g~-~~ 492 (543)
......+.+..+.|+ .-..-..+.+.+.+++++ +.+ +.|+.+|.+......+.||+.. +|++.+..... ..
T Consensus 10 ~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~K 87 (111)
T cd03072 10 EELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYL 87 (111)
T ss_pred HHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCc
Confidence 344445555555555 222335678889999999 876 9999999999888999999997 89999886422 22
Q ss_pred EE-EcCC-CHHHHHHHHHhcCC
Q 009096 493 KE-MINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~-~~g~-~~~~~~~~~~~~~~ 512 (543)
.. ..+. +++.|.+|++.+.+
T Consensus 88 y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 88 FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCCCccccCHHHHHHHHHHHhc
Confidence 32 4455 99999999998765
|
It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.13 Score=47.76 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=96.2
Q ss_pred HhhcChHHHHHHHHHHhhcC-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcc----CC---CC--
Q 009096 243 ISELRFENAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSR-RYSEACSAYGEGLKY----DS---YN-- 311 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p---~~-- 311 (543)
...|+++.|..++.|+-... .-++..... ....+++.|......+ ++++|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~-----La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE-----LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH-----HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 46789999999999986544 333333222 2334678999999999 999999999999877 21 11
Q ss_pred -----hhHHhHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 312 -----SILYCNRAICWSKMGLWE---NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 312 -----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.++.+.++.+++.+.+.+.+..-+
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 356777899999888765 455555566666788888886666666668999999999999988766
|
It is also involved in sporulation []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.013 Score=43.26 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhCCHH
Q 009096 67 ALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--NRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 133 (543)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567788888999999999999999999999999999999999888765 556666666666666533
|
|
| >PRK10954 periplasmic protein disulfide isomerase I; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0089 Score=52.57 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEe
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVD 464 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d 464 (543)
+++.++.|+.-.||+|..+.|.+ ..+.+.+++ +.|.++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 35679999999999999999876 788888864 5555443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.087 Score=50.50 Aligned_cols=179 Identities=12% Similarity=-0.078 Sum_probs=111.7
Q ss_pred HHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhH
Q 009096 74 AISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
.++.+|-+.+++..++.++..+|+...|.+.+++|+-.-.......+..-..-...|. ...+......
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~------------~rL~~~~~eN 99 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN------------CRLDYRRPEN 99 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc------------cccCCccccc
Confidence 3566899999999999999999999999999999874321111100100000000000 0111111122
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC-ChhHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD-SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS-PPSQVK 231 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 231 (543)
..-..+.+.......+.|-+..|++..+-.+.++|. ++-.+.+.+-....+.++++--+..++........+ ....-
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP- 178 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP- 178 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-
Confidence 233455677778888999999999999999999999 444445555556667788877777777654421111 00000
Q ss_pred HHHHHHHHHHHHhhcCh---------------HHHHHHHHHHhhcCCCcH
Q 009096 232 FLVWLLKLMFNISELRF---------------ENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 266 (543)
...+..+.+++..++. ++|...+.+|+...|.-.
T Consensus 179 -n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 -NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred -cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1122336677777777 889999999998887643
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=43.99 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=74.1
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCChhHH
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGR-----------LTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+|..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999887765 566677888876542 3468999999999999998888
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+.+|.-+-....|+++..--++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888887777777777777666654
|
|
| >cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=43.94 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=66.6
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC-e
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG-E 490 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g-~ 490 (543)
+.+.+.....+....+++|-|+.++|+ .....+.+++..+. ++.|+.+. +..++..+++. .|++++|+.+ .
T Consensus 4 i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 4 LTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred cCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCC-CCceEEeCCccc
Confidence 445566666777888899999998877 45677888888885 58887666 46788888875 5899999764 3
Q ss_pred EEEEEcCC-CHHHHHHHHHh
Q 009096 491 KLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~ 509 (543)
....+.|. +.+.|.+||..
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHHHHHHHh
Confidence 33446676 88999999874
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai |
| >PRK10638 glutaredoxin 3; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0079 Score=43.93 Aligned_cols=57 Identities=19% Similarity=0.393 Sum_probs=41.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+||+.|+.....|++. ++.+..+|++..++ +.+..|...+|++ +.+|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 4567889999999999988874 56667778876543 4455688899987 44786554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.022 Score=42.08 Aligned_cols=62 Identities=21% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHH
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD--NEVAESLHNAQVAL 393 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l 393 (543)
+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+|+. ..++..+..+...+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 344555555555555555555555555555555555555555555443 44444444444444
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.86 Score=44.75 Aligned_cols=262 Identities=15% Similarity=-0.012 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
+...+.+.......|.++......+..+...|+.+.|+..+...+. ..+.... ...++.++..+.-..+|..|..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~----~~~kQ~~-~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP----IRMKQVK-SLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666677899988889999999999998888998888775 2222222 2346678888888889999999
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHHcc--------ChhHHHHHhhc---CCCCCCCCChhHHHHHHHHHHHHHHHhhc
Q 009096 179 ETDAAIAIGVDSSPQLVA-CKAEAHLKLH--------QNEDADSCLSN---MPKFEHYSPPSQVKFLVWLLKLMFNISEL 246 (543)
Q Consensus 179 ~~~~~l~~~p~~~~~~~~-~~a~~~~~~~--------~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 246 (543)
.+......+.-. ...|. ..|-|++..+ +-+.|...++. .+...|.+.+.... +-.+.+
T Consensus 325 ~~~~L~desdWS-~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKve 394 (546)
T KOG3783|consen 325 SFDLLRDESDWS-HAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVE 394 (546)
T ss_pred HHHHHHhhhhhh-HHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHH
Confidence 888888774322 22222 2334443222 22322222221 12222222111110 011111
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH--HhcCCHHHHH---HHHHHHhcc-CCCCh-hHHhHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL--FSSRRYSEAC---SAYGEGLKY-DSYNS-ILYCNRA 319 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~--~~~~~~~~A~---~~~~~al~~-~p~~~-~~~~~la 319 (543)
+|.. +. ..++....+. .+.++...+ +......+.. ..++. -+. ++++. --+..+|
T Consensus 395 rf~~------~~-~~~~~~~la~----------P~~El~Y~Wngf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g 456 (546)
T KOG3783|consen 395 RFVK------RG-PLNASILLAS----------PYYELAYFWNGFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKG 456 (546)
T ss_pred HHhc------cc-cccccccccc----------hHHHHHHHHhhcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHH
Confidence 1111 00 0111111000 001111111 1111222222 11211 112 33332 3456689
Q ss_pred HHHHHccCHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVALRI---QPN----YTKALLRRAVSNEKLGR-WSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.++..+|+...|..+|+.+++. ... .|-++|.+|..+..+|. ..++..++.+|.+...++.--...-.+++.
T Consensus 457 ~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqA 536 (546)
T KOG3783|consen 457 VILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQA 536 (546)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 9999999999999999988843 111 36889999999999999 999999999999988665443333334444
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
.+
T Consensus 537 Al 538 (546)
T KOG3783|consen 537 AL 538 (546)
T ss_pred HH
Confidence 44
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0044 Score=35.31 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+++.+|.++..+|++++|...|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 543 | ||||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 1e-13 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 1e-13 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 2e-12 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 2e-12 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 1e-10 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 1e-10 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 2e-10 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 3e-10 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 1e-08 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 4e-10 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 7e-10 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 9e-10 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 8e-09 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 3e-06 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 1e-08 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 2e-06 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 2e-08 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 2e-08 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 2e-05 | ||
| 3m9j_A | 105 | Crystal Structure Of Human Thioredoxin C6973S DOUBL | 4e-08 | ||
| 1trs_A | 105 | The High-Resolution Three-Dimensional Solution Stru | 5e-08 | ||
| 2ifq_A | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 6e-08 | ||
| 2hsh_A | 105 | Crystal Structure Of C73s Mutant Of Human Thioredox | 8e-08 | ||
| 1m7t_A | 107 | Solution Structure And Dynamics Of The Human-Escher | 1e-07 | ||
| 2ifq_B | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 2e-07 | ||
| 3kd0_A | 105 | Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin | 2e-07 | ||
| 3trx_A | 105 | High-Resolution Three-Dimensional Structure Of Redu | 2e-07 | ||
| 2j23_A | 121 | Cross-Reactivity And Crystal Structure Of Malassezi | 2e-07 | ||
| 1syr_A | 112 | Initial Structural Analysis Of Plasmodium Falciparu | 3e-07 | ||
| 1aiu_A | 105 | Human Thioredoxin (D60n Mutant, Reduced Form) Lengt | 3e-07 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 3e-07 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-07 | ||
| 3qfa_C | 116 | Crystal Structure Of The Human Thioredoxin Reductas | 3e-07 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 4e-07 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 5e-07 | ||
| 2i9h_A | 103 | Nmr Solution Structure Of The Reduced Form Of Thior | 7e-07 | ||
| 3f3q_A | 109 | Crystal Structure Of The Oxidised Form Of Thioredox | 7e-07 | ||
| 1mdi_A | 105 | High Resolution Solution Nmr Structure Of Mixed Dis | 7e-07 | ||
| 1erw_A | 105 | Human Thioredoxin Double Mutant With Cys 32 Replace | 7e-07 | ||
| 2l6j_A | 111 | Tah1 Complexed By Meevd Length = 111 | 8e-07 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 8e-07 | ||
| 3ieg_A | 359 | Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L | 1e-06 | ||
| 3esk_A | 129 | Structure Of Hop Tpr2a Domain In Complex With The N | 2e-06 | ||
| 1elr_A | 131 | Crystal Structure Of The Tpr2a Domain Of Hop In Com | 2e-06 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 3e-06 | ||
| 3e3e_A | 105 | Human Thioredoxin Double Mutant C35s,C73r Length = | 3e-06 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-06 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 4e-06 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 5e-06 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-04 | ||
| 3f3r_A | 109 | Crystal Structure Of Yeast Thioredoxin1-Glutathione | 1e-05 | ||
| 2oe0_A | 114 | Crystal Structure Of Mitochondrial Thioredoxin 3 Fr | 1e-05 | ||
| 1ti3_A | 113 | Solution Structure Of The Thioredoxin H1 From Popla | 2e-05 | ||
| 3fwv_A | 128 | Crystal Structure Of A Redesigned Tpr Protein, T-Mo | 2e-05 | ||
| 2if4_A | 338 | Crystal Structure Of A Multi-Domain Immunophilin Fr | 3e-05 | ||
| 2hxk_A | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 4e-05 | ||
| 1xfl_A | 124 | Solution Structure Of Thioredoxin H1 From Arabidops | 6e-05 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-05 | ||
| 3hhv_A | 110 | The Crystal Structure Of The Thioredoxin A2 From Su | 9e-05 | ||
| 2e0q_A | 104 | Crystal Structure Of K53e Thioredoxin From Sulfolob | 9e-05 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-04 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-04 | ||
| 4gcn_A | 127 | N-Terminal Domain Of Stress-Induced Protein-1 (Sti- | 2e-04 | ||
| 3d21_A | 139 | Crystal Structure Of A Poplar Wild-Type Thioredoxin | 4e-04 | ||
| 2xbi_A | 108 | Crystal Structure Of Schistosoma Mansoni Thioredoxi | 4e-04 | ||
| 2xbq_A | 117 | Crystal Structure Of Reduced Schistosoma Mansoni Th | 4e-04 | ||
| 2fa4_A | 111 | Crystal Structure Of Oxidized Form From Saccharomyc | 5e-04 | ||
| 2hsy_A | 104 | Solution Structure Of Thioredoxin 2 From Saccharomy | 5e-04 | ||
| 3zzx_A | 105 | Crystallographic Structure Of Thioredoxin From Lito | 5e-04 |
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105 | Back alignment and structure |
|
| >pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105 | Back alignment and structure |
|
| >pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107 | Back alignment and structure |
|
| >pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105 | Back alignment and structure |
|
| >pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105 | Back alignment and structure |
|
| >pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121 | Back alignment and structure |
|
| >pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112 | Back alignment and structure |
|
| >pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103 | Back alignment and structure |
|
| >pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109 | Back alignment and structure |
|
| >pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105 | Back alignment and structure |
|
| >pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105 | Back alignment and structure |
|
| >pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359 | Back alignment and structure |
|
| >pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129 | Back alignment and structure |
|
| >pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109 | Back alignment and structure |
|
| >pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114 | Back alignment and structure |
|
| >pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113 | Back alignment and structure |
|
| >pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128 | Back alignment and structure |
|
| >pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338 | Back alignment and structure |
|
| >pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110 | Back alignment and structure |
|
| >pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127 | Back alignment and structure |
|
| >pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139 | Back alignment and structure |
|
| >pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108 | Back alignment and structure |
|
| >pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117 | Back alignment and structure |
|
| >pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111 | Back alignment and structure |
|
| >pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104 | Back alignment and structure |
|
| >pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 2e-93
Identities = 75/368 (20%), Positives = 141/368 (38%), Gaps = 29/368 (7%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E+ G ++ G +AL + A+ P+N RA A+G+ A+ D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL--------CFPGHHPDPNELLKLQSFE 158
+ + L + A + L + G+++ A ++L+K +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218
+ ++ ++ D+ + D + + V +L +AE +K + A S L
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAA 180
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISEL-----RFENAVSSAEKAGLLDYSNVEIASVLT 273
K + + + + IS L E ++S + LD + +
Sbjct: 181 SKLKSDNT-----------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD----SYNSILYCNRAICWSKMGLWE 329
VK + + L RY++A S Y +K + Y C+SK
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289
Query: 330 NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389
+I C+ L+++P+ AL RA + + EA++DYEA + D ++ E L A
Sbjct: 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
Query: 390 QVALKKSR 397
Q LK+S+
Sbjct: 350 QRLLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 1e-20
Identities = 26/175 (14%), Positives = 65/175 (37%), Gaps = 8/175 (4%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
A + + ++ + + ++ A+ DK + + +A R RA G +A+SD
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL-----CFPGHHPDPNELLKLQSFEK 159
+ A +L A ++++LY++LG E + + H +++ K
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236
Query: 160 HLNRCAESRKIGDWKTVLRETDAAIAI---GVDSSPQLVACKAEAHLKLHQNEDA 211
+ E + G + + ++ + + + + K + +A
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 1e-89
Identities = 73/365 (20%), Positives = 140/365 (38%), Gaps = 19/365 (5%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
D E+ G ++ G +AL + A+ P+N RA A+G+ A+ D
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL--------CFPGHHPDPNELLKLQSFE 158
+ ++L + A + L + G+++ A ++L+K +
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144
Query: 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218
+ ++ + GD+ + D + + V +L +AE +K + A S L
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAA 203
Query: 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278
K + + + L + + E ++S + LD + + VK +
Sbjct: 204 SKLK----NDNTEAFYKISTLYYQLG--DHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDS----YNSILYCNRAICWSKMGLWENSIED 334
+ L RY++A S Y +K + Y C+SK +I
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
C+ L+++P+ AL RA + + EA++DYE + D ++ E L AQ LK
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
Query: 395 KSRGE 399
+S+
Sbjct: 378 QSQKR 382
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 44/341 (12%), Positives = 106/341 (31%), Gaps = 55/341 (16%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
+ + + ++ + G++ A+ DK + + +A R RA G +A+SD
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL-----CFPGHHPDPNELLKLQSFEK 159
+ A +L A ++++LY++LG E + + H +++ K
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP---QLVACKAEAHLKLHQNEDA----D 212
+ E + G + + ++ + + + K + +A
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272
L P + + + E ++ A+ E A + ++ +I
Sbjct: 320 EVLQMEPDNVN----------ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI---- 365
Query: 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-SYNSILYCNRAICWSKMGLWENS 331
++ + G+K + I+ R
Sbjct: 366 --------REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR------------- 404
Query: 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
+AL+ P+ + + + +K + A E L
Sbjct: 405 ----KLALQWHPDNFQNEEEKKKAEKKFIDIAAA---KEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 42/161 (26%)
Query: 315 YCNRAICWSKMGLWENSIED-----------------------CNVALRIQPNYTKALLR 351
+ + + L+ S+ D + A+ P+ A R
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65
Query: 352 RAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEV 410
RA +G+ A+ D ++ + + L K G++
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLK-----------QGKL 110
Query: 411 EEISSLEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNL 450
+E + + FK + S P + ++ K +E+ +
Sbjct: 111 DE--AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 2e-43
Identities = 73/386 (18%), Positives = 131/386 (33%), Gaps = 36/386 (9%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A +K GN+ +R + +A+K Y+ A+ + + Y SN +A ++G L + V +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGDLKKVVEMSTK 64
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ L P Y++ R AS LG+ +A L + D N+ S E L R
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND----ASIEPMLERNLNK 120
Query: 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS---NMPKFEHY 224
+ + K + D A A + S Q + + L S F +Y
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180
Query: 225 SPPSQV-KFLVWLLKLMFNISELRFENAVSSAEKA-----GLLDYSNVEIASVLTNVKMV 278
++ K L+ L ++ S ++ A S KA LD +N + K+
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK---LKEKLA 237
Query: 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
+ G F A + ++ Y A+ + + A
Sbjct: 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKA 296
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSR 397
L++ N + R N L + +A +D++ A D E +
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYIQLACLAYR-- 350
Query: 398 GEFVNNMKMSGEVEEISSLEKFKAAI 423
+ ++ F A
Sbjct: 351 ---------ENKFDD--CETLFSEAK 365
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-27
Identities = 39/340 (11%), Positives = 92/340 (27%), Gaps = 82/340 (24%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
A ++ G + K + + A + KAI + P +Y A + TE + +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMALIMADRNDSTEYYNYFD 294
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEK------- 159
+A++LD + + + F L + A + F+K
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQA------------------GKDFDKAKELDPE 336
Query: 160 ----HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDAD 212
++ + + + A P+ AE + + A
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRK----FPEAPEVPNFFAEILTDKNDFDKAL 392
Query: 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272
++ A+ L+ +
Sbjct: 393 KQ---------------------------------YDLAIE-------LENKL---DGIY 409
Query: 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI 332
+ +V T + + EA + + K D + A + + +I
Sbjct: 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469
Query: 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
+ + + L +A++ + + + +R L
Sbjct: 470 TLFEESADLARTMEEKL--QAITFAEAAKVQQRIRSDPVL 507
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-21
Identities = 40/361 (11%), Positives = 101/361 (27%), Gaps = 85/361 (23%)
Query: 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAI-------SMSPENA 82
+N + +N K + + + +F +A +L+++ + + + A
Sbjct: 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237
Query: 83 AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142
+ A D ++A+ L P N ++ +A +
Sbjct: 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEY------- 289
Query: 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202
F+K A+ + + + + + + +
Sbjct: 290 -----------YNYFDK-----------------------ALKLDSN-NSSVYYHRGQMN 314
Query: 203 LKLHQNEDA----DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA 258
L + A D P+ + + L L + + +F++ + +A
Sbjct: 315 FILQNYDQAGKDFDKAKELDPEN--------IFPYIQLACLAYREN--KFDDCETLFSEA 364
Query: 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318
E+ + L + +A Y ++ ++ +Y
Sbjct: 365 KRKFPEAPEVPN------------FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Query: 319 AICWSKMGL---------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369
A K L + + A ++ P +A + A + EA+ +
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Query: 370 E 370
E
Sbjct: 473 E 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 5e-20
Identities = 49/400 (12%), Positives = 114/400 (28%), Gaps = 71/400 (17%)
Query: 55 GNEMYRKGNFVEALKLYDK-AISMSPENAAYRS--NRAATLTALGRLTEAVSDCEEAVRL 111
+ G F +A+ +++ +A+ R A+ +L E D + A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 112 DPGYNRAHQRLASL-------------YFRLGQVENARHHLCFPGHHPDPNELLKLQSFE 158
+ + +F + + E + + D + L +
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY-DESNEADKELMNGLSNLY 198
Query: 159 KHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH-------LKLHQNEDA 211
K + + + + R + + + +L A + + A
Sbjct: 199 KR-SPESYDKADESFTKAARLFEEQLDKN-NEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256
Query: 212 ----DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNV 266
+ P+ Y + + + + +KA LD +N
Sbjct: 257 HEDIKKAIELFPRVNSYIYMALIMA------------DRNDSTEYYNYFDKALKLDSNN- 303
Query: 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG 326
+SV + RG F + Y +A + + + D N Y A +
Sbjct: 304 --SSVYYH---------RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Query: 327 LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAES 385
+++ + A R P + A + +A++ Y A+ +N++
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENKLDGI 408
Query: 386 LHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISS 425
+ K + + ++E F A +
Sbjct: 409 YVGIAPLVGK-----------ATLLTRNPTVENFIEATNL 437
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 8e-18
Identities = 33/318 (10%), Positives = 87/318 (27%), Gaps = 52/318 (16%)
Query: 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138
+ A ++ + +A+ A+ L + L++ Y +G ++
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKV--- 58
Query: 139 LCFPGHHPDPNELLKLQSFEK-----------HLNRCAESRKIGDWKTVLRETDA----- 182
++ K L R + + +G + DA
Sbjct: 59 ---------------VEMSTKALELKPDYSKVLLRRASANEGLGKFA------DAMFDLS 97
Query: 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP----------PSQVKF 232
+++ D + + E +L ++ + +
Sbjct: 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157
Query: 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
L + + + E ++ +++ D + S L + + ++R
Sbjct: 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ E E K +I + I + ED A+ + P + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276
Query: 353 AVSNEKLGRWSEAVRDYE 370
A+ +E ++
Sbjct: 277 ALIMADRNDSTEYYNYFD 294
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-40
Identities = 60/379 (15%), Positives = 114/379 (30%), Gaps = 33/379 (8%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A ++K GN + NF EA+K Y AI + P + SN +A + G L + + +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ + P +++A R AS LG +A L + D + E++LN+ A
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 144
Query: 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK-LHQNEDADSCLSNMPKFEHYSP 226
+ + + + + ++ + + D+ + +
Sbjct: 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA-LQRL 203
Query: 227 PSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286
S + + S + + +S+ L + L G
Sbjct: 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL---ALCY---------TGI 251
Query: 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346
F +A E + Y A+ + + + A+ + P Y
Sbjct: 252 FHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP 310
Query: 347 KALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405
R L + A D++ A + E L K
Sbjct: 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYK---------- 356
Query: 406 MSGEVEEISSLEKFKAAIS 424
G+ E S F
Sbjct: 357 -QGKFTE--SEAFFNETKL 372
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 5e-28
Identities = 42/333 (12%), Positives = 96/333 (28%), Gaps = 77/333 (23%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + K N ++A L ++I++ P +Y A TL E ++AV L+P
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEK-----------HLNR 163
Y + +YF L +NA + F+K ++
Sbjct: 309 YPPTYYHRGQMYFILQDYKNA------------------KEDFQKAQSLNPENVYPYIQL 350
Query: 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223
K G + + +
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLK---------------------FPTLPEVPTFF----- 384
Query: 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI----ASVLTNVKMVV 279
+++ L F+ A+ + A L+ +I ++ ++
Sbjct: 385 ----AEI-----LTDRG------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
R ++ +++ A + + D + A +M + +IE +
Sbjct: 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
+ + L +A + + + + +R +
Sbjct: 490 ILARTMDEKL--QATTFAEAAKIQKRLRADPII 520
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 58/400 (14%), Positives = 114/400 (28%), Gaps = 44/400 (11%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G+ + ++ KA+ + P+++ RA+ +LG T+A+ D + L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
++ A L L + + +++L + +S
Sbjct: 125 FDGASIE-PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183
Query: 175 TVLRETDAAI-----AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229
D A A+ S L + S LS +
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN-- 241
Query: 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-----YSNVEIASVLTNVKMVVRART- 283
L +F+ + +A +++ L Y +A L + +
Sbjct: 242 -AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF--LALTLADKENSQEFFKF 298
Query: 284 -----------------RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG 326
RG F + Y A + + + N Y A K G
Sbjct: 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358
Query: 327 LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAES 385
+ S N P + A G + A++ Y+ A R + +
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL----EEVQEKI 414
Query: 386 LHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISS 425
+ K+ + + +++ EKF AAI
Sbjct: 415 HVGIGPLIGKATILARQSSQDPTQLD----EEKFNAAIKL 450
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 43/326 (13%), Positives = 97/326 (29%), Gaps = 43/326 (13%)
Query: 62 GNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117
G+ + + +SP A NR EA+ + A+ LDP
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS--FEKHLNRCAESRKIGDWKT 175
+ +++ Y G +E + L+++ + L R + + +G++
Sbjct: 61 FYSNISACYISTGDLEKVIEFT---------TKALEIKPDHSKALLRRASANESLGNFT- 110
Query: 176 VLRETDA-----AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQV 230
DA +++ D + E +L + + LS PS
Sbjct: 111 -----DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165
Query: 231 KFLVWL------LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284
+ L++ + ++ A + A YS + ++ N
Sbjct: 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN---------- 215
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
S+ Y SA ++ C I ++ ++ + P
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYE 370
+ + A++ E + ++
Sbjct: 276 P-NSYIFLALTLADKENSQEFFKFFQ 300
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 4e-22
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Query: 247 RFENAVSSAEKAGLLD-YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGL 305
N + L A L N RGN+ F+++ ++EA Y +
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKN---------RGNHFFTAKNFNEAIKYYQYAI 52
Query: 306 KYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365
+ D + Y N + C+ G E IE AL I+P+++KALLRRA +NE LG +++A
Sbjct: 53 ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112
Query: 366 VRDYEALRRELPGDNEVAESLHN---AQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAA 422
+ D L D E + + A+K + +V + S +
Sbjct: 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV--LPSNTSLASF 170
Query: 423 ISS 425
Sbjct: 171 FGI 173
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 2/100 (2%)
Query: 36 NNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTAL 95
A + F A+KL KA + P + + A +
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475
Query: 96 GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
++ EA+ E++ L + Q + +++
Sbjct: 476 EKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKR 513
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-36
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 264 SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323
SN +A + N ++ + +GN F Y A Y E +K D N+ILY NRA C +
Sbjct: 1 SNARLAYI--NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT 58
Query: 324 KMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383
K+ ++ +++DC+ +R+ + K +R+A + WS+A R YE + P + E
Sbjct: 59 KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
Query: 384 ESLHNAQ 390
E + N
Sbjct: 119 EGVRNCL 125
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-26
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E K GNE ++KG++ A++ Y++A+ PENA SNRAA LT L A+ DC+
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
+RLD + + + R A+ + + A
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKA 100
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-34
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED 334
++ V + +GN S +A Y E +K D +N +LY NR+ ++K G ++ + ED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 335 CNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+ ++P++ K R+A + E L R+ EA R YE + + ++ E L N +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
E+K GN+ GN +AL+ Y +AI + P N SNR+A G +A D +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENAR 136
V L P + + + R A+ L + E A+
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAK 92
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 6e-34
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310
S + + E V + R GN LF Y A +AY + L D+
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60
Query: 311 ---NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367
++L+ NRA C K+ ++ + + + A+ KAL RR+ + EKLGR +AV
Sbjct: 61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120
Query: 368 DYEALRRELPGDNEVAESLHNAQ 390
D + P + E+L N
Sbjct: 121 DLQRCVSLEPKNKVFQEALRNIS 143
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 2e-23
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYRSNRAATLTALGRLTEAVSD 104
E++++ GNE+++ G++ AL Y +A+ + + A NRAA L +A ++
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETE 87
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
+A+ D G +A R + +LG+++ A
Sbjct: 88 ASKAIEKDGGDVKALYRRSQALEKLGRLDQA 118
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 9e-33
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + A YG+ ++ + N++ +CNRA +SK+G + +++DC A+ I P
Sbjct: 18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKS 396
Y+KA R ++ L + EAV Y+ AL + P + +L A++ L+++
Sbjct: 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 36/89 (40%), Positives = 50/89 (56%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+AE +K GNE + NF A+ Y KAI ++P NA Y NRAA + LG AV DCE
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ +DP Y++A+ R+ L + A
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEA 99
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 59 YRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117
+ GN+ A++ ++AI + P + AY L++L + EAV+ ++A+ LDP
Sbjct: 57 SKLGNYAGAVQDCERAICIDPAYSKAY-GRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
Query: 118 AHQRLASLYFRLGQ 131
L +L +
Sbjct: 116 YKSNLKIAELKLRE 129
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-32
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
+T+ N+ F ++ Y A Y + ++ + N+I Y NR++ + + + ++ D A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399
+ Y K RRA SN LG++ A+RDYE + + P D + +K+ E
Sbjct: 75 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 9e-26
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A+ D
Sbjct: 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ LD Y + + R A+ LG+ A
Sbjct: 72 RAIELDKKYIKGYYRRAASNMALGKFRAA 100
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-32
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
AR G F+ + A AY E +K ++ Y NRA +K+ + +I DCN A+
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399
PN+ +A +R+A + + ++ A+ +A R + N + + Q+ K S+
Sbjct: 66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125
Query: 400 F 400
F
Sbjct: 126 F 126
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
++ AEE + G E + K ++ A+K Y + I +PE+A SNRAA L L EA++D
Sbjct: 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 60
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
C +A+ DP + RA+ R A+ + + +A
Sbjct: 61 CNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-32
Identities = 28/121 (23%), Positives = 60/121 (49%)
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333
N + + + +GN F Y +A Y E +K + ++ LY NRA C++K+ ++ +++
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393
DC ++++P + K R+A + E + +++A+ Y+ E A+ +A
Sbjct: 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
Query: 394 K 394
Sbjct: 132 Y 132
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-26
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A VK GNE ++KG++ +A+K Y +AI +P++A SNRAA T L A+ DCEE
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
++L+P + + + R A+ + A
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKA 103
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 3e-32
Identities = 65/354 (18%), Positives = 110/354 (31%), Gaps = 55/354 (15%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ ++ + AI +P A SN G+L EA+ A+RL P
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS--FEKHLNRCAESRKIGD 172
+ + LA+ G +E A L+ + + + +G
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAY---------VSALQYNPDLYCVRSDLGNLLKALGR 150
Query: 173 WKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDADSC----LSNMPKFE--H 223
+ AI P + A ++ P F +
Sbjct: 151 LEEAKACYLKAIET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 224 YSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
+ L +LK E F+ AV++ +A L ++ V N
Sbjct: 207 IN-------LGNVLK------EARIFDRAVAAYLRALSLSPNHAV---VHGN-------- 242
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
+ A Y ++ + YCN A + G + + N ALR+
Sbjct: 243 -LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
P + +L A + G EAVR Y AL E+ E A + N L++
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKAL--EV--FPEFAAAHSNLASVLQQ 351
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 69/354 (19%), Positives = 133/354 (37%), Gaps = 55/354 (15%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ Y+ G+F A + + P+N ++ RL + A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--SFEKHLNRCAESRKIGD 172
A+ L ++Y GQ++ A H L+L+ + ++N A GD
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHY---------RHALRLKPDFIDGYINLAAALVAAGD 116
Query: 173 WKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDADSC----LSNMPKFE--H 223
+ ++ +A+ +P L L + E+A +C + P F
Sbjct: 117 MEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 224 YSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
+ L + A+ EKA LD + ++ N
Sbjct: 173 SN-------LGCVFN------AQGEIWLAIHHFEKAVTLDPNFLD---AYIN-------- 208
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
GN L +R + A +AY L +++++ N A + + GL + +I+ A+ +Q
Sbjct: 209 -LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
P++ A A + ++ G +EA Y AL L + A+SL+N ++
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTAL--RLCPTH--ADSLNNLANIKRE 317
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 55/318 (17%), Positives = 105/318 (33%), Gaps = 50/318 (15%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ G+ A++ Y A+ +P+ RS+ L ALGRL EA + +A+ P
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--SFEKHLNRCAESRKIGD 172
+ A L ++ G++ A HH + + L + ++N ++
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHF---------EKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 173 WKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDA----DSCLSNMPKFE--H 223
+ + A+++ SP A + + + A + P F +
Sbjct: 219 FDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 224 YSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
+ L LK E A A L ++ A L N
Sbjct: 275 CN-------LANALK------EKGSVAEAEDCYNTALRLCPTH---ADSLNN-------- 310
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
N EA Y + L+ + + N A + G + ++ A+RI
Sbjct: 311 -LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 343 PNYTKALLRRAVSNEKLG 360
P + A + +++
Sbjct: 370 PTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 6e-20
Identities = 44/317 (13%), Positives = 90/317 (28%), Gaps = 79/317 (24%)
Query: 87 NRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP 146
A G A C + R +P L+S++F+ +++ + H
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS------- 56
Query: 147 DPNELLKL--QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204
+K E + N ++ G + + A+ + P + ++
Sbjct: 57 --TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDF----IDGYIN 106
Query: 205 L-----HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAG 259
L E AV + A
Sbjct: 107 LAAALVAAG--------------------------------------DMEGAVQAYVSAL 128
Query: 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRA 319
+ V ++ GN L + R EA + Y + ++ ++ + N
Sbjct: 129 QYNPDLYC---VRSD---------LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPG 378
++ G +I A+ + PN+ A + ++ + AV Y AL L
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL--SLSP 234
Query: 379 DNEVAESLHNAQVALKK 395
++ A N +
Sbjct: 235 NH--AVVHGNLACVYYE 249
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374
A + G +E + C R +P+ T LL + + + R + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 375 ELPGDNEVAESLHNAQVALKK 395
+ P AE+ N K+
Sbjct: 62 QNPLL---AEAYSNLGNVYKE 79
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-30
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
+ +GN LF R+Y EA + YG + + ++ Y NRA+C+ KM E ++ DC AL
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
+ KA ++ + EA+ + + + AL+ ++
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIAK 126
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E+K GN ++ + EA Y +AI+ +P A Y +NRA + + +A++DC
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
A+ LD +AH L + + A +L
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-29
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
E+ K GN ++++G + EA+ YD+ I+ P+N SN+A L LG T+A+ C+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+ +R R L +RL + A +
Sbjct: 63 QGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSV 94
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-28
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
+ + +GN+LF Y EA Y + + N + Y N+A+ K+G + +I+ C L
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385
R +R + +L AV + E+ E +
Sbjct: 66 RYTSTAEHVAIRSKLQ-YRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 7e-29
Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 3/203 (1%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
+ +GN LF R+Y EA + YG + + ++ Y NRA+C+ KM E ++ DC AL
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL-KKSRG 398
+ KA ++ + EA+ + + + + + KK R
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125
Query: 399 EFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYV 458
+ ++ E E S L + AA L + ++ C+ +
Sbjct: 126 NSIEERRIHQESELHSYLTRLIAA--ERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 459 HFFKVDVEESLAIAKSEGVRTVP 481
+ E + + R +P
Sbjct: 184 KYMADMDELFSQVDEKRKKRDIP 206
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 2e-25
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E+K GN ++ + EA Y +AI+ +P A Y +NRA + + +A++DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ LD +AH L + + A +L + + L R A+
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR-AYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 168 RK 169
++
Sbjct: 123 KR 124
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
++ GN + + YS+A Y + L N I NRA +S G E + ED +A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
P Y+KA R ++ + + A YE + E G+ + +K
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI--EAEGNGGSDAMKRGLETTKRK 127
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 30/89 (33%), Positives = 51/89 (57%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+++++K GN + + +A+ LY +A+S++P N Y SNRAA +A G+ +A D E
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENA 135
A +DP Y++A RL F + + A
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGA 98
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-27
Identities = 37/356 (10%), Positives = 77/356 (21%), Gaps = 70/356 (19%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ G L + +A ++P+ ++ AL + +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L P A + L V+ P + L Q +
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLL---------PVLCQAHGLTPQQVVAIASNG 317
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKF 221
+ + + +L A + +PQ V A L + L
Sbjct: 318 GGKQALETVQRLLPVLCQAHGL----TPQQVVAIASHDGGKQALETVQRLLPVLCQ---- 369
Query: 222 EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
L E V+ ++
Sbjct: 370 ---------------------AHGLTPEQVVA---------IAS---------------- 383
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
G + + + + + + + A +
Sbjct: 384 --NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL 441
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
P A+ L + + L D+ VA + + AL +
Sbjct: 442 TPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVK 497
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 31/351 (8%), Positives = 74/351 (21%), Gaps = 33/351 (9%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ L + +A ++PE ++ AL + +
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLC 164
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L P A L V+ P + L Q +
Sbjct: 165 QAHGLTPEQVVAIASNGGGKQALETVQRLL---------PVLCQAHGLTPQQVVAIASNG 215
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
+ + + +L A + + + L + L
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLT-- 272
Query: 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284
P QV + + + + +A L V + +
Sbjct: 273 --PQQVVAIASNSGGKQALE--TVQRLLPVLCQAHGLTPQQVV---AIAS---------N 316
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344
G + + + + + + + A + P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
A+ + L + P ++ + +
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 33/353 (9%), Positives = 77/353 (21%), Gaps = 34/353 (9%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ L + +A ++P+ ++ AL + +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L P A L V+ P + L + +
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALL---------PVLCQAHGLTPEQVVAIASNG 181
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
+ + + +L A + +A L + L
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASNGGGKQALETVQRLLPVLCQAHGLT-- 238
Query: 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA-GLLDYSNVEIASVLTNVKMVVRART 283
P QV + + + + +A GL + + +
Sbjct: 239 --PQQVVAIASNGGGKQALE--TVQRLLPVLCQAHGL----TPQQVVAIAS--------- 281
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+ + + + + + + A + P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAESLHNAQVALKK 395
A+ + L + +A P S + AL+
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-PEQVVAIASNGGGKQALET 393
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-26
Identities = 34/348 (9%), Positives = 81/348 (23%), Gaps = 46/348 (13%)
Query: 59 YRKGNFVEALK-----LYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
VEA+ L ++++PE ++ AL + + +A L P
Sbjct: 44 RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103
Query: 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIG 171
A L V+ P + L + + + +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLL---------PVLCQAHGLTPEQVVAIASHDGGKQALE 154
Query: 172 DWKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDADSCLSNMPKFEHYSPPS 228
+ +L A + +P+ V L + L P
Sbjct: 155 TVQALLPVLCQAHGL----TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----PQ 206
Query: 229 QVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288
QV + + + + +A L V + + G
Sbjct: 207 QVVAIASNGGGKQALE--TVQRLLPVLCQAHGLTPQQVV---AIAS---------NGGGK 252
Query: 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
+ + + + + + + + A + P A
Sbjct: 253 QALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Query: 349 LLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAESLHNAQVALKK 395
+ + L + +A + ++ + +
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASHDGGKQA 356
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-19
Identities = 34/349 (9%), Positives = 76/349 (21%), Gaps = 36/349 (10%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLT--ALGRLTEAVSDCEEAV 109
+ + A +L + + + R A+ A++ +
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG--APL 65
Query: 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAES 167
L P A L V+ P + L Q +
Sbjct: 66 NLTPEQVVAIASHDGGKQALETVQRLL---------PVLCQAHGLTPQQVVAIASHDGGK 116
Query: 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP 227
+ + + +L A + + + A L + L P
Sbjct: 117 QALETVQRLLPVLCQAHGLTPEQVVAI-ASHDGGKQALETVQALLPVLCQAHGLT----P 171
Query: 228 SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN 287
QV + + + + +A L V + + G
Sbjct: 172 EQVVAIASNGGGKQALE--TVQRLLPVLCQAHGLTPQQVVA---IAS---------NGGG 217
Query: 288 LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK 347
+ + + + + + + A + P
Sbjct: 218 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 277
Query: 348 ALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
A+ + + L + A P S + AL+
Sbjct: 278 AIASNSGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGKQALET 325
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN+ + + + A Y + + D N N+A + + G + E C A+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 344 N-------YTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
KA R S K ++ +A+ Y +L +V + A+ LK+
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL--AEHRTPDVLKKCQQAEKILKE 127
Query: 396 S 396
Sbjct: 128 Q 128
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-25
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
A + K GN+ Y+K +F ALK YDKA + P N Y +N+AA G +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 105 CEEAVRLDPG-------YNRAHQRLASLYFRLGQVENARHHLCFP---GHHPDPNELLKL 154
CE+A+ + +A+ R+ + YF+ + ++A H + H P+ L K
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH--FYNKSLAEHRTPDVLKKC 118
Query: 155 QSFEKHL 161
Q EK L
Sbjct: 119 QQAEKIL 125
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 52/328 (15%), Positives = 98/328 (29%), Gaps = 82/328 (25%)
Query: 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138
A + EA+ +A L A+ + G+ E A
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETA--- 57
Query: 139 LCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC- 197
+ + A+ G ++ A
Sbjct: 58 ---------------ISTLND-----------------------AVEQG----REMRADY 75
Query: 198 --KAEAHLKLHQNEDA----DSCLSNMPKF--EHYSPPSQVKFLVWLLKLMFNISELRFE 249
+++ ++ + K EH + L KL E
Sbjct: 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI-------LTKLR------NAE 122
Query: 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309
+ AE ++ E A R G F+ + A AY E +K
Sbjct: 123 KELKKAEAEAYVNPEKAEEA------------RLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369
++ Y NRA +K+ + +I DCN A+ PN+ +A +R+A + + ++ A+
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230
Query: 370 E-ALRRELPGDNEVAESLHNAQVALKKS 396
+ A ++ N + + Q+ K S
Sbjct: 231 DAARTKD-AEVNNGSSAREIDQLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 44/328 (13%), Positives = 94/328 (28%), Gaps = 90/328 (27%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A++ K GN+ Y+ F EA++ Y+KA + + +NRAA G A+S +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAISTLND 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL-QSFEKHLNRCAE 166
AV ++ ++ + R+G + L + ++ Q
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDL---------KKTIEYYQKSLTEHRTADI 114
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDA----DSCLSNMP 219
K+ + + L++ +A + +P+ + + + +A + P
Sbjct: 115 LTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170
Query: 220 KFEHYSPPSQVKFLVW------LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT 273
+ + L KLM F A++ KA
Sbjct: 171 EDARG----------YSNRAAALAKLM------SFPEAIADCNKA--------------- 199
Query: 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIE 333
++ D Y +A + + +++E
Sbjct: 200 -------------------------------IEKDPNFVRAYIRKATAQIAVKEYASALE 228
Query: 334 DCNVALRIQPNYTKALLRRAVSNEKLGR 361
+ A R +
Sbjct: 229 TLDAARTKDAEVNNGSSAREIDQLYYKA 256
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 5e-20
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
AEE + G E + K ++ A+K Y + I +PE+A SNRAA L L EA++DC
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENA 135
+A+ DP + RA+ R A+ + + +A
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASA 226
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ + +F EA+ +KAI P +A A+ A+ + A D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 115 YNRAH--QRLASLYFRLGQ 131
N + + LY++ Q
Sbjct: 240 VNNGSSAREIDQLYYKASQ 258
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-25
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 18/141 (12%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------------------DSYNSILYC 316
+K V R +GN LF + Y EA AY + L D N LY
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376
N + C+ +G + E + L+ + KAL RRA + + EA D + L R
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 377 PGDNEVAESLHNAQVALKKSR 397
P V + +
Sbjct: 128 PAAASVVAREMKIVTERRAEK 148
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-14
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAIS------------------MSPENAAYRSNRA 89
E +++ GNE++ + ++ EA+ Y A++ + +N +N +
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 90 ATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
+G L EA E ++ + +A R A +++ A
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE 117
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 62 GNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
G+ EA + + + N A +R RA A +L EA D + +R P
Sbjct: 77 GDLHEAEETSSEVLKREETNEKALFR--RAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
Query: 120 QRL 122
R
Sbjct: 135 ARE 137
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 9e-25
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A K GN Y++ +F +A YDKAI + P N + +N+AA + E V CE+
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 108 AVRLDP-------GYNRAHQRLASLYFRLGQVENARHHLCFP---GHHPDPNELLKLQSF 157
AV + +A R + + + + A F DP + K++
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ--WFHRSLSEFRDPELVKKVKEL 125
Query: 158 EK 159
EK
Sbjct: 126 EK 127
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 7e-23
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + + + +A Y + ++ D N Y N+A + + + ++ C A+ +
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 344 N-------YTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQ 390
KA+ R + +K S AV+ + +L D E+ + + +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL--SEFRDPELVKKVKELE 126
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS----------------ILYCNR 318
V+ + GN F +EA Y E L + + N
Sbjct: 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378
A C++K + +I+ + L+I N KAL + V+N G EA + P
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Query: 379 DNEVAESLHNAQVALKKSR 397
+ ++ S LK++R
Sbjct: 155 NLDIRNSYELCVNKLKEAR 173
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----------------AAYRSNRAAT 91
A ++K GNE ++K EA+ Y +A+ + N A
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
+A+ + +++D +A +L G +E A+
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 62 GNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
++ +A+ K + + N A Y+ G L EA + +A L+P N
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYK--LGVANMYFGFLEEAKENLYKAASLNPN-NLDI 158
Query: 120 QRL 122
+
Sbjct: 159 RNS 161
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 3e-23
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS---------------ILYCNRA 319
++ + RG F +Y +A Y + + + Y S + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
+C K+ + +IE CN AL + N K L RR ++ + + A D++ + + P +
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 380 NEVAESLHNAQVALKKSR 397
L Q +++
Sbjct: 264 KAAKTQLAVCQQRIRRQL 281
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAIS---------------MSPENAAYRSNRAATL 92
+ VK G +++G + +AL Y K +S A N A
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206
Query: 93 TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
L + A+ C +A+ LD + R + + E AR
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 62 GNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
F A++ +KA+ + N R R A+ A +D ++ ++L P A
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSR--RGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 120 QRLASL 125
+LA
Sbjct: 268 TQLAVC 273
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 9e-23
Identities = 50/380 (13%), Positives = 104/380 (27%), Gaps = 93/380 (24%)
Query: 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATL 92
NN + + +N + E G M + N EA ++ +PE + T
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Query: 93 TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA--------RHHLCFPGH 144
+ A+ A LDP H LA + A +
Sbjct: 66 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Query: 145 HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204
+ + +++ AA+ + + A+ H
Sbjct: 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND--------AQLH-- 175
Query: 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-- 262
++ L +++N+S +++A ++ +A L
Sbjct: 176 -----------AS-------------------LGVLYNLSN-NYDSAAANLRRAVELRPD 204
Query: 263 ----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318
++ G L + R EA AY L + + N
Sbjct: 205 DAQLWNK------------------LGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKAL--------------LRRAVSNEKLGRWSE 364
A+ +S M ++ + + A+ +Q T R ++ + R
Sbjct: 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV--MNRPDL 304
Query: 365 AV----RDYEALRRELPGDN 380
++ E +E +
Sbjct: 305 VELTYAQNVEPFAKEFGLQS 324
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 38/325 (11%), Positives = 88/325 (27%), Gaps = 70/325 (21%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G+ ++ Y + ++ L L EA E + P A +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETD 181
L + A + +
Sbjct: 61 LGLTQAENEKDGLA------------------IIALNH---------------------- 80
Query: 182 AAIAIGVDSSPQLVAC---KAEAHLKLHQNEDADSC----LSNMPKFEHYSPPSQVKFLV 234
A + P+ +A A +H H A + L + P++E + +
Sbjct: 81 -ARML----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135
Query: 235 WLLKLMFNISEL-----RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289
+ + + + A ++ ++ + + + G
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---LHAS---------LGVLYN 183
Query: 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349
S Y A + ++ ++ L+ + + +++ N AL I P Y + +
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243
Query: 350 LRRAVSNEKLGRWSEAVRDYE-ALR 373
AVS + ++ A + A+
Sbjct: 244 YNMAVSYSNMSQYDLAAKQLVRAIY 268
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 5/143 (3%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G ++ +EA A+ + + + + ++ +I N A + P
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVN 402
AVS+ + A+ L + P ++ A V + + +
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 403 NM-KMSGEVEEISSLEKFKAAIS 424
E E AA+
Sbjct: 146 FFFAAPNEYRE--CRTLLHAALE 166
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 7/82 (8%), Positives = 19/82 (23%), Gaps = 5/82 (6%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALR 373
+ K+ + + P +A ++ + + A+ A
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR- 82
Query: 374 RELPGDNEVAESLHNAQVALKK 395
L + V+
Sbjct: 83 -MLDPKD--IAVHAALAVSHTN 101
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 46/333 (13%), Positives = 88/333 (26%), Gaps = 75/333 (22%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
E + + K Y ++ G L + E A+ DPG
Sbjct: 38 NQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG 97
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
A Q L + A + + ++
Sbjct: 98 DAEAWQFLGITQAENENEQAA------------------IVALQR--------------- 124
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHL-------KLHQNEDADSC----LSNMPKFE- 222
+ + P +A + +DA + PK++
Sbjct: 125 --------CLEL----QPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY 168
Query: 223 -HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
+ + K + S E +A + ++ + T
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSS--VLEGVKELYLEAAHQNGDMID-PDLQTG------- 218
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
G S ++ A A+ L + L+ + E ++E AL I
Sbjct: 219 --LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALR 373
QP + ++ +S LG + EAV ++ AL
Sbjct: 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 3e-20
Identities = 53/361 (14%), Positives = 92/361 (25%), Gaps = 80/361 (22%)
Query: 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLT 99
T N D G + ++G+ + + AI P +A T
Sbjct: 57 HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS--F 157
A+ + + L P +A LA Y ++A L +K
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL---------KNWIKQNPKYK 167
Query: 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSN 217
N+ ++ + EA + D D
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGV--------KELYLEAAHQNGDMIDPDL---- 215
Query: 218 MPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD------YSNVEIASV 271
L ++F++S F A+ + A + ++
Sbjct: 216 -----QTG-----------LGVLFHLSG-EFNRAIDAFNAALTVRPEDYSLWNR------ 252
Query: 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331
G L + R EA AY L+ N I +G + +
Sbjct: 253 ------------LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300
Query: 332 IEDCNVALRIQPNYTKAL--------------LRRAVSNEKLGRWSEAV--RDYEALRRE 375
+ + AL +Q LR A+S +A D + L R
Sbjct: 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360
Query: 376 L 376
Sbjct: 361 F 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 8/142 (5%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G + D ++ + I ++ + +I L +QP
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVN 402
N KAL+ AVS +A + +++ P + N + + +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKY---KYLVKNKKGSPGLT-RRMSK 185
Query: 403 NMKMSGEVEEISSLEKFKAAIS 424
+ S +E + E + A
Sbjct: 186 SPVDSSVLEGV--KELYLEAAH 205
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 19/149 (12%), Positives = 41/149 (27%), Gaps = 9/149 (6%)
Query: 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307
FE A ++ E + + + + S + Y +
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWI----SENQEAQNQVTVSASEKGYYFHTEN 60
Query: 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367
+ + K G +I A+ P +A ++ + A+
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 368 DYE-ALRRELPGDNEVAESLHNAQVALKK 395
+ L EL +N ++L V+
Sbjct: 121 ALQRCL--ELQPNN--LKALMALAVSYTN 145
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 4e-22
Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 62/322 (19%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTE-AVSDCEEAVRLDP 113
+ E L K + + P N +G E A +A L+
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 114 GYNRAHQRLASLYFRLGQVENARHHL-----CFPGHHPDPNELLKLQSFEKHLNRCAESR 168
Y A + + + A G H L E
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------------LPMLYIGLEYG 170
Query: 169 KIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPS 228
+ K R A++I P ++ + + + A+
Sbjct: 171 LTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW-------------- 215
Query: 229 QVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL 288
F +A+ + G + + + +L N G+
Sbjct: 216 -------------------FLDALEKIKAIGN-EVTVDKWEPLLNN---------LGHVC 246
Query: 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
++Y+EA + + L N+ Y S MG +EN+++ + AL ++ + T +
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Query: 349 LLRRAVSNEKLGRWSEAVRDYE 370
+ E SEA +
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGAD 328
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 36/342 (10%), Positives = 85/342 (24%), Gaps = 74/342 (21%)
Query: 62 GNF-VEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
G++ + + +++ EN + A + DP +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNR-CAESRKIGDWKTVL 177
L + + ++L+ L + C + V
Sbjct: 61 VHIGTLVELNKANELFYLS---------HKLVDLYPSNPVSWFAVGCY-------YLMVG 104
Query: 178 RETDAAI-----AIGVDSSPQLVACKAEAHL-------KLHQNEDADSC----LSNMPKF 221
+ + A A ++ + A + +++ A + M
Sbjct: 105 HKNEHARRYLSKATTLEKT------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG- 157
Query: 222 EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
+ P L + + A +A + + V+
Sbjct: 158 -CHLP--------MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---VMHE------- 198
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSY---------NSILYCNRAICWSKMGLWENSI 332
G F + + A + + L+ L N K+ + ++
Sbjct: 199 --VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY-EALR 373
+ AL + P + +G + AV + AL
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 42/314 (13%), Positives = 83/314 (26%), Gaps = 44/314 (14%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
Y +F KL + P +A+ TL L + E + V L P
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88
Query: 115 YNRAHQRLASLYFRLGQ-VENARHHL---------CFPGHHPDPNELLKLQSFEK----- 159
+ + Y +G E+AR +L P + ++
Sbjct: 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148
Query: 160 -------------HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206
L E + K R A++I P ++ +
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNG 207
Query: 207 QNEDADSCLSN--MPKFEHYSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDY 263
+ + A+ + + + K+ L L +L ++ A+ +A +L
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 264 SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323
N AS + G + A + L ++ C
Sbjct: 268 QN---ASTYSA---------IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315
Query: 324 KMGLWENSIEDCNV 337
+ ++
Sbjct: 316 MYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G++ + +A +AY + + + + + + + AL I P
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEV-----AESLHNAQVALKK 395
+ V + G W A + + AL + NEV L+N +K
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 23/207 (11%), Positives = 52/207 (25%), Gaps = 24/207 (11%)
Query: 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFEN 250
+ +V AE H + S + + + P L + + ++ +
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----PFHASCLPVHIGTLVELN--KANE 74
Query: 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS-SRRYSEACSAYGEGLKYDS 309
+ K L SN + G + A + +
Sbjct: 75 LFYLSHKLVDLYPSNPVSWFAV------------GCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369
+ ++ + ++ A ++ +L + A R +
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182
Query: 370 E-ALRRELPGDNEVAESLHNAQVALKK 395
AL P D +H V +
Sbjct: 183 SQALSIA-PED---PFVMHEVGVVAFQ 205
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 99.7 bits (248), Expect = 4e-22
Identities = 26/343 (7%), Positives = 68/343 (19%), Gaps = 34/343 (9%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
L + +A ++P+ ++ AL + + +A L P
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIGD 172
A L V+ P + L + + +
Sbjct: 395 QVVAIASNGGKQ-ALETVQRLL---------PVLCQAHGLTPDQVVAIASHDGGKQALET 444
Query: 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232
+ +L + +A L + L +
Sbjct: 445 VQRLLPVLCQTHGLTPAQ-VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN 503
Query: 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
+ L + + +A L V + + G +
Sbjct: 504 IGGKQALA------TVQRLLPVLCQAHGLTPDQVVAIA------------SNGGGKQALE 545
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ + + + + + A + A+
Sbjct: 546 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
+ L + P ++ + +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQ---VVAIASHDGGKQA 645
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 8e-22
Identities = 33/355 (9%), Positives = 75/355 (21%), Gaps = 42/355 (11%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ L + +A + P+ ++ AL + +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--SFEKHLNRC 164
+A L P A L V+ P + L +
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASHD 335
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKF 221
+ + + +L A + +P V A L + L
Sbjct: 336 GGKQALETVQRLLPVLCQAHGL----TPDQVVAIASNGGGKQALETVQRLLPVLCQ---- 387
Query: 222 EHYSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280
H P Q V + L + + +A L V + +
Sbjct: 388 AHGLTPDQ----VVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVV---AIAS------ 434
Query: 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340
+ + + + + + + A
Sbjct: 435 ---HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG 491
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
+ P+ A+ + L + P ++ + +
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQA 543
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 2e-20
Identities = 32/343 (9%), Positives = 72/343 (20%), Gaps = 31/343 (9%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
L + +A ++P ++ AL + + +A L P
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD 258
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIGD 172
A L V+ P + L + + +
Sbjct: 259 QVVAIASNIGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASHGGGKQALET 309
Query: 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232
+ +L A + D + + L + L P QV
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIAS-HDGGKQALETVQRLLPVLCQAHGLT----PDQVVA 364
Query: 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
+ + + + +A L V + + G +
Sbjct: 365 IASNGGGKQALE--TVQRLLPVLCQAHGLTPDQVVAIA------------SNGGKQ-ALE 409
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ + + + + + + P A+
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASH 469
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
+ L + + P S + AL
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALAT 512
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 2e-20
Identities = 28/337 (8%), Positives = 71/337 (21%), Gaps = 35/337 (10%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
L + +A ++P+ ++ AL + + + L P A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--SFEKHLNRCAESRKIGDWKTVLRE 179
L V+ P + L + + + + +L
Sbjct: 469 HDGGKQALETVQQLL---------PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519
Query: 180 TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL 239
A + D +A L + L + L
Sbjct: 520 LCQAHGLTPDQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 578
Query: 240 MFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299
+ + +A L V + + +
Sbjct: 579 E------TVQRLLPVLCQAHGLTQVQVV---AIAS---------NIGGKQALETVQRLLP 620
Query: 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359
+ + + + + + A + P+ A+ + L
Sbjct: 621 VLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680
Query: 360 GRWSEAVRDY-EALRRELPGDNEVAESLHNAQVALKK 395
+ +A E ++ + +
Sbjct: 681 ETVQRLLPVLCQAHGL----TQEQVVAIASNNGGKQA 713
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 7e-20
Identities = 31/353 (8%), Positives = 73/353 (20%), Gaps = 34/353 (9%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ + L + +A ++P+ ++ AL + +
Sbjct: 462 QVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLC 521
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L P A L V+ P + L +
Sbjct: 522 QAHGLTPDQVVAIASNGGGKQALETVQRL---------LPVLCQAHGLTPDQVVAIASNG 572
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
+ + + +L A + +A L + L
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQV-QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLL--DYSNVEIASVLTNVKMVVRAR 282
+ L + + +A L D + +
Sbjct: 632 QVVAIASHDGGKQALE------TVQRLLPVLCQAHGLTPDQ-----VVAIAS-------- 672
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
G + + + + + + + A +
Sbjct: 673 -NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
P+ A+ + L + P S + AL+
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALET 784
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-18
Identities = 31/345 (8%), Positives = 72/345 (20%), Gaps = 30/345 (8%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
L + +A ++P+ ++ AL + + +A L P
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIGD 172
A L V+ P + L + + +
Sbjct: 564 QVVAIASNGGGKQALETVQRLL---------PVLCQAHGLTQVQVVAIASNIGGKQALET 614
Query: 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232
+ +L A + +A L + L P QV
Sbjct: 615 VQRLLPVLCQAHGLTPA-QVVAIASHDGGKQALETVQRLLPVLCQAHGLT----PDQVVA 669
Query: 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292
+ + + + +A L V + + +
Sbjct: 670 IASNGGGKQALE--TVQRLLPVLCQAHGLTQEQVV---AIAS---------NNGGKQALE 715
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ + + + + + A + P A+
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775
Query: 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
+ L + S + AL+ +
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ 820
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 5e-18
Identities = 31/354 (8%), Positives = 78/354 (22%), Gaps = 40/354 (11%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
++ + G + L ++++P ++ AL + +
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L P A L ++ P + L +
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLL---------PVLCQAHGLPPDQVVAIASNI 267
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKF 221
+ + + +L A + +P V A L + L
Sbjct: 268 GGKQALETVQRLLPVLCQAHGL----TPDQVVAIASHGGGKQALETVQRLLPVLCQAHGL 323
Query: 222 EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
P QV + + + + +A L V + +
Sbjct: 324 T----PDQVVAIASHDGGKQALE--TVQRLLPVLCQAHGLTPDQVV---AIAS------- 367
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
G + + + + + + + A +
Sbjct: 368 --NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQRLLPVLCQAHGL 424
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
P+ A+ + L + P ++ + +
Sbjct: 425 TPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ---VVAIASHDGGKQA 475
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 9e-14
Identities = 37/353 (10%), Positives = 83/353 (23%), Gaps = 37/353 (10%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ L + +A ++P ++ AL + +
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLC 657
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS--FEKHLNRC 164
+A L P A L V+ P + L +
Sbjct: 658 QAHGLTPDQVVAIASNGGGKQALETVQRLL---------PVLCQAHGLTQEQVVAIASNN 708
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKF 221
+ + + +L A + +P V A L + L
Sbjct: 709 GGKQALETVQRLLPVLCQAHGL----TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 764
Query: 222 EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
P+QV + S + + A+ + ++ L + VV
Sbjct: 765 T----PAQVVAIA---------SNIGGKQALETVQRL-LPVLCQDHGL----TLAQVVAI 806
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ + + + + + + + +
Sbjct: 807 ASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGL 866
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
P+ A+ + L + L D VA + + + AL+
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQD-HGLTLDQVVAIASNGGKQALE 918
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 1e-12
Identities = 30/337 (8%), Positives = 72/337 (21%), Gaps = 44/337 (13%)
Query: 66 EALKLYDKAISMSPENAAYRSNR--AATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123
+A +L + + + R + A+ A++ + L P A
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTG--APLNLTPAQVVAIASNN 199
Query: 124 SLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIGDWKTVLRETD 181
L V+ P + L + + + + +L
Sbjct: 200 GGKQALETVQRLL---------PVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC 250
Query: 182 AAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238
A + P V A L + L P QV +
Sbjct: 251 QAHGL----PPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHGG 302
Query: 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298
+ + + +A L V + + +
Sbjct: 303 GKQALE--TVQRLLPVLCQAHGLTPDQVV---AIAS---------HDGGKQALETVQRLL 348
Query: 299 SAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358
+ + + + + + A + P+ A+ +
Sbjct: 349 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQA 407
Query: 359 LGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
L + P ++ + +
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQA 441
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-11
Identities = 36/360 (10%), Positives = 82/360 (22%), Gaps = 51/360 (14%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ L + +A ++P+ ++ AL + +
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 691
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNRC 164
+A L A L V+ P + L +
Sbjct: 692 QAHGLTQEQVVAIASNNGGKQALETVQRL---------LPVLCQAHGLTPDQVVAIASNG 742
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLV---ACKAEAHLKLHQNEDADSCLSNMPKF 221
+ + + +L A + +P V A L + L
Sbjct: 743 GGKQALETVQRLLPVLCQAHGL----TPAQVVAIASNIGGKQALETVQRLLPVLCQDHGL 798
Query: 222 EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281
+QV + + + + + +A L V
Sbjct: 799 T----LAQVVAIASNIGGKQALE--TVQRLLPVLCQAHGLTQDQVVA------------- 839
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ S+ +A L + L ++ + + + ++E L +
Sbjct: 840 ------IASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893
Query: 342 Q-------PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
+ A+ + L + P S + AL+
Sbjct: 894 LCQDHGLTLDQVVAIASNG-GKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALE 952
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 33/336 (9%), Positives = 72/336 (21%), Gaps = 31/336 (9%)
Query: 60 RKGNFVEALKLYDKAISMSPENA-----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
Y I+ PE + LT+A ++LD G
Sbjct: 97 HPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTG 156
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
+ + + V +R+ L + P + + + +
Sbjct: 157 QLVKIAKRGGVT-AMEAVHASRNALTGAPLNLTP------AQVVAIASNNGGKQALETVQ 209
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234
+L A + +A L + L P QV +
Sbjct: 210 RLLPVLCQAHGLTPA-QVVAIASHDGGKQALETMQRLLPVLCQAHGLP----PDQVVAIA 264
Query: 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294
+ + + + +A L V + + G +
Sbjct: 265 SNIGGKQALE--TVQRLLPVLCQAHGLTPDQVV---AIAS---------HGGGKQALETV 310
Query: 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354
+ + + + + + A + P+ A+
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGG 370
Query: 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+ L + P S Q
Sbjct: 371 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 7e-22
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+T+ N+ F ++ Y A Y + ++ + N+I Y NR++ + + + ++ D A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFV 401
Y K RRA SN LG++ A+RDYE + + P D + +K+ F
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA--FE 127
Query: 402 NNMKMSGEVEEISS 415
+ +
Sbjct: 128 RAIAGDEHKRSVVD 141
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A+ D
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ LD Y + + R A+ LG+ A D ++K++ +K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALR---------DYETVVKVKPHDKDAK----- 111
Query: 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVA 196
K + ++++ AI D + V
Sbjct: 112 MKYQECNKIVKQKAFERAIAGDEHKRSVV 140
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 7e-22
Identities = 56/381 (14%), Positives = 98/381 (25%), Gaps = 93/381 (24%)
Query: 66 EALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
YDK EN G L AV E AV+ DP + A Q
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETD 181
L + Q A + + +
Sbjct: 104 LGTTQAENEQELLA------------------ISALRR---------------------- 123
Query: 182 AAIAIGVDSSPQLVACKAEAHL-------KLHQNEDADSC----LSNMPKFEH-YSPPSQ 229
+ + P A + A L P + H +P +
Sbjct: 124 -CLEL----KPDN----QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 230 VKFLVWLLKLMFNISEL----RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285
L + L F A LD ++++ V G
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID-PDVQCG---------LG 224
Query: 286 NNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345
S Y +A + L + +L+ + E ++ AL +QP Y
Sbjct: 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284
Query: 346 TKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM 404
++ +S LG EAV + AL + + + + +
Sbjct: 285 IRSRYNLGISCINLGAHREAVEHFLEAL--NMQRKS--RGPRGEGGAMSE----NIWSTL 336
Query: 405 KMSGEVEEISSLEKFKAAISS 425
+++ +S L + A ++
Sbjct: 337 RLA-----LSMLGQSDAYGAA 352
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-15
Identities = 53/369 (14%), Positives = 95/369 (25%), Gaps = 90/369 (24%)
Query: 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLT 99
+ N D + G ++G+ A+ L++ A+ P++ T +
Sbjct: 56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA--------RHHLCFPGHHPDPNEL 151
A+S + L P A LA + A R+ + E
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 152 LKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL-------K 204
+ V AA+ + P + +
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL----DPTSI--DPDVQCGLGVLFNL 229
Query: 205 LHQNEDADSC----LSNMPKFEHYSPPSQVKFLVWLLKLMFNI----SEL-RFENAVSSA 255
+ + A C LS P +L+W + + + E AV++
Sbjct: 230 SGEYDKAVDCFTAALSVRPND----------YLLW-----NKLGATLANGNQSEEAVAAY 274
Query: 256 EKAGLL--DYSNVEIASVLTNVKMVVRART-RGNNLFSSRRYSEACSAYGEGLKYDSYNS 312
+A L Y +R+R G + + + EA + E L +
Sbjct: 275 RRALELQPGY---------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319
Query: 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV----RD 368
+W LR A+S LG+ RD
Sbjct: 320 GPRGEGGAMSEN--IWST-------------------LRLALS--MLGQSDAYGAADARD 356
Query: 369 YEALRRELP 377
L
Sbjct: 357 LSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 2/101 (1%)
Query: 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN--AAYRSNRAATLTA 94
+ KR + F+E +L+ A+ + P + +
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
G +AV A+ + P +L + Q E A
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 10/121 (8%)
Query: 281 ARTRGNNLFSSRRYSEACSA-YGEGLKYDSYNSIL----YCNRAICWSKMGLWENSIEDC 335
A+ Y + SA Y +G +++ N + + + G N++
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALK 394
A++ P + +A + + + A+ L EL DN +L V+
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL--ELKPDN--QTALMALAVSFT 143
Query: 395 K 395
Sbjct: 144 N 144
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 3e-20
Identities = 39/299 (13%), Positives = 85/299 (28%), Gaps = 63/299 (21%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
++ G + + + + PE A + +++EA ++ +DP
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 115 YNRAHQRLASLYFRLGQVENARHHL-----CFPGHHPDPNELLKLQSFEKHLNRCAESRK 169
+ A A + G+ + A F G H +L + +
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH------------LPYLFLGMQHMQ 453
Query: 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229
+G+ ++ A+ P L+ + A +
Sbjct: 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH--------------- 497
Query: 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289
F+NA+ +K + N G+
Sbjct: 498 ------------------FQNALLLVKKTQSNEKPWAAT---WAN---------LGHAYR 527
Query: 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
+ Y A A +GL + ++ ++ A+ + + +I + +L I PN A
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 2e-19
Identities = 40/361 (11%), Positives = 101/361 (27%), Gaps = 68/361 (18%)
Query: 59 YRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118
+ + + Y +I+ +++ +A TL R + ++ + + +DP
Sbjct: 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341
Query: 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQ--SFEKHLNRCAESRKIGDWKTV 176
+ + G+ N+L+ L +G +
Sbjct: 342 YPLHLASLHESGEKNKLYLIS---------NDLVDRHPEKAVTWLA-------VGIYYLC 385
Query: 177 LRETDAAI-----AIGVDSSPQLVACKAEAHL-------KLHQNEDA----DSCLSNMPK 220
+ + A + +D A + +++ A +
Sbjct: 386 VNKISEARRYFSKSSTMDPQ------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 221 FEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV----EIASVLTNVK 276
L +L M ++ A + + L + E+ V N
Sbjct: 440 T----------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489
Query: 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336
+ A + A + + + + N + K+ +++ +I+ N
Sbjct: 490 DMQTAI---------NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 337 VALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAESLHNAQVALKK 395
L + N A+ A+ E+L P + + + AL++
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNE---IMASDLLKRALEE 596
Query: 396 S 396
+
Sbjct: 597 N 597
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 3e-19
Identities = 48/369 (13%), Positives = 102/369 (27%), Gaps = 42/369 (11%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + + A KL + + E + R T L A +EA+ +D
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNLSNFDRAKECYKEALMVDAK 232
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
A +L S + E + + + LN+ + ++
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR-- 290
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234
+ ++I ++ S L+ CKA+ + D + + + + + Y+ L
Sbjct: 291 --AEDYLSSING-LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347
Query: 235 WLLKLMFNISELRFENAVSSAEKAGLLD------YSNVEIASVLTNVKMVVRART----- 283
L + + + V V + AR
Sbjct: 348 SLHESG------EKNKLYLISNDLVDRHPEKAVTWLAV--GIYYLCVNKISEARRYFSKS 399
Query: 284 -------------RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330
++ + +A SAY + + Y + ++G
Sbjct: 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459
Query: 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALR---RELPGDNEVAESL 386
+ E + + L V A+ ++ AL + + A +
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 387 HNAQVALKK 395
N A +K
Sbjct: 520 ANLGHAYRK 528
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 48/377 (12%), Positives = 109/377 (28%), Gaps = 33/377 (8%)
Query: 6 SNRTDTLGTGTGNYGHGSIVRSCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFV 65
+N L T T + + + N + ++ + ++ ++ + +
Sbjct: 42 NNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK 101
Query: 66 EALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124
A + +K + ++ N A+ A G A + L + A
Sbjct: 102 CAAFVGEKVLDITGNPNDAF--WLAQVYCCTGDYARAKCLLTKE-DLYNRSSACRYLAAF 158
Query: 125 LYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAES--------RKIGDWKT 175
+L + A + L D KL + + A + ++
Sbjct: 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218
Query: 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVW 235
A+ + EA +L N + + + K
Sbjct: 219 AKECYKEALMVDAKC--------YEAFDQLVSNH-LLTADEEWDLVLKLNYSTYSKEDAA 269
Query: 236 LLKLMFN--ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293
L+ ++ +++ E+ + AE + + +L + + LF R
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC---------KADTLFVRSR 320
Query: 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353
+ + + + L+ D YN +Y + G N + P L
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380
Query: 354 VSNEKLGRWSEAVRDYE 370
+ + + SEA R +
Sbjct: 381 IYYLCVNKISEARRYFS 397
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 34/268 (12%), Positives = 70/268 (26%), Gaps = 55/268 (20%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G EA + + K+ +M P+ A + G +A+S A RL G
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
+ + L + +LG + A + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLA------------------NEYLQS--------------- 466
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234
+ A+ P L+ + A + N + ++ +
Sbjct: 467 --------SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517
Query: 235 WLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR 293
L +L ++ A+ + + LL ++ A+V T +
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTA---------IALVYLHKKI 565
Query: 294 YSEACSAYGEGLKYDSYNSILYCNRAIC 321
A + E L +
Sbjct: 566 PGLAITHLHESLAISPNEIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 5e-10
Identities = 10/72 (13%), Positives = 25/72 (34%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G+ + + A+ ++ + +S +A + A A++ E++ + P
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
Query: 115 YNRAHQRLASLY 126
A L
Sbjct: 583 EIMASDLLKRAL 594
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 1e-19
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)
Query: 330 NSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE----LPGDNEVAES 385
+ + P K +LR+ S + R + + + D E
Sbjct: 17 RKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGC 76
Query: 386 LHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAI--SSPGVSL-VHFKEASSEKCE 442
L + + + ++ G V E+ + E+F I ++ V+ E C+
Sbjct: 77 LRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCD 136
Query: 443 EISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQF 502
++ + L YP V F K+ + A + +PT +YK GE + I+ + QF
Sbjct: 137 ALNSSLECLAAEYPMVKFCKIRASNTGAGDRF-SSDVLPTLLVYKGGELISNFISVAEQF 195
Query: 503 LED 505
ED
Sbjct: 196 AED 198
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-----------------SILYCNR 318
R + GN+LF + EA Y + Y + + + N
Sbjct: 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNI 236
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378
A C K+ ++ +I CN+ L + KAL RR + +LG+ A D+ ++ P
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 379 DNEVAESLHNAQVALKKSR 397
D + L K
Sbjct: 297 DKAIRRELRALAEQEKALY 315
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYR-----------------SNRAA 90
A+ K GN ++++ EA++ Y+ AI+ ++ ++ N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 91 TLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
L L R EA+ C + + +A R LGQ+++AR
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 62 GNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
+ EA+ + ++ +N A +R R LG++ A D +A + P
Sbjct: 244 KRYDEAIGHCNIVLTEEEKNPKALFR--RGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 120 QRLASL 125
+ L +L
Sbjct: 302 RELRAL 307
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245 | Back alignment and structure |
|---|
Score = 85.9 bits (212), Expect = 4e-19
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 8/171 (4%)
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALR----RELPGDNEVAESLHNAQVALKKSR 397
+ K +LR+ S + R + + D E L + +
Sbjct: 42 VAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDM 101
Query: 398 GEFVNNMKMSGEVEEISSLEKFKAAI--SSPGVS-LVHFKEASSEKCEEISPFVNLLCVR 454
+ ++ G V E+ S E+F I + +VH E + C+ ++ + L
Sbjct: 102 HQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAE 161
Query: 455 YPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
YP V F K+ + A + +PT +YK GE L I+ + Q E+
Sbjct: 162 YPMVKFCKIKASNTGAGDRF-SSDVLPTLLVYKGGELLSNFISVTEQLAEE 211
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-18
Identities = 39/340 (11%), Positives = 81/340 (23%), Gaps = 86/340 (25%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMS----PENAAYRSNRAATLTALGRLTEAV 102
+ + + L ++ ++ E A R +LG A
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 103 SDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEK--- 159
+D +A+ + P L + G + A ++F+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA------------------YEAFDSVLE 105
Query: 160 --------HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDA 211
HLNR G K + A + P A KL + +
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAK 164
Query: 212 DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIAS 270
+ + K + + + NISE E + A +A
Sbjct: 165 EVLKQHFEKSDKEQWGWNIVEFY-----LGNISEQTLMERLKADATDN-------TSLAE 212
Query: 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330
SE + +G ++
Sbjct: 213 ----------------------HLSET-----------------NFYLGKYYLSLGDLDS 233
Query: 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ +A+ + + LG+ + + + +
Sbjct: 234 ATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 6e-13
Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 246 LRFENAVSSAEKA-GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG 304
L+ E ++ E+ ++ E A +L RG S + A + + +
Sbjct: 19 LQQEVILARMEQILASRALTDDERAQLLYE---------RGVLYDSLGLRALARNDFSQA 69
Query: 305 LKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE 364
L ++ I ++ G ++ + E + L + P Y A L R ++ GR
Sbjct: 70 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129
Query: 365 AVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
A D + + P D + L+ A+ L +
Sbjct: 130 AQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDE 160
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L + + A A+ L+ D + + NR I G + + +D + P
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
N L ++ +KL +A + + + + + +
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 9/53 (16%), Positives = 22/53 (41%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
G G+ A L+ A++ + N L+ LG+ + +++ ++
Sbjct: 222 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-18
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 398 GEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVR 454
G ++ + ++++L +F+ I ++ F + C+ + P + L
Sbjct: 2 GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDF---YATWCGPCKMMQPHLTKLIQA 58
Query: 455 YPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
YP V F K DV+ES IAK V +PTF + K+G+ + ++I
Sbjct: 59 YPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKII 100
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-18
Identities = 17/112 (15%), Positives = 39/112 (34%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G N + + ++ +A + D Y++ + C +GL+E +++ + +
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
N + A + +LG A + + R A L+
Sbjct: 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 1e-17
Identities = 18/93 (19%), Positives = 35/93 (37%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
E++ G Y+ G + +A K++ + +A Y A +LG +A+
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+D R A + +LG ++ A
Sbjct: 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 5e-09
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G G + +AL+ Y M + + A LG L A S A L
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Query: 115 ---YNRAHQRLASL 125
+ R ++
Sbjct: 119 QPAHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 11/65 (16%), Positives = 17/65 (26%)
Query: 71 YDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG 130
+S + G+ +A + LD R L + LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 131 QVENA 135
E A
Sbjct: 67 LYEQA 71
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-05
Identities = 8/97 (8%), Positives = 23/97 (23%), Gaps = 2/97 (2%)
Query: 300 AYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359
+ G W+++ + + + L + L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 360 GRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
G + +A++ Y + + + L
Sbjct: 66 GLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 3e-17
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 20/169 (11%)
Query: 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303
+EL +E ++ + +G F +Y +A YG+
Sbjct: 239 AELIYE-----VTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGK 293
Query: 304 GLKYDSYNS---------------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
+ + + N A+C+ K+ + ++E C+ AL + K
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353
Query: 349 LLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
L RR + + + A D+E + P + + Q K+
Sbjct: 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 15/105 (14%)
Query: 50 EVKRAGNEMYRKGNFVEALKLYDKAIS----MSPENAAYRS-----------NRAATLTA 94
VK G ++ G +++A+ Y K +S + N A
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
L T+AV C++A+ LD + R + + E+A+
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 62 GNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118
+ +A++ DKA+ + N YR R + A D E+ + ++P N+A
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYR--RGEAQLLMNEFESAKGDFEKVLEVNPQ-NKA 386
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-17
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 410 VEEISSLEKFKAAISSPGVSL--VHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V+ + S F+ +S G L V F C I+P + + +YP F +VDV +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
A + + PTF+ ++N ++ +
Sbjct: 63 CQGTAATNNISATPTFQFFRNKVRIDQYQ 91
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-17
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVSLV--HFKEASSE---KCEEISPFVNLLCVRYPYVHF 460
G V++I S F+ A+ + G LV F S+ + I PF + L +Y V F
Sbjct: 9 HHGSVKQIESKTAFQEALDAAGDKLVVVDF---SATWCGPSKMIKPFFHSLSEKYSNVIF 65
Query: 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+VDV++ +A V+++PTF+ +K G+K+ E
Sbjct: 66 LEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFS 101
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 1e-16
Identities = 15/93 (16%), Positives = 23/93 (24%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+++ + Y KG EA + N Y AA + +A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
A L RL A+
Sbjct: 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 7e-15
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 4/111 (3%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+ ++ R EA + YD YN A + ++ + + VA +
Sbjct: 42 YAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394
N + +L +A +E + + D ++ AQ L
Sbjct: 102 NDYTPVFHTGQCQLRLKAPLKAKECFELV-IQHSNDEKLKI---KAQSYLD 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-08
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
K F +A LY A ++ + + L +A E ++
Sbjct: 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Query: 115 ---YNRAHQRLASL 125
+A L ++
Sbjct: 137 EKLKIKAQSYLDAI 150
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSD 104
+++ E + + + + ++ + + A GR+ EA
Sbjct: 2 SLNITENESISTAVID---AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVF 58
Query: 105 CEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
D LA++Y Q + A
Sbjct: 59 FRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 16/166 (9%)
Query: 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307
F S + ++V++ V + + + GN F S+ + A Y + L+Y
Sbjct: 193 FPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRY 252
Query: 308 ----------------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351
N C KM W+ +++ C AL I P+ TKAL R
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR 312
Query: 352 RAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
RA + L + +A+ D + + P D + L + +K +
Sbjct: 313 RAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 7e-08
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAI--------SMSPENAAY--------RSNRAAT 91
+E++K GN ++ N+ A+K Y K + + + A N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
+ AV C EA+ +DP +A R A + L + + A
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-16
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 410 VEEISSLEKFKAAISSPGVSLV--HFKEASSE---KCEEISPFVNLLCVRYPYVHFFKVD 464
V++I S F+ A+ + G LV F S+ C+ I PF + L +Y V F +VD
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDF---SATWCGPCKMIKPFFHSLSEKYSNVIFLEVD 58
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
V++ +A V+++PTF+ +K G+K+ E
Sbjct: 59 VDDCQDVASESEVKSMPTFQFFKKGQKVGEFS 90
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 3e-16
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVS----LVHFKEASSEKCEEISPFVNLLCVRYPYVHFF 461
G V I++ E++ +S L +F +I+P+ L YP + F
Sbjct: 22 AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFL 81
Query: 462 KVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+DV+E + S ++ PTF ++G+++ +++
Sbjct: 82 VIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLV 116
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-16
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 406 MSGEVEEISSLEKF----KAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYV 458
++ EV + SLE++ + A ++ + ++ F ++ C ++P L ++P
Sbjct: 10 VAAEVISVHSLEQWTMQIEEANTAKKLVVIDF---TASWCGPCRIMAPVFADLAKKFPNA 66
Query: 459 HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVDV+E IA+ V +PTF K G+ ++
Sbjct: 67 VFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVV 104
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 34/316 (10%), Positives = 82/316 (25%), Gaps = 64/316 (20%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE---EAVRL 111
+ +++ N+ EA+++++K + + + RA L + A D E V
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69
Query: 112 DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQS--FEKHLNRCAESRK 169
+ + + + GQ A + + + + +
Sbjct: 70 TKAKSADFEYYGKILMKKGQDSLAIQQY---------QAAVDRDTTRLDMYGQIGSYFYN 120
Query: 170 IGDWKTVLRETDAAIAIGVDSSPQLVAC---KAEAHLKLHQNEDADSCLSNMPKFEHYSP 226
G++ ++ + I + +A+ + ADS + + +
Sbjct: 121 KGNFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK---- 172
Query: 227 PSQVKFLVWLLKLMFNISEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285
P+ +W + + A EK +E+ +
Sbjct: 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL-------IEVCA--------------P 211
Query: 286 NNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345
EA A ++ + L + P
Sbjct: 212 GGAKYKDELIEA-----------------NEYIAYYYTINRDKVKADAAWKNILALDPTN 254
Query: 346 TKALLRRAVSNEKLGR 361
KA+ + E
Sbjct: 255 KKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 12/87 (13%), Positives = 25/87 (28%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L + S A Y + D+ +Y + G + +I+ +R
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
K + + +A +
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFV 166
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV---ALR 340
+ LF + Y+EA + + + +Y RA+C+ ++ ++ + +D +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ K G+ S A++ Y+
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 15/127 (11%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
+ A+ + A D + ++ + G+ ++ + A + ++
Sbjct: 89 QDSLAIQQYQAAVDRDTTRLD---MYGQ---------IGSYFYNKGNFPLAIQYMEKQIR 136
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG---RWS 363
+ + ++ + + + L ++PN L RA +N +
Sbjct: 137 PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 364 EAVRDYE 370
A YE
Sbjct: 197 LAKPYYE 203
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 15/127 (11%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEA---CSAYGE 303
+ A+ K Y++ I R + +Y A Y
Sbjct: 18 NYAEAIEVFNKLEAKKYNSPYIY------------NRRAVCYYELAKYDLAQKDIETYFS 65
Query: 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363
+ S + K G +I+ A+ + G +
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125
Query: 364 EAVRDYE 370
A++ E
Sbjct: 126 LAIQYME 132
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 10/88 (11%)
Query: 53 RAGNEMYRKGNFVEALKLYDKAISMSPENA---------AYRSNRAATLTALGRLTEAVS 103
RA A Y+K I + A A T +A +
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN-EYIAYYYTINRDKVKADA 242
Query: 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQ 131
+ + LDP +A L
Sbjct: 243 AWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 16/81 (19%), Positives = 26/81 (32%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374
A K + +IE N + N RRAV +L ++ A +D E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 375 ELPGDNEVAESLHNAQVALKK 395
++ + L K
Sbjct: 66 KVNATKAKSADFEYYGKILMK 86
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
N A L EA+ + + R A Y+ L + + A
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLA 56
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-16
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
+ ++E+ I + L+ K + C+ + VN + Y YV ++ +++
Sbjct: 2 MNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQ 61
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMI 496
IA V T PT ++ NG+++
Sbjct: 62 EIAGRYAVFTGPTVLLFYNGKEILRES 88
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-16
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVS----LVHFKEASSE---KCEEISPFVNLLCVRYPYV 458
G V + ++F +++ + ++ F ++ C I+P ++P
Sbjct: 4 EEGAVIACHTKQEFDTHMANGKDTGKLVIIDF---TASWCGPCRVIAPVFAEYAKKFPGA 60
Query: 459 HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVDV+E +A++ V +PTF K+GEK+ ++
Sbjct: 61 IFLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVV 98
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 9e-16
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 402 NNMKMSGE---VEEISSLEKFKAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVRY 455
+ ++M V ++ S+E+F+ +S +++ F ++ C+ I + + +
Sbjct: 10 HGIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWF---TAVWCGPCKTIERPMEKIAYEF 66
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
P V F KVD + + I V +PTF I ++G+ L +I
Sbjct: 67 PTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVI 107
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 13/74 (17%), Positives = 23/74 (31%)
Query: 66 EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125
+ + ++ +N R T + A+ A+ DP Y+ A + L
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 126 YFRLGQVENARHHL 139
G AR
Sbjct: 63 LQGQGDRAGARQAW 76
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-13
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G F AL A+ P + TL G A E +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
Query: 115 YN--RAHQRLASLYFRLGQVENARHH 138
+ + L RL + + HH
Sbjct: 86 RGDQQVVKELQVFLRRLAREDALEHH 111
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354
L + N +L +++ ++ ++ AL P Y+ A
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 355 SNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
+ + G + A + +E L + + QV L++
Sbjct: 62 TLQGQGDRAGARQAWESGL--AAAQSRGDQQVVKELQVFLRR 101
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-15
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 399 EFVNNMKMSGEVEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYP 456
EF + + + E+ E+ ++ + + +V F C+ I+P L +Y
Sbjct: 4 EFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD 63
Query: 457 YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVDV++ A+ + +PTF KNGEK+ +++
Sbjct: 64 -AIFVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVV 102
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-15
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 408 GEVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV 465
VEE+ S +F+ + + + +VHF + +C +++ + L P V F K++
Sbjct: 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEA 71
Query: 466 EESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
E +++ + +VPTF +KN +K+ +
Sbjct: 72 EGVPEVSEKYEISSVPTFLFFKNSQKIDRLD 102
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVHFFKV 463
V+ ++S +F + IS + +V F +E C+ I+PF Y + F KV
Sbjct: 7 HHMVKIVTSQAEFDSIISQNELVIVDF---FAEWCGPCKRIAPFYEECSKTYTKMVFIKV 63
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
DV+E + + E + ++PTFK+YKNG + ++
Sbjct: 64 DVDEVSEVTEKENITSMPTFKVYKNGSSVDTLL 96
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-15
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 408 GEVEEISSLE----KFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
G+V +++ F+ S + +V F + C+ I+P L ++P V F KV
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
DV+E A+A+ V +PTF K+G+ + + +
Sbjct: 64 DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTV 96
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 5e-15
Identities = 14/93 (15%), Positives = 32/93 (34%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
E++ Y+ G + +A ++ + ++ + A A+G+ A+
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+D R A + G++ A L
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 8e-13
Identities = 18/112 (16%), Positives = 34/112 (30%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
N + S Y +A + D Y+S + C MG ++ +I + +
Sbjct: 27 LAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
+ A + G +EA + + E E L+
Sbjct: 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-09
Identities = 12/74 (16%), Positives = 21/74 (28%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
G +S + + A G +A + LD +R
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 122 LASLYFRLGQVENA 135
L + +GQ + A
Sbjct: 61 LGACRQAMGQYDLA 74
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 15/82 (18%), Positives = 24/82 (29%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G G + A+ Y M + + A L G L EA S A L
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 115 YNRAHQRLASLYFRLGQVENAR 136
+ + L ++ +
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-05
Identities = 8/78 (10%), Positives = 22/78 (28%)
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ S + A + G +E++ + ++ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 353 AVSNEKLGRWSEAVRDYE 370
+ +G++ A+ Y
Sbjct: 62 GACRQAMGQYDLAIHSYS 79
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-15
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 405 KMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVHFF 461
V + + +F +AI+ + +V F + C+ I+P + +YP F+
Sbjct: 3 HHHHMVTQFKTASEFDSAIAQDKLVVVDF---YATWCGPCKMIAPMIEKFSEQYPQADFY 59
Query: 462 KVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
K+DV+E +A+ V +PT ++KNG+++ +++
Sbjct: 60 KLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVV 94
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-15
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 406 MSGEVEEISSLEKFKAAIS----SPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYV 458
G V + ++F A ++ + V ++ F ++ C I+P ++P
Sbjct: 12 EEGVVIACHNKDEFDAQMTKAKEAGKVVIIDF---TASWCGPCRFIAPVFAEYAKKFPGA 68
Query: 459 HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVDV+E +A+ V +PTF K+G + +++
Sbjct: 69 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVV 106
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 47/342 (13%), Positives = 100/342 (29%), Gaps = 55/342 (16%)
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLT-EAVSDCEEAVRLDPGYNRAH 119
+ + L+ ++ + + A + L + EA +AV+L+P A
Sbjct: 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 120 QRLASLYFRLGQVENARHHLCFP---GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTV 176
+L +Y++ G V +A CF H + L L + L +
Sbjct: 141 NQLGEVYWKKGDVTSAH--TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 177 LRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236
+R+ A+ + V + L +L
Sbjct: 199 VRQAKLAVQMDVLD--------GRSWYIL-----------------------GNAYLSLY 227
Query: 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE 296
N + A+S+ +A +D + N R Y E
Sbjct: 228 FNTGQNPKIS--QQALSAYAQAEKVDRKASSNPDLHLN---------RATLHKYEESYGE 276
Query: 297 ACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356
A + + D + + +E + +P +++L ++
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQSML-GSLRP 332
Query: 357 EKLGRWSEAVRDYEALRR---ELPGDNEVAESLHNAQVALKK 395
LG + + ++ EL + + +++ V L K
Sbjct: 333 AHLGPCGDGRYQSASGQKMTLELKPLSTLQPGVNSGTVVLGK 374
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-12
Identities = 48/340 (14%), Positives = 92/340 (27%), Gaps = 66/340 (19%)
Query: 54 AGNEMYRKGNFVEALKLYDKAISMSPE--NAAYRSNR------------AATLTALGRLT 99
G +M R + + + + Y +
Sbjct: 26 GGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEME 85
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ-VENARHHLCFPGHHPDPNELLKLQ--S 156
+ + EE + +A A L ++ +KL+
Sbjct: 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLL---------SKAVKLEPEL 136
Query: 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216
E G+ + +A C + A L +N+ + LS
Sbjct: 137 VEAWNQL-------GEVYWKKGDVTSAHT-----------CFSGA-LTHCKNKVSLQNLS 177
Query: 217 NMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276
L L + ++V A+ A +D + +L N
Sbjct: 178 M--------------VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223
Query: 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS---YNSILYCNRAICWSKMGLWENSIE 333
+ + G N + +A SAY + K D N L+ NRA + ++E
Sbjct: 224 LSL-YFNTGQNP---KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279
Query: 334 DCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373
+ A + P + + R E L R + + +
Sbjct: 280 GFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 17/88 (19%), Positives = 26/88 (29%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
G + A +K + N NRA EA+ +
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A LDP + QR L L ++ +
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSL 311
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 292 RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-LWENSIEDCNVALRIQPNYTKALL 350
+ E L + + + + + A++++P +A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 351 RRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGE 409
+ K G + A + AL + SL N + L++ + + + S
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALT-----HCKNKVSLQNLSMVLRQ--LQTDSGDEHSRH 194
Query: 410 VEEISSLEKFKAAIS 424
V + S+ + K A+
Sbjct: 195 VMD--SVRQAKLAVQ 207
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 7e-07
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 16/151 (10%)
Query: 284 RGNNLFSSRRYS-EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
+G L + YS EA + +K + + + K G ++ + AL
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167
Query: 343 PNY--------TKALLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAESLHNAQVAL 393
N L+ +E ++VR A++ D S + A
Sbjct: 168 KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAY 223
Query: 394 KKSRGEFVNNMKMSGEVEEISSLEKFKAAIS 424
N K+S + + + +
Sbjct: 224 LSLYFNTGQNPKISQQALS--AYAQAEKVDR 252
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 407 SGEVEEISSLE----KFKAAISSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVH 459
G+V ++E + + A S + +V F ++ C I+PF L + P V
Sbjct: 15 EGQVIACHTVETWNEQLQKANESKTLVVVDF---TASWCGPCRFIAPFFADLAKKLPNVL 71
Query: 460 FFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVD +E ++A ++ +PTF K G+ L +++
Sbjct: 72 FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVV 108
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-14
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
E + N AL L+++ + P+ + L R +A+ + + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 115 YNRAH--QRLASLYFRLGQVENARHH 138
L + +E+ HH
Sbjct: 74 EGTQKDLSELQDAKLKAEGLEHHHHH 99
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
PE+ R A + A++ EE V DP Y + L LY RL + ++A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ A K ++ + P+Y E+L R +A+ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 371 -ALRRELPGDNEVAESLHNAQVALKK 395
+ E+ + + L Q A K
Sbjct: 66 QGI--EVAREEGTQKDLSELQDAKLK 89
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G G +A +A+++ S A ++GRL EA++ +A+ P
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIR-SALAELYLSMGRLDEALAQYAKALEQAPK 183
Query: 115 YNRAHQRLASLYFRLGQVENA 135
R AS G+ E A
Sbjct: 184 DLDLRVRYASALLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-14
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G ++Y G + AL L+++A+ +P++ A T LG + A+ + + V P
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 115 YNRAHQRLASLYFRLGQVENARHH 138
Y + L+ Y L + R
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRER 95
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
++A + KG +AL + A ++P A R LG +A + ++
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ L+ LA LY +G+++ A
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 1e-09
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
RG +A ++ + L + I A + MG + ++ AL P
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPEI-RSALAELYLSMGRLDEALAQYAKALEQAP 182
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+R A + G+ EA R
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAA 209
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L++ RY A + + LK + + A K+GL ++E+ + P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 344 NYTKA-----------LLRRAVSNEKLGRWSEAVRDYE-ALR 373
Y + G +A+ + A R
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 14/59 (23%), Positives = 20/59 (33%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
G EAL Y KA+ +P++ R A+ L G+ EA
Sbjct: 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALR 373
+ +G ++ ++ AL+ P +AL A + KLG + A+ + + +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 374 RELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAIS 424
R P A + + + G +E+ +L K A
Sbjct: 68 RT-PRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQ--ALSVLKDAER 112
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 247 RFENAVSSAEKAGLLD------YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSA 300
A+ + + Y ++ + R + +A S
Sbjct: 54 LVNPALENGKTLVARTPRYLGGYMV--LSEAYVALY-----RQAEDRERGKGYLEQALSV 106
Query: 301 YGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360
+ + + + L+ R + ++ +G + + AL ++ + A +G
Sbjct: 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMG 165
Query: 361 RWSEAVRDYE 370
R EA+ Y
Sbjct: 166 RLDEALAQYA 175
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 5e-06
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
L ALGR A++ E A++ +P A LA +LG V A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA 58
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 22/107 (20%), Positives = 33/107 (30%)
Query: 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATL 92
NN + + +N + E G M + N EA ++ PE + T
Sbjct: 2 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ 61
Query: 93 TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
+ A+ A LDP H LA + A L
Sbjct: 62 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-09
Identities = 12/88 (13%), Positives = 28/88 (31%)
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
G ++ +EA A+ + + + + + ++ +I N A +
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDYE 370
P AVS+ + A+
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLR 109
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-07
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G A+ + A + P++ A + A + T A++ + P
Sbjct: 58 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Query: 115 Y 115
Y
Sbjct: 118 Y 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
A + E + E L G + + A A
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSL------------GLTQAENEKDGLAIIALNHARM 79
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345
D + ++ A+ + ++ L QP Y
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 32 INNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAAT 91
+++ G++ +A + + KAI + E+A N A
Sbjct: 12 SGLVPRGSHMASMTGGQ-----QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANL 66
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
L+++ L A++ ++A+ LD A+ ++Y + A
Sbjct: 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 3e-14
Identities = 18/81 (22%), Positives = 27/81 (33%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + + AL +A+ ++ + R L G L EA+S DPG
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 115 YNRAHQRLASLYFRLGQVENA 135
+ A Y E A
Sbjct: 192 HADAFYNAGVTYAYKENREKA 212
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 17/81 (20%), Positives = 26/81 (32%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
N + AL YDKA+ + A EA E+A+R
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 115 YNRAHQRLASLYFRLGQVENA 135
L ++ +L Q + A
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLA 144
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 18/81 (22%), Positives = 30/81 (37%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
GN K + EA +++KA+ EN L L + A+ + AV L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 115 YNRAHQRLASLYFRLGQVENA 135
A + G ++ A
Sbjct: 158 DTEARFQFGMCLANEGMLDEA 178
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 14/77 (18%), Positives = 25/77 (32%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + +G EAL + P +A N T +A+ ++A+ + P
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 115 YNRAHQRLASLYFRLGQ 131
+ A L
Sbjct: 226 HMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 6e-12
Identities = 15/87 (17%), Positives = 28/87 (32%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
N L S A + Y + L+ DS + Y + +++ + + ALR
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
KL + A+ +
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQ 149
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 8e-12
Identities = 15/87 (17%), Positives = 32/87 (36%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+ Y +A A+ + ++ + ++I Y N A S + E ++ + AL +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ A + EA +E
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFE 115
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 16/87 (18%), Positives = 31/87 (35%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN Y EA + + L+ N L+ K+ + ++ A+ +
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
N T+A + + G EA+ +
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFA 183
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 9/87 (10%), Positives = 26/87 (29%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L + A ++ + ++ +C + G+ + ++ P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ A V+ +A+ +
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLD 217
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 1e-08
Identities = 15/78 (19%), Positives = 32/78 (41%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L + EA S + + D ++ + N + ++ E ++E + A+ IQP
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 344 NYTKALLRRAVSNEKLGR 361
++ AL + +
Sbjct: 225 DHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 1e-07
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 66 EALKLYDKAISMSPENAAYRSNRAATL----TALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
+ + + + P + S + G +A +A+ + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 122 LASLYFRLGQVENA 135
A+L + ++E A
Sbjct: 63 FANLLSSVNELERA 76
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352
+ + + S+ + S+ G +E + E A+ +
Sbjct: 7 HHHHSSGLVP---RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 353 AVSNEKLGRWSEAVRDYE 370
A + A+ Y+
Sbjct: 64 ANLLSSVNELERALAFYD 81
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 3e-14
Identities = 10/81 (12%), Positives = 26/81 (32%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + G + +A+ L ++ + + G + E ++ P
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 115 YNRAHQRLASLYFRLGQVENA 135
+ L Y ++ + + A
Sbjct: 75 NVKVATVLGLTYVQVQKYDLA 95
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 4e-14
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + + A+ L K +P N R L LGR EA+ + A+ L P
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 115 YNRAHQRLASLYFRLGQVENA 135
+ H+ +A Y ++G+ E A
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 1e-13
Identities = 14/81 (17%), Positives = 30/81 (37%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + G +L +++++ +P+N + T + + AV + +P
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 115 YNRAHQRLASLYFRLGQVENA 135
RL LG+ + A
Sbjct: 109 NFNVRFRLGVALDNLGRFDEA 129
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 3e-11
Identities = 15/87 (17%), Positives = 35/87 (40%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+G + + RYS+A + D+++ + + I + K G + E +L P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ K ++ ++ ++ AV
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLI 100
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G + G F EA+ + A+ + P A + +GR EA+ ++A LD G
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 115 YNRAHQRLASLY 126
+ LA +
Sbjct: 177 ASVE---LALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 4e-10
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 12/124 (9%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
R+ AV E+ D +V+ V + G + L
Sbjct: 23 RYSQAVMLLEQVYDADAFDVD---VALH---------LGIAYVKTGAVDRGTELLERSLA 70
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
N + + + ++ ++ ++ P R V+ + LGR+ EA+
Sbjct: 71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
Query: 367 RDYE 370
++
Sbjct: 131 DSFK 134
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 2e-09
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G ++Y A + + + N + + +G ++ +I+ +AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
N K A S E++GR EA+ ++
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFK 168
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 7e-08
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367
D + Y ++ I +K G + ++ L ++ K G
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 368 DYE 370
E
Sbjct: 64 LLE 66
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 6e-07
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 75 ISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134
+ Y ++ + GR ++AV E+ D L Y + G V+
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 135 A 135
Sbjct: 61 G 61
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 5e-06
Identities = 12/66 (18%), Positives = 24/66 (36%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G L + R+ EA ++ L ++ A + +MG E ++ A +
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Query: 344 NYTKAL 349
+ L
Sbjct: 176 GASVEL 181
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 393 LKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC 452
++ S +++ G V+ ISS ++FK V ++ F C+ I P +
Sbjct: 1 MRGSH-HHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKIS 59
Query: 453 VRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
V F+KVDV+E IA+ G+R +PTF +KNG+K+ ++
Sbjct: 60 DTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVV 105
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 5e-14
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 9/109 (8%)
Query: 393 LKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLV--HFKEASSE---KCEEISPF 447
S G + E+ + SS S + F + C +I +
Sbjct: 5 HHHSSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKF---GAVWCKPCNKIKEY 61
Query: 448 VNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
Y YV +DV+ + ++ +PTF+ Y N ++
Sbjct: 62 FKNQL-NYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLV 109
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 5e-14
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 30/186 (16%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
N +GN EA++LY KA+ + PE AA SN A+ L G+L EA+ +EA+R+ P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 115 YNRAHQRLASLYFRLGQVENARHHLC--------FPGHHPDPNELLK--------LQSFE 158
+ A+ + + + V+ A F H + + K + S+
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 159 K-----------HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ 207
+ N + + DW ++I D QL + + H
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD---QLEKNRLPSVHPHHS 192
Query: 208 NEDADS 213
S
Sbjct: 193 MLYPLS 198
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 9e-12
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
E AV KA + S L + L + EA Y E ++
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNL------------ASVLQQQGKLQEALMHYKEAIR 71
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ Y N +M + +++ A++I P + A A ++ G EA+
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 131
Query: 367 RDYEALRRELPGDNEV 382
Y + P +
Sbjct: 132 ASYRTALKLKPDFPDA 147
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 4e-10
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 76 SMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
P +A +N A G + EAV +A+ + P + AH LAS+ + G+++ A
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 136 RHHLCFPGHHPDPNELLKL--QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQ 193
H E +++ + + N +++ D + L+ AI I +
Sbjct: 63 LMHY---------KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 194 LVACKAEAHLKLHQNEDADSCL 215
A H +A +
Sbjct: 114 HSN-LASIHKDSGNIPEAIASY 134
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 6e-09
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 3/114 (2%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
N EA Y + L+ + + N A + G + ++ A+RI P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397
+ A + +++ A++ Y + P A++ N K S
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSG 125
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 7e-08
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 12/135 (8%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
+ + A+ ++A + + + S + GN L + A Y ++
Sbjct: 58 KLQEALMHYKEAIRISPTFADAYSNM------------GNTLKEMQDVQGALQCYTRAIQ 105
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ + + N A G +I AL+++P++ A A + + W++
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 367 RDYEALRRELPGDNE 381
+ L + E
Sbjct: 166 ERMKKLVSIVADQLE 180
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 4e-05
Identities = 15/72 (20%), Positives = 24/72 (33%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+ S EA ++Y LK YCN A C + W + E + I
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Query: 344 NYTKALLRRAVS 355
+ + +V
Sbjct: 177 DQLEKNRLPSVH 188
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 6e-05
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 22/131 (16%)
Query: 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373
N A + G E ++ AL + P + A A ++ G+ EA+ Y+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 374 RELP----------------GDNEVAESLHNAQVALKKSRGEFVNNM----KMSGEVEEI 413
R P D + A + + + + + +N+ K SG + E
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE- 129
Query: 414 SSLEKFKAAIS 424
++ ++ A+
Sbjct: 130 -AIASYRTALK 139
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 7e-14
Identities = 14/81 (17%), Positives = 31/81 (38%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ N+ +A Y + + +P N A G+ +A+ E+ ++L+
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 115 YNRAHQRLASLYFRLGQVENA 135
A+ L + Y+ + E
Sbjct: 121 NLAANIFLGNYYYLTAEQEKK 141
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-12
Identities = 12/107 (11%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA----------------AYRSNR 88
+E+ + + G +A+ + + I+++ + +
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 89 AATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
A +A +E ++ P + A + GQ ++A
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDP 113
+G +AL++Y+K + + +N A + + + + +
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 114 GYNRAHQRLASLYFRLGQVENARHHL 139
A R + E AR+ L
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSL 180
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 5/141 (3%)
Query: 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNL----FS 290
L K+ I + AVS + L+ E+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350
+R Y +A Y E L+ N A G ++++ L+++ + A +
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126
Query: 351 RRAVS-NEKLGRWSEAVRDYE 370
+ + +
Sbjct: 127 FLGNYYYLTAEQEKKKLETDY 147
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 5e-10
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 55 GNEMYRKGN-FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y + L+ K +S + R + R +A + ++ + P
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Query: 114 GYNRAHQRLASLYFRLGQVE 133
A + L + +V
Sbjct: 189 -STEAQKTLDKILRIEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 34/207 (16%)
Query: 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD---------------SSPQLVACKA 199
QS ++ L + + + + G + IA+ +D S +L A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAG 259
A+ K + A + + P+ V L ++ + ++A+ EK
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRG--QEKDALRMYEKIL 115
Query: 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSS-RRYSEACSAYGEGLKYDSYNSILYCNR 318
L+ N+ GN + + + + + L +
Sbjct: 116 QLEADNLAA---NIF---------LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNY 345
+ +E + + P+
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-14
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVHFFKVD 464
+ +++ + I + + +V F ++ C I+P V L P V F KVD
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDF---FAQWCGPCRNIAPKVEALAKEIPEVEFAKVD 57
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
V+++ A V +PTF K+G+++
Sbjct: 58 VDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFS 89
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 8e-14
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 408 GEVEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
GE+ EIS ++ + ++H +S C ++ +++L ++P F K
Sbjct: 10 GELREISG-NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAI 68
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
V + +PT +YKNG+ + I +
Sbjct: 69 VNS---CIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGIN 106
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 408 GEVEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD 464
GE+ EIS ++ + ++H +S C ++ ++LL ++P F K
Sbjct: 3 GELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAI 61
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
V + +PT +YKNG+ + I +
Sbjct: 62 VNS---CIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGIN 99
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 12/85 (14%), Positives = 23/85 (27%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ G+ + +++ P + + R EA ++A P
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 115 YNRAHQRLASLYFRLGQVENARHHL 139
+ L GQ E A
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAY 114
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 14/78 (17%), Positives = 25/78 (32%)
Query: 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
+ L A+ P++ A +G T + + L PG+ A R
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 122 LASLYFRLGQVENARHHL 139
L + + + A L
Sbjct: 63 LGRVRWTQQRHAEAAVLL 80
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 19/94 (20%), Positives = 29/94 (30%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
E V R G + + EA L +A +PE+ L G+ A +
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLC 140
A +L P +L + RL
Sbjct: 116 RAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 16/144 (11%), Positives = 30/144 (20%), Gaps = 12/144 (8%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
+ A + +L + + A GL
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLML------------ADAELGMGDTTAGEMAVQRGLA 51
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ + A P + L + E G+ A
Sbjct: 52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA 111
Query: 367 RDYEALRRELPGDNEVAESLHNAQ 390
Y + LP + + L N +
Sbjct: 112 AAYTRAHQLLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 11/98 (11%), Positives = 24/98 (24%), Gaps = 3/98 (3%)
Query: 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350
+ +++ + + + A MG L + P + +A+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388
R R +EA + P
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEH---PGIALW 96
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 12/141 (8%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
+ ++ L + E + L G ++ +R++EA +
Sbjct: 38 DTTAGEMAVQRGLALHPGHPEAVARL------------GRVRWTQQRHAEAAVLLQQASD 85
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366
+ + G E + A ++ P + +L W
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
Query: 367 RDYEALRRELPGDNEVAESLH 387
+R + E
Sbjct: 146 VLSAQVRAAVAQGVGAVEPFA 166
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-13
Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 11/145 (7%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G + + A A+ +S + N ++ + + + ++
Sbjct: 12 EGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNN 403
+ A +R + + ++ A++D + +L G+ + + K E + N
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID--YKILGLQFKLFACEVLYN 126
Query: 404 M----KMSGEVEEISSLEKFKAAIS 424
+ E ++ + E+ A S
Sbjct: 127 IAFMYAKKEEWKK--AEEQLALATS 149
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G K ++ AL + ++ N T L +TEA ++ D
Sbjct: 13 GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69
Query: 115 YNRAHQRLASLYFRLGQVENA 135
A+ + LY++ + + A
Sbjct: 70 LAVAYFQRGMLYYQTEKYDLA 90
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 3e-09
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR-LDP 113
G N EA K + ++I+ A R + A+ D +EA+ L
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 114 GYNRAHQRL---------------ASLYFRLGQVENARHHL 139
++ L A +Y + + + A L
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 16/89 (17%)
Query: 284 RGNNLFSSRRYSEACSAYGE----------------GLKYDSYNSILYCNRAICWSKMGL 327
RG + + +Y A E GL++ + + N A ++K
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 328 WENSIEDCNVALRIQPNYTKALLRRAVSN 356
W+ + E +A ++ + + +A+
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMEC 165
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 9e-06
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 16/85 (18%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA--AYRS--------------NRAATLTALGRL 98
G Y+ + A+K +A+ N Y+ N A
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 99 TEAVSDCEEAVRLDPGYNRAHQRLA 123
+A A + + A
Sbjct: 138 KKAEEQLALATSMKSEPRHSKIDKA 162
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+I N + + W+ +++ + +Q +++ L +EA + +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFT 61
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 2e-13
Identities = 9/89 (10%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
G + + Y+E+ + + ++ D S + + + +E +++ N + +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 344 NYT--KALLRRAVSNEKLGRWSEAVRDYE 370
+ +A + + E
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAE 100
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 3e-12
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G Y GN+ E++ L++KAI + PE + Y + L L R EAV + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72
Query: 115 YNR--AHQRLASLYFRLGQVENA 135
A + E
Sbjct: 73 EYNKDVWAAKADALRYIEGKEVE 95
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 2e-11
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
N Y + G + SI+ A+++ P +K L + + L R+ EAV Y
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 371 -ALRRELPGDNEVAESLHNAQVALKK 395
+ + D + AL+
Sbjct: 65 YVI--NVIEDEYNKDVWAAKADALRY 88
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 5e-10
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSP--ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112
G +Y + EA+ Y+ I++ N + +A L + E +L+
Sbjct: 47 GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106
Query: 113 PGYN 116
++
Sbjct: 107 HHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 6e-08
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 284 RGNNLFSSRRYSEACSAYGE--GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+G L++ RY EA Y + D YN ++ +A + E E ++
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 342 QPNY 345
+ ++
Sbjct: 106 EHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 5e-07
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 77 MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
M +N G TE++ E+A++LDP ++ + L + E A
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 408 GEVEEISSLEKFKAAISSPGVS----LVHFKEASSE---KCEEISPFVNLLCVRYP-YVH 459
G V I S + A ++ +V F ++ C+ I+P L Y V
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDF---TATWCGPCKMIAPLFETLSNDYAGKVI 58
Query: 460 FFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
F KVDV+ A+A++ G+ +PTF +YK+G K +++
Sbjct: 59 FLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLV 95
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 5e-13
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y++G++ EA++ Y KA+ + P +A A+ N G EA+ ++A+ LDP
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 114 GYNRAHQRLASLYFRLGQVENA 135
A L + Y++ G + A
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEA 122
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 64.7 bits (159), Expect = 7e-13
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
GN Y++G++ EA++ Y KA+ + P +A N G EA+ ++A+ LDP
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 115 YNRAHQRLASLYFRLGQVENA 135
A L + Y++ G + A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEA 88
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-09
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D ++ + N + K G ++ +IE AL + P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+A + K G + EA+ Y+
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 55.1 bits (134), Expect = 2e-09
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y++G++ EA++ Y KA+ + P +A A+ N G EA+ ++A+ LDP
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 53.5 bits (130), Expect = 6e-09
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D ++ + N + K G ++ +IE AL + P
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
+A + K G + EA+ Y+
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 43.1 bits (103), Expect = 3e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ N + K G ++ +IE AL + P +A + K G + EA+ Y+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 40.4 bits (96), Expect = 2e-04
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 83 AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
A+ N G EA+ ++A+ LDP A L + Y++ G + A
Sbjct: 3 AW-YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 54
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 4e-04
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D ++ + N + K G ++ +IE AL + P
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Query: 344 N 344
Sbjct: 135 R 135
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 410 VEEISSLEKFKAAI---SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVD 464
V EI+ E+F + + +++F + +E C+ + + V F +D
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSID 61
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+E+ I++ + VP F I G LKE+
Sbjct: 62 ADENSEISELFEISAVPYFIIIHKGTILKELS 93
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 1e-12
Identities = 36/300 (12%), Positives = 84/300 (28%), Gaps = 37/300 (12%)
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRL-ASLYFRLGQVENARHHLCFPGHHPDPNELLK 153
+G + +++ + P + Y + + P P+ +
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIK-PSSAPELQAVRM 70
Query: 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD-SSPQLVACKAEAHLKLHQNEDAD 212
+ ++ E D ++ VD ++ + A + + A
Sbjct: 71 FAEYLASH---------SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121
Query: 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA--S 270
L E + + + R + A +K + +
Sbjct: 122 RTLHQGDSLEC-----------MAMTVQILLKLDRLDLARKELKKM-------QDQDEDA 163
Query: 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330
LT + A + + +A + E S +L +A C G WE
Sbjct: 164 TLTQL-----ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218
Query: 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+ AL + + L+ V ++ LG+ E Y + ++ + + +
Sbjct: 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKE 278
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 2e-09
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
+A ++ + + +AA A GR A +EA+ D G+
Sbjct: 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237
Query: 120 QRLASLYFRLGQVENARHHL--CFPGHHPDPNELLKLQSFEKHLNRCAE 166
L L LG+ + H + + ++ E +R
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVL 286
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 5e-07
Identities = 32/239 (13%), Positives = 62/239 (25%), Gaps = 12/239 (5%)
Query: 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229
IG ++ + E + + A+L + + E +
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF 71
Query: 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289
++L + ++EL E + S I N +R +G++L
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 290 SSR----------RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL--WENSIEDCNV 337
R A + D ++ A G +++
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396
L +A + GRW A + + G E +L L K
Sbjct: 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP 250
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG--RLTEAVSDCEEAVRLDPGYNR 117
+ A K K + + A A G +L +A +E
Sbjct: 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 201
Query: 118 AHQRLASLYFRLGQVENARHHL 139
A+ + G+ E A L
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVL 223
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 1e-12
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y++G++ EA++ Y KA+ + P NA A+ N G EA+ ++A+ LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 114 GYNRAHQRLASLYFRLGQVENA 135
A L + Y++ G + A
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEA 96
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 62.4 bits (153), Expect = 4e-12
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y++G++ EA++ Y KA+ + P NA A+ N G EA+ ++A+ LDP
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 114 GYNRAHQRLASLYFRLG 130
A Q L + + G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 54.3 bits (132), Expect = 3e-09
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D N+ + N + K G ++ +IE AL + P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYE 370
N +A + K G + EA+ Y+
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 43.5 bits (104), Expect = 1e-05
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D N+ + N + K G ++ +IE AL + P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 344 NYTKA 348
N +A
Sbjct: 109 NNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 3e-05
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 76 SMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133
+M P N A+ N G EA+ ++A+ LDP A L + Y++ G +
Sbjct: 2 AMDPGNSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 134 NA 135
A
Sbjct: 61 EA 62
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 41.6 bits (99), Expect = 8e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ N + K G ++ +IE AL + PN +A + K G + EA+ Y+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-12
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 410 VEEISSLEKFKAAISSPG--VSLVHFKEASSE---KCEEISPFVNLLCVRYP-YVHFFKV 463
V ++ ++ + ++ F + C+ ISP + L ++ V KV
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDF---FATWCGPCKMISPKLVELSTQFADNVVVLKV 58
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
DV+E IA + ++PTF KNG K++E
Sbjct: 59 DVDECEDIAMEYNISSMPTFVFLKNGVKVEEFA 91
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-12
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 406 MSGEVEEISSLEKFKAAI--SSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVHF 460
+ G+V E++ + F + + ++ ++ + ++P L Y V F
Sbjct: 3 IVGKVTEVNK-DTFWPIVKAAGDKPVVLDM---FTQWCGPSKAMAPKYEKLAEEYLDVIF 58
Query: 461 FKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
K+D +E+ +AK G+R VPTFKI K + E+
Sbjct: 59 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 95
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-12
Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMS--PENA-AYRSNRAATLTALGRLTEAVSDCEEAVRL 111
G +Y + + EA + +A + PE + + N + + +A E+++RL
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF-ENLGLVSLQMKKPAQAKEYFEKSLRL 170
Query: 112 DPGYNRAHQRLASLYFRLGQVENARHHL 139
+ +A L ++ + AR +
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYY 198
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR--LD 112
+ A + Y KA++ NA +N L R EA EA + L
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 113 PGYNRAHQRLASLYFRLGQVENARHHL 139
P +R + L + ++ + A+ +
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQAKEYF 164
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 8e-11
Identities = 15/81 (18%), Positives = 27/81 (33%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G ++GN +A KA+ + P +A + A A + +A+ D
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103
Query: 115 YNRAHQRLASLYFRLGQVENA 135
R + + E A
Sbjct: 104 NARVLNNYGGFLYEQKRYEEA 124
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 9/83 (10%), Positives = 23/83 (27%)
Query: 54 AGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
G + +A + ++K++ ++ + A L A + +
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206
Query: 114 GYNRAHQRLASLYFRLGQVENAR 136
R+ L + A
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAA 229
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 12/73 (16%), Positives = 21/73 (28%)
Query: 66 EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125
+ K E G +A +A+ +DP AH LA +
Sbjct: 21 MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80
Query: 126 YFRLGQVENARHH 138
+ + + A
Sbjct: 81 FQTEMEPKLADEE 93
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 4/119 (3%)
Query: 279 VRART-RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337
A G +A + L+ D ++ + A+ + + + E+
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK 96
Query: 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
AL + L + R+ EA + A + E + N + +
Sbjct: 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS--QDTLYPERSRVFENLGLVSLQ 153
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 41/326 (12%), Positives = 80/326 (24%), Gaps = 89/326 (27%)
Query: 77 MSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENAR 136
M + + + + + + A+ +L Y + G E A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQNPL---KTDKGRDEARDAYIQLGLGYLQRGNTEQA- 56
Query: 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196
K A+ I P
Sbjct: 57 -----------------KVPLRK-----------------------ALEI----DPSS-- 70
Query: 197 CKAEAHL-------KLHQNEDADSC----LSNMPKFE--HYSPPSQVKFLVWLLKLMFNI 243
A+AH + + AD L++ + + L
Sbjct: 71 --ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN-------YGGFLY----- 116
Query: 244 SEL-RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYG 302
E R+E A +A D E + V N G ++ ++A +
Sbjct: 117 -EQKRYEEAYQRLLEA-SQDTLYPERSRVFEN---------LGLVSLQMKKPAQAKEYFE 165
Query: 303 EGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRW 362
+ L+ + + A K + + + ++ + ++LL +
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225
Query: 363 SEAVRDYEALRRELPGDNEVAESLHN 388
A L+R PG E E
Sbjct: 226 DTAASYGLQLKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 14/69 (20%), Positives = 23/69 (33%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ +Y++ +V A + YD +NA A S + RL PG
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241
Query: 115 YNRAHQRLA 123
+ A
Sbjct: 242 SLEYQEFQA 250
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 18/142 (12%)
Query: 286 NNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345
++ R + K Y + + + G E + AL I P+
Sbjct: 11 SSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS 70
Query: 346 TKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM 404
A AV + A +Y AL + + A L+N L +
Sbjct: 71 ADAHAALAVVFQTEMEPKLADEEYRKALASD-SRN---ARVLNNYGGFLYE--------- 117
Query: 405 KMSGEVEEISSLEKFKAAISSP 426
EE + ++ A
Sbjct: 118 --QKRYEE--AYQRLLEASQDT 135
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 60 RKGNFVEALKLYDKAISMS--PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117
R E++ +DKA++ P N+ G+ A + + ++ P +
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Query: 118 AHQRLASLYFRLGQVENARHHL 139
A + LA GQ+ +A ++
Sbjct: 149 AFKELARTKMLAGQLGDADYYF 170
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-11
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
E R ++ +A + A+ P+N RA L +A +A+ + P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 115 YNRAHQRLAS-LYFRLGQVENA 135
+ L RL + +
Sbjct: 75 SAEINNNYGWFLCGRLNRPAES 96
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 5/115 (4%)
Query: 284 RGNNLFS-SRRYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMGLWENSIEDCNVALR 340
G L R +E+ + + + L +Y I N+ IC +K G + + +L
Sbjct: 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141
Query: 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
QP + A A + G+ +A ++ + + A+ L K
Sbjct: 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIAKA 194
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 9e-09
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
+ Y +A ++ + LK D N + + RA + + + + + E AL I+P
Sbjct: 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 344 NYTKALLRRAVS-NEKLGRWSEAVRDYE-ALRRELPGDNEVAESLHNAQVALKK 395
+ + +L R +E++ ++ AL P + N + K
Sbjct: 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKAL--ADPTYPTPYIANLNKGICSAK 125
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 54 AGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
G ++G F A ++++ P+ A T G+L +A ++
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
Query: 114 GYNRAHQRLA-SLYFRLGQVENAR 136
L + LG + A
Sbjct: 179 VLQADDLLLGWKIAKALGNAQAAY 202
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137
+ + + ++ A +A + E+A++ DP A A +Y L + A+
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 138 H 138
Sbjct: 64 S 64
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 17/114 (14%)
Query: 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-AL 372
+ A+ + + + + AL+ P A L RA + L +A + AL
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 373 RRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSP 426
+ P AE +N L E S+ F A++ P
Sbjct: 70 SIK-PDS---AEINNNYGWFLCGRLNRP----------AE--SMAYFDKALADP 107
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 18/136 (13%), Positives = 31/136 (22%), Gaps = 11/136 (8%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
R +++ +KA L D + N +G ++ A + L
Sbjct: 92 RPAESMAYFDKA-LADPTYPTPYIANLN---------KGICSAKQGQFGLAEAYLKRSLA 141
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE-KLGRWSEA 365
+ A G ++ L LG A
Sbjct: 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201
Query: 366 VRDYEALRRELPGDNE 381
L+ P E
Sbjct: 202 YEYEAQLQANFPYSEE 217
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 62 GNFVEALKLYDKAISM---SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118
G +A+ Y+KAI+ + A +T LG +A + V+ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 119 HQRLASLYFRLGQVENARHHL 139
A + + LG+ E L
Sbjct: 64 RVFYAMVLYNLGRYEQGVELL 84
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G+ G + +A + + P + A R A L LGR + V + +
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 115 ------YNRA 118
Y +A
Sbjct: 94 DETIQSYKQA 103
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 293 RYSEACSAYGEGLKYDSYNSIL---YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349
++A Y + + L Y + +G + + ++ PN+
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 350 LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384
+ A+ LGR+ + V + E D +
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 15/109 (13%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
AV EKA ++A G+ + Y +A + G+K
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLG---------LGSTFRTLGEYRKAEAVLANGVK 55
Query: 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------YTKAL 349
+ L A+ +G +E +E + + Y +A+
Sbjct: 56 QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 95 LGRLTEAVSDCEEAVRL---DPGYNRAHQRLASLYFRLGQVENARHHL 139
LG +AV E+A+ + L S + LG+ A L
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVL 50
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 59.3 bits (145), Expect = 2e-11
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113
GN Y++G++ EA++ Y KA+ + P NA A+ N G EA+ ++A+ LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 114 GYNRAHQRLASLYFRLG 130
A Q L + + G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
GN + Y EA Y + L+ D N+ + N + K G ++ +IE AL + P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 344 NYTKA 348
N +A
Sbjct: 75 NNAEA 79
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
+ N + K G ++ +IE AL + PN +A + K G + EA+ Y+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 41.2 bits (98), Expect = 5e-05
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 76 SMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133
+M P N A+ N G EA+ ++A+ LDP A L + Y++ G +
Sbjct: 2 AMDPGNSAEAW-YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 134 NA 135
A
Sbjct: 61 EA 62
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-11
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENA--AYRSNRAATLTALGRLTEAVSDCEEAVRLD 112
E+ +G+ AL+ ++ + P AY LG +A+++ + A+ L+
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVGKDEAY-YLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 113 PGYN--RAHQRLASLYFRLG-----QVENARHH 138
P +A + + + Q+E+ HH
Sbjct: 66 PDSPALQARKMVMDILNFYNKDMYNQLEHHHHH 98
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNS-ILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
L + A A E L+ + Y + K+G W+ ++ + A+ +
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 343 PNYTKA 348
P+
Sbjct: 66 PDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 87 NRAATLTALGRLTEAVSDCEEAVRLDPG-YNRAHQRLASLYFRLGQVENA 135
L G + A+ EE ++ +P + A+ + + Y +LG + A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKA 54
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 317 NRAICWSKMGLWENSIEDCNVALRIQP-NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRR 374
G EN+++ L+ +P +A + KLG W +A+ +Y+ A+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-- 62
Query: 375 ELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405
EL D+ ++ L + N ++
Sbjct: 63 ELNPDSPALQARKMVMDILNFYNKDMYNQLE 93
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 4e-11
Identities = 56/336 (16%), Positives = 95/336 (28%), Gaps = 73/336 (21%)
Query: 55 GNEMYRKGNFV---EALKLYDKAISMSPENAAYRSNRAATLTAL----GRLTEAVSDCEE 107
YR N+ A+ +AI ++P+N + A L + E EE
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE 238
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL--QSFEKHLNR-C 164
A+ PG + A Y R + + A L + L+ + H C
Sbjct: 239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL---------KKALEYIPNNAYLHCQIGC 289
Query: 165 AESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY 224
K+ + G +L+ A AHLK
Sbjct: 290 CYRAKVFQVMNLRENGMY----GKRKLLELI-GHAVAHLK--------KADEANDNLFRV 336
Query: 225 SPPSQVKFLVWLLKLMFNISEL-----RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279
++ L ++E A +K + + V +
Sbjct: 337 ---------------CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR----- 376
Query: 280 RARTRGN-NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338
GN L+ + +A + EG+K + + KM I +
Sbjct: 377 ----YGNFQLYQMKCEDKAIHHFIEGVKINQKSRE--------KEKMKDKLQKIA--KMR 422
Query: 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALR 373
L ++AL A E + +A D E L
Sbjct: 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 48/377 (12%), Positives = 98/377 (25%), Gaps = 78/377 (20%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPE---------NAAYRSNRAATLTALGRLTEAVSDC 105
+ KG AL+ KA + + + N A +GRL++
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 106 EEAVRLDPGYNRAHQ-RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRC 164
++ + ++ ++ L G LK R
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEG------------------WTRLKCG--GNQNERA 157
Query: 165 AES-RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223
K A+ +P+ + A A +L + + + + +
Sbjct: 158 KVCFEK-------------ALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203
Query: 224 YSPP-SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282
+P +K L+ L E+A + VL +
Sbjct: 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD---VLRSA------- 253
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG---------------- 326
+A + L+Y N+ L+C C+
Sbjct: 254 --AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Query: 327 ---LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEV 382
L +++ A N + A + ++ EA ++ +EL +
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371
Query: 383 AESLHNAQVALKKSRGE 399
L L + + E
Sbjct: 372 LLHLRYGNFQLYQMKCE 388
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 55/323 (17%), Positives = 94/323 (29%), Gaps = 41/323 (12%)
Query: 94 ALGRLTEAVSDCEEAVR-----LDPGYN-RAHQRLASLYFRLGQVENARHHL-----CFP 142
L ++ D E+ V + + LA L GQ E A L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS-------PQLV 195
H D E+ L ++ N +G V D + S P+L
Sbjct: 83 QEHADQAEIRSLVTW---GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139
Query: 196 ACKAEAHLKLHQN--EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL-RFENAV 252
+ LK N E A C + + P +F L + + +NA+
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAI 195
Query: 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312
+A L+ N + +L A E E L+ +
Sbjct: 196 DPLRQAIRLNPDNQYLKVLL--------ALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247
Query: 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
+ + A + + + +IE AL PN + +R+
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307
Query: 373 RRELPGDNEVAESLHNAQVALKK 395
+ ++ E + +A LKK
Sbjct: 308 GKR-----KLLELIGHAVAHLKK 325
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 6e-09
Identities = 35/292 (11%), Positives = 67/292 (22%), Gaps = 51/292 (17%)
Query: 61 KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120
E KL ++A+ +P + A +A+ ++A+ P H
Sbjct: 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285
Query: 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLK--LQSFEKHLNRCAESRKIGDWKTVLR 178
++ Y EL+ + +K
Sbjct: 286 QIGCCYRAKVFQVMNLREN-GMYGKRKLLELIGHAVAHLKK------------------- 325
Query: 179 ETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLK 238
A + A H Q E+A+ F P + L
Sbjct: 326 ----ADEANDNLFRVCSI-LASLHALADQYEEAEYYFQKE--FSKELTPVAKQLLHLRYG 378
Query: 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298
+ A+ + ++ + E + ++ + + R N SEA
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN-----GADSEA- 432
Query: 299 SAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350
A + + ED L A
Sbjct: 433 ----------------LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 19/101 (18%)
Query: 54 AGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATL-------------------TA 94
A RK +A++L KA+ P NA
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENA 135
L + AV+ ++A + R LASL+ Q E A
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 43/396 (10%), Positives = 104/396 (26%), Gaps = 81/396 (20%)
Query: 59 YRKGNFVEALKLYDKAISMSPENA-AYRSNRAATLTALG---------RLTEAVSDCEEA 108
Y G + DK + + + YR G + A E+A
Sbjct: 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA 164
Query: 109 VRLDPGYNRAHQRLASLYFRL---GQVENARHHLCF-----PGHHPDPNEL-LKLQSFEK 159
+ P LA +RL +NA L P + L LKL +
Sbjct: 165 LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224
Query: 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219
E K+ + E A+ ++ A+ + + + + A L
Sbjct: 225 EGEEEGEGEKL------VEE---ALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKA- 273
Query: 220 KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279
L+ + N + L + K +
Sbjct: 274 -----------------LEYIPNNAYLHCQIGCCYRAKVFQVMNLR-------------- 302
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
A + + + + + A + +E +
Sbjct: 303 -ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 340 RIQPNYTKA----LLRRAVSNEKLGRWSEAVRDY-EALRRELPGDNEVAESLHNA----- 389
+ L ++ +A+ + E + ++ + E + +
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV--KINQKSREKEKMKDKLQKIA 419
Query: 390 --QVALKKSRGEFVNNM----KMSGEVEE-ISSLEK 418
+++ + E ++ + +++ ++++ E+
Sbjct: 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
+ A+ KA + S A+ + EA ++
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363
Query: 112 DPGYNRA---HQRLASL-YFRLGQVENARHH 138
+ H R + +++ + A HH
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-11
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 406 MSGEVEEISSLEKFKAAI--SSPGVSLVHFKEASSE---KCEEISPFVNLLCVRYPYVHF 460
+ G+V E++ + F + + ++ ++ C+ ++P L Y V F
Sbjct: 16 IVGKVTEVNK-DTFWPIVKAAGDKPVVLDM---FTQWCGPCKAMAPKYEKLAEEYLDVIF 71
Query: 461 FKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
K+D +E+ +AK G+R VPTFKI K + E+
Sbjct: 72 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 108
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 9e-11
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 406 MSGEVEEIS-SLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
MS + + + E I +PG+ LV F C+ + + + V F KV
Sbjct: 1 MSDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKV 60
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMIN 497
DV+++ A + GV ++P K + ++
Sbjct: 61 DVDKNGNAADAYGVSSIPALFFVKKEGNEIKTLD 94
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 3e-10
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 8/141 (5%)
Query: 56 NEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115
+G +AL+L +AI SP++A+ RS+ L G A ++++L P Y
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 116 NRAHQRLASLYFRLGQVENARHHLCFPGHHP----DPNELLKLQSFEKHLNRCAESRKIG 171
AS L + AR + EL K + ++
Sbjct: 65 ----LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120
Query: 172 DWKTVLRETDAAIAIGVDSSP 192
+ + E + +
Sbjct: 121 ELALQIEELRQEKGFLANDTS 141
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 9/127 (7%)
Query: 87 NRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHP 146
+ + G+L +A+ EA++ P L G E A L
Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL- 60
Query: 147 DPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206
P L +HL + A++R K + A +G + +L +L +
Sbjct: 61 FPEYLPGASQL-RHLVKAAQAR-----KDFAQGAATAKVLG--ENEELTKSLVSFNLSMV 112
Query: 207 QNEDADS 213
+
Sbjct: 113 SQDYEQV 119
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 18/162 (11%)
Query: 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303
S+ E + + + + N E ++L G YS + AY +
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNSLLAYRQ 69
Query: 304 GLKYDSYNSILYCNRA---ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360
L+ N+ LY A + + + + AL + N AL+ A
Sbjct: 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQA 129
Query: 361 RWSEAVRDYEALRRELPGDNEVA---ESLHNAQVALKKSRGE 399
+++A+ ++ + ES++ A++ ++S E
Sbjct: 130 NYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLE 171
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 9/85 (10%), Positives = 30/85 (35%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
+ + + ++ + N L+ I +P+N+ + + ++
Sbjct: 9 EYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQ 131
+A++L + LA++ +
Sbjct: 69 QALQLRGENAELYAALATVLYYQAS 93
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 55 GNEMYRKGNFV---EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
+Y + + + + DKA+++ A+ +A+ ++ + L
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 112 DPGYNRAHQRLASLYF-----RLGQVENARHH 138
+ Q + S+ R +E+ HH
Sbjct: 145 NSPRINRTQLVESINMAKLLQRRSDLEHHHHH 176
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV 465
MS + +I++ E A ++V F + C+ + ++ R P V VD
Sbjct: 1 MS-AIRDITT-EAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDS 58
Query: 466 EESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
E + K G VPT ++G+ K
Sbjct: 59 EARPELMKELGFERVPTLVFIRDGKVAKVFS 89
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 5e-09
Identities = 74/556 (13%), Positives = 162/556 (29%), Gaps = 157/556 (28%)
Query: 27 SCSSNINNNNNNVKTSNV--AVDAEEVKRAGNEMYRKGNFV---------------EALK 69
+ N+N NV ++++A E+ R V +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 70 LYDKAISMSPENAAY-----RSNRA-ATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123
+ + + N L L +L ++DP + +
Sbjct: 173 --SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------L---YQIDPNWTSRSDHSS 221
Query: 124 SLYFRLGQVENA-RHHLCFPGHHPDPNELLKL---------QSFEKHLNRCAESRKIGDW 173
++ R+ ++ R L P N LL L +F C
Sbjct: 222 NIKLRIHSIQAELRRLLK---SKPYENCLLVLLNVQNAKAWNAFN---LSC--------- 266
Query: 174 KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD---SCLSNMPKFEHYSPPSQV 230
K +L + + ++ + L +E L + + P +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQD--LPREVL 323
Query: 231 K---FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN 287
+ ++ ++N + +V + T ++ + N
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDN------------WKHVNCDKLTTIIESSL------NV 365
Query: 288 LFSS--RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345
L + R+ + S + + +L ++ +W + I+ V + + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPT--ILL----SL------IWFDVIKSD-VMVVVNKLH 412
Query: 346 TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNMK 405
+L+ + + E+ ++ EL E +LH
Sbjct: 413 KYSLVEK--------QPKESTISIPSIYLELKVKLENEYALHR----------------S 448
Query: 406 MSGEVEEISSLEKFKA-AISSPGVS------LV-HFKEASSEKCEEISPFVNLLCVRYPY 457
+ V+ + + F + + P + + H K E E ++ F + +
Sbjct: 449 I---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMV------F 497
Query: 458 VHF-F---KVDVEESLAIAKSEGVRTVPTFKIYK-----NGEKLKEMINPSHQFLED-SA 507
+ F F K+ + + A + T+ K YK N K + ++N FL
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 508 NLAPSPVYKLPLVTLA 523
NL S L+ +A
Sbjct: 558 NLICSK--YTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 42/352 (11%), Positives = 93/352 (26%), Gaps = 97/352 (27%)
Query: 241 FNISELRFENA--VSSAEKAGL--LDYSNVE--IASVLTN--VKMVVRARTRGNN----- 287
F E +++ +S E A + D +V+ S+L+ + ++ ++ +
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 288 -LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346
S++ E L+ + Y + L + + Y
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRIN-YK----------F----LMSPIKTEQRQPSMMTRMYI 113
Query: 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM-- 404
+ ++L ++ Y R + L A + L+ ++ ++ +
Sbjct: 114 EQR-------DRLYNDNQVFAKYNVSRLQP------YLKLRQALLELRPAKNVLIDGVLG 160
Query: 405 ------------------KMSGEV------------EEISSLEKFKAAISSPGVSLVHFK 434
KM ++ + L+K I S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 435 EASSEKCEEISPFVNLLCVRYPYVHFFKV--DVEES------------LAIAKSEGVRTV 480
+ I + L PY + V +V+ + L + + V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--- 277
Query: 481 PTFKIYKNGEKLKEMINPSHQFLEDS-----ANLAPSPVYKLPLVTLACSPF 527
T + + + S D LP L +P
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 7e-05
Identities = 61/418 (14%), Positives = 106/418 (25%), Gaps = 141/418 (33%)
Query: 208 NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM------------------FNISELRFE 249
E+ D + S L W L F +S ++ E
Sbjct: 48 KEEIDHII-MSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 250 NAVSSAEKAGLLDYSNVEIASVLTNVKM-VVRART----RGNNLFSSRRYS--------- 295
S ++ + K V R + R L R
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLG 160
Query: 296 --------EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC-----NVALRIQ 342
+ C +Y K D I W + NS E + +I
Sbjct: 161 SGKTWVALDVCLSYKVQCKMD---------FKIFWLNLKN-CNSPETVLEMLQKLLYQID 210
Query: 343 PNYT----------------KALLRRAVSNEKLGR--------WSEAVRDYEALR-REL- 376
PN+T +A LRR + ++ + + L + L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 377 -PGDNEVAESLHNA---QVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVSLVH 432
+V + L A ++L + L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTL----------TPDEVKSLLLKYLDCRPQDL-- 318
Query: 433 FKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492
E +P L + +A + +G+ T +K + N +KL
Sbjct: 319 ----PREVLT-TNPRR--LSI---------------IAESIRDGLATWDNWK-HVNCDKL 355
Query: 493 KEMINPSHQFLEDS------ANLA--PSPVYKLPLVTLACSPFGWFSTAVVTGESEHI 542
+I S LE + L+ P +P + L+ WF V+ + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLI---WF--DVIKSDVMVV 407
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 60/376 (15%), Positives = 101/376 (26%), Gaps = 107/376 (28%)
Query: 39 VKTSNVAV----DAEEVKRAGNEMYRKGNFV--EALKLYDKAISMSPEN----------- 81
+ T V A + + E L K + P++
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 82 -----AAYRSNRAATL-----TALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ 131
A + AT +LT + L+P R ++ RL
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRK------MFDRLS- 379
Query: 132 VENARHHLCFPGHHPDPNELLKL-------QSFEKHLNRCAESRKI-GDWKTVLRETDAA 183
FP P LL L +N+ + + K
Sbjct: 380 --------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST------ 425
Query: 184 IAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS--NMPK---FEHYSPPSQVKFLVWLLK 238
I + S + K E LH+ S + N+PK + PP ++ +
Sbjct: 426 --ISIPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQY--FYSH 476
Query: 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298
+ ++ + ++ LD+ +E + + A N +
Sbjct: 477 IGHHLKNIEHPERMTLFRMV-FLDFRFLE--QKIRHDSTAWNASGSILNTLQQLK----- 528
Query: 299 SAYGEGLKYDSY---NSILYCNRAICWSKMGLWENSIED----CNVALRIQPNYTKALLR 351
Y Y N Y R + N+I D L YT LLR
Sbjct: 529 -------FYKPYICDNDPKY-ERLV---------NAILDFLPKIEENLICSK-YTD-LLR 569
Query: 352 RAVSNEKLGRWSEAVR 367
A+ E + EA +
Sbjct: 570 IALMAEDEAIFEEAHK 585
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 9e-09
Identities = 52/366 (14%), Positives = 103/366 (28%), Gaps = 99/366 (27%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMS------PENAAYRSNRAATLTALGRLTEAVSDCEEA 108
GN + ++ +AL+ + ++++ A N TL LG EA+ C+
Sbjct: 54 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Query: 109 VRL------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLK--LQSFEKH 160
+ + G RA L ++Y G+ + + L+ + +E++
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173
Query: 161 LNRCAESRKIGDWKTVLRETDAAIA---IGVDSSPQLVACKAEAHLKLHQNEDADSCLSN 217
L+ +GD A +G H L DA
Sbjct: 174 LSL---VTALGD------RAAQGRAFGNLGN------------THYLLGNFRDAVIA--- 209
Query: 218 MPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277
E + A++ G +N+
Sbjct: 210 ------------------------------HEQRLLIAKEFG----DKAAERRAYSNL-- 233
Query: 278 VVRARTRGNNLFSSRRYSEACSAYGEGLK-----YDSYN-SILYCNRAICWSKMGLWENS 331
GN + A Y + L D + + ++ + +E +
Sbjct: 234 -------GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286
Query: 332 IEDCNVALRI------QPNYTKALLRRAVSNEKLGRWSEAVRDYE---ALRRELPGDNEV 382
I+ L I + +A + LG +A+ E + RE+ +
Sbjct: 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346
Query: 383 AESLHN 388
+ N
Sbjct: 347 LTARLN 352
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 47/369 (12%), Positives = 101/369 (27%), Gaps = 93/369 (25%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVS 103
E+ G + + G+ + ++ A+ + E+ +A S L +A+
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 104 DCEEAVRL------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSF 157
+ L G +A L + LG + A +
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA------------------IVCC 110
Query: 158 EKHLNRCAESRKIGDWKTVLRETDAAIA---IGVDSSPQLVACKAEAHLKLHQNEDADSC 214
++HL SR++ D + A A +G +
Sbjct: 111 QRHL---DISRELND------KVGEARALYNLG-------------------------NV 136
Query: 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274
K P V ++ + +E +S G N
Sbjct: 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG----DRAAQGRAFGN 192
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-YDSYN-----SILYCNRAICWSKMGLW 328
+ GN + + +A A+ + L + Y N + +G +
Sbjct: 193 L---------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243
Query: 329 ENSIEDCNVALRI------QPNYTKALLRRAVSNEKLGRWSEAVRDYE---ALRRELPGD 379
E + E L + + ++ + L + +A+ + A+ +EL
Sbjct: 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303
Query: 380 NEVAESLHN 388
+ +
Sbjct: 304 IGEGRACWS 312
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 42/382 (10%), Positives = 98/382 (25%), Gaps = 122/382 (31%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
E+ G + G+ + + AI E+ +A + LG + D +
Sbjct: 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTED---LRTLSAIYSQLGNAYFYLGDYNK 104
Query: 108 AVRL-------------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154
A++ G ++ L + +G+ + A
Sbjct: 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC---------------- 148
Query: 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIA---IGVDSSPQLVACKAEAHLKLHQNEDA 211
E+HL +R++GD A +G + ++
Sbjct: 149 --CERHL---TLARQLGD------RLSEGRALYNLGN------------VYHAKGKHLGQ 185
Query: 212 DSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-----YSNV 266
+ + AV ++ L
Sbjct: 186 RNPGKFGDDVKE-----------------------ALTRAVEFYQEN--LKLMRDLGDRG 220
Query: 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-----------DSYNSILY 315
N+ GN + + A + E L+ + +++
Sbjct: 221 AQGRACGNL---------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL-- 269
Query: 316 CNRAICWSKMGLWENSIEDCNVALRI------QPNYTKALLRRAVSNEKLGRWSEAVRDY 369
+G +E++ E L + + ++ + L ++ A+ +
Sbjct: 270 ---GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326
Query: 370 E---ALRRELPGDNEVAESLHN 388
A+ +EL A + +
Sbjct: 327 NRHLAIAQELGDRIGEARACWS 348
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 46/369 (12%), Positives = 100/369 (27%), Gaps = 93/369 (25%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVS 103
E+ G + + G+ + ++ A+ + E+ +A S L +A+
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 104 DCEEAVRL------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSF 157
+ L G +A L + LG + A +
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA------------------IVCC 106
Query: 158 EKHLNRCAESRKIGDWKTVLRETDAAIA---IGVDSSPQLVACKAEAHLKLHQNEDADSC 214
++HL SR++ D + A A +G +
Sbjct: 107 QRHL---DISRELND------KVGEARALYNLG-------------------------NV 132
Query: 215 LSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274
K P ++ + +E +S G N
Sbjct: 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG----DRAAQGRAFGN 188
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLK-YDSYN-----SILYCNRAICWSKMGLW 328
+ GN + + +A A+ + L + Y N + +G +
Sbjct: 189 L---------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239
Query: 329 ENSIEDCNVALRI------QPNYTKALLRRAVSNEKLGRWSEAVRDYE---ALRRELPGD 379
E + E L + + ++ + L + +A+ + A+ +EL
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299
Query: 380 NEVAESLHN 388
+ +
Sbjct: 300 IGEGRACWS 308
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 54/357 (15%), Positives = 101/357 (28%), Gaps = 100/357 (28%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMS------PENAAYRSNRAATLTALGRLTEAVSDCEEA 108
GN + ++ +AL+ + ++++ A N TL LG EA+ C+
Sbjct: 50 GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Query: 109 VRLD------PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLK--LQSFEKH 160
+ + G RA L ++Y G+ D L+ + +E++
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Query: 161 LNRCAESRKIGDWKTVLRETDAAIA---IGVDSSPQLVACKAEAHLKLHQNEDADSCLSN 217
L+ +GD A +G H L DA
Sbjct: 170 LSL---VTALGD------RAAQGRAFGNLGN------------THYLLGNFRDAVIA--- 205
Query: 218 MPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277
E + A++ G +N+
Sbjct: 206 ------------------------------HEQRLLIAKEFG----DKAAERRAYSNL-- 229
Query: 278 VVRARTRGNNLFSSRRYSEACSAYGEGLK-----YDSYN-SILYCNRAICWSKMGLWENS 331
GN + A Y + L D + + ++ + +E +
Sbjct: 230 -------GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282
Query: 332 IEDCNVALRI------QPNYTKALLRRAVSNEKLGRWSEAVRDYE---ALRRELPGD 379
I+ L I + +A + LG +A+ E + RE+ GD
Sbjct: 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV-GD 338
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 14/90 (15%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 410 VEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVE 466
+ +++S ++ AI S V ++ F C ++ ++ + VDV+
Sbjct: 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD 64
Query: 467 ESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
++ + + +P+ + NG+ +K
Sbjct: 65 QTAVYTQYFDISYIPSTVFFFNGQHMKVDY 94
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-07
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAY------------GEGLKYDSYNSILYCNRA 319
L V A + + Y EA + E + +++ + A
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64
Query: 320 ICWSKMGLWENSIEDCNVALRIQPN-----------YTKALLRRAVSNEKLGRWSEAVRD 368
+ + ++ ++ + AL + A+ RA++ + LGR +EA+ +
Sbjct: 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124
Query: 369 YE 370
++
Sbjct: 125 FK 126
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 1e-06
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 12/94 (12%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE------------NAAYRSNRAATLTA 94
A G + EA +A+ +S +A + A L
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128
L EA+ ++A+ +Q L+
Sbjct: 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 399 EFVNNMKMSGEVEEIS-----SLEKFKAAISSPGVSLVHFKEASSEKCEEISP----FVN 449
V + + E F ++ + LV F C++++P
Sbjct: 115 AKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAK 174
Query: 450 LLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491
L R P + KVD +AK V PT KI++ G
Sbjct: 175 ELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRP 216
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 5e-07
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 405 KMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKV 463
K ++ E F I + + LV C P + +Y F ++
Sbjct: 1 KKEDVTLVLTE-ENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRL 59
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+V+E+ IA V +PT I+ NG+ + ++
Sbjct: 60 NVDENQKIADKYSVLNIPTTLIFVNGQLVDSLV 92
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 7e-07
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
KG E+ + + I + Y G EA A L PG
Sbjct: 284 AVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEMKGMNREAADAYLTAFNLRPG 342
Query: 115 YNRAH 119
N +
Sbjct: 343 ANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTAL--------GRLTEAVSDCEEAV 109
+ A +L + + SPE R+ +A +L ++ + V
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268
Query: 110 RLD--PGYNRAHQRLASLYFRLGQVENARHHL 139
L + +Q A G+ + + +
Sbjct: 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 66 EALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123
D +++ N + +A + G+ E+ + L+ + + L
Sbjct: 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLG 317
Query: 124 SLYFRLGQVENA 135
+Y G A
Sbjct: 318 KVYEMKGMNREA 329
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 19/144 (13%), Positives = 39/144 (27%), Gaps = 3/144 (2%)
Query: 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE 296
+ + + A + + V +V ++
Sbjct: 204 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ--HPLDEKQLAALN 261
Query: 297 ACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356
L + SI+Y +A+ G + S + N + ++ ++ +
Sbjct: 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVY 320
Query: 357 EKLGRWSEAVRDYEALRRELPGDN 380
E G EA Y PG N
Sbjct: 321 EMKGMNREAADAYLTAFNLRPGAN 344
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-07
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG 476
+ F + ++S +++V F C ++P + L YP V F K++ +E+ IA G
Sbjct: 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYG 66
Query: 477 VRTVPTFKIYKNGEKLKEMI 496
V ++PT +K+GE + E+I
Sbjct: 67 VMSLPTVIFFKDGEPVDEII 86
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 8e-07
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 34/129 (26%)
Query: 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEA--- 101
A E++ + +E+ ++G +AL + + +A L + A
Sbjct: 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL 62
Query: 102 -------------------------------VSDCEEAVRLDPGYNRAHQRLASLYFRLG 130
+ E+ + +P LA Y ++G
Sbjct: 63 LATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVG 122
Query: 131 QVENARHHL 139
+ E A L
Sbjct: 123 RDEEALELL 131
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-05
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 4/122 (3%)
Query: 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARH 137
SP+ + + L G +A++ + A Q E A+
Sbjct: 4 SPDEQLL--KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 138 HL-CFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196
L P + D L + + + AES ++ + L + + + Q
Sbjct: 62 LLATIPLEYQDN-SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120
Query: 197 CK 198
Sbjct: 121 VG 122
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 8e-07
Identities = 38/275 (13%), Positives = 86/275 (31%), Gaps = 36/275 (13%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRS------NRAATLTALGRLTEAVSDCEEA 108
G ++ KG +L L + M+ ++ + ++ L A G L A E+A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 109 VRL--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160
+L P + + A L + +++ A + +
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179
Query: 161 LNRCAESR-KIGDWKTVLRETDAAIAIG---VDSSPQLVACKAEAHLKLHQNEDADSCLS 216
L +C+ +R + + ++ L + + G D + A + L
Sbjct: 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239
Query: 217 NMPK---FEHYSPPSQVKFLVWLLKLMFNISE--LRFENAVSSAEKAGLLDYSNVEIASV 271
+ K ++ Q + + L+ + E +A L+ N
Sbjct: 240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-RN--- 295
Query: 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLK 306
+++ + + + R S+A + LK
Sbjct: 296 -----LLLLNQL----YWQAGRKSDAQRVLLDALK 321
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 49/321 (15%), Positives = 102/321 (31%), Gaps = 42/321 (13%)
Query: 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR-----AHQRLASLYFRLGQVENAR 136
A + + RA G EA + A+ P A L + G++ +
Sbjct: 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73
Query: 137 HHL-----CFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSS 191
+ H L L + ++ G +T + A + +
Sbjct: 74 ALMQQTEQMARQHDVWHYALWSLI----QQSEILFAQ--GFLQTAWETQEKAFQLINEQH 127
Query: 192 PQ-------LVACKAEAHLKLHQNEDADSCLSN-MPKFEHYSPPSQVKFLVWLLKLMFNI 243
+ LV +A+ + ++A++ + + Y P Q++ L L++ +
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS--L 185
Query: 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303
+ +NA S + L + + ++N VR + + A +
Sbjct: 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNA-NKVRVIY----WQMTGDKAAAANWLRH 240
Query: 304 GLKYDSYNSIL----YCNRAICWSKMGLWENSIEDCNVALRI------QPNYTKALLRRA 353
K + N+ + N A +G +E + + + LL
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300
Query: 354 VSNEKLGRWSEAVRDY-EALR 373
+ GR S+A R +AL+
Sbjct: 301 QLYWQAGRKSDAQRVLLDALK 321
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 9e-07
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 406 MSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVD 464
GEV ++ E + ++ F C +P V F KV+
Sbjct: 36 FDGEVINATA-ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVN 94
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
E A++ +R++PT +Y+NG+ + +
Sbjct: 95 TEAEPALSTRFRIRSIPTIMLYRNGKMIDMLN 126
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 12/89 (13%), Positives = 29/89 (32%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343
R + R S+ + L D+ N + +R + LW+N ++ + L+
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231
Query: 344 NYTKALLRRAVSNEKLGRWSEAVRDYEAL 372
+R +++ +
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREV 260
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 5/81 (6%), Positives = 22/81 (27%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ + + L+ ++ +N +R + + ++ ++ D
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232
Query: 115 YNRAHQRLASLYFRLGQVENA 135
N + + +
Sbjct: 233 NNSVWNQRYFVISNTTGYNDR 253
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 11/83 (13%), Positives = 24/83 (28%)
Query: 53 RAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112
R + + E + I P+N +R + L ++ + + + D
Sbjct: 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196
Query: 113 PGYNRAHQRLASLYFRLGQVENA 135
A Q + +N
Sbjct: 197 AKNYHAWQHRQWVIQEFKLWDNE 219
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL-WENSIEDCNVALRIQ 342
L R A + ++ ++ N ++ R + + + + Q
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDYE 370
P + R V E L S+ +
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIA 190
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRLDP 113
+ R A KL AI ++ N R L +L + L E ++ + P
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163
Query: 114 GYNRAHQRLASLYFRLGQVENA 135
+ L L
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQE 185
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-06
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE 466
VE S+++ + GV L+ + + + + L +P D+E
Sbjct: 21 PVEA-STVDDWIKR-VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78
Query: 467 ESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+S AI VR P ++ +G+ +
Sbjct: 79 QSEAIGDRFNVRRFPATLVFTDGKLRGALS 108
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 405 KMSGEVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFK 462
M+G ++ ++ + F+ + + LV F A C +I+P + + Y + K
Sbjct: 2 HMAGTLKHVTD-DSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVK 60
Query: 463 VDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
++++E+ A GV ++PT +Y+ GE K ++
Sbjct: 61 LNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV 94
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 59 YRKGNFVEALKLYDKAISMS-------PENAAYRSNRAATLTALGRLTEAVSDCEEAVRL 111
GN+ A + + + + +A A G L A + E+++
Sbjct: 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136
Query: 112 D------PGYNRAHQRLASLYFRLGQVENARHHL 139
A + L L + + A+ H
Sbjct: 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G+ A + Y+K++ + + A + A LG L + + EA +
Sbjct: 114 ATVALHFGDLAGARQEYEKSLVYA-QQADDQVAIACAFRGLGDLAQQEKNLLEAQQH--- 169
Query: 115 YNRA---------HQRLASLYFRLGQVENARHH 138
+ RA + + L RL +E+ HH
Sbjct: 170 WLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 9e-04
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 15/99 (15%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLT-------ALGRLTEAVSDCEE 107
G F EA + + + + + L G A E
Sbjct: 33 GYVYAFMDRFDEARASFQALQQQA-QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 108 AVRL-------DPGYNRAHQRLASLYFRLGQVENARHHL 139
L + +A++ G + AR
Sbjct: 92 ERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-05
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 54 AGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR----------LTEAVS 103
E R F + + + +P +A + L L + + EA++
Sbjct: 8 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 104 DCEEAVRLDPGYNRAHQRLASLYFRLGQV 132
EEA+ +DP + A + + Y +
Sbjct: 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFL 96
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-05
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGV 477
F ++ ++LV F C +SP + L + + KV+V+E +A GV
Sbjct: 43 FAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGV 102
Query: 478 RTVPTFKIYKNGEKLKEMI 496
R+VPT +++ G + +
Sbjct: 103 RSVPTLVLFRRGAPVATWV 121
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 6e-05
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 59 YRKGNFVEALKLYDKAISMS---------PENAAYRSNRAATLTALGRLTEAVSDCEEAV 109
++G + +A LY + ++ + +N + + + ++ E
Sbjct: 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
Query: 110 RLD------PGYNRAHQRLASLYFRLGQVENAR 136
P N + L +LY R G++E A
Sbjct: 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-05
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ + P+ Y F ++++ + A+ GV+ PTFK + +G + E +
Sbjct: 39 CKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQV 95
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 11/129 (8%)
Query: 399 EFVNNMKMSGEVEEI--SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY- 455
EF+ + + V + S+ + V +V F S + + P +
Sbjct: 535 EFIED-LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSANL------ 509
++ VD + + E V+ P + Y + + + D+ +L
Sbjct: 594 GLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLG 653
Query: 510 -APSPVYKL 517
P L
Sbjct: 654 FLPQASIDL 662
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 6/137 (4%)
Query: 364 EAVRDYEAL-----RRELPGDNEVAESLHNAQVALKKSRGEFVNNMKMSGEVEEISSLEK 418
+ R YE L R++ E + S + + +
Sbjct: 66 KINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERRE 125
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISP-FVNLLCVRYPYVHFFKVDVEESLAIAKSEGV 477
F AA++S + V+F S +++P + + V+ + + + +GV
Sbjct: 126 FDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGV 185
Query: 478 RTVPTFKIYKNGEKLKE 494
+ P+ I+++G +
Sbjct: 186 NSYPSLFIFRSGMAAVK 202
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-05
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 401 VNNMKMSGEVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YV 458
V S ++ ++ + F + + G LV F + I+P ++ + Y +
Sbjct: 15 VPRGSHSDKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKL 73
Query: 459 HFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
K++++++ A G+R +PT ++KNGE +
Sbjct: 74 TVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 111
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-05
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 17/107 (15%)
Query: 406 MSGEVEEISSLEKFKAA-ISSPGVSLVHF--------------KEASSEKCEEISPFVNL 450
MS ++ ++ + F + + G LV F + C+ I+P ++
Sbjct: 1 MSDKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDE 59
Query: 451 LCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+ Y + K++++++ A G+R +PT ++KNGE +
Sbjct: 60 IADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 106
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C +++P V K+D + A+A ++ +P F ++ G +L
Sbjct: 79 CRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA 135
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F + + LV F C I+P + + Y + K+DV+E+ A V
Sbjct: 11 FDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRV 70
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K+G+ ++ ++
Sbjct: 71 MSIPTVILFKDGQPVEVLV 89
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 405 KMSGEVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFK 462
MS V I+ +F++ + + LV+F + C+ +SP +NL Y + K
Sbjct: 4 AMSKGVITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVK 62
Query: 463 VDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
++++ + K V VP ++ K + L
Sbjct: 63 LEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTE 96
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ I+P ++ L Y + +K++ +E+ IA +R++PT +KNGE+ + +I
Sbjct: 33 CKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 89
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 1e-04
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGV 477
F+ AI G LV F A C ++P + + V K++V+E+ G+
Sbjct: 10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGI 69
Query: 478 RTVPTFKIYKNGEKLKEMI 496
++PT ++K G +K++I
Sbjct: 70 MSIPTLILFKGGRPVKQLI 88
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 15/93 (16%)
Query: 59 YRKGNFVEALKLYDKAISMS---------PENAAYRSNRAATLTALGRLTEAVSDCEEAV 109
++G F +A LY + ++ + EN + G+ + S E
Sbjct: 206 LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265
Query: 110 RLD------PGYNRAHQRLASLYFRLGQVENAR 136
P + L +LY R G+ E A
Sbjct: 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C++++P + L + Y F+ VDVEE + + ++ VP +K+GE +M
Sbjct: 37 CQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMA 93
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ I+P + L Y K+DV+E+ + A V ++PT ++K+G+ + +++
Sbjct: 34 CKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVV 90
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C I+P V+ + Y + K++ +ES +A G+R++PT ++K G+K + +I
Sbjct: 34 CRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETII 90
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 399 EFVNN-MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP- 456
F+ + + +S E + K V ++ F + C + +
Sbjct: 106 AFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTK 165
Query: 457 ----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPSHQFLED 505
+ V+ E A V VP I NGE E P FLE
Sbjct: 166 AGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEK 220
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDV 465
+ I+ +E + +++ FK + C E+ ++ + +++ +++
Sbjct: 10 NFQSINVVENLEE-AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEE 68
Query: 466 EESLAIAKSEGVRTVPTFKIY-KNGEKLKEMI 496
E+++ +A VPT K G K
Sbjct: 69 EKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQ 100
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 59 YRKGNFVEALKLYDKAISMSPENAAYRSNRAATL-------TALGRLTEAVSDCEEAVRL 111
Y ++ +A+ + + Y +L +A+ E A+ L
Sbjct: 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211
Query: 112 ------DPGYNRAHQRLASLYFRLGQVENARHHL 139
D + +A+ Y R G + A H
Sbjct: 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 16/121 (13%)
Query: 284 RGNNLFSSRRYSEACSAYGEGLKY------DSYNSILYCNRAICWSKMGLWENSIEDCNV 337
RG F + Y EA Y E K D + + A + M S+
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 338 ALRIQPNYTKALLRRAVSN-------EKLGRWSEAVRDYE---ALRRELPGDNEVAESLH 387
AL I N+ +R S + + +A+ E L ++ D +A SL
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226
Query: 388 N 388
N
Sbjct: 227 N 227
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-------- 455
+ G + I+ E+F+ + +++ + C P +
Sbjct: 12 VLEDGRLIYITP-EEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFI 68
Query: 456 PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI--NPSHQFLE 504
+ ++ + GV PT YK G + +++ P +E
Sbjct: 69 WGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVE 119
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ ++P ++ L Y + +KVD E+ +A + G+R++P+ K +
Sbjct: 53 CKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQ 109
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 4e-04
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C I+P + L Y V KV+V+E+ A G+R++PT ++KNG+ + ++
Sbjct: 34 CRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLV 90
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 397 RGEFVNNMKMSGEVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY 455
RG ++ S I F+ ++S +V F C+ + P + + +
Sbjct: 2 RGSHHHHHHGS-TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQ 60
Query: 456 P-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
V KVD+++ +A V VPT KNG+ + + +
Sbjct: 61 HGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFV 102
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 6e-04
Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ I P + + + V KV+++++ + VR++PT + ++G+ + + +
Sbjct: 35 CKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKV 91
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 402 NNMKMSGEVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVH 459
++ MS ++ ++ + F + + G LV F C+ I+P ++ + Y +
Sbjct: 6 HHHPMSDKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLT 64
Query: 460 FFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
K++++++ A G+R +PT ++KNGE +
Sbjct: 65 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 101
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCV--------RYPYVHF 460
V +++ + +K V + + E + F + V F
Sbjct: 14 RVINVNA-KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGF 72
Query: 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490
VD E+ A+AK G+ + ++K E
Sbjct: 73 GLVDSEKDAAVAKKLGLTEEDSIYVFKEDE 102
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 8e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
+ I+P + L + K+DV+E+ A GV ++PT + K+GE ++ +
Sbjct: 32 SKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSV 88
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 8e-04
Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 441 CEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
C+ ++P + L Y ++ +KV+V++ +A+ G++++PT + + +
Sbjct: 66 CKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNM 122
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 8e-04
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 34/130 (26%)
Query: 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEA-- 101
+ + E + ++ ++ N+ +AL L A +S +N A TL AL R +A
Sbjct: 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEA 172
Query: 102 --------------------------------VSDCEEAVRLDPGYNRAHQRLASLYFRL 129
+ ++ V +P +LA ++
Sbjct: 173 VLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV 232
Query: 130 GQVENARHHL 139
G+ E A L
Sbjct: 233 GRNEEALELL 242
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.98 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.97 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.96 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.96 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.95 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.95 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.94 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.93 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.91 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.9 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.9 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.9 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.89 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.89 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.89 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.88 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.86 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.86 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.85 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.85 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.83 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.83 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.81 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.8 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.8 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.8 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.8 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.8 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.8 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.8 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.79 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.79 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.79 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.78 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.78 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.78 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.78 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.78 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.77 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.77 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.77 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.77 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.77 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.77 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.77 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.77 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.77 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.77 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.77 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.76 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.76 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.76 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.76 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.76 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.76 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.76 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.76 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.76 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.76 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.76 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.76 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.76 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.75 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.75 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.75 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.75 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.75 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.75 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.74 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.74 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.74 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.74 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.74 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.74 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.73 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.73 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.73 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.73 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.72 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.72 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.71 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.71 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.71 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.71 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.71 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.7 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.7 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.7 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.7 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.69 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.69 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.69 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.69 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.68 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.68 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.68 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.67 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.67 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.66 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.66 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.64 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.63 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.43 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.62 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.61 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.61 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 99.4 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.6 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.6 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.58 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.58 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.58 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.58 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.57 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 99.57 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.57 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.56 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.56 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 99.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.55 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.54 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.54 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.52 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 99.52 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.51 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.51 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 99.5 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.5 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.49 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.49 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.49 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.49 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.48 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.47 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.47 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.46 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.45 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.45 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.45 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.44 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.44 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.44 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.44 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.43 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.43 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.43 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.42 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.42 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.42 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.42 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.4 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.4 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.39 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.38 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.38 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.38 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 99.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.38 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.37 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.37 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.36 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.36 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.34 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.33 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.33 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.32 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.32 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 99.32 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.31 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.31 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.3 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.29 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.29 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.27 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.27 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.26 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.26 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.25 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.25 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.25 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.24 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.23 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 99.23 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 99.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.22 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 99.21 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.2 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.2 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.2 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.2 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.2 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.2 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.2 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.19 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.19 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.19 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.16 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 99.15 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.15 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.11 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.1 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.08 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 98.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 99.04 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.04 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.04 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.02 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.02 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.01 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.98 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 98.97 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.97 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 98.97 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 98.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.96 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 98.94 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 98.94 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 98.94 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 98.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.91 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 98.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.89 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 98.89 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.89 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 98.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.87 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.87 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 98.86 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.86 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 98.82 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 98.82 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 98.81 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 98.79 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.78 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 98.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.76 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 98.76 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.76 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 98.76 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 98.75 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 98.74 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 98.74 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 98.73 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.71 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 98.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.7 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.65 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.65 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 98.62 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.62 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 98.62 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.61 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.6 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 98.59 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 98.58 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.58 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 98.57 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 98.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.54 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 98.52 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 98.5 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 98.48 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 98.46 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 98.42 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 98.42 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 98.4 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 98.37 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 98.37 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 98.35 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 98.35 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 98.35 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 98.34 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 98.33 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 98.33 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 98.32 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 98.32 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 98.29 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 98.28 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 98.28 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.27 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 98.27 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.27 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 98.24 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 98.24 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 98.23 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.22 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 98.18 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 98.18 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.17 | |
| 1wik_A | 109 | Thioredoxin-like protein 2; picot homology 2 domai | 98.16 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 98.15 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 98.15 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 98.14 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 98.14 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 98.13 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 98.13 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 98.13 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.12 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 98.11 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 98.08 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 98.05 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 98.05 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 98.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 98.0 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 97.97 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 97.96 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 97.96 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.96 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 97.91 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 97.9 | |
| 1un2_A | 197 | DSBA, thiol-disulfide interchange protein; disulfi | 97.86 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 97.85 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.83 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 97.8 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 97.75 | |
| 3l9s_A | 191 | Thiol:disulfide interchange protein; thioredoxin-f | 97.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.69 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 97.69 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 97.61 |
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=303.58 Aligned_cols=345 Identities=21% Similarity=0.264 Sum_probs=315.0
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCC-CC---ChH-HHhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 127 FRLGQVENARHHLCFPGH-HP---DPN-ELLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~---~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
...|++++|+..|+++++ .+ +.. .+..+ .....+...+..+...|++++|+..++++++..|.. +.++..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-AELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 999999999999999988 34 222 11111 123345566899999999999999999999999977 7889999
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.++...|++++|+..++++++..|.++.. +..+|.++...|++++|+..++++++..|++...+..+..+...
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDNTEA------FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCHHH------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 999999999999999999999999998654 44559999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh----HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.....+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77788899999999999999999999999999874 46679999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
++...|++++|+.+|+++++++|+++.++..+..+...+++.++
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 358 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=313.61 Aligned_cols=328 Identities=17% Similarity=0.124 Sum_probs=188.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
++.++..+|.++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++.
T Consensus 56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++..+|++++|+..|++++. .|+. ...+..++..+...|++++|+..|+++++.+|+. ...+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 206 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAY 206 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHH
Confidence 5555555555555555555555555443 2111 1234455555556666666666666666665554 4555
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..+|.++...|++++|+..+++++..+|++... +..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------ 274 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVV------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY------ 274 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------
Confidence 555666666666666666666666655555332 22335566666666666666666666666655543
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 275 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 275 ------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp ------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 23566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+...|++++|+..|+++++++|+++.++..++.+..
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 666666666666666666666666666655555433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.92 Aligned_cols=365 Identities=20% Similarity=0.244 Sum_probs=321.8
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD 112 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 112 (543)
....+...+..+|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH----HHhHH---HHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 009096 113 PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN----ELLKL---QSFEKHLNRCAESRKIGDWKTVLRETDAAI 184 (543)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 184 (543)
|++..++..+|.++..+|++++|+..|++++. .++.. .+..+ .....++..+..+...|++++|+..+++++
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 44332 22211 122346677888999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 185 ~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
+..|.. ..++..+|.++...|++++|+..|+++++.+|.+.. .+..+|.++...|++++|+..|++++..+|+
T Consensus 171 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 171 EVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999887 788999999999999999999999999999998854 4555599999999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh----hHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 265 NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS----ILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
+...+..+..+........+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999888777777777778889999999999999999999999999985 4789999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhhhhcc
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEFVNNM 404 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~~~~~ 404 (543)
.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+..+...+++....+++..
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~ 387 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999888887766655543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=311.79 Aligned_cols=338 Identities=16% Similarity=0.079 Sum_probs=313.2
Q ss_pred CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 31 NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 31 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
+.|...+...+..+|.++..+..+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++
T Consensus 16 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 95 (388)
T 1w3b_A 16 EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.+|++..++..+|.++...|++++|+..|+++++ .|+.. ..+..++..+...|++++|+..|+++++.+|+
T Consensus 96 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY--------CVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT--------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999887 43332 34677888999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
. ...+..+|.++...|++++|+..|+++++.+|++.. .+..+|.++...|++++|+..|++++..+|++..++
T Consensus 168 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 168 F-AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp C-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 7 788999999999999999999999999999999854 445559999999999999999999999999998775
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|+++.++
T Consensus 241 ------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 241 ------------GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp ------------HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
..+|.++...|++++|+..|+++++++|++..++..++.+....++
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999888877665544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=288.28 Aligned_cols=328 Identities=16% Similarity=0.151 Sum_probs=238.9
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 345566666666666666666666666666665 4556666666666666666666666666666666666666666666
Q ss_pred HHhCCHHHHHHHhcCCCC-CC-----------------------------------------------------------
Q 009096 127 FRLGQVENARHHLCFPGH-HP----------------------------------------------------------- 146 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~-~~----------------------------------------------------------- 146 (543)
..+|++++|+..|++++. .+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 666666666655554432 10
Q ss_pred --------------------------------------------------------------ChH-HHhHHHHHHHHHHH
Q 009096 147 --------------------------------------------------------------DPN-ELLKLQSFEKHLNR 163 (543)
Q Consensus 147 --------------------------------------------------------------~~~-~~~~~~~~~~~~~~ 163 (543)
++. ..........+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 000 00013445667788
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q 009096 164 CAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI 243 (543)
Q Consensus 164 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 243 (543)
+..+...|++++|+..+++++..+|. ..++..+|.++...|++++|+..+++++...|.+...+. .+|.++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~ 315 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY------HRGQMNF 315 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH------HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH------HHHHHHH
Confidence 99999999999999999999999988 888999999999999999999999999999999876444 4499999
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|++++...|++..++. .+|.++...|++++|+..|+++++..|+++.++..+|.++.
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYI------------QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT 383 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHH------------HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 999999999999999999999877653 35777777777777777777777777777777777777777
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTK------ALLRRAVSNEK---LGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
..|++++|+..|++++...|+++. +++.+|.++.. .|++++|+..|+++++++|+++.++..++.+....+
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 777777777777777777766644 77777777777 777777777777777777777777766666655554
Q ss_pred h
Q 009096 395 K 395 (543)
Q Consensus 395 ~ 395 (543)
+
T Consensus 464 ~ 464 (514)
T 2gw1_A 464 D 464 (514)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=288.00 Aligned_cols=331 Identities=17% Similarity=0.161 Sum_probs=269.4
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCC-CCChHHH----------------------------------------------------
Q 009096 125 LYFRLGQVENARHHLCFPGH-HPDPNEL---------------------------------------------------- 151 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~-~~~~~~~---------------------------------------------------- 151 (543)
++..+|++++|+..|+ ++. .++....
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999885 332 1111000
Q ss_pred ---------------------------------------------------------hHHHHHHHHHHHHHhhhhcCCHH
Q 009096 152 ---------------------------------------------------------LKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 152 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
........+..++..+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 00011234667778888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS 254 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 254 (543)
+|+..+++++..+|. ...+..+|.++...|++++|+..++++++.+|.++.. +..+|.++...|++++|+..
T Consensus 261 ~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 261 DAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT------YYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH------HHHHHHHHHhcCCHHHHHHH
Confidence 999999999999887 6788889999999999999999999999998887553 44448899999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHH
Q 009096 255 AEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED 334 (543)
Q Consensus 255 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 334 (543)
|++++..+|++..++. .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 333 ~~~a~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYI------------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HHHHHHHCTTCSHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999998887653 3688888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCCH------HHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 335 CNVALRIQPNYT------KALLRRAVSNEKL----------GRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 335 ~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
|+++++..|++. ..++.+|.++... |++++|+..|+++++.+|+++.++..++.+...+++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 888887766544 3355667777777 8888888888888888888888777777776666543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=263.59 Aligned_cols=294 Identities=13% Similarity=0.064 Sum_probs=259.1
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN 116 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (543)
....+...|.+++.++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 33455566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC-CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 117 RAHQRLASLYFRLG-QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 117 ~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
.++..+|.++...| ++++|+..| +++++.+|.. ..++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~ 128 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYL-----------------------------------------SKATTLEKTY-GPAW 128 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHH-----------------------------------------HHHHTTCTTC-THHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH-----------------------------------------HHHHHhCCcc-HHHH
Confidence 99999999999988 777777766 4555566665 5677
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
..+|.++...|++++|+..++++++..|.+...+.. +|.++...|++++|+..+++++..+|++..++
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------ 196 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY------IGLEYGLTNNSKLAERFFSQALSIAPEDPFVM------ 196 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH------HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHH------
Confidence 888999999999999999999999888887665444 49999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC---------CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD---------SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
..+|.++...|++++|+..|+++++.. |..+.++..+|.++...|++++|+..|+++++++|+++
T Consensus 197 ------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 197 ------HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 347999999999999999999999875 66788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.++..+|.++..+|++++|+.+|+++++++|+++.++..+..+.
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=285.80 Aligned_cols=335 Identities=12% Similarity=0.087 Sum_probs=292.9
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
.+....|+..+++++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445688889999999999999999999999999999999999999999999999999999999999999888877553
Q ss_pred --------------------------------------------------------------------------------
Q 009096 107 -------------------------------------------------------------------------------- 106 (543)
Q Consensus 107 -------------------------------------------------------------------------------- 106 (543)
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence
Q ss_pred -----------------------------HHHhcCCCChh-------HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 107 -----------------------------EAVRLDPGYNR-------AHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 107 -----------------------------~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
++++.+|+++. ++..+|.++...|++++|+..|++++. .+++
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~- 276 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP- 276 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc-
Confidence 33344566533 577888899999999999999999887 4442
Q ss_pred HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhH
Q 009096 150 ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229 (543)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 229 (543)
..+..++.++...|++++|+..++++++.+|.. +.++..+|.++...|++++|+..++++++..|.+...+
T Consensus 277 --------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 277 --------NSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp --------HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred --------hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 347788999999999999999999999999987 78899999999999999999999999999999987654
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 230 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
. .+|.++...|++++|+..++++++.+|++..++. .+|.++...|++++|+..|+++++..|
T Consensus 348 ~------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 I------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT------------FFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp H------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 4 4499999999999999999999999999988753 479999999999999999999999987
Q ss_pred CChhH------HhHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 310 YNSIL------YCNRAICWSKM----------GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 310 ~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
++... +..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 76544 45567889999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHH
Q 009096 374 RELPGDNEVAESLHNA 389 (543)
Q Consensus 374 ~~~p~~~~~~~~l~~~ 389 (543)
+++|++++....+...
T Consensus 490 ~~~~~~~~~~~~~~~~ 505 (537)
T 3fp2_A 490 ILARTMDEKLQATTFA 505 (537)
T ss_dssp HHC--CHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHhHH
Confidence 9999999987765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=280.56 Aligned_cols=335 Identities=17% Similarity=0.089 Sum_probs=295.4
Q ss_pred cccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 28 CSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 28 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
+....|...+++++..+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCh---hHHHHH------------HHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcC
Q 009096 108 AVRLDPGYN---RAHQRL------------ASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIG 171 (543)
Q Consensus 108 al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (543)
+++.+|++. .++..+ |.++...|++++|+..|++++. .+.. ...+..++.++...|
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD--------AELRELRAECFIKEG 191 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTT
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHCC
Confidence 999999988 776655 6669999999999999999886 3322 244778899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH------HHHHHHHHHHHhh
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF------LVWLLKLMFNISE 245 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~~~~ 245 (543)
++++|+..++++++.+|.. +.++..+|.++...|++++|+..|++++...|++......+ .....+|.++...
T Consensus 192 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887 78899999999999999999999999999999986554333 1224458999999
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
|++++|+..|++++...|+++..... .+..+|.++...|++++|+..++++++.+|+++.+|..+|.++...
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVR--------SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHH--------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 99999999999999999998764321 1345899999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------HHHcc-----CHHHHHHHHHH-HHhcCCCC
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVS------------NEKLG-----RWSEAVRDYEA-LRRELPGD 379 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~ 379 (543)
|++++|+..|+++++++|+++.++..++.+ |..+| +.+++.+.|++ +++..|++
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999955 44445 56778899986 88898875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=279.86 Aligned_cols=318 Identities=12% Similarity=0.028 Sum_probs=268.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhh----------------------------------------
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAY---------------------------------------- 84 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------------------------------- 84 (543)
+.++..|+.+|..+.+.|++++|+..|+++++.+|++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 4568889999999999999999999999998888765444
Q ss_pred -------------------------------HHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q 009096 85 -------------------------------RSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 85 -------------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (543)
+..+|.+|...|++++|+..|+++++.+|++..++..++.++...|+++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 4455566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 134 NARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 134 ~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
+|+..+++++. .++ ....+..++..+...|++++|+..|+++++..|.+ ...+..++.++...|++++|+
T Consensus 357 ~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 357 KLYLISNDLVDRHPE--------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHHHHHHHHHCTT--------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhCcc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 66666665554 111 13456778899999999999999999999998876 778899999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
..|+++++..|.+...+.. +|.++...|++++|+..|+++++..|+++..+ ..+|.++...|
T Consensus 428 ~~~~~~~~~~~~~~~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~g 489 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLF------LGMQHMQLGNILLANEYLQSSYALFQYDPLLL------------NELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHH------HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHTT
T ss_pred HHHHHHHHhCccchHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH------------HHHHHHHHHhC
Confidence 9999999999988665444 49999999999999999999999999988775 34799999999
Q ss_pred CHHHHHHHHHHHhcc------CCCC-hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 293 RYSEACSAYGEGLKY------DSYN-SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 293 ~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
++++|++.|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999988 5664 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Q 009096 366 VRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 366 ~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
.+.|+++++++|+++.++..+..+
T Consensus 570 ~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 570 ITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999998887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.26 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=252.2
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCCh-HHHhHHHH--
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDP-NELLKLQS-- 156 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~-~~~~~~~~-- 156 (543)
.+..+..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++ .|+. ..+..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 689999999999999999999999999987 3333 32211111
Q ss_pred --------------------------------------------------------------------------------
Q 009096 157 -------------------------------------------------------------------------------- 156 (543)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (543)
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence
Q ss_pred ----------------------HHHHHHHHHhhh---hcCCHHHHHHHHHHHHH-----c--CCCC------CHHHHHHH
Q 009096 157 ----------------------FEKHLNRCAESR---KIGDWKTVLRETDAAIA-----I--GVDS------SPQLVACK 198 (543)
Q Consensus 157 ----------------------~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~-----~--~p~~------~~~~~~~~ 198 (543)
...++..+..+. ..|++++|+..++++++ . .|+. ...++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 112223333333 38999999999999999 5 4433 25678889
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
|.++...|++++|+..++++++..|. .. .+..+|.++...|++++|+..+++++..+|++..++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------- 307 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VN------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY--------- 307 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HH------HHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH---------
Confidence 99999999999999999999999888 33 445559999999999999999999999999998875
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++..|+++.++..+|.++..
T Consensus 308 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 308 ---YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384 (514)
T ss_dssp ---HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNE------VAESLHNAQVA 392 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~ 392 (543)
.|++++|+..|++++++.|+++. ++..++.+...
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999866 77777766655
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=263.82 Aligned_cols=315 Identities=17% Similarity=0.060 Sum_probs=283.5
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
...|...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34577778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC---CChhHHHHH------------HHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCH
Q 009096 110 RLDP---GYNRAHQRL------------ASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDW 173 (543)
Q Consensus 110 ~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (543)
+.+| ++..++..+ |.++...|++++|+..++++++ .++. ...+..++.++...|++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD--------AELRELRAECFIKEGEP 170 (359)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCH
T ss_pred hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHCCCH
Confidence 9999 888888877 7999999999999999999887 3332 24578889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH------HHHHHHHHHHhhcC
Q 009096 174 KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------VWLLKLMFNISELR 247 (543)
Q Consensus 174 ~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~g~ 247 (543)
++|+..++++++..|.. +..+..+|.++...|++++|+..++++++..|++...+..+. .....|.++...|+
T Consensus 171 ~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (359)
T 3ieg_A 171 RKAISDLKAASKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR 249 (359)
T ss_dssp HHHHHHHHHHHTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887 788999999999999999999999999999999866544332 23455889999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccC
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGL 327 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 327 (543)
+++|+..+++++...|+++..+... +..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 250 YTDATSKYESVMKTEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999987654221 34589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 328 WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 328 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+++|+..|+++++++|++..++..++.++..+++
T Consensus 322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=270.18 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=254.0
Q ss_pred CCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 009096 37 NNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD---- 112 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 112 (543)
+++.+...| +...++.+|.++...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.....
T Consensus 107 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 184 (597)
T 2xpi_A 107 GEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK 184 (597)
T ss_dssp HHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccc
Confidence 333444455 4467778888888888888888888887654 5567777777777777777777777777522221
Q ss_pred ------------CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCC-hHHHhHH------------------------
Q 009096 113 ------------PGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPD-PNELLKL------------------------ 154 (543)
Q Consensus 113 ------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~-~~~~~~~------------------------ 154 (543)
|.+..+|..+|.+|.+.|++++|+..|+++++ .++ ...+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 264 (597)
T 2xpi_A 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264 (597)
T ss_dssp ------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHH
T ss_pred ccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccc
Confidence 22366777777777777777777777777765 222 2111100
Q ss_pred --------------------------------------HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 155 --------------------------------------QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 155 --------------------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.....+..++..+...|++++|+..|+++++.+|.+ ..++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 343 (597)
T 2xpi_A 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-LDVYP 343 (597)
T ss_dssp GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-CTTHH
T ss_pred cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc-HHHHH
Confidence 123345666777777888888888888888777765 55667
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.++.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------ 411 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAV------TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI------ 411 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHH------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH------
Confidence 7778888888888888888887777777643 3444488888889999999999998888888877653
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.+|.++...|++++|++.|+++++..|++..++..+|.+|.+.|++++|++.|+++++..|+++.+|..+|.++
T Consensus 412 ------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 412 ------GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhc------CCCC-hHHHHHHHHHHHHHHhh
Q 009096 357 EKLGRWSEAVRDYEALRRE------LPGD-NEVAESLHNAQVALKKS 396 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~l~~~ 396 (543)
...|++++|++.|++++++ +|++ ..++..++.+....++.
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999988 5554 56777777766665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=258.62 Aligned_cols=293 Identities=15% Similarity=0.002 Sum_probs=177.7
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q 009096 57 EMYRKGNFVEALK-LYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ 131 (543)
Q Consensus 57 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (543)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5556678888888 8888888777663 5577888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------------
Q 009096 132 VENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA-------------- 196 (543)
Q Consensus 132 ~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-------------- 196 (543)
+++|+..|++++. .++. ...+..++.++...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 114 ELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence 8888877776665 2221 2235556666666666666666667777666655222111
Q ss_pred -HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhH
Q 009096 197 -CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275 (543)
Q Consensus 197 -~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 275 (543)
.++.++ ..|++++|+..++++++..|.... ...+..+|.++...|++++|+..|++++..+|++..++
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------ 254 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW------ 254 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH------
Confidence 234444 566666666666666666655211 12233336666666666666666666666666655443
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---------- 345 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------- 345 (543)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++.+.|++
T Consensus 255 ------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 255 ------NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred ------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 2246666666666666666666666666666666666666666666666666666666665555
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 346 -TKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 346 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..+|..+|.++..+|++++|...++++++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 55666666666666666666665555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=258.03 Aligned_cols=339 Identities=12% Similarity=-0.054 Sum_probs=247.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc---------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM---------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLD--- 112 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 112 (543)
+..+..+..+|.++...|++++|+++|++++++ +|....++.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345667889999999999999999999999986 56667889999999999999999999999999863
Q ss_pred -----CCChhHHHHHHHHHHHhC--CHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHh---hhhcCCHHHHHHHHH
Q 009096 113 -----PGYNRAHQRLASLYFRLG--QVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAE---SRKIGDWKTVLRETD 181 (543)
Q Consensus 113 -----p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~ 181 (543)
+..+.++..+|.++...| ++++|+.+|+++++ .|+... .+..++.+ +...+++++|+..++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~--------~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE--------FTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH--------HHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 345778888888877654 79999999999987 444332 12333333 345688899999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 182 AAIAIGVDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 182 ~~l~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
++++++|+. ..++..+|..+.. .+++++|+..+++++..+|...... ..+|.++...|++++|+..|++
T Consensus 200 ~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 200 QAIRLNPDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL------RSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHCSSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCCcc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH------HHHHHHHHHcCchHHHHHHHHH
Confidence 999999987 6677777766554 4678899999999999999986544 4449999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRA-------RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~-------~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 330 (543)
+++.+|++..++..+..+...... ...+......+.+++|+..|+++++.+|.+..++..+|.++...|++++
T Consensus 273 al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 999999998876543322111000 0011111223346677777777777777777777778888888888888
Q ss_pred HHHHHHHHHhhCCCCHH---HHHHHHHH-HHHccCHHHHHHHHHHHHhc------------------------CCCChHH
Q 009096 331 SIEDCNVALRIQPNYTK---ALLRRAVS-NEKLGRWSEAVRDYEALRRE------------------------LPGDNEV 382 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~ 382 (543)
|+.+|++++.++|++.. +++.+|.+ +...|++++|+.+|++++++ +|+++.+
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88888887777766543 34555544 34667777777777777655 4556677
Q ss_pred HHHHHHHHHHHHhhhh
Q 009096 383 AESLHNAQVALKKSRG 398 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~ 398 (543)
+..++.+....++...
T Consensus 433 ~~~LG~~~~~~g~~~~ 448 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQ 448 (472)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCHHH
Confidence 7777777776665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=253.54 Aligned_cols=273 Identities=15% Similarity=0.075 Sum_probs=186.6
Q ss_pred cccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
.....+.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 57 HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33334455667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC---------
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS--------- 190 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--------- 190 (543)
..+|.++..+|++++|+..|+++++ ..|+.
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------------~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIK-----------------------------------------QNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------HCHHHHCC------
T ss_pred HHHHHHHHccccHHHHHHHHHHHHH-----------------------------------------hCccchHHHhhhcc
Confidence 9999999999999999988866643 21111
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCC--CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHY--SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
....+..+|.++...|++++|+..++++++..|. ++. .+..+|.++...|++++|+..|+++++.+|++..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 249 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 0122233455555555555555555555555555 322 23333666666666666666666666666666554
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC----
Q 009096 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN---- 344 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 344 (543)
+ ..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus 250 ~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 317 (365)
T 4eqf_A 250 W------------NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317 (365)
T ss_dssp H------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---
T ss_pred H------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC
Confidence 3 235666666666666666666666666666666666666666666666666666666666555
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 345 --------YTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 345 --------~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
+..+|..++.++..+|+.+.|....++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ---------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 245566666666666666666555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=244.01 Aligned_cols=260 Identities=12% Similarity=0.015 Sum_probs=221.5
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC-HHHHHHHHHHHHhcCCCChh
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 117 (543)
.++..+|.+++++..+|.++...|++++|+..|+++++++|++..+|+++|.++..+|+ +++|+..|+++++++|++..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 46788899999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
+|+++|.++..+|++++|+..| +++++++|++ ..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~-----------------------------------------~kal~ldP~~-~~---- 201 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YH---- 201 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HH----
T ss_pred HHHHHHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhCccC-HH----
Confidence 9999999988877766665554 5556666655 23
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+|..+|.++..+|++++|+..|+++++++|++..+|.
T Consensus 202 ------------------------------------a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~------- 238 (382)
T 2h6f_A 202 ------------------------------------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN------- 238 (382)
T ss_dssp ------------------------------------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH-------
T ss_pred ------------------------------------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH-------
Confidence 3444477777777888888888888888888887763
Q ss_pred HHHHHHHHHHHHh-cCCHHHH-----HHHHHHHhccCCCChhHHhHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHH
Q 009096 278 VVRARTRGNNLFS-SRRYSEA-----CSAYGEGLKYDSYNSILYCNRAICWSKMG--LWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 278 ~~~~~~~g~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
.+|.++.. .|.+++| +.+|+++++++|++..+|+++|.++...| ++++|++.++++ +.+|+++.++
T Consensus 239 -----~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 239 -----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp -----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred -----HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 46888888 5554777 58999999999999999999999999988 699999999998 9999999999
Q ss_pred HHHHHHHHHcc--------C-HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHH
Q 009096 350 LRRAVSNEKLG--------R-WSEAVRDYEAL-RRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 350 ~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~l 393 (543)
..+|.++.++| + +++|+++|+++ ++++|.....|..+.......
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999985 3 59999999999 999999999998887765544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=244.93 Aligned_cols=285 Identities=15% Similarity=0.090 Sum_probs=231.1
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
.+++.++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HH
Q 009096 126 YFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK-AE-AH 202 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~-a~-~~ 202 (543)
+...|++++|+..+++++. .+..... +... ....|.. .....+ +. ++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~--------------------~~~~~~~--~~~~~~~~~~~~ 148 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL--------GSVN--------------------LQADVDI--DDLNVQSEDFFF 148 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------------CCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH--------HHHH--------------------hHHHHHH--HHHHHHHHhHHH
Confidence 9999999999998876654 1111110 0000 0000000 000112 33 46
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++..++ .
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~ 210 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMNPNDAQ------LHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW------------N 210 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------H
T ss_pred HHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH------------H
Confidence 6777777777777777777777643 344448888899999999999999999999887764 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------------CHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN------------YTKALL 350 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~ 350 (543)
.+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|++++...|+ ++.++.
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998 788999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.+|.++..+|++++|...++++++..|+
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999888776554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=245.23 Aligned_cols=307 Identities=13% Similarity=0.066 Sum_probs=242.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHH-HHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVS-DCEEAVRLDPGYN----RAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 134 (543)
..+.++.+...++.+....|. ++..+|+|++|+. .|++++.+.|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344455555555555555442 5666799999999 9999999998874 569999999999999999
Q ss_pred HHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHH
Q 009096 135 ARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADS 213 (543)
Q Consensus 135 A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~ 213 (543)
|+..|+++++ .|+. ...+..+|.++...|++++|+..++++++.+|+. ..++..+|.++...|++++|+.
T Consensus 83 A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 83 AVLLFEAAVQQDPKH--------MEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp HHHHHHHHHHSCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999987 3332 2457788999999999999999999999999987 7889999999999999999999
Q ss_pred HhhcCCCCCCCCChhHHHH----------HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHH
Q 009096 214 CLSNMPKFEHYSPPSQVKF----------LVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRA 281 (543)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~ 281 (543)
.+++++...|.+....... ..+...+.++ ..|++++|+..|++++..+|+ +..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~------------ 220 (368)
T 1fch_A 154 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ------------ 220 (368)
T ss_dssp HHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH------------
T ss_pred HHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH------------
Confidence 9999999999886544311 0001225555 899999999999999999999 56554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHHHhhhh
Q 009096 362 WSEAVRDYEALRRELPGD-----------NEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~l~~~~~ 398 (543)
+++|+.+|++++++.|++ ..++..++.+...+++...
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999999999999998 8899999988888876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=245.07 Aligned_cols=275 Identities=16% Similarity=0.097 Sum_probs=227.8
Q ss_pred HHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 68 LKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 68 ~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
+..+.+++...+.++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~---- 122 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL---- 122 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHH----
Confidence 345555555555554 459999999999999999999999999999999999999999999988888887766
Q ss_pred CCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 144 HHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
+++++.+|.. ..++..+|.++...|++++|+..++++++..|
T Consensus 123 -------------------------------------~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 123 -------------------------------------QRCLELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp -------------------------------------HHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred -------------------------------------HHHHhcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 5556667766 78899999999999999999999999999888
Q ss_pred CCChhHHHH----HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHH
Q 009096 224 YSPPSQVKF----LVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEA 297 (543)
Q Consensus 224 ~~~~~~~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A 297 (543)
.+......+ ..+..+|.++...|++++|+..|++++..+|+ ++.++ ..+|.++...|++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------~~l~~~~~~~g~~~~A 232 (365)
T 4eqf_A 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ------------TGLGVLFHLSGEFNRA 232 (365)
T ss_dssp HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH------------HHHHHHHHHHTCHHHH
T ss_pred cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH------------HHHHHHHHHCCCHHHH
Confidence 764433221 22334488999999999999999999999999 66664 3479999999999999
Q ss_pred HHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 298 CSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 298 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+.+|++++++.|
T Consensus 233 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 233 IDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C------------ChHHHHHHHHHHHHHHhh
Q 009096 378 G------------DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 378 ~------------~~~~~~~l~~~~~~l~~~ 396 (543)
+ +..++..+..+...+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 313 KSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp CC------------CHHHHHHHHHHHHHTCH
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 8 367788888877777654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=239.50 Aligned_cols=275 Identities=13% Similarity=0.020 Sum_probs=243.6
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEE 107 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 107 (543)
....|...+++.+..+|.+...+..++.++...|++++|+..++++++.+|+++.+++.+|.++...| ++++|+..|++
T Consensus 37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33457777888889999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 187 (543)
+++.+|+++.++..+|.++...|++++|+..| +++++..
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~ 155 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY-----------------------------------------FTAAQLM 155 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHT
T ss_pred HHHhCCccHHHHHHHHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhc
Confidence 99999999999999999999988888887766 4555566
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-----
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD----- 262 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----- 262 (543)
|.. ...+..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++...
T Consensus 156 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 156 KGC-HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp TTC-SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred ccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 665 456677899999999999999999999999998854 34455999999999999999999999876
Q ss_pred ----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 263 ----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 263 ----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
|....++ ..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+.+|+++
T Consensus 229 ~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 229 EVTVDKWEPLL------------NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp SCTTTTCCHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred cccccHHHHHH------------HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444443 347999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHH-HHccCHH
Q 009096 339 LRIQPNYTKALLRRAVSN-EKLGRWS 363 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~-~~~g~~~ 363 (543)
++++|+++.++..+|.++ ...|+.+
T Consensus 297 l~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 5666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=217.68 Aligned_cols=242 Identities=24% Similarity=0.377 Sum_probs=206.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
+..++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++.+|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3467889999999999999999999999999998 888999999999999999999999999999988766 45
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
++..+|.++...|++++|+..| ++++...|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~-------- 111 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYY-----------------------------------------QKSLTEHRT-------- 111 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHCCC--------
T ss_pred HHHHHHHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCch--------
Confidence 6666666666665555555544 333333322
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+.++...|++++|+..+++++..+|.+..++
T Consensus 112 -----------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------- 142 (258)
T 3uq3_A 112 -----------------------------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEA-------- 142 (258)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--------
T ss_pred -----------------------------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHH--------
Confidence 2346667888899999999999888877664
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 143 ----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 143 ----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhcC------CCChHHHHHHHHH
Q 009096 358 KLGRWSEAVRDYEALRREL------PGDNEVAESLHNA 389 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 389 (543)
..|++++|+.+|+++++++ |++..++..+..+
T Consensus 219 ~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 219 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999 9998888777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-27 Score=217.29 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=199.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhc
Q 009096 92 LTALGRLTEAVSDCEEAVRLDPGY-NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKI 170 (543)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (543)
.+..|+|.+|+..+++....+|++ .++...++.+|..+|++++|+..++.. ++. ....+..++..+...
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~------~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAP------ELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCH------HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CCh------hHHHHHHHHHHHcCC
Confidence 344555555555555554444444 234455555555555555555554331 111 122344445555566
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcCh
Q 009096 171 GDWKTVLRETDAAIAI--GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRF 248 (543)
Q Consensus 171 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 248 (543)
+++++|+..+++++.. +|++ +.++..+|.++...|++++|+..+++ |.+.. .+..+|.++..+|++
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~------~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE------CMAMTVQILLKLDRL 146 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH------HHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH------HHHHHHHHHHHCCCH
Confidence 6677777777887765 4666 78899999999999999999999998 55533 455559999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
++|+..|+++++.+|++....... .....+...|++++|+..|+++++.+|+++.+++++|.++..+|++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999986443110 0123344569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCChHHHHH
Q 009096 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE-AVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~ 385 (543)
++|+..|+++++.+|++++++.++|.++...|++++ +.++++++++++|+++.+...
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999999999999999976 578999999999999998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-27 Score=216.79 Aligned_cols=252 Identities=13% Similarity=0.011 Sum_probs=197.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----HHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR----AHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l 122 (543)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.++. ++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999998 444433 36777
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.++...|++++|+..| +++++.+|.. ..++..+|.++
T Consensus 81 g~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQY-----------------------------------------QAAVDRDTTR-LDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCccc-HHHHHHHHHHH
Confidence 77777766666665554 6667777776 67889999999
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
...|++++|+..++++++.+|.+... +..+|......+++++|+..|+++++.+|++...+ .
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~------------~ 180 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTDPKV------FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY------------L 180 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------H
T ss_pred HHccCHHHHHHHHHHHhhcCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHH------------H
Confidence 99999999999999999999998554 44448444555699999999999999999997765 3
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 283 TRGNNLFSSRR---YSEACSAYGEGLKYD---SYN-----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 283 ~~g~~~~~~~~---~~~A~~~~~~al~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.+|.++...++ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+.+|+++++++|+++.++-.
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 46888888888 888999999998875 432 2567777777777777777777777777777777777777
Q ss_pred HHHHHHHc
Q 009096 352 RAVSNEKL 359 (543)
Q Consensus 352 la~~~~~~ 359 (543)
++.+....
T Consensus 261 l~~~~~~~ 268 (272)
T 3u4t_A 261 LKMKLEHH 268 (272)
T ss_dssp HC------
T ss_pred hhhhhccc
Confidence 66665443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=217.93 Aligned_cols=254 Identities=12% Similarity=-0.023 Sum_probs=219.4
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 67 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-------------- 67 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------------
Confidence 456789999999999999999999999999999999999999999999999999988886655411
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
.++......+..+|.++...|++++|+..++++++.+|.+...+.. +|.
T Consensus 68 -------------------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------l~~ 116 (272)
T 3u4t_A 68 -------------------------NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ------IGS 116 (272)
T ss_dssp -------------------------CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH------HHH
T ss_pred -------------------------CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH------HHH
Confidence 1122335668889999999999999999999999999998765444 499
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHH
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 320 (543)
++...|++++|+..|+++++.+|.+..++. .+|...+..+++++|+..|+++++.+|++..++..+|.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFY------------ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSSCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhcCCCcHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 999999999999999999999999988753 46844555669999999999999999999999999999
Q ss_pred HHHHccC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 321 CWSKMGL---WENSIEDCNVALRIQ---PN-----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 321 ~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
++..+|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++.++..+..+
T Consensus 185 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 185 ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 9999999 999999999999886 44 237899999999999999999999999999999999999887765
Q ss_pred HH
Q 009096 390 QV 391 (543)
Q Consensus 390 ~~ 391 (543)
..
T Consensus 265 ~~ 266 (272)
T 3u4t_A 265 LE 266 (272)
T ss_dssp --
T ss_pred hc
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=237.65 Aligned_cols=305 Identities=12% Similarity=0.036 Sum_probs=240.3
Q ss_pred cCCHHHHHHHHHHHHh----cCC--cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHH
Q 009096 61 KGNFVEALKLYDKAIS----MSP--ENAAYRSNRAATLTALGRLTEAVSDCEEAVRL---------DPGYNRAHQRLASL 125 (543)
Q Consensus 61 ~g~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~ 125 (543)
.++.+.++..+++.+. ..+ .....+..+|.++..+|++++|+++|++++++ +|....+|.++|.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 3445555555554443 222 23567889999999999999999999999986 56778889999999
Q ss_pred HHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhh--hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 126 YFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAES--RKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
|..+|++++|+.+|++++. ...+.. ......+...|..+ ...++|++|+.+|+++++++|++ +.++..++
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~ 179 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYR---IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLA 179 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSC---CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccc---hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 9999999999999988765 111100 00122344445444 44568999999999999999987 77888888
Q ss_pred HHHHH---ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHH
Q 009096 200 EAHLK---LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVK 276 (543)
Q Consensus 200 ~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 276 (543)
.++.. .++.++|+..++++++++|++......+. ...+.++...+++++|+..+++++..+|++..++
T Consensus 180 ~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~--~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------- 250 (472)
T 4g1t_A 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA--LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL------- 250 (472)
T ss_dssp HHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH--HHHHHCC------CHHHHHHHHHHHHCSSCHHHH-------
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-------
Confidence 87654 46778999999999999999866544431 1113344556789999999999999999999875
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-------------------cCHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-------------------GLWENSIEDCNV 337 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~ 337 (543)
..+|.++...|++++|+..|+++++.+|+++.++.++|.+|... +.+++|+..|++
T Consensus 251 -----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 251 -----RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34799999999999999999999999999999999999998653 347889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
++.++|.+..++..+|.++...|++++|+.+|+++++++|++....
T Consensus 326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999999999999999999999999999999999876543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=206.34 Aligned_cols=213 Identities=19% Similarity=0.187 Sum_probs=176.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009096 124 SLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHL 203 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~ 203 (543)
.++..++. .. +.
T Consensus 81 ~~~~~~~~---------~~---------------------------------------------~~-------------- 92 (217)
T 2pl2_A 81 EAYVALYR---------QA---------------------------------------------ED-------------- 92 (217)
T ss_dssp HHHHHHHH---------TC---------------------------------------------SS--------------
T ss_pred HHHHHhhh---------hh---------------------------------------------hh--------------
Confidence 88765410 00 00
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
.....|++++|+..|+++++++|++..++ ..
T Consensus 93 -------------------------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~------------~~ 123 (217)
T 2pl2_A 93 -------------------------------------RERGKGYLEQALSVLKDAERVNPRYAPLH------------LQ 123 (217)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHH------------HH
T ss_pred -------------------------------------hcccccCHHHHHHHHHHHHHhCcccHHHH------------HH
Confidence 01235889999999999999999999876 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 363 (543)
+|.++...|++++|+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 7999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 009096 364 EAVRDYEALRR 374 (543)
Q Consensus 364 ~A~~~~~~al~ 374 (543)
+|+..|+++-.
T Consensus 203 ~A~~~~~~~~~ 213 (217)
T 2pl2_A 203 EAARAAALEHH 213 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 99999987643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=216.71 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=216.0
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
+...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------- 82 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR----------------- 82 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 356789999999999999999999999999999999999999999999999888888775544
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH-------
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL------- 233 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------- 233 (543)
+.+|.. ..++..+|.++...|++++|+..++++++..|.+......+.
T Consensus 83 ------------------------~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 83 ------------------------MLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp ------------------------HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred ------------------------hcCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 334443 445555566666666666666666666665555543322210
Q ss_pred HHHHH-HH-HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 234 VWLLK-LM-FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 234 ~~~~~-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
..... +. ++...|++++|+..++++++..|++..++ ..+|.++...|++++|+..++++++.+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH------------ASLGVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 00011 33 47889999999999999999999988765 347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------------C
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG------------D 379 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~ 379 (543)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+ +
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q 009096 380 NEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 380 ~~~~~~l~~~~~~l~~~~~ 398 (543)
+.++..++.+...+++...
T Consensus 286 ~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCHHH
Confidence 8888888888777765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=228.59 Aligned_cols=309 Identities=13% Similarity=0.031 Sum_probs=239.5
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL------DPG 114 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 114 (543)
+.....++.+|..++..|++++|+.+|+++++..|.++ .++..+|.++...|++++|+..+++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34677899999999999999999999999999999884 68899999999999999999999999887 344
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
...++..+|.++..+|++++|+.++++++. ...+. .++.....+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~ 129 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLD----------------------------------ISREL--NDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHH--TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------HHHhc--ccccchHHH
Confidence 577889999999999999999998876653 00000 000001335
Q ss_pred HHHHHHHHHHccC--------------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH
Q 009096 195 VACKAEAHLKLHQ--------------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS 254 (543)
Q Consensus 195 ~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 254 (543)
+..+|.++...|+ +++|+..+.+++...+...........+..+|.++...|++++|+..
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5666777777777 77777777776655443333344455677779999999999999999
Q ss_pred HHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCH
Q 009096 255 AEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLW 328 (543)
Q Consensus 255 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 328 (543)
+++++.+.|....... ....+..+|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++
T Consensus 210 ~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAA------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 9999977654332111 11224568999999999999999999999886655 67899999999999999
Q ss_pred HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHh
Q 009096 329 ENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD------NEVAESLHNAQVALKK 395 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~ 395 (543)
++|+..|++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ..+...++.+...++.
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 99999999999885543 6789999999999999999999999999985433 4455555555555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=221.28 Aligned_cols=330 Identities=8% Similarity=-0.026 Sum_probs=244.2
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (543)
.++..+|.+...|..++.. ...|++++|...|+++++.+|.+..+|..++..+...|++++|...|++++...| +...
T Consensus 4 ~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~l 81 (530)
T 2ooe_A 4 KKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDL 81 (530)
T ss_dssp HHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHH
T ss_pred hHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHH
Confidence 3455667777777777663 5667777777777777777777777777777777777777777777777777666 3444
Q ss_pred HHHHH------------------------------------------HHHHH---------hCCHHHHHHHhcCCCCCCC
Q 009096 119 HQRLA------------------------------------------SLYFR---------LGQVENARHHLCFPGHHPD 147 (543)
Q Consensus 119 ~~~la------------------------------------------~~~~~---------~g~~~~A~~~~~~a~~~~~ 147 (543)
|..++ ..... .|++++|...|++++..|.
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 43333 33322 5778888899999887433
Q ss_pred hH---HHhHHHHHHH----------------HHHHHH--------------------------------------hhhh-
Q 009096 148 PN---ELLKLQSFEK----------------HLNRCA--------------------------------------ESRK- 169 (543)
Q Consensus 148 ~~---~~~~~~~~~~----------------~~~~~~--------------------------------------~~~~- 169 (543)
.. .+........ .+..+. ....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 21 1111100000 000000 0000
Q ss_pred -----cCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------ccChh-------HHHHHhhcCCC-CCCCC
Q 009096 170 -----IGDW----KTVLRETDAAIAIGVDSSPQLVACKAEAHLK-------LHQNE-------DADSCLSNMPK-FEHYS 225 (543)
Q Consensus 170 -----~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~ 225 (543)
.++. +.++..|++++...|.+ +.+|..+|..+.. .|+++ +|+..|+++++ ..|++
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~-~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 1122 36778999999999877 8899999999886 79987 99999999997 78987
Q ss_pred ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH-HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009096 226 PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV-EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG 304 (543)
Q Consensus 226 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 304 (543)
... |...+.++...|++++|...|+++++..|.++ .+| ...|..+.+.|++++|+..|+++
T Consensus 321 ~~l------~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 321 MLL------YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY------------IQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHH------HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHH------------HHHHHHHHHhcCHHHHHHHHHHH
Confidence 554 44458999999999999999999999999875 343 33688888899999999999999
Q ss_pred hccCCCChhHHhHHHHH-HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH--
Q 009096 305 LKYDSYNSILYCNRAIC-WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE-- 381 (543)
Q Consensus 305 l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 381 (543)
++..|.....+...+.+ +...|++++|+..|+++++.+|+++.+|..++.++...|+.++|...|++++...|.+++
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 99999888777776665 446999999999999999999999999999999999999999999999999999887766
Q ss_pred --HHHHHHHH
Q 009096 382 --VAESLHNA 389 (543)
Q Consensus 382 --~~~~l~~~ 389 (543)
++..+...
T Consensus 463 ~~lw~~~~~~ 472 (530)
T 2ooe_A 463 GEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 55444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=228.53 Aligned_cols=294 Identities=12% Similarity=0.027 Sum_probs=235.1
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch----hhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA----AYRSNRAATLTALGRLTEAVSDCEEAVRL------DP 113 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 113 (543)
++..+..++.+|..++..|++++|+..|+++++.+|+++ .++..+|.+|...|++++|+..|++++++ .|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 356778899999999999999999999999999999986 58999999999999999999999999988 56
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQ 193 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 193 (543)
....++..+|.++..+|++++|+.+|++++. .+.+. . ++.....
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~-~-~~~~~~~ 167 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLT----------------------------------LARQL-G-DRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHH-T-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHHHh-h-chHHHHH
Confidence 6778899999999999999999998876643 00000 0 0001134
Q ss_pred HHHHHHHHHHHccC-----------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 009096 194 LVACKAEAHLKLHQ-----------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAE 256 (543)
Q Consensus 194 ~~~~~a~~~~~~~~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 256 (543)
++..+|.++...|+ +++|+..+++++...+...........+..+|.++...|++++|+.+++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 55666777777777 7777777776665543333333444567777999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHH
Q 009096 257 KAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWEN 330 (543)
Q Consensus 257 ~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 330 (543)
+++.+.+....... ....+..+|.++...|++++|+..|++++...+.. ..++..+|.++...|++++
T Consensus 248 ~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (411)
T 4a1s_A 248 ERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99987765332111 11224568999999999999999999999887644 6789999999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 331 SIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 331 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
|+.++++++.+.+.. ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus 322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999885432 4689999999999999999999999999998653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=216.03 Aligned_cols=226 Identities=13% Similarity=0.048 Sum_probs=199.4
Q ss_pred HHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-HHHHHHHhcCCCCCCChHHHh
Q 009096 74 AISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ-VENARHHLCFPGHHPDPNELL 152 (543)
Q Consensus 74 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~ 152 (543)
++..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~------------- 155 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI------------- 155 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH-------------
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHH-------------
Confidence 5677889999999999999999999999999999999999999999999999988875 77666655
Q ss_pred HHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 153 KLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
+++++++|++ ..
T Consensus 156 ----------------------------~~al~l~P~~-~~--------------------------------------- 167 (382)
T 2h6f_A 156 ----------------------------TAIIEEQPKN-YQ--------------------------------------- 167 (382)
T ss_dssp ----------------------------HHHHHHCTTC-HH---------------------------------------
T ss_pred ----------------------------HHHHHHCCCC-HH---------------------------------------
Confidence 5566666655 22
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
+|..+|.++..+|++++|+..|++++.++|++..+| ..+|.++...|++++|+.+|+++++++|++.
T Consensus 168 -a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~------------~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 168 -VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW------------QHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp -HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 344447777888888999999999999999999986 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHH-ccCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCChHHHH
Q 009096 313 ILYCNRAICWSK-MGLWENS-----IEDCNVALRIQPNYTKALLRRAVSNEKLG--RWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 313 ~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.+|+++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.++++ +.+|+++.+..
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~ 313 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHH
Confidence 999999999999 5554788 59999999999999999999999999988 799999999998 99999999999
Q ss_pred HHHHHHHHHH
Q 009096 385 SLHNAQVALK 394 (543)
Q Consensus 385 ~l~~~~~~l~ 394 (543)
.++.+...++
T Consensus 314 ~La~~~~~~~ 323 (382)
T 2h6f_A 314 FLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887774
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=218.16 Aligned_cols=287 Identities=13% Similarity=0.037 Sum_probs=224.6
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCCCh
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----AAYRSNRAATLTALGRLTEAVSDCEEAVRL------DPGYN 116 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (543)
+...++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 46688999999999999999999999999999988 478889999999999999999999999887 34557
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCC----CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGH----HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP 192 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 192 (543)
.++..+|.++...|++++|+..+++++. ..++. . ..
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~-----------------------------------~~ 123 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----G-----------------------------------EA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----H-----------------------------------HH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-----H-----------------------------------HH
Confidence 7888999999999999999988876653 00000 0 12
Q ss_pred HHHHHHHHHHHHccC--------------------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH
Q 009096 193 QLVACKAEAHLKLHQ--------------------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV 252 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 252 (543)
.++..+|.++...|+ +++|+..+++++...+...........+..+|.++...|++++|+
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 345556666666666 666666666665543333233334456777799999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------hhHHhHHHHHHHHcc
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------SILYCNRAICWSKMG 326 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 326 (543)
..+++++...+...... .....+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|
T Consensus 204 ~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp HHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 99999997755432211 111224568999999999999999999999886654 678999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 327 LWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++++|+..+++++.+.+.. ..++..+|.++...|++++|..+|++++++.+..
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999886542 4688999999999999999999999999997753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=211.77 Aligned_cols=318 Identities=9% Similarity=-0.066 Sum_probs=205.7
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHh----cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHH
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYR----KGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSD 104 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 104 (543)
|...++++... .++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..
T Consensus 62 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 62 AMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44444444443 577888888888888 88888888888888765 467788888888887 7788888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh----cCCHHHH
Q 009096 105 CEEAVRLDPGYNRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK----IGDWKTV 176 (543)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A 176 (543)
|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++++..++. .++.++..+.. .+++++|
T Consensus 138 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~---------a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 138 FRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW---------SCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHhcCCCCCcCHHHH
Confidence 8888764 567788888888877 778888888888776643332 23344444444 4555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHH--------------------
Q 009096 177 LRETDAAIAIGVDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKF-------------------- 232 (543)
Q Consensus 177 ~~~~~~~l~~~p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------------- 232 (543)
+..|+++.+.+ .+..+..+|.+|.. .+++++|+..|+++.+..+ +.....+
T Consensus 207 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 207 AQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 55555555432 13444444544443 4445555555544443321 1111111
Q ss_pred ----------HHHHHHHHHHHhh-----cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC---CH
Q 009096 233 ----------LVWLLKLMFNISE-----LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR---RY 294 (543)
Q Consensus 233 ----------~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~ 294 (543)
.+++.+|.++... +++++|+.+|+++.+..+ +.+ +..+|.++...| ++
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a------------~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATA------------QANLGAIYFRLGSEEEH 347 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHH------------HHHHHHHHHHSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHH------------HHHHHHHHHhCCCcccH
Confidence 1222234444444 455555555555544322 222 244677777755 77
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHH
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAV 366 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 366 (543)
++|+++|+++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+
T Consensus 348 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 348 KKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 8888888888776 567888888888888 78888888888888875 367888888888887 78888888
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHH
Q 009096 367 RDYEALRRELPG---DNEVAESLHN 388 (543)
Q Consensus 367 ~~~~~al~~~p~---~~~~~~~l~~ 388 (543)
.+|+++++.+|+ ++.+...++.
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 888888888854 6666555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-23 Score=207.59 Aligned_cols=304 Identities=12% Similarity=0.006 Sum_probs=231.5
Q ss_pred cccCHHHHHHHhhHHHh----cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 009096 44 VAVDAEEVKRAGNEMYR----KGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSDCEEAVRLDPGY 115 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 115 (543)
.+.++++++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. .+
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GL 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 45689999999999999 89999999999999986 678999999999999 99999999999999875 58
Q ss_pred hhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh----cCCHHHHHHHHHHHHHcC
Q 009096 116 NRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRK----IGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 116 ~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~ 187 (543)
+.+++.+|.+|.. .+++++|+.+|+++....++ ..++.++..+.. .+++++|+..|+++++.+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD---------SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8999999999999 89999999999998764433 346777887776 889999999999999873
Q ss_pred CCCCHHHHHHHHHHHHH----ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHh
Q 009096 188 VDSSPQLVACKAEAHLK----LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAG 259 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al 259 (543)
.+.++..+|.+|.. .+++++|+.+|+++.+.. ++. +++.+|.++.. .+++++|+.+|++++
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~------a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DEL------GQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHH------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 47889999999998 899999999999998753 322 44455888876 789999999999988
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-----cCHHH
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-----GLWEN 330 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~ 330 (543)
+.. ++.+. ..+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|... +++++
T Consensus 251 ~~~--~~~a~------------~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 251 EQG--NSIAQ------------FRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp TTT--CHHHH------------HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HCC--CHHHH------------HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 763 33332 235666655 66666666666666544 3455666666666665 66666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 331 SIEDCNVALRIQPNYTKALLRRAVSNEKLG---RWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 331 A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
|+.+|+++++. .++.+++++|.++...| ++++|+.+|+++++. +++.++..++.+..
T Consensus 315 A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 315 AISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 66666666654 34566666666666544 566666666666655 45555555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=207.12 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=203.3
Q ss_pred HhhHHHhcCCHHHHHHHHHHHHhc----CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 54 AGNEMYRKGNFVEALKLYDKAISM----SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 54 ~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
++..+...|++++|+..|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 444455678999999999999997 3567899999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChh
Q 009096 130 GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNE 209 (543)
Q Consensus 130 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~ 209 (543)
|++++|+.+| +++++.+|.. ..++..+|.++...|+++
T Consensus 91 ~~~~~A~~~~-----------------------------------------~~al~~~~~~-~~~~~~la~~~~~~g~~~ 128 (275)
T 1xnf_A 91 GNFDAAYEAF-----------------------------------------DSVLELDPTY-NYAHLNRGIALYYGGRDK 128 (275)
T ss_dssp TCHHHHHHHH-----------------------------------------HHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHH-----------------------------------------HHHHhcCccc-cHHHHHHHHHHHHhccHH
Confidence 8888887766 4455566665 567778888888888888
Q ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 009096 210 DADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289 (543)
Q Consensus 210 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~ 289 (543)
+|+..++++++..|++...... ..+....|++++|+..+++++...|++...+ .++..+.
T Consensus 129 ~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 188 (275)
T 1xnf_A 129 LAQDDLLAFYQDDPNDPFRSLW-------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-------------NIVEFYL 188 (275)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH-------HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-------------HHHHHHT
T ss_pred HHHHHHHHHHHhCCCChHHHHH-------HHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-------------HHHHHHH
Confidence 8888888888888877432221 2234667899999999999998888876553 2567788
Q ss_pred hcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
..+++++|+..+++++...|.. +.++..+|.++...|++++|+..|++++..+|++... .+.++..+|++++|
T Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 189 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQD 265 (275)
T ss_dssp TSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhh
Confidence 8888999999999998887643 6889999999999999999999999999999977544 37788899999999
Q ss_pred HHHH
Q 009096 366 VRDY 369 (543)
Q Consensus 366 ~~~~ 369 (543)
++.+
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 8887
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-24 Score=197.69 Aligned_cols=280 Identities=13% Similarity=0.043 Sum_probs=223.9
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHH
Q 009096 55 GNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVE 133 (543)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (543)
...++..|+|++|+..+++....+|++ .++...++.+|+.+|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 345677888899988888887777776 45778888888888988888887765 25556777888888888888888
Q ss_pred HHHHHhcCCCCC-CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH
Q 009096 134 NARHHLCFPGHH-PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD 212 (543)
Q Consensus 134 ~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~ 212 (543)
+|+..+++++.. .+|.. ...++.+|..+...|++++|+..+++ |.+ ..++..+|.++..+|++++|+
T Consensus 83 ~A~~~l~~ll~~~~~P~~------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTN------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSC------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCC------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 888888887642 12221 12367778888888899999888887 444 788899999999999999999
Q ss_pred HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC
Q 009096 213 SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR 292 (543)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~ 292 (543)
..++++++.+|++...... .+| ..++...|++++|+..|++++..+|+++.++ ..+|.++...|
T Consensus 151 ~~l~~~~~~~p~~~~~~l~-~a~---~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~------------~~la~~~~~~g 214 (291)
T 3mkr_A 151 KELKKMQDQDEDATLTQLA-TAW---VSLAAGGEKLQDAYYIFQEMADKCSPTLLLL------------NGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHH-HHH---HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH------------HHHHHHHHHTT
T ss_pred HHHHHHHhhCcCcHHHHHH-HHH---HHHHhCchHHHHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHcC
Confidence 9999999998886321111 122 2344466999999999999999999998875 34799999999
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN-SIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
++++|+..|+++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+. ....+.+.|+++..-|
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999976 5789999999999999765 3456666677766654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=191.09 Aligned_cols=186 Identities=12% Similarity=0.044 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+..+..+|.++...|++++|+..|+++++.+|+++..+ ..+|.++...|++++|+..|+++++++|++..++.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~- 77 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEAL------YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM- 77 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-
Confidence 56788899999999999999999999999999996644 44499999999999999999999999999998863
Q ss_pred HHhHHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 272 LTNVKMVVRARTRGNNLFSS-----------RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+|.++... |++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++
T Consensus 78 -----------~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 78 -----------VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp -----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 478899999 9999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++ +++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+...+++.
T Consensus 147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----
T ss_pred cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99 99999999999999999999999999999999999999998888776666543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=189.28 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=185.8
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+|.++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467889999999999999999999999999998 7788999999999999 999999999999999875 78888
Q ss_pred HHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009096 120 QRLASLYFR----LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLV 195 (543)
Q Consensus 120 ~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 195 (543)
+.+|.++.. .+++++|+.+|+ ++++.+ .+.++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~-----------------------------------------~a~~~~---~~~a~ 113 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYS-----------------------------------------KACDLK---YAEGC 113 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHH-----------------------------------------HHHHTT---CHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHH-----------------------------------------HHHHcC---CccHH
Confidence 889988887 777766666653 333321 13333
Q ss_pred HHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 196 ACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 196 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
..+ |.++.. .+++++|+.+|+++++.. +..++
T Consensus 114 ~~l----------------------------------------g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~-- 149 (273)
T 1ouv_A 114 ASL----------------------------------------GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC-- 149 (273)
T ss_dssp HHH----------------------------------------HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH--
T ss_pred HHH----------------------------------------HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH--
Confidence 433 455555 667777777777777765 23332
Q ss_pred HHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCC
Q 009096 272 LTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 343 (543)
..+|.++.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++..|
T Consensus 150 ----------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 150 ----------TILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp ----------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 347888888 89999999999999887 457889999999999 9999999999999998865
Q ss_pred CCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHH
Q 009096 344 NYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 344 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+.+++.+|.++.. .+++++|+.+|++++++.|++...
T Consensus 218 --~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 218 --GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp --HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred --HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999 999999999999999998865443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=189.32 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=62.9
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999988888888777777
Q ss_pred HHHhCCHHHHHHHh
Q 009096 126 YFRLGQVENARHHL 139 (543)
Q Consensus 126 ~~~~g~~~~A~~~~ 139 (543)
+...|++++|+..|
T Consensus 101 ~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 101 YVVKEMYKEAKDMF 114 (243)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 77777666666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=182.65 Aligned_cols=173 Identities=15% Similarity=0.139 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+.+|+.+|.++...|++++|+..|+++++.+|++... +..+|.++...|++++|+..+.+++...|++..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET------LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 36788999999999999999999999999999998554 445599999999999999999999999999988763
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
.+|.++...++++.|+..+.+++..+|++..++..+|.++..+|++++|+..|+++++++|+++.+++
T Consensus 78 ------------~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 145 (184)
T 3vtx_A 78 ------------ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ 145 (184)
T ss_dssp ------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++|.++..+|++++|+.+|+++++++|+++.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999997654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=177.72 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=149.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+|.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred HHHHHh-CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 124 SLYFRL-GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 124 ~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
.++... |++++|+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~--------------------------------------------------------------- 100 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYF--------------------------------------------------------------- 100 (225)
T ss_dssp HHHHTTTCCHHHHHHHH---------------------------------------------------------------
T ss_pred HHHHHhcCcHHHHHHHH---------------------------------------------------------------
Confidence 555554 4444444433
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~ 280 (543)
++++. ..|.+..++
T Consensus 101 -----------------------------------------------------~~~~~~~~~~~~~~~~----------- 116 (225)
T 2vq2_A 101 -----------------------------------------------------DKALADPTYPTPYIAN----------- 116 (225)
T ss_dssp -----------------------------------------------------HHHHTSTTCSCHHHHH-----------
T ss_pred -----------------------------------------------------HHHHcCcCCcchHHHH-----------
Confidence 33333 223333332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP-NYTKALLRRAVSNEKL 359 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~ 359 (543)
..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++...| ++..++..++.++...
T Consensus 117 -~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 117 -LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 23577777888888888888888888888888888888888888888888888888888888 8888888888888888
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 360 GRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
|++++|..+++.+++.+|+++.+...+
T Consensus 196 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 196 GNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 888888888888888888888776544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=190.83 Aligned_cols=215 Identities=10% Similarity=0.056 Sum_probs=181.9
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...++.+|..+...|++++|+..++++++.+|.. ..++..+|.++...|++++|+..++++++..|.+.. .+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~ 95 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSAAT------AYY 95 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH------HHH
Confidence 4457788999999999999999999999999887 788999999999999999999999999999998754 344
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
.+|.++...|++++|+..++++++..|++..++ ..+|.++...|++++|+..++++++..|+++.++.
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 163 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF------------YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF 163 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHH
Confidence 559999999999999999999999999998765 34799999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 317 NRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 317 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+..+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=206.73 Aligned_cols=223 Identities=19% Similarity=0.168 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCC
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTALGRL-TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (543)
+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|..+|.+|..+|++++|+.+|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~--- 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF--- 160 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH---
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---
Confidence 55566666666666677777777777777777777 77777777777777777777777777776666666665554
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC
Q 009096 143 GHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE 222 (543)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 222 (543)
+++++.+|+ ..++..+|.++...+.
T Consensus 161 --------------------------------------~~al~~~p~--~~~~~~lg~~~~~~~~--------------- 185 (474)
T 4abn_A 161 --------------------------------------SGALTHCKN--KVSLQNLSMVLRQLQT--------------- 185 (474)
T ss_dssp --------------------------------------HHHHTTCCC--HHHHHHHHHHHTTCCC---------------
T ss_pred --------------------------------------HHHHhhCCC--HHHHHHHHHHHHHhcc---------------
Confidence 333444443 2344444444433211
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc--------CCH
Q 009096 223 HYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS--------RRY 294 (543)
Q Consensus 223 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~--------~~~ 294 (543)
+......|++++|+..|+++++++|++..++. .+|.++... |++
T Consensus 186 ----------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 186 ----------------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWY------------ILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHTTCCHHHH
T ss_pred ----------------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHHHHhhccccchH
Confidence 00112238999999999999999999988763 478888888 999
Q ss_pred HHHHHHHHHHhccCC---CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDS---YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 295 ~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 371 (543)
++|+..|+++++++| +++.+|+++|.+|..+|++++|+..|+++++++|+++.++..++.++..+|++++|+..+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999987765
Q ss_pred H
Q 009096 372 L 372 (543)
Q Consensus 372 a 372 (543)
.
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=190.37 Aligned_cols=270 Identities=10% Similarity=-0.067 Sum_probs=182.0
Q ss_pred cCHHHHHHHhhHHHhc----CCH----HHHHHHHHHHHhcCCcchhhHHhHHHHHHH-------cCCH-------HHHHH
Q 009096 46 VDAEEVKRAGNEMYRK----GNF----VEALKLYDKAISMSPENAAYRSNRAATLTA-------LGRL-------TEAVS 103 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~ 103 (543)
.....|......-... ++. ++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3445555555544332 233 789999999999999999999999998874 5886 89999
Q ss_pred HHHHHHh-cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 104 DCEEAVR-LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 104 ~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
.|+++++ ++|++..+|..+|.++...|++++|...| ++
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~-----------------------------------------~~ 124 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY-----------------------------------------NR 124 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH-----------------------------------------HH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------------------HH
Confidence 9999999 69999999999998888877777776665 45
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHH-hhcChHHHHHHHHHHhhc
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNI-SELRFENAVSSAEKAGLL 261 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~ 261 (543)
+++..|.+...+|..++.++...|++++|+..|+++++..|.....+. ..+.+.. ..|++++|...|+++++.
T Consensus 125 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 125 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV------TAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHH------HHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555556553336777777777777777777777777777776533222 2233322 257777777777777777
Q ss_pred CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-ChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 262 DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY---DSY-NSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 262 ~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+|+++.++. .+|..+...|++++|+..|++++.. .|+ ...+|..++..+...|++++|...+++
T Consensus 199 ~p~~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 199 YGDIPEYVL------------AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HTTCHHHHH------------HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCcHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766642 2466667777777777777777764 342 456677777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+++..|++..... .+.+ ..-.+.+.++|+++.....|
T Consensus 267 a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 267 RFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp HHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred HHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 7777776443221 1111 11115566677777665544
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=162.73 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=93.1
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+.|.+.+. .+++++++||++||++|+.+.|.++++++.++++.|++||++++++++++|+|.++||+++|+|
T Consensus 3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 45667778888774 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.++++|.++|++++
T Consensus 83 G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 83 GQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHC
T ss_pred CEEEEEEeCcCHHHHHHHHHhcC
Confidence 99999999999999999999763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-24 Score=214.55 Aligned_cols=294 Identities=15% Similarity=0.067 Sum_probs=230.2
Q ss_pred cCCCCCCCCccccccccC----HHHHHHHhhHHHhcCCHHHHHHHHHHHHhc------CCcchhhHHhHHHHHHHcCCHH
Q 009096 30 SNINNNNNNVKTSNVAVD----AEEVKRAGNEMYRKGNFVEALKLYDKAISM------SPENAAYRSNRAATLTALGRLT 99 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~ 99 (543)
...|...+++++...|.+ +..+..+|.+++..|++++|+.+|++++.. .|....++..+|.++...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 104 (406)
T 3sf4_A 25 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFD 104 (406)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHH
Confidence 345677777777778877 468899999999999999999999999887 3455789999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------hhHHHHHHHHHHHhCC--------------------HHHHHHHhcCCCCCCChHHHhH
Q 009096 100 EAVSDCEEAVRLDPGY------NRAHQRLASLYFRLGQ--------------------VENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 100 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
+|+..+++++++.|.. ..++..+|.++...|+ +++|+..+.+++.
T Consensus 105 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------- 175 (406)
T 3sf4_A 105 EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS--------- 175 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH---------
Confidence 9999999999987654 4589999999999999 6666665544321
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL 233 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 233 (543)
.+.+. .++.....++..+|.++...|++++|+..++++++..+..........
T Consensus 176 -------------------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 176 -------------------------LVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp -------------------------HHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 00000 001111345677888888888888888888888877776655555566
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-- 311 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-- 311 (543)
.+..+|.++...|++++|+..+++++.+.|...... .....+..+|.++...|++++|+.+|+++++..+..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 778889999999999999999999997765432111 012224568999999999999999999999875443
Q ss_pred ----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHccCHHHH
Q 009096 312 ----SILYCNRAICWSKMGLWENSIEDCNVALRIQP------NYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 312 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 365 (543)
..++..+|.++..+|++++|+.+|++++++.+ ....++..+|.++...|+...+
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 67899999999999999999999999998843 3367899999999999987543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=182.73 Aligned_cols=211 Identities=14% Similarity=0.013 Sum_probs=194.7
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
...++.+|..+...|++++|+..++++++.+|.. ..++..+|.++...|++++|+..++++++..|.+.. .+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR------VLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------HHH
Confidence 5668889999999999999999999999999887 788999999999999999999999999999998744 344
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhh--cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 237 LKLMFNISELRFENAVSSAEKAGL--LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
.+|.++...|++++|+..+++++. ..|.+..++ ..+|.++...|++++|+..|+++++..|.+..+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF------------ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSV 177 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHH
Confidence 559999999999999999999999 777766654 347999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
+..+|.++...|++++|+..++++++..|++..++..++.++...|++++|..++++++++.|+++.+...+
T Consensus 178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-22 Score=180.76 Aligned_cols=219 Identities=14% Similarity=0.036 Sum_probs=181.7
Q ss_pred cccccC-HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 42 SNVAVD-AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 42 ~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
..+|.+ +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 455665 8889999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++...|++++|+..|+++ +. .+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-----------------------------------------~~-~~------------ 135 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-----------------------------------------SQ-DT------------ 135 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------------------------------------TT-CT------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------------------------------------Hh-Cc------------
Confidence 8888887777777776665332 22 01
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
..|.+ ...+..+|.++...|++++|+..+++++...|.+..++
T Consensus 136 --------------------~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------- 178 (252)
T 2ho1_A 136 --------------------LYPER------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA----------- 178 (252)
T ss_dssp --------------------TCTTH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH-----------
T ss_pred --------------------cCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHH-----------
Confidence 12222 12344458888889999999999999999999887765
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
..+|.++...|++++|+..|+++++..|.+..++..++.++...|++++|...++++++..|+++.+...+
T Consensus 179 -~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999998776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=198.03 Aligned_cols=315 Identities=10% Similarity=-0.073 Sum_probs=244.2
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhH--HhH--HHHHHHcCCHHHHH-----------HHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYR--SNR--AATLTALGRLTEAV-----------SDC 105 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~ 105 (543)
.+......++....++..+++++|...++++.+.-+ .+.... +.+ .......++++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 445667777888888999999999999999866422 233332 222 22333344555554 555
Q ss_pred HHHHhcCCCChh------HHHHHHHHHHHhCCHHHHHHHhcCCCCC----CChHHHhHHHHHHHHHHHHHhhhhcCCHHH
Q 009096 106 EEAVRLDPGYNR------AHQRLASLYFRLGQVENARHHLCFPGHH----PDPNELLKLQSFEKHLNRCAESRKIGDWKT 175 (543)
Q Consensus 106 ~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (543)
++.- ..|.... .++.+|.++...|++++|+..|++++.. +++. .....+..+|.++...|++++
T Consensus 88 ~~i~-~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 88 LEID-KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-----EKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHH-HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHH-hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHHHHHHcCCHHH
Confidence 5532 2333333 3445999999999999999999999872 2222 345678999999999999999
Q ss_pred HHHHHHHHHHcCCCCC------HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 176 VLRETDAAIAIGVDSS------PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
|+..+.++++..+... ..++..+|.++..+|++++|+..++++++..+..........++.++|.++...|+++
T Consensus 162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999855442 3578889999999999999999999999988777666666677888899999999999
Q ss_pred HHHHHHHHHhhc-----C-CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----CCChhHHhHH
Q 009096 250 NAVSSAEKAGLL-----D-YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-----SYNSILYCNR 318 (543)
Q Consensus 250 ~A~~~~~~al~~-----~-p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l 318 (543)
+|+.+|++++.+ + |....+ +..+|.++...|++++|+.++++++++. |.....+..+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQA------------YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999984 4 444333 2458999999999999999999999874 3334446779
Q ss_pred HHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 319 AICWSKMGL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 319 a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|..+|++++++..
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999 88888888876 33445567899999999999999999999999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=197.96 Aligned_cols=303 Identities=11% Similarity=-0.035 Sum_probs=232.5
Q ss_pred HHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 71 YDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++. .|+..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 678999999999999999984 7899999999999999999999999999999999999999999999999998 55544
Q ss_pred HHhHHHH---------------HHHHH------------------HHHHhhh---------hcCCHHHHHHHHHHHHHcC
Q 009096 150 ELLKLQS---------------FEKHL------------------NRCAESR---------KIGDWKTVLRETDAAIAIG 187 (543)
Q Consensus 150 ~~~~~~~---------------~~~~~------------------~~~~~~~---------~~~~~~~A~~~~~~~l~~~ 187 (543)
.+..... +...+ ..+.... ..|+++.|...|+++++ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 3322211 00111 1111111 26789999999999998 4
Q ss_pred CCCCH-HHHHHHHHHH-------------HHccChhHHH-----------------------------------------
Q 009096 188 VDSSP-QLVACKAEAH-------------LKLHQNEDAD----------------------------------------- 212 (543)
Q Consensus 188 p~~~~-~~~~~~a~~~-------------~~~~~~~~A~----------------------------------------- 212 (543)
|.... ..+....... ...+++.+|.
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 65432 2222111110 0122333343
Q ss_pred -------------------HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHh-------hcChH-------HHHHHHHHHh
Q 009096 213 -------------------SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS-------ELRFE-------NAVSSAEKAG 259 (543)
Q Consensus 213 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~g~~~-------~A~~~~~~al 259 (543)
..|++++...|.++. .|+..|..+.. .|+++ +|+..|++++
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~------~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPD------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 344444444444433 34444777765 68887 8999999999
Q ss_pred h-cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh-hHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 260 L-LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS-ILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 260 ~-~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+ ..|++..++. .+|..+...|++++|...|+++++..|.++ .+|..+|.++.+.|++++|+..|++
T Consensus 314 ~~~~p~~~~l~~------------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 314 STLLKKNMLLYF------------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp TTTCSSCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7 7999888764 368889999999999999999999999985 6999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVS-NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+++..|.....+...+.+ +...|++++|...|+++++.+|+++.++..+......+
T Consensus 382 Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 382 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 999999888888877766 34689999999999999999999999998777665443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=183.09 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=199.3
Q ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCC-hhHHHHHH
Q 009096 156 SFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP-PSQVKFLV 234 (543)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ 234 (543)
....+..+|..+...|++++|+..++++++.+ ..+.++..+|.++...|++++|+..++++++..|.+. ........
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999998 4478899999999999999999999999999888763 22222456
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
+..+|.++...|++++|+..|++++.+.|. +.++...|++++|+..+++++..+|.++.+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 777799999999999999999999999887 234667788999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.+...++
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred hhhh
Q 009096 395 KSRG 398 (543)
Q Consensus 395 ~~~~ 398 (543)
+...
T Consensus 222 ~~~~ 225 (258)
T 3uq3_A 222 EYAS 225 (258)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 5443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=174.75 Aligned_cols=174 Identities=17% Similarity=0.096 Sum_probs=150.7
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
+++..|+.+|.++...|+|++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 126 YFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
+...++++.|...+ .+++...|.+ ..++..+|.++..+
T Consensus 83 ~~~~~~~~~a~~~~-----------------------------------------~~a~~~~~~~-~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDAL-----------------------------------------QRAIALNTVY-ADAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHH-----------------------------------------HHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHH-----------------------------------------HHHHHhCccc-hHHHHHHHHHHHHh
Confidence 98888887777665 4555666665 67777888888888
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|++++|+..|+++++.+|.++. ++..+|.++..+|++++|+..|+++++++|+++.
T Consensus 121 g~~~~A~~~~~~~l~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPGFIR------AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCchhHHHHHHHHHHhcchhhh------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888754 3444488888889999999999999888887654
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-24 Score=167.35 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=90.7
Q ss_pred hhhhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCC-C-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYP-Y-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~-~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|++.+..+++++|+||++| |++|+++.|.|++++++|+ . ++|++||+|++++++.+|||+++||+++|+||+
T Consensus 23 t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~ 102 (140)
T 2qgv_A 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGN 102 (140)
T ss_dssp CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTE
T ss_pred CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 34667776667889999999999 9999999999999999996 4 899999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
++.+++|+ +++++.++|++++..+..
T Consensus 103 ~v~~~~G~~~k~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 103 YRGVLNGIHPWAELINLMRGLVEPQQE 129 (140)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHC----
T ss_pred EEEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 99999999 999999999988754433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=189.36 Aligned_cols=235 Identities=10% Similarity=-0.083 Sum_probs=191.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHH
Q 009096 87 NRAATLTALGRLTEAVSDCEEAVRLD----PGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLN 162 (543)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 162 (543)
.++..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~------------------------ 65 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARND------------------------ 65 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH------------------------
T ss_pred ceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHH------------------------
Confidence 33444455677888888888888763 34456666666666666666655554
Q ss_pred HHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHH
Q 009096 163 RCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFN 242 (543)
Q Consensus 163 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 242 (543)
++++++.+|.. ..++..+|.++...|++++|+..|+++++.+|.+...+ ..+|.++
T Consensus 66 -----------------~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~la~~~ 121 (275)
T 1xnf_A 66 -----------------FSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH------LNRGIAL 121 (275)
T ss_dssp -----------------HHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH------HHHHHHH
T ss_pred -----------------HHHHHHcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH------HHHHHHH
Confidence 46677777776 78899999999999999999999999999999986644 4449999
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHH
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICW 322 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 322 (543)
...|++++|+..|+++++.+|++...... .......|++++|+..+++++...|.+...+. ++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~ 187 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLW-------------LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFY 187 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------------HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHH-------------HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHH
Confidence 99999999999999999999999865422 22346679999999999999999998876654 78888
Q ss_pred HHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 323 SKMGLWENSIEDCNVALRIQPN----YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
...++.++|+..+++++...|. ++.+++.+|.++...|++++|+.+|+++++++|++....
T Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 8899999999999999988774 378999999999999999999999999999999886644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=175.78 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=91.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC-cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSP-ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLA 123 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (543)
+.+++.++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45779999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHhcCC
Q 009096 124 SLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~a 142 (543)
.++..+|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 9999998888888776443
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=164.13 Aligned_cols=99 Identities=10% Similarity=0.146 Sum_probs=89.8
Q ss_pred EeehhhhhhhccCCC-CceeeeeeCCCC--ccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 412 EISSLEKFKAAISSP-GVSLVHFKEASS--EKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 412 ~~~~~~~~~~~i~~~-~~~lv~f~~~~c--~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.+++ +.|++.+... ++++|+||++|| ++|+++.|.+++++++|++ ++|++||+|++++++.+|||+++||+++|+
T Consensus 19 ~vt~-~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFk 97 (137)
T 2qsi_A 19 LVDE-ATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQ 97 (137)
T ss_dssp EECT-TTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEE
T ss_pred ccCH-hHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 3444 6666666454 499999999999 9999999999999999975 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
||+++.+++|+ +++++.++|++++
T Consensus 98 dG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 98 PERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999 9999999999876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=199.44 Aligned_cols=304 Identities=13% Similarity=-0.010 Sum_probs=179.5
Q ss_pred HHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 53 RAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRL---TEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 53 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.+|..+++.|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 4566667777777777777776554 3566667777777766666 6777777777654 556667777755555
Q ss_pred C-----CHHHHHHHhcCCCCCCChHHHhHHH--------------------------HHHHHHHHHHhhhhcCCHHHHHH
Q 009096 130 G-----QVENARHHLCFPGHHPDPNELLKLQ--------------------------SFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 130 g-----~~~~A~~~~~~a~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
+ ++++|+.+|++++...++.....+. .....+.++..+...+.+++++.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 4 6667777776665522222111110 11234555666666665544444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcc---ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh----cChHHH
Q 009096 179 ETDAAIAIGVDSSPQLVACKAEAHLKLH---QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE----LRFENA 251 (543)
Q Consensus 179 ~~~~~l~~~p~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----g~~~~A 251 (543)
......+......+.+++.+|.+|...| ++++|+..|+++.+..+...... +.+|.+|... +++++|
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~------~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV------DSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH------HHHHHHHTCGGGSSCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCCCHHHH
Confidence 4333332222222347777888888888 78888888888887777763322 3336666555 678888
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc--
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN-L--FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG-- 326 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 326 (543)
+.+|+++. |+++.++ +++|.+ + ...+++++|+.+|+++.+. .++.+++++|.+|. .|
T Consensus 237 ~~~~~~aa---~g~~~a~------------~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 237 QALLEKIA---PGYPASW------------VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp HHHHHHHG---GGSTHHH------------HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred HHHHHHHc---CCCHHHH------------HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 88888876 6666664 335766 3 4577888888888887754 46778888888887 45
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 327 ---LWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 327 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
++++|+.+|+++. |.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+...|+.+.
T Consensus 299 ~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLF 364 (452)
T ss_dssp SCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 8888888888887 7788888888877776 34788888888888764 4556655565543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=182.56 Aligned_cols=239 Identities=12% Similarity=-0.004 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
++|+..|++++..+|+++.+|+.+|..+...++. + ...+......+.+++|+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~------l---------------------~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL------L---------------------AEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------H---------------------HHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh------h---------------------hhccchhhcccchHHHHH
Confidence 7899999999999999999999999998765321 0 000000011233478899
Q ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 179 ETDAAIA-IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 179 ~~~~~l~-~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
.|+++++ +.|++ ..+|..+|.++...|++++|...|+++++..|.+... .|...|.++...|++++|...|++
T Consensus 86 ~~~rAl~~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 86 IYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-----VYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHTTTTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-----HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhCccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccH-----HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999 67776 7889999999999999999999999999999988641 445558999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLF-SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 336 (543)
+++..|.+..++. ..+.... ..|++++|+..|+++++.+|+++.+|..+|..+...|++++|+..|+
T Consensus 160 a~~~~p~~~~~~~------------~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 160 AREDARTRHHVYV------------TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHTSTTCCTHHHH------------HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhcCCCCHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998876652 1233322 37999999999999999999999999999999999999999999999
Q ss_pred HHHhh---CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 337 VALRI---QPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 337 ~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+++.. .|+ ...+|..++..+...|++++|...++++++..|++...
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 99995 553 78899999999999999999999999999999986644
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=167.71 Aligned_cols=105 Identities=10% Similarity=0.130 Sum_probs=95.5
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+...|++.+ ..+++++|+||++||+||+++.|.|+++++++++ +.|++||+|++++++.+|+|+++||+++|
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 56678888888776 4688999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeEE--E-------EEcCC-C-HHHHHHHHHhcCCCC
Q 009096 487 KNGEKL--K-------EMINP-S-HQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~--~-------~~~g~-~-~~~~~~~~~~~~~~~ 514 (543)
++|+.+ + +++|+ + +++|.++|+.+....
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 999998 5 89998 5 999999999876444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=180.47 Aligned_cols=216 Identities=7% Similarity=0.028 Sum_probs=179.0
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..++..|..+...|++++|+..|+++++.+|......++.+|.++...|++++|+..++++++.+|.+.. .+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~ 81 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------AYIG 81 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------HHHH
Confidence 5678889999999999999999999999988344677777999999999999999999999999888644 4455
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--ChhHH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--NSILY 315 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 315 (543)
+|.++...|++++|+..|+++++.+|+++.....+ +..+..+|.++...|++++|+..|+++++.+|+ ++.++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 59999999999999999999999999988765433 335778899999999999999999999999999 88999
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.++|.+|...| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|+++.+...+..+..
T Consensus 157 ~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 157 YSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999997655 445677777777765444 4555667788999999999999999999999888876643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=198.01 Aligned_cols=207 Identities=12% Similarity=0.036 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCh-hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHH
Q 009096 172 DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQN-EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFEN 250 (543)
Q Consensus 172 ~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 250 (543)
.+++++..+++.....|.. ..+++.+|.++...|++ ++|+..|+++++.+|++.. ++..+|.++...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~~~-a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVE-AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------AWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCchh-HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHH
Confidence 4567777888877777655 88999999999999999 9999999999999999855 45555999999999999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS---------RRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
|+..|+++++++|+ ..++ ..+|.++... |++++|+..|+++++++|+++.+|+++|.+
T Consensus 156 A~~~~~~al~~~p~-~~~~------------~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSL------------QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHH------------HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-HHHH------------HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999 4443 3479999999 999999999999999999999999999999
Q ss_pred HHHc--------cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 322 WSKM--------GLWENSIEDCNVALRIQP---NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 322 ~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|..+ |++++|+..|+++++++| +++.+|+++|.++..+|++++|+..|+++++++|+++.++..+..+.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999 999999999999999999 99999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhh
Q 009096 391 VALKKSRG 398 (543)
Q Consensus 391 ~~l~~~~~ 398 (543)
..+++...
T Consensus 303 ~~lg~~~e 310 (474)
T 4abn_A 303 EFLSRLTS 310 (474)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=198.75 Aligned_cols=272 Identities=12% Similarity=0.005 Sum_probs=208.3
Q ss_pred CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHH
Q 009096 79 PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN----RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154 (543)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 154 (543)
+.....++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------- 114 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT---------- 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------
Confidence 44567788999999999999999999999999999986 5889999999999999999999876643
Q ss_pred HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
...+. . ++.....++..+|.++...|++++|+..+++++...+...........
T Consensus 115 ------------------------~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 115 ------------------------LAKSM-N-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp ------------------------HHHHT-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ------------------------HHHHc-c-CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 00000 0 000113455666777777777777777777766654333333344556
Q ss_pred HHHHHHHHHhhcC-----------------hHHHHHHHHHHhhcCCC---cHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 235 WLLKLMFNISELR-----------------FENAVSSAEKAGLLDYS---NVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 235 ~~~~a~~~~~~g~-----------------~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
+..+|.++...|+ +++|+..+++++.+.+. .... ...+..+|.++...|++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ---------GRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHHHHHHHcCCh
Confidence 7777999999999 99999999998865432 2222 12245689999999999
Q ss_pred HHHHHHHHHHhccCCCChh------HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCH
Q 009096 295 SEACSAYGEGLKYDSYNSI------LYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRW 362 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 362 (543)
++|+.+|++++++.+.... ++.++|.++...|++++|+..|++++.+.|.. ..++..+|.++...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998775544 89999999999999999999999999987754 67899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHHHh
Q 009096 363 SEAVRDYEALRRELPGDN------EVAESLHNAQVALKK 395 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~l~~ 395 (543)
++|+.+|++++++.+... .+...++.+...+++
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 999999999999866432 245555555554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-21 Score=189.08 Aligned_cols=327 Identities=12% Similarity=0.031 Sum_probs=237.4
Q ss_pred ccccccccccccccc----CCCCCCCCccccccccCHHHHHHHhhHHHhcC-----CHHHHHHHHHHHHhcCCcchhhHH
Q 009096 16 TGNYGHGSIVRSCSS----NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG-----NFVEALKLYDKAISMSPENAAYRS 86 (543)
Q Consensus 16 ~~~~g~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~ 86 (543)
...+..|.+....+. ..|...++++... ++++++.+|..+...| ++++|+.+|+++++. .++.+++
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~ 110 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLI 110 (452)
T ss_dssp TGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence 344444444443333 4688888888855 7889999999777766 889999999999985 4566999
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhCCHHHHHH----HhcCCCCCCChHHHhHHHHHHHHH
Q 009096 87 NRAATLTALGRLTEAVSDCEEAVRLD-PGYNRAHQRLASLYFRLGQVENARH----HLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~----~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
.+|.+|...+...++.+.++...... +.++.+++.+|.+|...+.++++.. +++.+.. .++. .++
T Consensus 111 ~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~ 180 (452)
T 3e4b_A 111 PLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYV 180 (452)
T ss_dssp HHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHH
Confidence 99999999877655544444433322 4568899999999999996555444 4444433 2222 367
Q ss_pred HHHHhhhhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 162 NRCAESRKIG---DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL----HQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 162 ~~~~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
.++.++...| ++++|+..|+++.+.+|.. ...++.+|.+|... +++++|+.+|+++. |.++.....+
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L-- 254 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL-- 254 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH--
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH--
Confidence 7888888899 9999999999999998876 56668889999766 79999999999998 7777765555
Q ss_pred HHHHHHH-H--HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhc
Q 009096 235 WLLKLMF-N--ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-----RYSEACSAYGEGLK 306 (543)
Q Consensus 235 ~~~~a~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~ 306 (543)
|.+ + ...+++++|+.+|+++.+.. ++.+. ..+|.+|. .| ++++|+.+|+++.
T Consensus 255 ----g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~------------~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 255 ----AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAE------------LLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp ----HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHH------------HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHH------------HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 777 4 56899999999999998654 55553 34788888 55 9999999999999
Q ss_pred cCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCC
Q 009096 307 YDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 378 (543)
+.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++++|..+|+++.+..+
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~- 389 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT- 389 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-
Confidence 8999999999999987 4599999999999987 4678999999999985 4699999999999998764
Q ss_pred ChHHHHHHHHH
Q 009096 379 DNEVAESLHNA 389 (543)
Q Consensus 379 ~~~~~~~l~~~ 389 (543)
+.+...+..+
T Consensus 390 -~~a~~~l~~l 399 (452)
T 3e4b_A 390 -PEANDLATQL 399 (452)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-22 Score=187.83 Aligned_cols=270 Identities=14% Similarity=0.015 Sum_probs=209.2
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY----NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSF 157 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 157 (543)
...++..|.++...|++++|+..|+++++..|++ ..++..+|.++...|++++|+..+++++.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------- 71 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT------------- 71 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 4567889999999999999999999999999998 46788999999999999999998866542
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..... . ++.....++..+|.++...|++++|+..++++++..+...........+..
T Consensus 72 ---------------------~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 128 (338)
T 3ro2_A 72 ---------------------LARTI-G-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128 (338)
T ss_dssp ---------------------HHHHH-T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------Hhhcc-c-ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 00000 0 001114456667778888888888888888777766655554455567777
Q ss_pred HHHHHHhhcC--------------------hHHHHHHHHHHhhcCCC---cHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 238 KLMFNISELR--------------------FENAVSSAEKAGLLDYS---NVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 238 ~a~~~~~~g~--------------------~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
+|.++...|+ +++|+..+++++...+. .... ...+..+|.++...|++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQ---------GRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHH---------HHHHHHHHHHHHHhCCH
Confidence 8999999999 99999999998865322 2221 12245689999999999
Q ss_pred HHHHHHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCH
Q 009096 295 SEACSAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRW 362 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 362 (543)
++|+..++++++..+.. ..++..+|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 99999999999876543 3489999999999999999999999999887655 67899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHhh
Q 009096 363 SEAVRDYEALRRELPGD------NEVAESLHNAQVALKKS 396 (543)
Q Consensus 363 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~ 396 (543)
++|+.++++++++.|.. ..+...++.+...+++.
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 99999999999987653 22444555555555433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=189.78 Aligned_cols=265 Identities=11% Similarity=0.026 Sum_probs=169.2
Q ss_pred ccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 39 VKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 39 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
.....+|..+..+..+|..+...|++++|+.+|++++++ .|....++..+|.++...|++++|+..+++++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999999995 677789999999999999999999999999998
Q ss_pred c--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 111 L--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 111 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
. .|....++..+|.++...|++++|+.+|++++. .+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------------------------------~~~~ 143 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE----------------------------------IREK 143 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----------------------------------HHHH
Confidence 7 355678899999999999999999998866543 1111
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCC--ChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 183 AIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYS--PPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 183 ~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
....++.....++..+|.++...|++++|+..+++++...... .........+..+|.++...|++++|+..+++++.
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111111123445566667777777777777766665541100 00112234556668888889999999999988886
Q ss_pred cCCCc---------HHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 261 LDYSN---------VEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 261 ~~p~~---------~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
..|.. ...+.. ...+...+..+...+.+.+|+..+.+++...|..+.++..+|.+|...|++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMH------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHHHHHHC------CCHHHH------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCCCCcchHHHHHH------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHH
Confidence 54321 111110 111222344444455555555566666555555566666666666666666666
Q ss_pred HHHHHHHHhhCC
Q 009096 332 IEDCNVALRIQP 343 (543)
Q Consensus 332 ~~~~~~al~~~p 343 (543)
+.+|++++++.|
T Consensus 298 ~~~~~~al~l~~ 309 (311)
T 3nf1_A 298 ETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 666666665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=207.05 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+.++.++|.++..+|++++|+..|+++++++|++.. ++.++|.++..+|++++|+..|+++++++|++..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~-- 80 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-- 80 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--
Confidence 678888999999999999999999999999999855 445559999999999999999999999999999885
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
.++|.++..+|++++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++.+
T Consensus 81 ----------~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 81 ----------SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp ----------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
+|.++..+|++++|.+.+++++++.|+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999987654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=203.46 Aligned_cols=175 Identities=22% Similarity=0.219 Sum_probs=142.1
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
...|.++++++++|.++..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009096 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA 201 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~ 201 (543)
+|.++..+|++++|+..|+ ++++++|++ ..++.++|.+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~-----------------------------------------kAl~l~P~~-~~a~~~Lg~~ 120 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYT-----------------------------------------RAIQINPAF-ADAHSNLASI 120 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----------------------------------------HHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH-----------------------------------------HHHHhCCCC-HHHHHHHHHH
Confidence 9999999998888887764 455556655 5666667777
Q ss_pred HHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC
Q 009096 202 HLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS 264 (543)
Q Consensus 202 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 264 (543)
+..+|++++|+..|+++++++|++... +.++|.++..+|++++|++.+++++++.|+
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a------~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFPDA------YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHH------HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHH------HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 777777777777777777777766443 333367777777777777777777665443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=173.40 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--- 115 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 115 (543)
...|.+++.++.+|..++..|+|++|+..|+++++.+|++ +.+++.+|.+|+.+|++++|+..|+++++..|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788999999999999999999999999999998888 8889999999999999999999999999988754
Q ss_pred hhHHHHHHHHHHHh
Q 009096 116 NRAHQRLASLYFRL 129 (543)
Q Consensus 116 ~~~~~~la~~~~~~ 129 (543)
+.+++.+|.++...
T Consensus 89 ~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 89 PQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=167.66 Aligned_cols=252 Identities=13% Similarity=0.016 Sum_probs=202.1
Q ss_pred HHHHHhhHHHhcCCH-HHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 50 EVKRAGNEMYRKGNF-VEALKLYDKAISMSPENAAYRSNRAATLTALG--RLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+......++.|.+ ++|+.++.++|.++|++..+|+.++.++..+| ++++++..+.+++..+|++..+|..++.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 344444555566666 69999999999999999999999999999999 999999999999999999999999999887
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
...... . ...+++++++..++++++.+|.+ ..
T Consensus 114 ~~~~~~------l----------------------------~~~~~~~~EL~~~~~~l~~~pkn-y~------------- 145 (306)
T 3dra_A 114 GQIMEL------N----------------------------NNDFDPYREFDILEAMLSSDPKN-HH------------- 145 (306)
T ss_dssp HHHHHH------T----------------------------TTCCCTHHHHHHHHHHHHHCTTC-HH-------------
T ss_pred HHHHHh------c----------------------------cccCCHHHHHHHHHHHHHhCCCC-HH-------------
Confidence 331000 0 00134455556666666666655 33
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH--HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE--NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
+|..++.+....|.++ ++++.++++++.+|.+..+|.. +
T Consensus 146 ---------------------------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~------------R 186 (306)
T 3dra_A 146 ---------------------------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH------------R 186 (306)
T ss_dssp ---------------------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH------------H
T ss_pred ---------------------------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH------------H
Confidence 4444455555566665 7888888888888888888643 5
Q ss_pred HHHHHhcCC------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH-HHHHHHHHHhhC---CCCHHHHHHHHH
Q 009096 285 GNNLFSSRR------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN-SIEDCNVALRIQ---PNYTKALLRRAV 354 (543)
Q Consensus 285 g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~ 354 (543)
+.++...++ ++++++++.+++..+|++..+|+.++.++...|+... ...++.+++.++ |.++.++..++.
T Consensus 187 ~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 187 FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 777777776 9999999999999999999999999999999998555 556888888776 889999999999
Q ss_pred HHHHccCHHHHHHHHHHHHh-cCCCChHHHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRR-ELPGDNEVAESLHN 388 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 388 (543)
++.+.|+.++|+++|+++.+ .+|-....|.....
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 99999999999999999997 89999999876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-22 Score=188.45 Aligned_cols=255 Identities=13% Similarity=0.033 Sum_probs=181.2
Q ss_pred CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChH
Q 009096 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPN 149 (543)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 149 (543)
+|....++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..|++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 97 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA----- 97 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 5677899999999999999999999999999995 566788899999999999999999998866542
Q ss_pred HHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC-----CC
Q 009096 150 ELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-----HY 224 (543)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~ 224 (543)
.+.+....++.....++..+|.++...|++++|+..++++++.. ++
T Consensus 98 -----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 98 -----------------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp -----------------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -----------------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111111224556667777777777777777777776653 22
Q ss_pred CChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC-----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 009096 225 SPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD-----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACS 299 (543)
Q Consensus 225 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~ 299 (543)
. ......+..+|.++...|++++|+..+++++... ++++..... +..+|.++...|++++|+.
T Consensus 149 ~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 149 H---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT---------KNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp C---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH---------HHHHHHHHHHHTCHHHHHH
T ss_pred C---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH---------HHHHHHHHHHcCCHHHHHH
Confidence 2 2223456677999999999999999999999871 223332222 2458999999999999999
Q ss_pred HHHHHhccC---------CCChhHHhH------HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 009096 300 AYGEGLKYD---------SYNSILYCN------RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE 364 (543)
Q Consensus 300 ~~~~al~~~---------p~~~~~~~~------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 364 (543)
.|+++++.. +.....+.. .+..+...+.+.+|+..+++++...|....++..+|.++...|++++
T Consensus 217 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 296 (311)
T 3nf1_A 217 LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA 296 (311)
T ss_dssp HHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHH
Confidence 999999753 333333333 44445566677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 009096 365 AVRDYEALRRELPG 378 (543)
Q Consensus 365 A~~~~~~al~~~p~ 378 (543)
|+.+|++++++.|+
T Consensus 297 A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 297 AETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-19 Score=175.80 Aligned_cols=287 Identities=15% Similarity=0.008 Sum_probs=215.7
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN----- 116 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----- 116 (543)
..+.+..+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.|...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 456778889999999999999999999999877543 3678899999999999999999999998765432
Q ss_pred -hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--CCCHH
Q 009096 117 -RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV--DSSPQ 193 (543)
Q Consensus 117 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~ 193 (543)
.++..+|.++...|++++|+..+++++. ...+. ..+ .....
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~ 136 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------------------LINEQ--HLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCTTSTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHHHh--ccccCcHHHH
Confidence 2356777777777777777777655432 00000 001 11134
Q ss_pred HHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHH
Q 009096 194 LVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASV 271 (543)
Q Consensus 194 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 271 (543)
.+..+|.++...|++++|...+++++...+...... ....+..+|.++...|++++|...+++++.+.+. ....+..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 566678888888888888888888887776654333 2346667799999999999999999999876332 2211111
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---
Q 009096 272 LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRIQPN--- 344 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 344 (543)
.. ....+.++...|++++|...+++++...|.. ...+..+|.++...|++++|+..+++++...+.
T Consensus 216 ~~-------~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 216 NA-------NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HH-------HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HH-------HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 10 1124566889999999999999999887653 235678999999999999999999999887543
Q ss_pred ---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
...++..+|.++...|++++|...+++++.+.+
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 225788999999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=171.09 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..++.+|..+...|++++|+..|+++++..|.++.. ..+++.+|.++...|++++|+..|++++...|+++....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA---ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 37888999999999999999999999999999988432 234566699999999999999999999999997755433
Q ss_pred HHHhHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhccCCCChhHH-----------------hHHHHHHHHc
Q 009096 271 VLTNVKMVVRARTRGNNLFS--------SRRYSEACSAYGEGLKYDSYNSILY-----------------CNRAICWSKM 325 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~ 325 (543)
. ++.+|.++.. .|++++|+..|+++++.+|++..+. +.+|.+|...
T Consensus 91 a---------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 161 (261)
T 3qky_A 91 A---------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR 161 (261)
T ss_dssp H---------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 2458999999 9999999999999999999987766 8899999999
Q ss_pred cCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 326 GLWENSIEDCNVALRIQPN---YTKALLRRAVSNEKL----------GRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+..|+++++.+|+++.+......+...
T Consensus 162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRA 241 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999998 467999999999987 999999999999999999998766555444433
Q ss_pred H
Q 009096 393 L 393 (543)
Q Consensus 393 l 393 (543)
.
T Consensus 242 ~ 242 (261)
T 3qky_A 242 R 242 (261)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=200.22 Aligned_cols=76 Identities=13% Similarity=-0.066 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+|.++...|++++ +..|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++...+
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 4555555555555 555555555555555555555555555555555555555555555555555555555554433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=186.20 Aligned_cols=247 Identities=12% Similarity=-0.013 Sum_probs=182.3
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc---CC---cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM---SP---ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
++.+|..++..|++++|+..|++++++ .+ ..+.+++.+|.+|...|++++|+.++++++++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 334999999999999999999999987 22 346889999999999999999999999999885443 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
++..+|.++..+|++++|+.+|++++. ...+. .++.....++..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~~~ 229 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYS----------------------------------MAEAE--KQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------------HHHHc--CChHHHHHHHHH
Confidence 778888888888888888887766543 00000 000011245666
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHhH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTNV 275 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 275 (543)
+|.+|..+|++++|+..++++++..+..........++..+|.++...|++++|+.++++++.+.+. ++.....
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---- 305 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE---- 305 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH----
Confidence 7777777777777777777777643222211112445666799999999999999999999877543 2222111
Q ss_pred HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 276 KMVVRARTRGNNLFSSRR---YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
+..+|.++...|+ +++|+..+++. ...|....++..+|.+|...|++++|+.+|++++++..
T Consensus 306 -----~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 -----FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp -----HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2347999999999 88999999887 44455677899999999999999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=179.37 Aligned_cols=191 Identities=11% Similarity=0.016 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhh-cChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISE-LRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
..++..+|.+|..+|++++|+.+|++++.+.+...........+..+|.++... |++++|+.+|++++.+.|.......
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 345666777777777777777777777777665544444455677779999996 9999999999999998775421100
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh-------HHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI-------LYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
....+.++|.++...|++++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|+++++++|
T Consensus 157 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 157 ------SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred ------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0112356899999999999999999999999987654 578999999999999999999999999999
Q ss_pred CCHHH-----HHHHHHHHH--HccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 344 NYTKA-----LLRRAVSNE--KLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 344 ~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
++... +..++..+. ..+++++|+..|++++.++|.+..++..+.+
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 87653 445666664 4678999999999999998877655544433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-20 Score=179.03 Aligned_cols=310 Identities=11% Similarity=-0.054 Sum_probs=230.9
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCC---cchhhHHhHHHHHH----HcCCHHHHH---------HHHHHHHhc
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSP---ENAAYRSNRAATLT----ALGRLTEAV---------SDCEEAVRL 111 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~ 111 (543)
....++-=..++..+++++|...++++.+.-+ .+.......+...+ ..+.+..+. ..+++.-..
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 34444444455789999999999998765321 23333322222221 123332222 444443221
Q ss_pred C-CC----ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCC----CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 009096 112 D-PG----YNRAHQRLASLYFRLGQVENARHHLCFPGHH----PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDA 182 (543)
Q Consensus 112 ~-p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 182 (543)
. |. ....++.+|..+...|++++|+..|++++.. +++ ......+..+|.++...|+++.|+..+.+
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-----IEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 11 1235778899999999999999999998871 222 34466788999999999999999999999
Q ss_pred HHHcCCCC------CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 009096 183 AIAIGVDS------SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAE 256 (543)
Q Consensus 183 ~l~~~p~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 256 (543)
+++..+.. ...++..+|.++...|++++|+..++++++..+..........++.++|.++...|++++|+.+|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99875432 245677899999999999999999999998766555555556678888999999999999999999
Q ss_pred HHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHcc
Q 009096 257 KAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMG 326 (543)
Q Consensus 257 ~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g 326 (543)
+++. .+|....+ +..+|.++...|++++|+.++++++++.+ .....+..++.++...+
T Consensus 247 ~al~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKV------------LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HHHHHHHHHCGGGHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHhhCChhHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9998 55555333 34589999999999999999999998743 33455677888888888
Q ss_pred C---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 327 L---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 327 ~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
+ +.+|+..+++. ...|....++..+|.+|...|++++|..+|++++++
T Consensus 315 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 315 DERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8 88888888872 233445678889999999999999999999999875
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=149.65 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=81.5
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
..+.+.+.+.+.+..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 82 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGK 82 (105)
T ss_dssp -------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTE
T ss_pred cccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCe
Confidence 45667778888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcC
Q 009096 491 KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++.++.|. +.+++.++|++++
T Consensus 83 ~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 83 EILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcCHHHHHHHHHHhh
Confidence 99999999 9999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-21 Score=159.37 Aligned_cols=141 Identities=10% Similarity=-0.006 Sum_probs=127.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|.++...|++++|+..+++++..+|+++..+ +.+|.+|...|+|++|++.|+++++++|+++.+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~------------~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKG------------FYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 38889999999999999999999988877664 347999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhcCCCChHHHHHHHHHH
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD-YEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~ 390 (543)
+|.+|..+|++++|+..|+++++++|+++.+++++|.++...|++++|... ++++++++|+++.++.....+.
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887765 5999999999999987665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=155.66 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=160.5
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
....+..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++...|++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~- 79 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVA- 79 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-
Confidence 3566788999999999999999999999999998744 445559999999999999999999999999988775
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALL 350 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 350 (543)
..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+++.++.
T Consensus 80 -----------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 80 -----------TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp -----------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------HHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.+|.++...|++++|..+++++++++|+++..
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 99999999999999999999999999887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=160.59 Aligned_cols=186 Identities=16% Similarity=0.128 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH
Q 009096 192 PQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV 271 (543)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 271 (543)
+.++..+|.++...|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-- 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN-- 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH--
Confidence 667788899999999999999999999888888744 344459999999999999999999999999988765
Q ss_pred HHhHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHhc--cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 009096 272 LTNVKMVVRARTRGNNLFSS-RRYSEACSAYGEGLK--YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348 (543)
Q Consensus 272 l~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 348 (543)
..+|.++... |++++|+..|+++++ ..|.+..++..+|.++...|++++|+..|+++++..|+++.+
T Consensus 80 ----------~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 149 (225)
T 2vq2_A 80 ----------NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA 149 (225)
T ss_dssp ----------HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred ----------HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH
Confidence 3479999999 999999999999999 667778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHh
Q 009096 349 LLRRAVSNEKLGRWSEAVRDYEALRRELP-GDNEVAESLHNAQVALKK 395 (543)
Q Consensus 349 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~l~~ 395 (543)
+..+|.++...|++++|+..++++++..| +++.++..+..+....+.
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999 999887666655544433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-20 Score=171.71 Aligned_cols=239 Identities=12% Similarity=-0.019 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHHhCCHHHHH
Q 009096 63 NFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG------YNRAHQRLASLYFRLGQVENAR 136 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (543)
++++|+..|+++ |.+|...|++++|+.+|++++++.+. ...++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888888777 56777888888888888888877432 2456777777777777777777
Q ss_pred HHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cChhHHHHHh
Q 009096 137 HHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL-HQNEDADSCL 215 (543)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~ 215 (543)
.+|++++. .+...|++..+ ..++..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~---------------------l~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ---------------------IFTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH---------------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 77765542 00111222111 34566778888885 8888888888
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHH
Q 009096 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYS 295 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 295 (543)
++++++.|...........+..+|.++..+|++++|+..|++++.+.|++..... .....+..+|.++...|+++
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~ 216 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-----SLKDYFLKKGLCQLAATDAV 216 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG-----GHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH-----HHHHHHHHHHHHHHHcCCHH
Confidence 8888877765443333445677799999999999999999999999988754210 00111345899999999999
Q ss_pred HHHHHHHHHhccCCCChh-----HHhHHHHHHH--HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 296 EACSAYGEGLKYDSYNSI-----LYCNRAICWS--KMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 296 ~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
+|+..|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.+...+..+-..+
T Consensus 217 ~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 217 AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999998654 3455666664 467899999999999999998777766655544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-19 Score=157.35 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=146.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHh----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSN----------------RAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (543)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
++|+++.++..+|.++..+|++++|+..| +++++++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~~~P~~ 121 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMY-----------------------------------------EKILQLEADN 121 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHCTTC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHcCCCC
Confidence 99999999999999999988888777765 6677788877
Q ss_pred CHHHHHHHHHHHHHccC--hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH
Q 009096 191 SPQLVACKAEAHLKLHQ--NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
+.++..+|.+|...|+ ...+...+.+++...|. ..+++.+|.++...|++++|+..|+++++++|+..
T Consensus 122 -~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 122 -LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-------QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 7888999999987765 45677788887643322 12455668899999999999999999999999854
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-19 Score=158.01 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=75.5
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---HHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR---AHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (543)
+++.++.+|..++..|+|++|+..|+++++..|+++ .+++.+|.+++..|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 578899999999999999999999999999988764 78999999999999999999999999999998865 788
Q ss_pred HHHHHHHHhC
Q 009096 121 RLASLYFRLG 130 (543)
Q Consensus 121 ~la~~~~~~g 130 (543)
.+|.++..++
T Consensus 83 ~~g~~~~~~~ 92 (225)
T 2yhc_A 83 MRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888887655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=146.58 Aligned_cols=120 Identities=28% Similarity=0.563 Sum_probs=110.8
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+..++|+.... +.++|..+++.|+|++|++.|+++++++|+++.+|.++|.++..+|++++|+..|++
T Consensus 5 ~a~inP~~a~~------------~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 5 LAYINPELAQE------------EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp --CCCHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 33466665554 356899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+++++|+++.+|+++|.++..+|++++|+..|+++++++|++++++..+..+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888765
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=144.08 Aligned_cols=100 Identities=22% Similarity=0.497 Sum_probs=94.1
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
....+.+.|++++..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 9 ~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp EECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34567788889998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhc
Q 009096 491 KLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~ 510 (543)
++.++.|.++++|+++|+++
T Consensus 89 ~~~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 89 EVAKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHhh
Confidence 99999999889999999875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-18 Score=178.34 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=183.8
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc----chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE----NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
..+|+..-.....++..|.+.+|++.|++++ +.|. +...-..++.+..+. +..+..++..+.-..+ .-
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HH
Confidence 3466777788889999999999999999999 4454 222222233333222 2222222222211111 12
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++..+|.+++|...|+++.. .. ......+...+++++|++.++++ +.+.+|..+|.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~---~~-----------~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV---NT-----------SAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC---HH-----------HHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 256666666666666666666531 00 00011112445555555555433 12455555555
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH------HHHHHHHh
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV------EIASVLTN 274 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~ 274 (543)
++...|++++|+..|.++ +++.. +...|.++.+.|++++|+++|..+.+..++.. .++.-+..
T Consensus 1114 Aql~~G~~kEAIdsYiKA-----dD~sa------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-----DDPSS------YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-----CChHH------HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 555555555555555554 22222 22225555555555555555555554443310 00000000
Q ss_pred HH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC--
Q 009096 275 VK---------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQP-- 343 (543)
Q Consensus 275 ~~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 343 (543)
+. ....+...|..+...|+|++|+.+|.++ ..|..+|.++.++|++++|++.++++....+
T Consensus 1183 leele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWk 1254 (1630)
T 1xi4_A 1183 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 1254 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHH
Confidence 00 0112456899999999999999999986 4789999999999999999999998855433
Q ss_pred -----------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 344 -----------------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 344 -----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
.+++-+..++..|...|.+++|+.++++++.++|.+...+..++.+....+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence 2455566788889999999999999999999999999999888877665543
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=145.33 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=84.6
Q ss_pred CCeEEeehhhhhhh-ccCCCC--ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKA-AISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~-~i~~~~--~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+.+++. +.|.+ +...++ +++++||++||++|+.+.|.|++++++|++++|++||+++. +.+|+|.++||++
T Consensus 3 G~v~~it~-~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~ 78 (118)
T 3evi_A 3 GELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIF 78 (118)
T ss_dssp CSCEECCG-GGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred cceEEeCH-HHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence 34556654 44544 444444 89999999999999999999999999999999999999986 5899999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|+||+++.+++|. +.++|+.+|.+.
T Consensus 79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 99999999999985 589999999864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-18 Score=157.06 Aligned_cols=209 Identities=12% Similarity=0.038 Sum_probs=168.2
Q ss_pred CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHHHhcCCCCCCChHHHhH
Q 009096 78 SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR----LGQVENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
+|.++.+++.+|.++...|++++|+..|+++++ |+++.+++.+|.++.. .+++++|+.+|++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~------------ 67 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAK------------ 67 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH------------
Confidence 578899999999999999999999999999998 7788899999999888 7777777766633
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL 233 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 233 (543)
+++.+ .+.++..+
T Consensus 68 -----------------------------a~~~~---~~~a~~~l----------------------------------- 80 (273)
T 1ouv_A 68 -----------------------------ACDLN---YSNGCHLL----------------------------------- 80 (273)
T ss_dssp -----------------------------HHHTT---CHHHHHHH-----------------------------------
T ss_pred -----------------------------HHHCC---CHHHHHHH-----------------------------------
Confidence 33321 13333333
Q ss_pred HHHHHHHHHHh----hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 009096 234 VWLLKLMFNIS----ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGL 305 (543)
Q Consensus 234 ~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al 305 (543)
|.++.. .+++++|+..|+++++.+ ++.++ ..+|.++.. .+++++|+.+|++++
T Consensus 81 -----g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 81 -----GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC------------ASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp -----HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH------------HHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred -----HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH------------HHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 555555 777778888888887763 44443 447999999 999999999999999
Q ss_pred ccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 009096 306 KYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 306 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 377 (543)
+.. ++.++.++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++..|
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 976 68899999999999 99999999999999987 468999999999999 9999999999999999976
Q ss_pred CChHHHHHHHHHHHH
Q 009096 378 GDNEVAESLHNAQVA 392 (543)
Q Consensus 378 ~~~~~~~~l~~~~~~ 392 (543)
+.+...++.+...
T Consensus 218 --~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 218 --GGGCFNLGAMQYN 230 (273)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHc
Confidence 6666666665443
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=142.65 Aligned_cols=102 Identities=21% Similarity=0.419 Sum_probs=93.7
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.|.+.+ ..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 45677778888888 5789999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+++.++.|.+.++|.++|++++
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~l 106 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhc
Confidence 999999999996677999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-20 Score=161.00 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=149.2
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWL 236 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
+..++..|..+...|++++|+..|+++++.+|++ +.+++..+ ... ... .......
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~-----~~~-----------------~~~--~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-TEMYYWTN-----VDK-----------------NSE--ISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-HHHHHHHH-----SCT-----------------TSH--HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHhh-----hcc-----------------hhh--hhHHHHH
Confidence 4556778888888888888888888888888765 33333221 100 001 1112233
Q ss_pred HHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 237 LKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 237 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
.+|.++...|++++|+..|+++++++|++..++ ..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL------------EACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 469999999999999999999999999999885 34799999999999999999999999999999999
Q ss_pred HHHHHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 317 NRAICWSKMGL--WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 317 ~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
++|.+|...|+ ...+...+++++...|. ..+++.+|.++..+|++++|+.+|+++++++|++ .+...+.++
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 99999987764 55677888887654332 3578899999999999999999999999999974 344444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=176.86 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=163.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
++..|+.+|..+...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++ +.+...+|.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHH
Confidence 4445555555555555555555555443 44445555555555555555555555555544422 11122355555
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
.+++++++ ++.|.+ .++ ...+...|..+...|+|++|+..|.++ ..|..++.++.++|
T Consensus 1178 AKl~rlee-le~fI~---~~n---------~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEFIN---GPN---------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HhhcCHHH-HHHHHh---CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 55555443 222211 111 112344555556666666666666553 23445566666666
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++++|++.++++.. . .+|...+.++...|+|..|..+... +..+|+.. ..++.
T Consensus 1236 e~q~AIEaarKA~n-----~------~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL---------------eeli~ 1288 (1630)
T 1xi4_A 1236 EYQAAVDGARKANS-----T------RTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---------------EELIN 1288 (1630)
T ss_pred CHHHHHHHHHHhCC-----H------HHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH---------------HHHHH
Confidence 66666666665521 1 2233335555556666666555542 33343332 34678
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHc
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK--MGLWENSIEDCNVALRIQP-----NYTKALLRRAVSNEKL 359 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 359 (543)
.|...|.|++|+.+++.++.+++.+...+..+|.+|.+ -++..++++.|...+.+.| ++...|..+..+|.+-
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999888888765 5678889999998888877 7788899999999999
Q ss_pred cCHHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEAL 372 (543)
Q Consensus 360 g~~~~A~~~~~~a 372 (543)
|+++.|+...-..
T Consensus 1369 ~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1369 EEYDNAIITMMNH 1381 (1630)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=174.56 Aligned_cols=246 Identities=12% Similarity=-0.008 Sum_probs=179.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCC------cchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC-------Ch
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSP------ENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG-------YN 116 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~ 116 (543)
.++.+|..++..|++++|+..|++++++.+ ..+.+++.+|.+|...|++++|+.++++++++.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987632 34678999999999999999999999999987543 24
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009096 117 RAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVA 196 (543)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 196 (543)
.++..+|.++..+|++++|+.+|++++. ...+. .++.....++.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~----------------------------------~~~~~--~~~~~~~~~~~ 226 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALE----------------------------------LAMDI--QNDRFIAISLL 226 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------------------HHHHc--CCHHHHHHHHH
Confidence 4677888888888888888887766543 00000 00001134566
Q ss_pred HHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCC--cHHHHHHHHh
Q 009096 197 CKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYS--NVEIASVLTN 274 (543)
Q Consensus 197 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 274 (543)
.+|.+|...|++++|+..+++++........+.. ..++..+|.++...|++++|+.++++++.+.+. ++.....
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--- 302 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--- 302 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 6777777777777777777777763221111122 345666799999999999999999999987554 2211111
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 009096 275 VKMVVRARTRGNNLFSSRR---YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 342 (543)
+..++.++...++ +.+|+..+++ ....|....++..+|.+|...|++++|+.+|+++++..
T Consensus 303 ------~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 303 ------FLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ------HHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1236788888888 8899998887 33345556788899999999999999999999998764
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-20 Score=145.56 Aligned_cols=101 Identities=28% Similarity=0.484 Sum_probs=93.5
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
....+.+.|.+.+. .+++++|+||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++
T Consensus 14 ~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 93 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93 (116)
T ss_dssp BCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeC
Confidence 34456788888887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.+.++|+++|++++
T Consensus 94 G~~~~~~~G~~~~~l~~~l~~~l 116 (116)
T 3qfa_C 94 GQKVGEFSGANKEKLEATINELV 116 (116)
T ss_dssp SSEEEEEESCCHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCHHHHHHHHHHhC
Confidence 99999999999999999998753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-20 Score=177.60 Aligned_cols=285 Identities=11% Similarity=0.037 Sum_probs=149.3
Q ss_pred cCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHH
Q 009096 30 SNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAV 109 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 109 (543)
.++|...+++. ++++.|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455555544 34579999999999999999999999774 466799999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 110 RLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 110 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
+..++ +.+...++.+|.++|++.++.++++. |+. ..+...|..+...|.|++|..+|.++
T Consensus 89 k~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~---------~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 89 KKARE-SYVETELIFALAKTNRLAELEEFING----PNN---------AHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------CHHHHTTTTTC----C-------------------------CTTTHHHHHHHT------
T ss_pred HhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC----CcH---------HHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 86444 77788999999999999998887753 221 26888999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
..+..+|.++.++|++++|++.++++ .++. .|.....++...|+++.|..+... +..+|++..
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~------~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~-- 211 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR------TWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE-- 211 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHH------HHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH--
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc-----CCch------hHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH--
Confidence 24778999999999999999999999 2333 344447899999999999887775 345665532
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH--ccCHHHHHHHHHHHHhhCC----
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK--MGLWENSIEDCNVALRIQP---- 343 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p---- 343 (543)
.+...|.+.|++++|+.++++++.+++.+...+..+|.+|.+ .++..++++.|...+.+.|
T Consensus 212 -------------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 212 -------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp -------------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred -------------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH
Confidence 257789999999999999999999999999999999999875 5778889999988888888
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 344 -NYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 344 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.++..|..+..+|...++++.|+...-....
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~ 310 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 310 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence 7889999999999999999999986655433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=153.81 Aligned_cols=146 Identities=8% Similarity=-0.069 Sum_probs=129.3
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
+|.++...|++++|+..+++++...|+++..... +|.+|...|++++|+..|+++++++|+++.++.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~------la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~------- 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFY------FAKLYYEAKEYDLAKKYICTYINVQERDPKAHR------- 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHH------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-------
Confidence 5778888899999999999999888877554444 499999999999999999999999999998863
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED-CNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~ 356 (543)
.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|++++|... ++++++++|+++.++..++.++
T Consensus 70 -----~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 70 -----FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999887765 5999999999999999999999
Q ss_pred HHccC
Q 009096 357 EKLGR 361 (543)
Q Consensus 357 ~~~g~ 361 (543)
...|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 88875
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=149.33 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=99.1
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..+.+.+.+...+.. ++++++.||++||++|+.+.|.+++++++++++.|+.||+++++.++++|+|.++||+++
T Consensus 12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 91 (153)
T 2wz9_A 12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLF 91 (153)
T ss_dssp CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEE
Confidence 345667777888888766 889999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcCCCCCC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 516 (543)
|++|+++.++.|.+.+++.++|++++.....
T Consensus 92 ~~~G~~~~~~~G~~~~~l~~~i~~~l~~~~~ 122 (153)
T 2wz9_A 92 FKNSQKIDRLDGAHAPELTKKVQRHASSGSF 122 (153)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHSCTTSS
T ss_pred EECCEEEEEEeCCCHHHHHHHHHHHhccccC
Confidence 9999999999999888999999998866544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-17 Score=149.92 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=182.7
Q ss_pred HHhcCCHH-HHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 58 MYRKGNFV-EALKLYDKAISMSPENAAYRSNRAATLTALGR----------LTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 58 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+.|+++ +|+.++.+++..+|++..+|+.++.++..++. +++++..+..++..+|.+..+|...+.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34667776 79999999999999999999999999988876 68999999999999999999999999988
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
..+++ .++++++..++++++.+|.+ ..+|..+
T Consensus 119 ~~l~~---------------------------------------~~~~~EL~~~~k~l~~dprN-y~AW~~R-------- 150 (331)
T 3dss_A 119 SRLPE---------------------------------------PNWARELELCARFLEADERN-FHCWDYR-------- 150 (331)
T ss_dssp HHCSS---------------------------------------CCHHHHHHHHHHHHHHCTTC-HHHHHHH--------
T ss_pred hccCc---------------------------------------ccHHHHHHHHHHHHHhCCCC-HHHHHHH--------
Confidence 87653 02344455556677777666 3444444
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC-hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR-FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRG 285 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g 285 (543)
+.+....|. ++++++++.+++..+|.+..+|.. ++
T Consensus 151 --------------------------------~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~------------R~ 186 (331)
T 3dss_A 151 --------------------------------RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY------------RS 186 (331)
T ss_dssp --------------------------------HHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH------------HH
T ss_pred --------------------------------HHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH------------HH
Confidence 444444454 366777777777777777776643 34
Q ss_pred HHHHhc--------------CCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-----------cCHHHHHHHHHHHHh
Q 009096 286 NNLFSS--------------RRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-----------GLWENSIEDCNVALR 340 (543)
Q Consensus 286 ~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~ 340 (543)
.++... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 444433 5689999999999999999999998776666665 568999999999999
Q ss_pred hCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 341 IQPNYTKALLRRAVSNE---KLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+.|++.-.+..++.+.. ..|..++...++.+.+++||-...-+..+...
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 99999655544444332 35788999999999999999988877666543
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=142.62 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=95.5
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+..+++.+.|.+.+..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|++
T Consensus 20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~ 99 (125)
T 1r26_A 20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARS 99 (125)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEEeC
Confidence 35667776888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.+.++|.++|++++
T Consensus 100 G~~~~~~~G~~~~~l~~~l~~~l 122 (125)
T 1r26_A 100 GKMLGHVIGANPGMLRQKLRDII 122 (125)
T ss_dssp TEEEEEEESSCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCHHHHHHHHHHHh
Confidence 99999999998899999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=159.36 Aligned_cols=241 Identities=8% Similarity=-0.088 Sum_probs=197.6
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcC--CHHHHHHHHHHHHhcCCcchhhHHhHHHHH----HHc---CCHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG--NFVEALKLYDKAISMSPENAAYRSNRAATL----TAL---GRLT 99 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~~ 99 (543)
...+|+.....++..+|.+..+|+.++.++...| ++++++.++.+++..+|++..+|+.++.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3345777888999999999999999999999999 999999999999999999999999999999 777 8999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHH
Q 009096 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRE 179 (543)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 179 (543)
+++..+.++++.+|.+..+|...+.++..+|.++ ..+++..
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~---------------------------------------~~~EL~~ 168 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN---------------------------------------DAKELSF 168 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT---------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC---------------------------------------hHHHHHH
Confidence 9999999999999999999999999998887654 0134555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Q 009096 180 TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAG 259 (543)
Q Consensus 180 ~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 259 (543)
++++++.+|.+ ..+|..++.++...+... . ...++++++++++++
T Consensus 169 ~~~~i~~d~~N-~sAW~~R~~ll~~l~~~~---------------~-------------------~~~~~eEl~~~~~aI 213 (306)
T 3dra_A 169 VDKVIDTDLKN-NSAWSHRFFLLFSKKHLA---------------T-------------------DNTIDEELNYVKDKI 213 (306)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHSSGGGC---------------C-------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-HHHHHHHHHHHHhccccc---------------h-------------------hhhHHHHHHHHHHHH
Confidence 67777777776 455555555555443210 0 012678999999999
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHhccC---CCChhHHhHHHHHHHHccCHHHHHHHH
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE-ACSAYGEGLKYD---SYNSILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
..+|++..+|.. ++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+.++|+++|
T Consensus 214 ~~~p~n~SaW~y------------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 214 VKCPQNPSTWNY------------LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHCSSCHHHHHH------------HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCccHHHH------------HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998754 5667777777444 556777788776 888999999999999999999999999
Q ss_pred HHHHh-hCCCCHHHHHHHHHH
Q 009096 336 NVALR-IQPNYTKALLRRAVS 355 (543)
Q Consensus 336 ~~al~-~~p~~~~~~~~la~~ 355 (543)
+.+.+ .+|-....|..++..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 99996 799999988877754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=148.26 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=116.0
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
+...+++-.+-..+++++.++|++..++ +.+|.++...|++++|+..|++++.++|+++.+|+++|.+
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~------------~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~ 79 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDI------------YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344444555566788899999998875 4579999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh
Q 009096 322 WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 322 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 380 (543)
+..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|++++++.|+.+
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999876
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=142.02 Aligned_cols=103 Identities=27% Similarity=0.450 Sum_probs=95.2
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+..+.+.+.+.+++..++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 91 (114)
T 2oe3_A 12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGK 91 (114)
T ss_dssp GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEe
Confidence 34566778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhc
Q 009096 488 NGEKLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~ 510 (543)
+|+++.++.|..+++|+++|+++
T Consensus 92 ~G~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 92 DGQLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp TTEEEEEEESSCHHHHHHHHHTC
T ss_pred CCeEEEEEeCCCHHHHHHHHHhC
Confidence 99999999998889999998763
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=138.57 Aligned_cols=102 Identities=29% Similarity=0.538 Sum_probs=94.4
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 345677788888886 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+.+.++.|.+.+++.++|++++
T Consensus 82 ~g~~~~~~~g~~~~~l~~~l~~~l 105 (105)
T 3m9j_A 82 KGQKVGEFSGANKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCeEEEEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999998753
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=140.12 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=89.8
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
..+.+.| +.+..++++++.||++||++|+.+.|.+++++.+++++.|+.+|++++++++++|+|.++||+++|++|+++
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3455666 566677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++.|. ++++|.++|+++.++.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~~~~ 108 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIHHHH 108 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC----
T ss_pred EEEcCCCCHHHHHHHHHHHhhhc
Confidence 999998 9999999999886553
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-19 Score=142.39 Aligned_cols=104 Identities=25% Similarity=0.445 Sum_probs=95.3
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+
T Consensus 16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~ 95 (124)
T 1xfl_A 16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 95 (124)
T ss_dssp SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCEE
Confidence 44667777788887775 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++++|+++.++.|.+++++.++|++++
T Consensus 96 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l 123 (124)
T 1xfl_A 96 MFLKEGKILDKVVGAKKDELQSTIAKHL 123 (124)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEEECCEEEEEEeCCCHHHHHHHHHHhc
Confidence 9999999999999999999999998765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=185.98 Aligned_cols=184 Identities=10% Similarity=-0.079 Sum_probs=165.0
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCC--------CCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP--------KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
.+|++ +..++..+ ...|++++|+..+++++ +.+|++...+.. +|.++...|++++|+..|++
T Consensus 389 ~~p~~-~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~------~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTD-VAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLM------EVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp CCTTS-TTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHH------HHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCC-cchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHH------HHHHHHhcCCHHHHHHHHHH
Confidence 34555 44444444 78899999999999999 888998765444 49999999999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
+++.+|++..++ ..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|++
T Consensus 459 al~~~p~~~~a~------------~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 459 LAERVGWRWRLV------------WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp HHHHHCCCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH
T ss_pred HhccCcchHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 999999999886 3479999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
+++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+...
T Consensus 526 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 526 VWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999888877543
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=147.61 Aligned_cols=105 Identities=13% Similarity=0.260 Sum_probs=95.1
Q ss_pred eEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+.+.+.+.+ ..+++++|+||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++||++++
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 44566777788877 5689999999999999999999999999999988 99999999999999999999999999999
Q ss_pred ECCeEE---------EEEcC-C-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKL---------KEMIN-P-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~---------~~~~g-~-~~~~~~~~~~~~~~~~ 514 (543)
++|+++ .++.| . +++++.++|++.....
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~ 123 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 123 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence 999999 99999 7 9999999999876443
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=138.25 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=89.5
Q ss_pred eEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhh--CCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVR--YPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~--~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..+++.+.|.+.+.. ++++++.||++||++|+.+.|.+++++++ ++++.|+.+|++++++++++|+|.++||++
T Consensus 2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 81 (112)
T 3d6i_A 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI 81 (112)
T ss_dssp EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence 3455666777777765 88999999999999999999999999998 578999999999999999999999999999
Q ss_pred EEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|++|+++.++.|...+++.++|++++
T Consensus 82 ~~~~G~~~~~~~G~~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 82 IIHKGTILKELSGADPKEYVSLLEDCK 108 (112)
T ss_dssp EEETTEEEEEECSCCHHHHHHHHHHHH
T ss_pred EEECCEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999999997778999998764
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-19 Score=138.92 Aligned_cols=104 Identities=28% Similarity=0.478 Sum_probs=95.1
Q ss_pred CeEEeehhhhhhhccCC----CCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 409 EVEEISSLEKFKAAISS----PGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~----~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+..+.+.+.+.+.+.. ++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 82 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence 46667777888888765 7899999999999999999999999999998 699999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
+++++|+++.++.|.+.+++.++|++++.
T Consensus 83 ~~~~~G~~~~~~~G~~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 83 HVYKDGVKADDLVGASQDKLKALVAKHAA 111 (112)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred EEEECCeEEEEEcCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999998653
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=137.45 Aligned_cols=106 Identities=20% Similarity=0.368 Sum_probs=93.0
Q ss_pred CCCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 406 MSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 406 ~~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
|.+.+..+++.+....+...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||++
T Consensus 3 m~~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 82 (112)
T 1t00_A 3 MAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82 (112)
T ss_dssp SSCCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred ccceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence 334455666655555566678899999999999999999999999999996 4999999999999999999999999999
Q ss_pred EEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++++|+++.++.|. +.+++.++|++++
T Consensus 83 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 83 VYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999 8999999998764
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-19 Score=137.60 Aligned_cols=99 Identities=24% Similarity=0.305 Sum_probs=90.8
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.|.+.+ .++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++|+++.+
T Consensus 8 ~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (112)
T 2voc_A 8 DQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86 (112)
T ss_dssp TTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEE
T ss_pred HHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEE
Confidence 35666666 78899999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCCCCC
Q 009096 495 MINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
+.|. +.+++.++|++.+.++.
T Consensus 87 ~~G~~~~~~l~~~l~~~~~~~~ 108 (112)
T 2voc_A 87 SVGFKPKEALQELVNKHLLEHH 108 (112)
T ss_dssp EESCCCHHHHHHHHHTTSCSCC
T ss_pred EeCCCCHHHHHHHHHHHHHhhc
Confidence 9999 99999999999876654
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=134.51 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=90.8
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCc-cc
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRT-VP 481 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~-~P 481 (543)
.+.+..+.+.++|++++..+++++++|+++|||+|+++.|.|+++..+ +++.|+++|+++.++ ++.++||++ .|
T Consensus 5 ~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sP 83 (112)
T 3iv4_A 5 QGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHESP 83 (112)
T ss_dssp GGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSS
T ss_pred hcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCCC
Confidence 456888999999999998899999999999999999999999999986 789999999999976 899999994 99
Q ss_pred EEEEEECCeEEEE-EcCC-CHHHHHHHHH
Q 009096 482 TFKIYKNGEKLKE-MINP-SHQFLEDSAN 508 (543)
Q Consensus 482 t~~~~~~g~~~~~-~~g~-~~~~~~~~~~ 508 (543)
|+++|+||+.+.+ ..+. +++.|.+.++
T Consensus 84 q~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 84 QAFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp EEEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred eEEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 9999999999998 5566 9998887653
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=135.45 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=91.6
Q ss_pred EeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 412 EISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 412 ~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+.+.+.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||++++++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4556677777776 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHHhcC
Q 009096 490 EKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++.+..|.+.+++.++|++++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~l 104 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRHK 104 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHHC
T ss_pred cEEEEEeCCCHHHHHHHHHhhC
Confidence 9999999999999999998753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=143.46 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=122.9
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHH
Q 009096 252 VSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 252 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 331 (543)
-..|++++.++|++...+ +.+|.++...|++++|+..|++++..+|+++.+|+++|.++..+|++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQL------------YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp CCSHHHHTTCCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHcCCHhhHHHH------------HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence 346888999999887774 45799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
+..|++++.++|+++.+++++|.++..+|++++|+.+|+++++++|+++........+...++..+.
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888777777777765543
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=136.72 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=94.0
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
....+.+.|.+.+..++++++.||++||++|+.+.|.++++.++++++.|+.+|+++++.++++|+|.++||++++++|+
T Consensus 11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 90 (112)
T 1syr_A 11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 90 (112)
T ss_dssp EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCc
Confidence 34566788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHhcC
Q 009096 491 KLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~~~~~~~~~~~~~~ 511 (543)
++.++.|.+.++|.++|++++
T Consensus 91 ~~~~~~G~~~~~l~~~l~~~l 111 (112)
T 1syr_A 91 SVDTLLGANDSALKQLIEKYA 111 (112)
T ss_dssp EEEEEESCCHHHHHHHHHTTC
T ss_pred EEEEEeCCCHHHHHHHHHHhh
Confidence 999999999999999999865
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=146.54 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=96.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..++..+....++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++
T Consensus 8 v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 87 (140)
T 3hz4_A 8 IIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCH 87 (140)
T ss_dssp EEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEET
T ss_pred eEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeC
Confidence 455555444446777899999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCCCCCCccccCCCCCCccccccccCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPVYKLPLVTLACSPFGWFSTAVVTGES 539 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (543)
|+++.++.|. +.++|.++|++++........ .+.|.+|-++--|+|--
T Consensus 88 G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 136 (140)
T 3hz4_A 88 GRPVWEQVGQIYPSILKNAVRDMLQHGEECIR---KSTPVGQDITGYVEGHH 136 (140)
T ss_dssp TEEEEEEESSCCHHHHHHHHHHHHHHHHHHHH---TSBC-------------
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhcccccCcc---cccccCccceeeecccc
Confidence 9999999999 999999999988754322211 12444566666666643
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=135.14 Aligned_cols=101 Identities=21% Similarity=0.418 Sum_probs=89.3
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.|. .....++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 4 v~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (108)
T 2trx_A 4 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82 (108)
T ss_dssp EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEE
T ss_pred ceecch-hhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEe
Confidence 344444 4454 455678899999999999999999999999999997 4999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|+++.++.|. +.+++.++|++.+
T Consensus 83 ~G~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 83 NGEVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCHHHHHHHHHHhh
Confidence 99999999999 9999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=146.90 Aligned_cols=173 Identities=13% Similarity=0.036 Sum_probs=138.5
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
.....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009096 126 YFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL 205 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~ 205 (543)
+...|++++|+..++++ +...|.. ..++..+|.++...
T Consensus 86 ~~~~~~~~~A~~~~~~~-----------------------------------------~~~~~~~-~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-----------------------------------------AEANPIN-FNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-----------------------------------------HHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHH-----------------------------------------HhcCcHh-HHHHHHHHHHHHHc
Confidence 99988888888777544 3444443 45566667777777
Q ss_pred cChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH
Q 009096 206 HQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 206 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
|++++|+..++++++..|.+.. .+..+|.++...|++++|+..+++++..+|++.
T Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 124 GRFDEAIDSFKIALGLRPNEGK------VHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHHHhcCccchH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 7777777777777666666533 333347777777777777777777777666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-18 Score=135.65 Aligned_cols=102 Identities=31% Similarity=0.453 Sum_probs=95.9
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+|..++.+..+|..+++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCC
Q 009096 121 RLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a 142 (543)
.+|.++..+|++++|+..|+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988888777443
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=136.13 Aligned_cols=97 Identities=23% Similarity=0.376 Sum_probs=90.1
Q ss_pred hhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.|.+.+ ..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|+++
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 456666766 7789999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.+++.++|++++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 999999 9999999998764
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=137.16 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=92.6
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 556677677887776 6889999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+++.++.|.+++++.++|++++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~l 117 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKFI 117 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCCHHHHHHHHHHhC
Confidence 999999999999999999998753
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=133.49 Aligned_cols=96 Identities=23% Similarity=0.442 Sum_probs=89.5
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+.+.+.+ .++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||++++++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 456677777 889999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.+++.++|++++
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHhC
Confidence 99999 9999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-19 Score=164.41 Aligned_cols=234 Identities=13% Similarity=-0.013 Sum_probs=148.1
Q ss_pred HhcCCHHHHHHHHHHHHhc--------CCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhHHHHH
Q 009096 59 YRKGNFVEALKLYDKAISM--------SPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL--------DPGYNRAHQRL 122 (543)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 122 (543)
...|++++|+..|+++++. +|....++..+|.++...|++++|+..|+++++. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888888888773 3667889999999999999999999999999987 35667889999
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.++...|++++|+..|++++. .+.+....+......++..+|.++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~~~~~la~~~ 137 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGKFHPDVAKQLNNLALLC 137 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH----------------------------------HHHHHcCCCChHHHHHHHHHHHHH
Confidence 9999999999999998866643 111111111111234455566666
Q ss_pred HHccChhHHHHHhhcCCCC-----CCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC---------CCcHHH
Q 009096 203 LKLHQNEDADSCLSNMPKF-----EHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD---------YSNVEI 268 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~ 268 (543)
...|++++|+..++++++. .+++ ......+..+|.++...|++++|+..+++++... +.....
T Consensus 138 ~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 138 QNQGKAEEVEYYYRRALEIYATRLGPDD---PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 6666666666666666554 1111 1123345566888888888888888888888652 222222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 269 ASVLTNVKMVVRARTRGNNLFS------SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+.. .+..... ...+.++...++......|....++..+|.+|..+|++++|+.+|+++++.
T Consensus 215 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 215 WMH------------AEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHH------------HHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH------------HHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 211 2333322 223445555555554455556667777777777777777777777777654
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=137.72 Aligned_cols=104 Identities=30% Similarity=0.507 Sum_probs=96.9
Q ss_pred CCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
..+..+.+.+.|.+.+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 34677888899999998889999999999999999999999999999976 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|++|+++.++.|.+++++.++|++++
T Consensus 95 ~~~G~~~~~~~G~~~~~l~~~l~~~l 120 (121)
T 2j23_A 95 FKNGQKIDTVVGADPSKLQAAITQHS 120 (121)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EECCeEEeeEcCCCHHHHHHHHHHhh
Confidence 99999999999999999999998764
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.3e-19 Score=142.72 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=91.5
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------cCcHHHHHHcCC
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------EESLAIAKSEGV 477 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------~~~~~~~~~~~v 477 (543)
.+.+..+ +.+.|.+.+.. +++|+||++||++|+.+.|.+++++++++ +.|+.+|+ +++++++++|+|
T Consensus 15 ~~~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v 90 (135)
T 3emx_A 15 DGRLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV 90 (135)
T ss_dssp TTEEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred cCceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence 3445555 45677777765 99999999999999999999999999998 99999999 889999999999
Q ss_pred CcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 478 RTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 478 ~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.++||+++|++|+++.++.|. +.+.++++++++...+....
T Consensus 91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~~~~ 132 (135)
T 3emx_A 91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEGHHH 132 (135)
T ss_dssp CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-------
T ss_pred ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999 99999999999987765443
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=139.92 Aligned_cols=102 Identities=20% Similarity=0.375 Sum_probs=90.4
Q ss_pred CeEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..++. +.|. .++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++|
T Consensus 23 ~v~~l~~-~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 101 (128)
T 2o8v_B 23 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 101 (128)
T ss_dssp CSEEECT-TTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred ccEecCh-hhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence 3455544 5555 4557789999999999999999999999999999974 99999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+++.++.|. +.++|.++|++.+
T Consensus 102 ~~G~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 102 KNGEVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence 999999999999 9999999998754
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=135.33 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=90.5
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEE
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..++. +.|.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++ .+..++++|+|.++||+++
T Consensus 6 ~v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 84 (111)
T 2pu9_C 6 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 84 (111)
T ss_dssp SEEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEE
T ss_pred ccEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEE
Confidence 3555554 55666665 478999999999999999999999999999999999999998 7899999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++|+++.++.|.+.+++.++|++++
T Consensus 85 ~~~G~~~~~~~G~~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 85 LKENSVVGEVTGAKYDKLLEAIQAAR 110 (111)
T ss_dssp ESSSSEEEEEESSCHHHHHHHHHHHH
T ss_pred EeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence 99999999999998999999998754
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=136.90 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=91.4
Q ss_pred eEEee-hhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEIS-SLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~-~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+. +...+.+ +...++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|+|.++||+++|+
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 84 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVK 84 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence 44454 5566664 445688999999999999999999999999999988999999999999999999999999999999
Q ss_pred C----CeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 488 N----GEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 488 ~----g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+ |+++.++.|...++|++.|+++..+
T Consensus 85 ~~~~~G~~~~~~~G~~~~~l~~~~~~~~~~ 114 (118)
T 2f51_A 85 KEGNEIKTLDQFVGADVSRIKADIEKFKHH 114 (118)
T ss_dssp EETTEEEEEEEEESCCHHHHHHHHHHHC--
T ss_pred CCCCcceEEEeecCCCHHHHHHHHHHhhhc
Confidence 8 9999999999888899999987654
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-19 Score=144.98 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=75.1
Q ss_pred hhhhhccCCCCceeeeeeCCC--CccccchhHhHHHHHhhCCCeE--EEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPYVH--FFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~~~--~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.|++.+...+.++++|+++| |++|+.+.|.|++++++++++. |++||+|++++++.+|+|.++||+++|++|+++
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 677777877778899999877 9999999999999999996688 999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
.++.|. +.++|.++|++++..+..-.
T Consensus 105 ~~~~G~~~~~~l~~~i~~~l~~~~~~~ 131 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSIVDTPAAQE 131 (142)
T ss_dssp -CEESCCCHHHHHHHHHHHHC------
T ss_pred EEEeCCCCHHHHHHHHHHHhcccccCC
Confidence 999998 99999999999876554433
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=133.68 Aligned_cols=95 Identities=24% Similarity=0.383 Sum_probs=88.3
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEM 495 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 495 (543)
+.|...+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|||.++||++++++|+++.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 45667777889999999999999999999999999999976 99999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhcC
Q 009096 496 INP-SHQFLEDSANLAP 511 (543)
Q Consensus 496 ~g~-~~~~~~~~~~~~~ 511 (543)
.|. +.+++.++|++++
T Consensus 88 ~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADVL 104 (105)
T ss_dssp ESCCCHHHHHHHTTTTT
T ss_pred ecCCCHHHHHHHHHHHh
Confidence 998 9999999998765
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=141.77 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=94.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|.+.+..+++++|+||++||++|+.+.|.+.++++++++ +.|+.+|++++..++++|+|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 4444 5567777888889999999999999999999999999988743 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
|++|+ +.++.|. +.++|.++|++++.++...+
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~~~~ 130 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREVSQPDWTPP 130 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHHHSSSCCCC
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHhcCCCCCCC
Confidence 99999 7788898 99999999999887655444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=164.84 Aligned_cols=288 Identities=12% Similarity=0.039 Sum_probs=174.3
Q ss_pred CCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 31 NINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 31 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
..|+..+.++ .++..+...+..+...|+|++|+.+++.+.+..+ ++.+...++.+|.++|++.++.+.++.
T Consensus 49 ~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~--- 119 (449)
T 1b89_A 49 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING--- 119 (449)
T ss_dssp ------------------------------------------------------------------CHHHHTTTTTC---
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC---
Confidence 4577667543 4777999999999999999999999999988644 477888999999999999999988852
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
|+ ..+|..+|..+...|+|++|..+|.++- .+..++.++.++|+|++|++.+.++ .
T Consensus 120 --pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------------n~~~LA~~L~~Lg~yq~AVea~~KA------~ 175 (449)
T 1b89_A 120 --PN-NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKA------N 175 (449)
T ss_dssp --C-----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHH------T
T ss_pred --Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHhh---------------hHHHHHHHHHHhccHHHHHHHHHHc------C
Confidence 53 4599999999999999999999998773 3788999999999999999999999 2
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..|.....++...|+++.|..+...+. ..|+.. . .....|.+.|++++|+.++++++.+++.+...+.
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l---~------~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL---E------ELINYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH---H------HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH---H------HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 37888889999999999999988877643 555541 1 2367899999999999999999999999988875
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-----CChhHHhHHHHHHHHccCHHHHHHHHHHHHhh----
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS-----YNSILYCNRAICWSKMGLWENSIEDCNVALRI---- 341 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 341 (543)
.+. ...+-++-++..+.++.|...+.+.| .++..|..+..+|.+-++|+.|+...-+....
T Consensus 246 el~----------il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~ 315 (449)
T 1b89_A 246 ELA----------ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 315 (449)
T ss_dssp HHH----------HHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH
T ss_pred HHH----------HHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh
Confidence 431 23444667889999999999998888 88999999999999999999999876655433
Q ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 009096 342 --------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALR 373 (543)
Q Consensus 342 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 373 (543)
.+.+.+.++.....|. +....++..+..++
T Consensus 316 ~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 316 GQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 5678888888888877 56666777777777
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=135.17 Aligned_cols=98 Identities=22% Similarity=0.329 Sum_probs=91.4
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+++.+..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++|+++
T Consensus 9 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (109)
T 3tco_A 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLV 88 (109)
T ss_dssp CCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred ecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEE
Confidence 45577778887799999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcC
Q 009096 493 KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~ 511 (543)
.++.|. +.+++.++|++++
T Consensus 89 ~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 89 DSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EeeeccCCHHHHHHHHHHHh
Confidence 999999 9999999999865
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=143.08 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 407 SGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+....++ ...|.+.+..+++++|+||++||++|+.+.|.|++++++++ ++.|+++|++++++++++|+|.++||+++
T Consensus 46 ~~~~~~l~-~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 124 (155)
T 2ppt_A 46 TGKVAGID-PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFIL 124 (155)
T ss_dssp CSSEEECC-HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEE
T ss_pred CCCCccCC-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEE
Confidence 44455554 46676776778899999999999999999999999999997 59999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|++|+++.++.|. +.++|.++|++++..
T Consensus 125 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 153 (155)
T 2ppt_A 125 FHKGRELARAAGARPASELVGFVRGKLGA 153 (155)
T ss_dssp EETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred EeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence 9999999999998 999999999987653
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=132.66 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=91.8
Q ss_pred EEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 411 EEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 411 ~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
..+++.+.+.+.+. .++++++.||++||++|+.+.|.++++++++ +++.|+.+|+++++.++++|+|.++||+++++
T Consensus 3 ~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 3 YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp EECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEc
Confidence 45566677777776 6889999999999999999999999999999 67999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+.+.++.|.+++++.++|++++
T Consensus 83 ~G~~~~~~~g~~~~~l~~~i~~~l 106 (106)
T 1xwb_A 83 NGVKVEEFAGANAKRLEDVIKANI 106 (106)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCHHHHHHHHHHhC
Confidence 999999999998899999998753
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=137.01 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=96.2
Q ss_pred CCeEEeehhhhhhhccCC----CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAISS----PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~----~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+.. ++++++.||++||++|+.+.|.++++.++++++.|+.+|++.++.++++|+|.++||+
T Consensus 6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~ 85 (118)
T 2vm1_A 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTF 85 (118)
T ss_dssp CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEE
T ss_pred CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEE
Confidence 346677777888887754 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++++|+++.++.|.+.+++.++|++++..
T Consensus 86 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 86 LFIKDGEKVDSVVGGRKDDIHTKIVALMGS 115 (118)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHC-
T ss_pred EEEeCCeEEEEecCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999987654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=147.18 Aligned_cols=262 Identities=12% Similarity=-0.057 Sum_probs=197.0
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+...|.-.+++-.........+..++|+.++.++|.++|++..+|+.++.++..+| .+++++..+.+++..+|++..+|
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 34555556666666666666777789999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHh-C-CHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009096 120 QRLASLYFRL-G-QVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVAC 197 (543)
Q Consensus 120 ~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 197 (543)
..++.++..+ + ++ ++++..++++++.+|.+ ..+|..
T Consensus 127 ~hR~wlL~~l~~~~~-----------------------------------------~~EL~~~~k~L~~dpkN-y~AW~~ 164 (349)
T 3q7a_A 127 HHRLLLLDRISPQDP-----------------------------------------VSEIEYIHGSLLPDPKN-YHTWAY 164 (349)
T ss_dssp HHHHHHHHHHCCSCC-----------------------------------------HHHHHHHHHHTSSCTTC-HHHHHH
T ss_pred HHHHHHHHHhcCCCh-----------------------------------------HHHHHHHHHHHHhCCCC-HHHHHH
Confidence 9999887765 3 22 23344445566666555 444444
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
++.++...+.++. .+ ...+.+++++++++++.+|.+..+|..
T Consensus 165 R~wvl~~l~~~~~-------------~~-------------------~~~~~eELe~~~k~I~~dp~N~SAW~~------ 206 (349)
T 3q7a_A 165 LHWLYSHFSTLGR-------------IS-------------------EAQWGSELDWCNEMLRVDGRNNSAWGW------ 206 (349)
T ss_dssp HHHHHHHHHHTTC-------------CC-------------------HHHHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHhccccc-------------cc-------------------hhhHHHHHHHHHHHHHhCCCCHHHHHH------
Confidence 4544444443321 00 011238999999999999999999743
Q ss_pred HHHHHHHHHHHHhcCC-------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH--------------------HH
Q 009096 278 VVRARTRGNNLFSSRR-------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW--------------------EN 330 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--------------------~~ 330 (543)
++.++...++ ++++++++.+++..+|++..+|+++..++...|+. ..
T Consensus 207 ------R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 207 ------RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp ------HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred ------HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 6888888886 79999999999999999999999999999887764 33
Q ss_pred HHHHHHHHHhhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCChHHHHHHHH
Q 009096 331 SIEDCNVALRIQ------PNYTKALLRRAVSNEKLGRWSEAVRDYEALR-RELPGDNEVAESLHN 388 (543)
Q Consensus 331 A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~ 388 (543)
-...+...+... +.++.++..++.+|...|+.++|.+.++... +.+|-....|.....
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 333333333322 5678999999999999999999999999987 778988887765543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=139.40 Aligned_cols=116 Identities=14% Similarity=0.044 Sum_probs=110.6
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (543)
...+++++..+|.++++++.+|..++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
+++.+|+++|.+|..+|++++|+..|+++++ .+++.
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999988 55554
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=138.46 Aligned_cols=102 Identities=21% Similarity=0.411 Sum_probs=85.6
Q ss_pred CeEEeehhhhhh-hccCCCCceeeeeeCCCCc--------------cccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHH
Q 009096 409 EVEEISSLEKFK-AAISSPGVSLVHFKEASSE--------------KCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIA 472 (543)
Q Consensus 409 ~~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~--------------~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~ 472 (543)
.+..++. +.|. .++..+++++++||++||+ +|+.+.|.++++++++++ +.|+++|+++++.++
T Consensus 4 ~v~~l~~-~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~ 82 (123)
T 1oaz_A 4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 82 (123)
T ss_dssp SCEECCS-TTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred ccEecCh-hhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence 3444544 4454 5567789999999999999 999999999999999974 999999999999999
Q ss_pred HHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 473 KSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|||.++||+++|++|+++.++.|. +.+++.++|++++
T Consensus 83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=147.56 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=181.6
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHccChhHHHHHhhcCCCCCCCCChhH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK-------AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQ 229 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 229 (543)
+...+..+.-+ ..+++..|...|.+++..+|+. ..+|..+ +.++...++..+++..+.+.+.+.|..-...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 44456666665 5899999999999999999998 7888888 8999999999999999999999888764333
Q ss_pred HH---------------HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH
Q 009096 230 VK---------------FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294 (543)
Q Consensus 230 ~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 294 (543)
.. -...+..+.++...|++++|.+.|..++...|++. .. +.+|.++++.++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------------~~~a~l~~~~~r~ 151 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------------WMKAVVYGAAERW 151 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------------HHHHHHHHHTTCH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------------HHHHHHHHHcCCH
Confidence 33 12334458899999999999999999999888777 43 3479999999999
Q ss_pred HHHHHHHHHHhccCCCC--hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 295 SEACSAYGEGLKYDSYN--SILYCNRAICWSKMGLWENSIEDCNVALRIQ--PN-YTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
++|+..|+++....+.. ..+++++|.++..+|++++|+..|++++.-. |. .+++++++|.++.++|+.++|...|
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999887753221 4589999999999999999999999998654 55 6689999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHH
Q 009096 370 EALRRELPGDNEVAESLH 387 (543)
Q Consensus 370 ~~al~~~p~~~~~~~~l~ 387 (543)
++++..+|+ +.+...|.
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999999999 88776653
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=135.06 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=90.5
Q ss_pred eEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.....+.+.|.+ +...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 14 ~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 93 (119)
T 1w4v_A 14 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93 (119)
T ss_dssp EEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred EEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEe
Confidence 344455566665 44668899999999999999999999999999985 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|+++.++.|. +.+++.++|++++
T Consensus 94 ~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 94 NGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 99999999999 9999999998764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=162.05 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN-- 311 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-- 311 (543)
.+..+|.++...|++++|+.+|++++.+.+...... ..+..+.++|.++.. |++++|+.+|++++++.|..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~------~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD------TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH------HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 344447778888888888888888876643321110 011224568999988 99999999999999887643
Q ss_pred ----hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 312 ----SILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 312 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..++.++|.+|..+|++++|+.+|++++.+.|++ ..++..+|.++..+|++++|+.+|++++ ++|....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 5788899999999999999999999999886543 3478889999999999999999999999 9997654
Q ss_pred H
Q 009096 382 V 382 (543)
Q Consensus 382 ~ 382 (543)
.
T Consensus 230 ~ 230 (307)
T 2ifu_A 230 S 230 (307)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=132.31 Aligned_cols=96 Identities=24% Similarity=0.409 Sum_probs=87.2
Q ss_pred hhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 416 LEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 416 ~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.+.|.+ ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|||.++||++++++|+++.
T Consensus 8 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (107)
T 1dby_A 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCE 87 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEE
Confidence 345555 446688999999999999999999999999999975 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.+++.++|++++
T Consensus 88 ~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 88 TIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEESCCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 99998 9999999999865
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=135.66 Aligned_cols=104 Identities=26% Similarity=0.447 Sum_probs=94.8
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++.++++++.|+.+|+++++.++++|+|.++||+
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEE
Confidence 44667777788877775 37899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++++|+++.++.|.+++++.++|++++
T Consensus 84 ~~~~~G~~~~~~~g~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 84 IFLKDGKLVDKTVGADKDGLPTLVAKHA 111 (113)
T ss_dssp EEEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred EEEeCCEEEEEEecCCHHHHHHHHHHhh
Confidence 9999999999999998899999998764
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=133.09 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=91.7
Q ss_pred CCeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..++. +.|.. ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|++.++.++++|+|.++||+++
T Consensus 7 ~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (115)
T 1thx_A 7 KGVITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRL 85 (115)
T ss_dssp CSEEECCG-GGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEE
T ss_pred CceEEeec-cchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEE
Confidence 34555544 55554 456788999999999999999999999999999975 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|++|+++.++.|. +.+++.++|++++.
T Consensus 86 ~~~G~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 86 VKGEQILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp EETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred EcCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence 9999999999998 99999999998654
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=131.62 Aligned_cols=100 Identities=19% Similarity=0.371 Sum_probs=88.5
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.|. .....++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|+
T Consensus 4 v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 2i4a_A 4 TLAVSD-SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVR 82 (107)
T ss_dssp EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEE
T ss_pred eeecch-hhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEe
Confidence 334444 4444 444678899999999999999999999999999997 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+|+++.++.|. +.+++.++|+++
T Consensus 83 ~G~~~~~~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 83 DGKVIDKKVGALPKSQLKAWVESA 106 (107)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHT
T ss_pred CCEEEEEecCCCCHHHHHHHHHhc
Confidence 99999999998 999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=159.55 Aligned_cols=237 Identities=13% Similarity=0.046 Sum_probs=166.6
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHH
Q 009096 94 ALGRLTEAVSDCEEAVRL--------DPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCA 165 (543)
Q Consensus 94 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 165 (543)
..|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------- 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA--------------------- 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------
Confidence 467788888888888774 256678899999999999999999998866542
Q ss_pred hhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCC-----CCCChhHHHHHHHHHHHH
Q 009096 166 ESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFE-----HYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 166 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~ 240 (543)
...+....++.....++..+|.++...|++++|+..+++++... ++++ .....+..+|.
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~ 135 (283)
T 3edt_B 72 -------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLAL 135 (283)
T ss_dssp -------------HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHH
T ss_pred -------------HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHH
Confidence 11111111111124456667777777777777777777776652 2221 22345667799
Q ss_pred HHHhhcChHHHHHHHHHHhhc-----CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------
Q 009096 241 FNISELRFENAVSSAEKAGLL-----DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-------- 307 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------- 307 (543)
++...|++++|+..+++++.. .++++..... +..+|.++...|++++|+.+|+++++.
T Consensus 136 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 206 (283)
T 3edt_B 136 LCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT---------KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH---------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987 2333332222 245899999999999999999999986
Q ss_pred -CCCChhHHhHHHHHHHHccC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 308 -DSYNSILYCNRAICWSKMGL------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 308 -~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
.+.....+..++..+...+. +..+...++......|....++..+|.++...|++++|+.+|++++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55566778888877776554 4455555555444556677899999999999999999999999999764
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=137.07 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=91.7
Q ss_pred hccCCCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEe--CcCcHHHHHHcCCCcccEEEEEE-CCeEEEEEc
Q 009096 421 AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVD--VEESLAIAKSEGVRTVPTFKIYK-NGEKLKEMI 496 (543)
Q Consensus 421 ~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d--~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~ 496 (543)
.....++++++.||++||++|+.+.|.++++.+++ +++.|+.+| ++++.+++++|+|.++||+++|+ +|+++.++.
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~ 100 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQ 100 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEec
Confidence 44556789999999999999999999999999999 569999999 99999999999999999999999 999999999
Q ss_pred CC-CHHHHHHHHHhcCCCCCCCCcc
Q 009096 497 NP-SHQFLEDSANLAPSPVYKLPLV 520 (543)
Q Consensus 497 g~-~~~~~~~~~~~~~~~~~~~~~~ 520 (543)
|. +.+++.++|+++..++...+++
T Consensus 101 G~~~~~~l~~~l~~~~~~~~~~~~~ 125 (126)
T 2l57_A 101 GLMRKNNIETILNSLGVKEGHHHHH 125 (126)
T ss_dssp SCCCHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHhccccccccC
Confidence 98 9999999999998887766654
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=138.38 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=86.9
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+......+++++|.||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||++++++|+++.+
T Consensus 32 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 111 (128)
T 3ul3_B 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLAR 111 (128)
T ss_dssp CSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred ccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEE
Confidence 34455556678999999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|+++
T Consensus 112 ~~G~~~~~~l~~~l~~~ 128 (128)
T 3ul3_B 112 KDHFVSSNDLIALIKKH 128 (128)
T ss_dssp ESSCCCHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHhC
Confidence 9998 999999999864
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=156.37 Aligned_cols=239 Identities=10% Similarity=-0.006 Sum_probs=168.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHH
Q 009096 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA-LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (543)
..|++++|..+++++.+..+.. + +. .+++++|+..|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---~-------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---F-------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---S-------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---c-------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4677888888888887765532 1 11 47788888877765 4567777777777777
Q ss_pred hcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcC
Q 009096 139 LCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNM 218 (543)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 218 (543)
|.+++. ++...++...+ ...+..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~---------------------~~~~~~~~~~~---------------a~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE---------------------AHANNRSLFHA---------------AKAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH---------------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH---------------------HHHHcCCHHHH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 755432 01111221111 345566778888888888888888888
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHH
Q 009096 219 PKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEAC 298 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~ 298 (543)
+.+.+...........+..+|.++.. |++++|+.+|++++.+.|...... .....+.++|.++...|+|++|+
T Consensus 103 l~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 103 SVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCCHHHHH
Confidence 77765554444445567777999999 999999999999998876432111 01222456899999999999999
Q ss_pred HHHHHHhccCCCC------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHccCHHHHHH
Q 009096 299 SAYGEGLKYDSYN------SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTK-----ALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 299 ~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 367 (543)
.+|++++++.|.+ ..++..+|.++..+|++++|+..|++++ ++|+... .+..++..+ ..|+.+.+..
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999986644 3478889999999999999999999999 9997642 344555544 4566554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=137.87 Aligned_cols=123 Identities=12% Similarity=0.138 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-------Chh-----HHhHHHHHHHHccCHHHHHHHHHHHHhh--
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY-------NSI-----LYCNRAICWSKMGLWENSIEDCNVALRI-- 341 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~-- 341 (543)
..+..+++.|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34555678999999999999999999999999999 433 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 342 -----QPNYTKAL----LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 342 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...++..+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 154 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999999988888887777765443
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=136.22 Aligned_cols=103 Identities=25% Similarity=0.441 Sum_probs=92.4
Q ss_pred eEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
...+.+.+.|...+. .++++++.||++||++|+.+.|.++++.++++++.|+.+|++++++++++|+|.++||+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 93 (122)
T 2vlu_A 14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLF 93 (122)
T ss_dssp CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence 444556677777664 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
+++|+++.++.|...+++.++|++++.
T Consensus 94 ~~~G~~~~~~~G~~~~~l~~~l~~~l~ 120 (122)
T 2vlu_A 94 MKEGDVKDRVVGAIKEELTAKVGLHAA 120 (122)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHHS
T ss_pred EeCCEEEEEEeCcCHHHHHHHHHHHhc
Confidence 999999999999878999999988653
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-18 Score=139.92 Aligned_cols=106 Identities=21% Similarity=0.406 Sum_probs=96.0
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.|.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++++++++++|||.++||+
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTF 103 (139)
T ss_dssp TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESEE
T ss_pred CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccEE
Confidence 44667777788887763 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++++|+++.++.|.+.+++.++|++++..
T Consensus 104 ~~~~~G~~~~~~~G~~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 104 FFLRDGQQVDKLVGANKPELHKKITAILDS 133 (139)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred EEEcCCeEEEEEeCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999987643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=154.72 Aligned_cols=278 Identities=13% Similarity=-0.009 Sum_probs=190.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc------hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcC--------CC
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN------AAYRSNRAATLTALGRLTEAVSDCEEAVRLD--------PG 114 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~ 114 (543)
..+..+|..+...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++++... |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 367889999999999999999999999876543 2447889999999999999999999999875 33
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC----C
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD----S 190 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~ 190 (543)
...++..+|.++...|++++|...+++++. ..+. .
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------------------~~~~~~~~~ 172 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIE-----------------------------------------VLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------HTTTSCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------------------------------HhhccCcHH
Confidence 445677788888888888888888766543 1111 0
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCCh-hHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPP-SQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA 269 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 269 (543)
....+..+|.++...|++++|...+++++...+.... ..........++.++...|++++|...+++++...|......
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 1234445566666666666666666665543222111 111111112234556778888888888888877665431110
Q ss_pred HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 009096 270 SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY------NSILYCNRAICWSKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 270 ~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 343 (543)
. ..+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...+++++.+.+
T Consensus 253 ~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 253 Q--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp H--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 0 00134688899999999999999998876432 235788899999999999999999999998754
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 344 NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 344 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.. .....+...| +.....+++++...|-+.-.
T Consensus 325 ~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 325 RT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred cc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCchHH
Confidence 21 1122333444 67778888888888875433
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=134.64 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=90.2
Q ss_pred CeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEE
Q 009096 409 EVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..+++ +.+.+.+. .++++++.||++||++|+.+.|.+++++++++++.|+.+|++ ++++++++|+|.++||+++
T Consensus 19 ~v~~l~~-~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~ 97 (124)
T 1faa_A 19 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 97 (124)
T ss_dssp SEEEECT-TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred ceEEecc-hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEE
Confidence 3455544 45555554 578999999999999999999999999999999999999998 6899999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+++|+++.++.|...+++.++|+++.
T Consensus 98 ~~~G~~~~~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 98 LKENSVVGEVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHHT
T ss_pred EeCCcEEEEEcCCCHHHHHHHHHHhh
Confidence 99999999999998999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=137.77 Aligned_cols=134 Identities=14% Similarity=0.189 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHH
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSI 332 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 332 (543)
..|++++..+|++...+ +.+|..+...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQL------------YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHH------------HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 46777888888877764 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 333 EDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 333 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......++...++..+.
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999888877777777765543
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=133.82 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=91.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..+++.+....++..++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++|++
T Consensus 14 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 93 (121)
T 2i1u_A 14 TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKD 93 (121)
T ss_dssp SEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEEC
Confidence 445555444445667788999999999999999999999999999964 9999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|+++.++.|. +.+++.++|++++.
T Consensus 94 g~~~~~~~G~~~~~~l~~~l~~~l~ 118 (121)
T 2i1u_A 94 GQPVKRIVGAKGKAALLRELSDVVP 118 (121)
T ss_dssp TEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999 89999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=144.18 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
..+..+|..+...|++++|+..|+++++.+|++... ++.+|.++...|++++|+..+++++..+| ++......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a------~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV------KLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH------HHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH------HHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 345667888999999999999999999999888554 44448899999999999999999999888 66543221
Q ss_pred HhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHH
Q 009096 273 TNVKMVVRARTRGNN-LFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY--TKAL 349 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~ 349 (543)
+.+ +...+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++
T Consensus 80 ------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 80 ------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp ------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred ------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 222 1222334468999999999999999999999999999999999999999999999876 5699
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..+|.++..+|+.++|+..|++++.
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999998875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-16 Score=144.88 Aligned_cols=248 Identities=9% Similarity=-0.059 Sum_probs=189.5
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcC-CHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc-C-CHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKG-NFVEALKLYDKAISMSPENAAYRSNRAATLTAL-G-RLTEAVSDC 105 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~ 105 (543)
....++....+++..+|.+..+|+.++.++...| .+++++.++.+++..+|++..+|+.++.++... + ++++++..+
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3345777888999999999999999999999999 599999999999999999999999999999998 8 999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 009096 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIA 185 (543)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 185 (543)
.++++.+|.+..+|...+.++...|.++.+ + ...+.++++.++++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~-----------~----------------------~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRI-----------S----------------------EAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCC-----------C----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcccccc-----------c----------------------hhhHHHHHHHHHHHHH
Confidence 999999999999999999998887654310 0 0123567788888888
Q ss_pred cCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCc
Q 009096 186 IGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSN 265 (543)
Q Consensus 186 ~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 265 (543)
.+|.+ ..+|..++.++..++... .. ...++++++++.+++..+|++
T Consensus 196 ~dp~N-~SAW~~R~~lL~~l~~~~--------------~~-------------------~~~~~eELe~~~~aI~~~P~n 241 (349)
T 3q7a_A 196 VDGRN-NSAWGWRWYLRVSRPGAE--------------TS-------------------SRSLQDELIYILKSIHLIPHN 241 (349)
T ss_dssp HCTTC-HHHHHHHHHHHTTSTTCC--------------CC-------------------HHHHHHHHHHHHHHHHHCTTC
T ss_pred hCCCC-HHHHHHHHHHHHhccccc--------------cc-------------------hHHHHHHHHHHHHHHHhCCCC
Confidence 87776 777776666666555420 00 012578999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhccC------CCChhHHhHHH
Q 009096 266 VEIASVLTNVKMVVRARTRGNNLFSSRR--------------------YSEACSAYGEGLKYD------SYNSILYCNRA 319 (543)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~------p~~~~~~~~la 319 (543)
..+|..+ ..++...|+ ..+-.+.....+... +.++.++..++
T Consensus 242 ~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 242 VSAWNYL------------RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHH------------HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHH------------HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 9998654 333444433 233333333333322 46678999999
Q ss_pred HHHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 009096 320 ICWSKMGLWENSIEDCNVAL-RIQPNYTKALLRRAVS 355 (543)
Q Consensus 320 ~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 355 (543)
.+|...|+.++|.++|+... +.+|-....|..++..
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 99999999999999999987 6788877777766554
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-18 Score=140.32 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=93.1
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..+ +.+.+...+..+++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|++
T Consensus 40 v~~l-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 118 (148)
T 3p2a_A 40 VINA-TAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRN 118 (148)
T ss_dssp CEEC-CTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceec-CHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEEC
Confidence 3443 446777777888999999999999999999999999999995 59999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|+++.++.|. +.++|.++|++++..
T Consensus 119 G~~~~~~~G~~~~~~l~~~l~~~l~~ 144 (148)
T 3p2a_A 119 GKMIDMLNGAVPKAPFDNWLDEQLSR 144 (148)
T ss_dssp TEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999 999999999987643
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=129.68 Aligned_cols=94 Identities=26% Similarity=0.453 Sum_probs=85.9
Q ss_pred hhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 417 EKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 417 ~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
+.|.. ....++++++.||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||++++++|+++.+
T Consensus 8 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (105)
T 1fb6_A 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKES 87 (105)
T ss_dssp TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEEE
Confidence 44555 445678999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhc
Q 009096 495 MINP-SHQFLEDSANLA 510 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~ 510 (543)
+.|. +.+++.++|+++
T Consensus 88 ~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 88 IIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHhh
Confidence 9998 999999999875
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-18 Score=131.29 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=89.6
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEM 495 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 495 (543)
.+.+.+.+..++++++.||++||++|+.+.|.++++.++++++.|+.+|++.+++++++|+|.++||+++|++|+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 85 (104)
T 2e0q_A 6 SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEI 85 (104)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhc
Confidence 45666767778899999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHHhcCC
Q 009096 496 INP-SHQFLEDSANLAPS 512 (543)
Q Consensus 496 ~g~-~~~~~~~~~~~~~~ 512 (543)
.|. +.+++.++|++++.
T Consensus 86 ~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 86 IGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp ESCCCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 998 99999999987653
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=137.42 Aligned_cols=104 Identities=17% Similarity=0.304 Sum_probs=92.9
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+.+..+.+.+.+...+.. +++++|.||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++
T Consensus 20 ~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 98 (133)
T 3cxg_A 20 SIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEF 98 (133)
T ss_dssp EEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred ccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEE
Confidence 345667777888887765 469999999999999999999999998887 79999999999999999999999999999
Q ss_pred EE--CCe--EEEEEcCCCHHHHHHHHHhcCC
Q 009096 486 YK--NGE--KLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~--~g~--~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
|+ ||+ ++.++.|.+.++|.++|++++.
T Consensus 99 ~~~~~g~g~~~~~~~G~~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 99 YFNLNNEWVLVHTVEGANQNDIEKAFQKYCL 129 (133)
T ss_dssp EEEETTEEEEEEEEESCCHHHHHHHHHHHSE
T ss_pred EEecCCCeEEEEEEcCCCHHHHHHHHHHHHH
Confidence 97 998 8899999999999999998764
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=142.51 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=89.4
Q ss_pred eEEeehhhhhhhcc-C-CCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 410 VEEISSLEKFKAAI-S-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+..+.+.+.|...+ . .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++||+++|
T Consensus 5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~ 84 (142)
T 1qgv_A 5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF 84 (142)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEE
Confidence 34455667777655 3 57899999999999999999999999999995 599999999999999999999999999999
Q ss_pred ECCeEEE---------EEcCC--CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKLK---------EMINP--SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~~---------~~~g~--~~~~~~~~~~~~~~~~ 514 (543)
++|+++. ++.|. +.+++.++|++.+...
T Consensus 85 ~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 85 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 9999987 45565 4899999999876543
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-18 Score=137.47 Aligned_cols=102 Identities=23% Similarity=0.293 Sum_probs=89.8
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-----CeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-----YVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+..++. +.|.+. ...++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+
T Consensus 9 v~~l~~-~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~ 87 (133)
T 1x5d_A 9 VIELTD-DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTI 87 (133)
T ss_dssp CEECCT-THHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEE
T ss_pred CEEcCH-hhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeE
Confidence 444444 555554 4668899999999999999999999999998884 599999999999999999999999999
Q ss_pred EEEECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
++|++|+.+.++.|. +.+++.++|++++.
T Consensus 88 ~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 88 KIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred EEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 999999999999998 99999999998754
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=130.29 Aligned_cols=98 Identities=18% Similarity=0.334 Sum_probs=89.1
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+.+.+..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 8 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (109)
T 2yzu_A 8 DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEV 87 (109)
T ss_dssp TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeee
Confidence 35555777778899999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCCC
Q 009096 495 MINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~~ 513 (543)
+.|. +.+++.++|++++..
T Consensus 88 ~~g~~~~~~l~~~l~~~l~~ 107 (109)
T 2yzu_A 88 LVGAQPKRNYQAKIEKHLPA 107 (109)
T ss_dssp EESCCCHHHHHHHHHTTC--
T ss_pred EeCCCCHHHHHHHHHHHhhh
Confidence 9999 999999999988753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-16 Score=142.79 Aligned_cols=202 Identities=13% Similarity=0.069 Sum_probs=176.0
Q ss_pred HHHhhhhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC----------hhHHHHHhhcCCCCCCCCChhHHH
Q 009096 163 RCAESRKIGDWK-TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ----------NEDADSCLSNMPKFEHYSPPSQVK 231 (543)
Q Consensus 163 ~~~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~ 231 (543)
........|.+. +|+..+.+++..+|++ ..+|+.++.++..++. +++++.++..++..+|.+
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~-ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn------ 107 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------ 107 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC------
Confidence 333344566665 7999999999999998 7888889999988876 689999999999999999
Q ss_pred HHHHHHHHHHHHhhcC--hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC
Q 009096 232 FLVWLLKLMFNISELR--FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR-YSEACSAYGEGLKYD 308 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~ 308 (543)
..+|..++.++...++ +++++.++.++++.+|.+..+|.. ++.+....|. ++++++++.++++.+
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~------------R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDY------------RRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 4567777889999884 899999999999999999999753 6888888888 699999999999999
Q ss_pred CCChhHHhHHHHHHHHc--------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------cCHH
Q 009096 309 SYNSILYCNRAICWSKM--------------GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-----------GRWS 363 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~ 363 (543)
|.+..+|.+++.++..+ +.++++++++.+++..+|++..+|+.+..++... +.++
T Consensus 176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 99999999999999988 5699999999999999999999998666666555 5689
Q ss_pred HHHHHHHHHHhcCCCChHHH
Q 009096 364 EAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 364 ~A~~~~~~al~~~p~~~~~~ 383 (543)
++++++++++++.|++.-..
T Consensus 256 ~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 256 SELESCKELQELEPENKWCL 275 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhCcccchHH
Confidence 99999999999999995443
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=134.47 Aligned_cols=93 Identities=16% Similarity=0.258 Sum_probs=83.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~ 501 (543)
.++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~ 115 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKA 115 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE-EEeCCCCHH
Confidence 467999999999999999999999999999975 99999999999999999999999999999 799988 67787 999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 009096 502 FLEDSANLAPSPVYKLP 518 (543)
Q Consensus 502 ~~~~~~~~~~~~~~~~~ 518 (543)
+|.++|++.......-+
T Consensus 116 ~l~~~l~~~~~~~~~~~ 132 (136)
T 2l5l_A 116 SFKKAIDEFLLKKEGHH 132 (136)
T ss_dssp HHHHHHHHHHTSCTTSS
T ss_pred HHHHHHHHHhhccCCCC
Confidence 99999999875544433
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=130.83 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=86.9
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+. ++++++.||++||++|+.+.|.++++++++ +++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 4466666666 789999999999999999999999999987 36999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhc
Q 009096 491 KLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~ 510 (543)
.+.++.|. +.++|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 99999998 999999999864
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=165.83 Aligned_cols=162 Identities=10% Similarity=-0.017 Sum_probs=122.1
Q ss_pred ccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHH
Q 009096 205 LHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTR 284 (543)
Q Consensus 205 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 284 (543)
.|++++|+..++++++.+|++.. .+..+|.++...|++++|+..|+++++.+|++..++ ..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~l 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV------------ARL 63 (568)
T ss_dssp -------------------CCHH------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHH------------HHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------HHH
Confidence 36778888888888888888754 344448888888999999999999999999887765 347
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cC
Q 009096 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL---GR 361 (543)
Q Consensus 285 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~ 361 (543)
|.++...|++++|++.|+++++.+|+++.++.++|.++..+|++++|++.|+++++++|++..++..+|.++..+ |+
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCChHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+++|.+.|+++++.+|++.....
T Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HHHHHHHHHHHHhcCCcccChHH
Confidence 99999999999999888655443
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=134.27 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhC------CCeEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRY------PYVHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~------~~~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
+..++ .+.|++.+ ..+++++|.||++||++|+.+.|.++++++.+ +++.|+.||++++++++++|+|.++||
T Consensus 17 v~~l~-~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 95 (127)
T 3h79_A 17 VVELT-DETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPT 95 (127)
T ss_dssp CEECC-TTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred eEECC-hhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCE
Confidence 44444 45566655 46899999999999999999999999998653 359999999999999999999999999
Q ss_pred EEEEECCeEE--EEEcCC-CHHHHHHHHHhc
Q 009096 483 FKIYKNGEKL--KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 483 ~~~~~~g~~~--~~~~g~-~~~~~~~~~~~~ 510 (543)
+++|++|+.. .++.|. +.++|.++|++.
T Consensus 96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126 (127)
T ss_dssp EEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence 9999988664 467787 999999999864
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=132.79 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=88.2
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..+ +.+.|.+.+.. .+++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|
T Consensus 8 ~v~~l-~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 84 (126)
T 1x5e_A 8 NVRVI-TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHC 84 (126)
T ss_dssp SEEEC-CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred ccEEe-cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEE
Confidence 34445 44667776653 49999999999999999999999999886 599999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
++|+ +.++.|. +.++|.++|++.+...
T Consensus 85 ~~G~-~~~~~G~~~~~~l~~~l~~~~~~~ 112 (126)
T 1x5e_A 85 KDGE-FRRYQGPRTKKDFINFISDKEWKS 112 (126)
T ss_dssp ETTE-EEECCSCCCHHHHHHHHHTCGGGG
T ss_pred eCCe-EEEeecCCCHHHHHHHHHHHhhcc
Confidence 9999 5788898 9999999999886543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-17 Score=150.97 Aligned_cols=168 Identities=15% Similarity=0.025 Sum_probs=148.8
Q ss_pred CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH
Q 009096 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE 267 (543)
Q Consensus 188 p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 267 (543)
|+. ...+..+|..+...|++++|+..|+++++.+|++...+ +.+|.++...|++++|+..+++++..+|+...
T Consensus 114 p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~------~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 186 (287)
T 3qou_A 114 PRE-EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG------LLLAETLIALNRSEDAEAVLXTIPLQDQDTRY 186 (287)
T ss_dssp CCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH------HHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred CCc-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH------HHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence 544 67788899999999999999999999999999996544 44499999999999999999999999996543
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 009096 268 IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-- 345 (543)
Q Consensus 268 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 345 (543)
.. ...+..+...++.++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 187 ~~------------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 187 QG------------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HH------------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HH------------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 32 2256678888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 346 TKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 346 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
..++..++.++..+|+.++|...|++++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88999999999999999999999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-17 Score=140.92 Aligned_cols=168 Identities=14% Similarity=0.027 Sum_probs=119.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
..+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3445666666666666666666666666666666666666666666666666666666666666666 554433333221
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
.. ..+....|+..++++++.+|++ +.+++.+|.++...|
T Consensus 84 ~~----------------------------------------~~~~~~~a~~~~~~al~~~P~~-~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 84 LH----------------------------------------QQAAESPELKRLEQELAANPDN-FELACELAVQYNQVG 122 (176)
T ss_dssp HH----------------------------------------HHHTSCHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTT
T ss_pred HH----------------------------------------hhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc
Confidence 10 1112234678889999999987 788999999999999
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
++++|+..|+++++.+|+.... .++..+|.++...|+.++|+..|++++.
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~----~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDG----EVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTT----HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChH----HHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999976331 1233449999999999999999998864
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=134.04 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=89.1
Q ss_pred CeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 409 EVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 409 ~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
.+..++. +.|.. +...++++++.||++||++|+.+.|.++++++++++ +.|+.+|++++..++++|+|.++||+++|
T Consensus 18 ~v~~l~~-~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 96 (130)
T 2dml_A 18 DVIELTP-SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIF 96 (130)
T ss_dssp SSEECCT-TTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEE
T ss_pred CcEECCH-HHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEE
Confidence 3455554 55555 556788999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCeE-EEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEK-LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~-~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|.. +.++.|. +.+++.++|.+.+
T Consensus 97 ~~~~~~~~~~~G~~~~~~l~~~l~~~l 123 (130)
T 2dml_A 97 GANKNKPEDYQGGRTGEAIVDAALSAL 123 (130)
T ss_dssp SSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred eCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence 87765 7888898 9999999998765
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=133.99 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=80.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQ 501 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~ 501 (543)
.+++++|.||++||++|+.+.|.++++++++++ +.|+.+|++++++++++|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~ 128 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKE 128 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHH
Confidence 478999999999999999999999999999985 99999999999999999999999999999 577776 78888 999
Q ss_pred HHHHHHHhcCC
Q 009096 502 FLEDSANLAPS 512 (543)
Q Consensus 502 ~~~~~~~~~~~ 512 (543)
+|.++|++++.
T Consensus 129 ~l~~~l~~~l~ 139 (141)
T 3hxs_A 129 QLKGYIDKVLL 139 (141)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHc
Confidence 99999998865
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=145.48 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=92.2
Q ss_pred hhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 415 SLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 415 ~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
+.+.|.+ ++..+++++|.||++||++|+.+.|.++++++++++ +.|+.||++.++.++++|+|.++||+++|++|+++
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 4455555 577889999999999999999999999999999987 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
.++.|. +.+++.++|++.+....
T Consensus 98 ~~~~G~~~~~~l~~~l~~~l~~~~ 121 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDANLAGSA 121 (222)
T ss_dssp EEEESCCCHHHHHHHHHHHSCCSC
T ss_pred EEeccccChHHHHHHHHhhccccc
Confidence 999999 99999999999886543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=127.66 Aligned_cols=114 Identities=25% Similarity=0.420 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRREL------PGDNEVAESLHNAQVA 392 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 392 (543)
+|++++|+..|+++++++ |+++.++..+..+...
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999 9999999888877654
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=132.85 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=87.4
Q ss_pred CCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+.+..+ +.+.|.+.+.. +++++|+||++||++|+.+.|.+++++.+++++.|+.||+++.. ++|+|.++||++
T Consensus 10 g~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~Pt~~ 85 (135)
T 2dbc_A 10 GELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCLPTIF 85 (135)
T ss_dssp CSCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCCSEEE
T ss_pred CceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCCCEEE
Confidence 446667 56677766643 35899999999999999999999999999999999999999875 799999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~~ 511 (543)
+|++|+++.++.|. +.++|+.+|+++-
T Consensus 86 ~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 86 VYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp EESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred EEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 99999999999997 5899999999863
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=133.87 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=89.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
+..++..+....++..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++
T Consensus 5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (122)
T 3aps_A 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQY 84 (122)
T ss_dssp SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEE
T ss_pred hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeC
Confidence 44555444435667778899999999999999999999999999997 59999999999999999999999999999987
Q ss_pred CeEEEEEcCC-----CHHHHHHHHHhcCCC
Q 009096 489 GEKLKEMINP-----SHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~~~~~~~g~-----~~~~~~~~~~~~~~~ 513 (543)
|..+.++.|. +.+++.++|++.+..
T Consensus 85 ~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~ 114 (122)
T 3aps_A 85 ERAKKSIWEEQINSRDAKTIAALIYGKLET 114 (122)
T ss_dssp EGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred CCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence 7667777763 999999999987644
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=144.63 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=171.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhH-------HHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNR-------AATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
....++..|..+ ..++++.|...|.+++..+|+.+++|..+ +.++...++..+++..+++++.+.|....++
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 345667777775 57888888888888888888888888888 7888888888888888888888888776665
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
+.+.-+| |+ +. .--.....+...++
T Consensus 85 ~~~~g~y---~~-----------~~-----------------------------------------~~v~~r~dl~LayA 109 (282)
T 4f3v_A 85 IAIGGLY---GD-----------IT-----------------------------------------YPVTSPLAITMGFA 109 (282)
T ss_dssp EECCTTT---CC-----------CE-----------------------------------------EECSSHHHHHHHHH
T ss_pred hccCCcc---cc-----------cc-----------------------------------------cccCCHhHHHHHHH
Confidence 5411111 00 00 00011134555667
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 279 (543)
.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+++....+..... .
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~----------~ 172 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-------VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG----------A 172 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH----------H
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-------HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH----------H
Confidence 888888888888888888887776542 34455888899999999999998776653221100 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYD--SY-NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
..+.+|.++..+|++++|+.+|++++.-. |. .+.+++++|.++.++|+.++|...|++++..+|+ ..++..|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 12448999999999999999999998654 55 5679999999999999999999999999999999 77665553
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=133.19 Aligned_cols=97 Identities=23% Similarity=0.400 Sum_probs=82.1
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.|...+..++.+++.||++||++|+.+.|.+++++.+++ ++.|+.+|++.++.++++|+|.++||+++|++|+++.+
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 119 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVAT 119 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEE
Confidence 35555555444449999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcCC
Q 009096 495 MINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~~ 512 (543)
+.|. +.+++.++|++++.
T Consensus 120 ~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 120 WVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EESCCCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHc
Confidence 9999 99999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-18 Score=163.79 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=153.6
Q ss_pred hcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHH------------HccChhHHHHHhhcCCCCCCCCChhHHHH
Q 009096 169 KIGDWKTVLRETDA----AIAIGVDSSPQLVACKAEAHL------------KLHQNEDADSCLSNMPKFEHYSPPSQVKF 232 (543)
Q Consensus 169 ~~~~~~~A~~~~~~----~l~~~p~~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 232 (543)
..+.+++|+..+.. ++.+.|.. .+..+|.... .++++++|+..+++++...|.. .
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~------a 147 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ------S 147 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH------H
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH------H
Confidence 34577788888877 77777764 2333343322 4566677777777766555544 3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH----HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE----IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..+..+|.++...|++++|+..|++++.+.|++.. ... .........+.++|.++...|++++|+..|+++++++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ-KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45666699999999999999999999999999830 000 0000112234678999999999999999999999999
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHh
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA-VRDYEALRR 374 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 374 (543)
|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 456666654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=133.56 Aligned_cols=124 Identities=28% Similarity=0.385 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------------CCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKY------------------DSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
.+..+..+|..++..|+|++|+..|.+++.. +|.+..++.++|.||..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445677999999999999999999999998 6777799999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhhhhh
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDN-EVAESLHNAQVALKKSRGEF 400 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~l~~~~~~~ 400 (543)
+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++ .+...+..+...++......
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 77888888888776655443
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=131.93 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=90.2
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+..++++++.||++||++|+.+.|.+++++++++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 13 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred chhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 446667777778899999999999999999999999999884 4899999999999999999999999999999999
Q ss_pred EE--EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KL--KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~--~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+ .++.|. +.+++.++|+++++++
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~~~~ 119 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred cCCcccccCccCHHHHHHHHHhccCCC
Confidence 87 888898 9999999999987654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=159.02 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=152.4
Q ss_pred HHccChhHHHHHhhc----CCCCCCCCChhHHHHHHHHHHHHHHH------------hhcChHHHHHHHHHHhhcCCCcH
Q 009096 203 LKLHQNEDADSCLSN----MPKFEHYSPPSQVKFLVWLLKLMFNI------------SELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
...+.+++|+..+.. ++.+.|.... ...|.... .++++++|+..+++++..+|+..
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~ay--------g~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a 147 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSYAF--------GSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS 147 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTTTT--------TTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCcccc--------CcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHH
Confidence 345678899999998 8888887521 11132222 56788889888888888777766
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHH
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENS 331 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A 331 (543)
..+ ..+|.+++..|+|++|+..|++++++.|++ ..++.++|.++..+|++++|
T Consensus 148 ~~~------------~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 148 TIV------------KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHH------------HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 654 458999999999999999999999999998 59999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 332 IEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 332 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..+...+++....
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888766543
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=131.70 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=79.4
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEe----CcCcHHHHHHcCCCcccEEEEEECC
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVD----VEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d----~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+.+.+...+..++++++.||++||++|+.+.|.+++++++++. +.++.++ ++..+.++++|||.++||+++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G 97 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG 97 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETT
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECC
Confidence 4566777777788999999999999999999999999988753 5444222 2234579999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHHh
Q 009096 490 EKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 490 ~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+++.++.|. +.++|.++|++
T Consensus 98 ~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 98 QINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp EEEEECCTTCCHHHHHHHHTC
T ss_pred EEEEEecCCCCHHHHHHHhhC
Confidence 999999998 99999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=125.82 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-------KALL 350 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 350 (543)
+..+.++|..++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344577999999999999999999999999999999999999999999999999999999999988763 5889
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 351 RRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 351 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
++|.++..+|++++|+++|+++++..|+ +++...+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 9999999999999999999999999885 55554443
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-18 Score=138.74 Aligned_cols=108 Identities=22% Similarity=0.387 Sum_probs=96.3
Q ss_pred CCeEEeehhhhhhhccC----CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAIS----SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~----~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.+.+.+. .++++++.||++||++|+.+.|.++++..+++++.|+.+|+++++.++++|+|.++||+
T Consensus 14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 93 (130)
T 1wmj_A 14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTF 93 (130)
T ss_dssp SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCC
T ss_pred cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceE
Confidence 34556666677777664 47899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCCCCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPSPVY 515 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (543)
+++++|+++.++.|.+.+++.++|++++....
T Consensus 94 ~~~~~g~~~~~~~g~~~~~l~~~l~~~~~~~~ 125 (130)
T 1wmj_A 94 LFIKDGAEADKVVGARKDDLQNTIVKHVGATA 125 (130)
T ss_dssp CBCTTTTCCBCCCTTCTTTHHHHHHHHTSSSC
T ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHHHhccC
Confidence 99999999999999988999999999886543
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-17 Score=141.44 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=91.7
Q ss_pred CCCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+.+...|.+.+.. +++++|.||++||++|+.+.|.+.+++.+|+++.|++||++ ++.++.+|+|.++||+
T Consensus 98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PTl 176 (217)
T 2trc_P 98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPTL 176 (217)
T ss_dssp CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSEE
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCEE
Confidence 3557777677777777643 37999999999999999999999999999999999999999 8889999999999999
Q ss_pred EEEECCeEEEEEcCC-CH-------HHHHHHHHhc
Q 009096 484 KIYKNGEKLKEMINP-SH-------QFLEDSANLA 510 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~-~~-------~~~~~~~~~~ 510 (543)
++|++|+++.+++|. +. ++|+.+|.++
T Consensus 177 ~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred EEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 999999999999998 54 8999999875
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=126.96 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=71.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCc--HHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEES--LAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
+.+.++|+||++||++|+.+.|.+....... ..+.+.++|++++ +.++.+++|.++||+++|+||+++.|++|+
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~ 96 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP 96 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence 3478999999999999999987543322111 1267889999876 579999999999999999999999999999
Q ss_pred CHHHHHHHHHhcC
Q 009096 499 SHQFLEDSANLAP 511 (543)
Q Consensus 499 ~~~~~~~~~~~~~ 511 (543)
++++|..+|++.+
T Consensus 97 ~~~~f~~~L~~~l 109 (116)
T 3dml_A 97 GEDFFWPMLARLI 109 (116)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998764
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-17 Score=141.39 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=90.9
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+...+...+..+++++|.||++||++|+.+.|.++++++++++ +.|+.||+++++.++++|+|.++||+++|++|+++.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 4466667677789999999999999999999999999999976 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcCCC
Q 009096 494 EMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~~~ 513 (543)
++.|. +.++|.++|++.+.+
T Consensus 183 ~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp ECCSCCCHHHHHHHHHHHHHC
T ss_pred EecCCCCHHHHHHHHHHhCcc
Confidence 99998 999999999987644
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-16 Score=159.31 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=135.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChH
Q 009096 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFE 249 (543)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 249 (543)
.|++++|+..++++++.+|++ ..++..+|.++...|++++|+..|+++++.+|++... +..+|.++...|+++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA------VARLGRVRWTQQRHA 74 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH------HHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHCCCHH
Confidence 478999999999999999987 7889999999999999999999999999999998554 455599999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc---c
Q 009096 250 NAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM---G 326 (543)
Q Consensus 250 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g 326 (543)
+|+..|+++++.+|++..++ ..+|.++...|++++|++.|+++++.+|++..++.++|.++..+ |
T Consensus 75 ~A~~~~~~al~~~p~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIA------------LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHhcCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999998775 34799999999999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 327 LWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 327 ~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
++++|+..|+++++.+|++...+..++
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999999999999999999988887766
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-16 Score=129.98 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhh
Q 009096 361 RWSEAVRDYEALRRELPGDNE--VAESLHNAQVALKKSR 397 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~l~~~~ 397 (543)
++++|+.+|+++++++|+++. +...+..+...+++..
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4555555555555443
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=141.61 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=90.9
Q ss_pred CCCeEEeehhhhhhhccC---CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 407 SGEVEEISSLEKFKAAIS---SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 407 ~~~~~~~~~~~~~~~~i~---~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+.+..+.+...|...+. .+++++|.||++||++|+.+.|.|.+++.+|+++.|++||++. ..++.+|+|.++||+
T Consensus 111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~PTl 189 (245)
T 1a0r_P 111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLPTL 189 (245)
T ss_dssp CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCSEE
T ss_pred CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCCEE
Confidence 356777767777877773 3779999999999999999999999999999999999999987 678999999999999
Q ss_pred EEEECCeEEEEEcCC--------CHHHHHHHHHhcC
Q 009096 484 KIYKNGEKLKEMINP--------SHQFLEDSANLAP 511 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~--------~~~~~~~~~~~~~ 511 (543)
++|++|+++.+++|+ +.+.|+.+|.++-
T Consensus 190 l~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 190 LVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp EEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred EEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 999999999999986 2467999998863
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-15 Score=121.50 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
+++.+|.++...|++++|+..+++++...|++...+ ..+|.++...|++++|+..+++++...|.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW------------YNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHH------------HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 355669999999999999999999999999987764 34799999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 379 (543)
++..+|.++...|++++|+..+++++...|++..++..+|.++...|++++|...++++++.+|++
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=133.13 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred CCeEEeehhhhhhhccCC--CCceeeeeeC-------CCCccccchhHhHHHHHhhCC------CeEEEEEeCcCcHHHH
Q 009096 408 GEVEEISSLEKFKAAISS--PGVSLVHFKE-------ASSEKCEEISPFVNLLCVRYP------YVHFFKVDVEESLAIA 472 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~--~~~~lv~f~~-------~~c~~c~~~~p~l~~l~~~~~------~~~~~~~d~~~~~~~~ 472 (543)
..+..++ ...|++.+.. +.+++|+||+ .||++|+++.|.++++++++. .+.|++||+|++++++
T Consensus 18 ~~vi~lt-~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la 96 (178)
T 3ga4_A 18 TGVITVT-ADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV 96 (178)
T ss_dssp TSEEECC-TTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred CCCEECC-HHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence 3455554 4566676643 5579999999 499999999999999999874 4999999999999999
Q ss_pred HHcCCCcccEEEEEECCeEE------------EEE----c-CCCHHHHHHHHHhcCCCC
Q 009096 473 KSEGVRTVPTFKIYKNGEKL------------KEM----I-NPSHQFLEDSANLAPSPV 514 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~------------~~~----~-g~~~~~~~~~~~~~~~~~ 514 (543)
++|||+++||+++|++|... .++ . |.+.+.|.+||.+.+...
T Consensus 97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~ 155 (178)
T 3ga4_A 97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS 155 (178)
T ss_dssp HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC
T ss_pred HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC
Confidence 99999999999999988532 233 2 459999999999876643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=140.97 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=148.5
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..++.+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+..+++++..+|+... ....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~------~~~~ 190 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY------QGLV 190 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH------HHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH------HHHH
Confidence 457788999999999999999999999999988 788999999999999999999999999999995422 2333
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--hhHH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN--SILY 315 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 315 (543)
.+..+...++.++|+..|++++..+|++..++ +.+|.++...|++++|+..|+++++.+|++ ..++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~------------~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALA------------TQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHH------------HHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 36678888999999999999999999999986 347999999999999999999999999998 8899
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+++.++..+|+.++|...|++++.
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=132.59 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=121.5
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAIC 321 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 321 (543)
+...|++++|+..+++++..+|++..++ ..+|.++...|++++|+.+|+++++.+|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQW------------ALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567899999999999999999998875 3479999999999999999999999999999999999999
Q ss_pred -HHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 322 -WSKMGLW--ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 322 -~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.....+..+
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 8899999 9999999999999999999999999999999999999999999999999998766554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=134.80 Aligned_cols=179 Identities=15% Similarity=0.113 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
.+..++.+|..+...|++++|+..|+++++..|.++.. ..+++.+|.++...|++++|+..|+++++.+|++..+..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS---QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 47889999999999999999999999999999988653 346777899999999999999999999999999986533
Q ss_pred HHHhHHHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHhccCCCChhHH-----------------
Q 009096 271 VLTNVKMVVRARTRGNNLFS------------------SRRYSEACSAYGEGLKYDSYNSILY----------------- 315 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~----------------- 315 (543)
.+ +.+|.++.. .|++++|+..|+++++.+|++..++
T Consensus 80 a~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 80 VM---------YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp HH---------HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 32 347888875 5799999999999999999987655
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
..+|.+|...|++++|+..|+++++..|+++ ++++.+|.++.++|++++|++.++++....|++.+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 5789999999999999999999999999986 78999999999999999999999999999998753
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-17 Score=131.87 Aligned_cols=102 Identities=11% Similarity=0.204 Sum_probs=87.4
Q ss_pred EeehhhhhhhccCC--CCceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeC----cCcHHHHHHcCCCcccE
Q 009096 412 EISSLEKFKAAISS--PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDV----EESLAIAKSEGVRTVPT 482 (543)
Q Consensus 412 ~~~~~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~----~~~~~~~~~~~v~~~Pt 482 (543)
.+.+.+.+...+.. ++++++.||++||++|+.+.|.+ .++.+.++++.|+.+|+ +....++++|+|.++||
T Consensus 15 ~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt 94 (134)
T 2fwh_A 15 QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 94 (134)
T ss_dssp ECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred EecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence 35555666665543 78999999999999999999998 99999999999999999 56788999999999999
Q ss_pred EEEE-ECCeEE--EEEcCC-CHHHHHHHHHhcCCC
Q 009096 483 FKIY-KNGEKL--KEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 483 ~~~~-~~g~~~--~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++| ++|+++ .++.|. +.++|.++|++....
T Consensus 95 ~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~ 129 (134)
T 2fwh_A 95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129 (134)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC---
T ss_pred EEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCcc
Confidence 9999 799998 789998 999999999987543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=128.47 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=106.3
Q ss_pred CCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 35 NNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
..+++++..+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+..|+++++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999987
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=142.25 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=142.5
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.++..++.+|..++..|++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS----SPQLVACKAE 200 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~a~ 200 (543)
++..+|++++|+..|+++++ .+|++ ...++. ..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~-----------------------------------------l~p~~~~~~~~~~~~--~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS-----------------------------------------LAKEQRLNFGDDIPS--AL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------------------------HHHHTTCCCCSHHHH--HH
T ss_pred HHHHcCCHHHHHHHHHHHHH-----------------------------------------hCccchhhHHHHHHH--HH
Confidence 99999999999988866543 22211 011111 11
Q ss_pred HHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHH
Q 009096 201 AHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVR 280 (543)
Q Consensus 201 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 280 (543)
.......+... .....+.+......+ +.+ ..|++++|++.++++++.+|++......
T Consensus 118 ~~~~~~~~~~~------~~~~~~~~~~i~~~l------~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~--------- 174 (281)
T 2c2l_A 118 RIAKKKRWNSI------EERRIHQESELHSYL------TRL--IAAERERELEECQRNHEGHEDDGHIRAQ--------- 174 (281)
T ss_dssp HHHHHHHHHHH------HHTCCCCCCHHHHHH------HHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHH---------
T ss_pred HHHHHHHHHHH------HHHHHhhhHHHHHHH------HHH--HHHHHHHHHHHHHhhhccccchhhhhhH---------
Confidence 11111111111 112344444433333 332 3688899999999999999987755432
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHhcc
Q 009096 281 ARTRGNNLFSS-RRYSEACSAYGEGLKY 307 (543)
Q Consensus 281 ~~~~g~~~~~~-~~~~~A~~~~~~al~~ 307 (543)
++..+... +.+++|.+.|.++.+.
T Consensus 175 ---l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 175 ---QACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23334443 6788888888888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=149.45 Aligned_cols=341 Identities=8% Similarity=-0.042 Sum_probs=230.9
Q ss_pred CCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC---HHHHHHHHHHHHh
Q 009096 34 NNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR---LTEAVSDCEEAVR 110 (543)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 110 (543)
+..++..+..+|.+...|..++......+.++.|...|++++...|.....|...+..-...++ ++.+...|++++.
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 3345677889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCC--CChhHHHHHHHHHHHhCCH----HH----HHHHhcCCCC--CC----ChHHHhHHHHHHHHHHHHHhhhhcCCHH
Q 009096 111 LDP--GYNRAHQRLASLYFRLGQV----EN----ARHHLCFPGH--HP----DPNELLKLQSFEKHLNRCAESRKIGDWK 174 (543)
Q Consensus 111 ~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~a~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (543)
..| .++..|..........++. ++ ....|++++. .. ....|...................++.+
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 984 5777888877766665543 23 3366776654 11 1222221111100000000001123345
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHH-------------HHHccChhH------------------------------
Q 009096 175 TVLRETDAAIAIGVDSS-PQLVACKAEA-------------HLKLHQNED------------------------------ 210 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~-~~~~~~~a~~-------------~~~~~~~~~------------------------------ 210 (543)
.+...|.+++.. |... ..+|...... -....+|+.
T Consensus 212 ~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 212 YIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 555666666643 3211 1111100000 000011222
Q ss_pred -------------------------------------HHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHH-
Q 009096 211 -------------------------------------ADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAV- 252 (543)
Q Consensus 211 -------------------------------------A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~- 252 (543)
....|++++...|..+.. |+..+..+...|+.++|.
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~l------W~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEI------WFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHH------HHHHHHHHHHHSCCTTHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHhcCcHHHHHH
Confidence 223344444444444333 333377777778888886
Q ss_pred HHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----------CCC-----------
Q 009096 253 SSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-----------DSY----------- 310 (543)
Q Consensus 253 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~----------- 310 (543)
..|++++...|.+...+. ..+......|++++|.+.|++++.. .|.
T Consensus 365 ~il~rAi~~~P~s~~Lwl------------~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAF------------SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 888888888888776653 3577788889999999999999975 243
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRI-QPNYTKALLRRAVSNEKLGR-WSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
...+|...+.+..+.|+.+.|...|.+|++. .+.....|...|.+....++ ++.|...|+++++..|+++.++..+..
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3457888999999999999999999999988 44557888888888877754 899999999999999999999866665
Q ss_pred HHHHH
Q 009096 389 AQVAL 393 (543)
Q Consensus 389 ~~~~l 393 (543)
.....
T Consensus 513 fe~~~ 517 (679)
T 4e6h_A 513 FLIYV 517 (679)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 44443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=126.00 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=104.0
Q ss_pred CCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 35 NNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
..+.+++..+|.+++.++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+..|++++.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999886
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-17 Score=133.44 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=83.7
Q ss_pred eEEeehhhhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCC------c
Q 009096 410 VEEISSLEKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVR------T 479 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~------~ 479 (543)
+..++ .+.|.+.+... .++++.||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|. +
T Consensus 9 v~~l~-~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~ 87 (137)
T 2dj0_A 9 IKYFN-DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87 (137)
T ss_dssp CEECC-TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSC
T ss_pred EEEcc-HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCC
Confidence 33443 45666666443 389999999999999999999999999995 5999999999999999999999 9
Q ss_pred ccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 480 VPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 480 ~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+||+++|++|+++.++.|. +.+++.++|++
T Consensus 88 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 88 LPTLILFQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp SSEEEEESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred CCEEEEEECCEEEEEecCcCchHHHHHHHhc
Confidence 9999999999999999997 77766666543
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=129.86 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=87.1
Q ss_pred eEEeehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..++ .+.|...+. .+++++|.||++||++|+.+.|.|++++++++ ++.|+.+|++++..++++|+|.++||+++
T Consensus 9 v~~l~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 87 (133)
T 2dj3_A 9 VKVVV-GKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYF 87 (133)
T ss_dssp SEECC-TTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEE
T ss_pred eEEEc-CCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEE
Confidence 44444 355666654 47899999999999999999999999999885 59999999999999999999999999999
Q ss_pred EECCeEEE--EEc-CC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLK--EMI-NP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~--~~~-g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|..+. ++. |. +.++|.++|++++...
T Consensus 88 ~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 88 APSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp ECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred EeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 99886543 455 65 9999999999987554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=158.68 Aligned_cols=134 Identities=8% Similarity=-0.105 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc
Q 009096 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR--RYSEACSAYGEGLKYDSYNSILYCNRAICWSKM 325 (543)
Q Consensus 248 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 325 (543)
++++++.++++++.+|++..+|. .++.++...+ ++++|++++.++++.+|.+..+|.+++.+...+
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~------------hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWH------------HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 56666666666666666666653 2566666666 556666666666666666666666666666666
Q ss_pred c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 326 G-LWENSIEDCNVALRIQPNYTKALLRRAVSNEKL--------------GRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 326 g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
| .++++++++.++++.+|.+..+|..++.++..+ +.+++|++++.+|+.++|++..+|..+..+.
T Consensus 157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 6 666666666666666666666666666666653 4556666666666666666666666655554
Q ss_pred HHH
Q 009096 391 VAL 393 (543)
Q Consensus 391 ~~l 393 (543)
...
T Consensus 237 ~~~ 239 (567)
T 1dce_A 237 GRA 239 (567)
T ss_dssp SCC
T ss_pred hcC
Confidence 443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-15 Score=129.81 Aligned_cols=185 Identities=9% Similarity=-0.080 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc----ChHH
Q 009096 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL----RFEN 250 (543)
Q Consensus 175 ~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g----~~~~ 250 (543)
+|+..|+++.+.+ .+.+++.+|.+|...+++++|+.+|+++.+. .++. +++.+|.++.. + ++++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~------a~~~lg~~y~~-~g~~~~~~~ 71 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGD------ALALLAQLKIR-NPQQADYPQ 71 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHH------HHHHHHHHTTS-STTSCCHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH------HHHHHHHHHHc-CCCCCCHHH
Confidence 4677888888762 3788999999999999999999999999765 3433 45555989888 7 8999
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC--CChhHHhHHHHHHHH
Q 009096 251 AVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDS--YNSILYCNRAICWSK 324 (543)
Q Consensus 251 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 324 (543)
|+.+|+++.+ +.++.+. .++|.++.. .+++++|+.+|+++++..| .++.++++||.+|..
T Consensus 72 A~~~~~~A~~--~g~~~a~------------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 72 ARQLAEKAVE--AGSKSGE------------IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHHH--TTCHHHH------------HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHH------------HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999999965 4566554 457999988 8999999999999999988 459999999999999
Q ss_pred ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-c-----CHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 325 ----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-G-----RWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 325 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
.+++++|+.+|+++++. |.++.+++++|.+|..- | ++++|+.+|+++.+.. ++.+...+..
T Consensus 138 g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 138 GVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp TSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 89999999999999998 77888999999999864 3 8999999999999985 4555544543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=121.14 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChH
Q 009096 362 WSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~ 381 (543)
+++|+..|+++++++|++..
T Consensus 101 ~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999998764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=133.94 Aligned_cols=150 Identities=20% Similarity=0.185 Sum_probs=118.1
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh------
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS------ 312 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------ 312 (543)
+......|++++|.+.+.......+.. +..+..+|..++..|+|++|+..|+++++..|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQS------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 334555666666666555433322222 22345689999999999999999999999988887
Q ss_pred ----------hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 313 ----------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 313 ----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.++.++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 009096 383 AESLHNAQVALKKSRGEF 400 (543)
Q Consensus 383 ~~~l~~~~~~l~~~~~~~ 400 (543)
+..+..+...+++..+..
T Consensus 159 ~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988887665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=123.78 Aligned_cols=107 Identities=26% Similarity=0.362 Sum_probs=98.2
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------h
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN-------R 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~ 117 (543)
++.+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++. .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999988763 5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNEL 151 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~ 151 (543)
++.++|.++..+|++++|+..|++++. .+++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 788999999999999999999999987 6666543
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-16 Score=115.55 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=74.4
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
.+.++.||++||++|+.+.|.+++++++++ ++.|..+|++++++++++|||.++||+++ ||++ ++.|. +.+++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~ 78 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV 78 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence 467899999999999999999999999998 59999999999999999999999999998 9987 78898 999999
Q ss_pred HHHHhc
Q 009096 505 DSANLA 510 (543)
Q Consensus 505 ~~~~~~ 510 (543)
++|++.
T Consensus 79 ~~l~~~ 84 (85)
T 1fo5_A 79 EAIKKR 84 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-16 Score=115.63 Aligned_cols=80 Identities=20% Similarity=0.234 Sum_probs=74.2
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
..++.||++||++|+.+.|.+++++++++ ++.|..+|++++++++++|||.++||+++ ||++ ++.|. +.+++.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 46889999999999999999999999998 59999999999999999999999999998 9987 78898 9999999
Q ss_pred HHHhcC
Q 009096 506 SANLAP 511 (543)
Q Consensus 506 ~~~~~~ 511 (543)
+|++.+
T Consensus 79 ~l~~~l 84 (85)
T 1nho_A 79 AINDEM 84 (85)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-15 Score=133.73 Aligned_cols=190 Identities=11% Similarity=-0.063 Sum_probs=149.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSA 255 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 255 (543)
|+..+++.+...+.. ...+..+|.++...|++++|++.+.+.+..+|... .+......+.++..+|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~----~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG----TTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT----HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC----cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455556555554333 45567889999999999999999999988877211 1344455599999999999999999
Q ss_pred HHHhhcCCC-----cHHHHHHHHhHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHcc
Q 009096 256 EKAGLLDYS-----NVEIASVLTNVKMVVRARTRGNNLFSSR--RYSEACSAYGEGLKYDSY--NSILYCNRAICWSKMG 326 (543)
Q Consensus 256 ~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 326 (543)
+++.+.+|+ +..... + ..|++....| ++.+|...|+++.+..|+ ....+++ ++.++|
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~-L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g 225 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILN-L----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR 225 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHH-H----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT
T ss_pred HHHHhcCccccccchHHHHH-H----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC
Confidence 999999983 332221 1 1354455555 999999999999988887 3444444 899999
Q ss_pred CHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHH
Q 009096 327 LWENSIEDCNVALRI----------QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 327 ~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 386 (543)
++++|...++.+++. +|++++++.+++.+...+|+ +|.++++++.+.+|+++-+....
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999988876 58899999999999999998 99999999999999999887544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=128.36 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
.++.+|..+...|++++|+..|++++ +| ++.++ ..+|.++...|++++|+..|+++++.+|+++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRIC------------FNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 45566999999999999999999986 33 33332 45899999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYT----------------KALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+++++|.++..+|++++|+..|+++++..|++. .+++++|.++..+|++++|+.+|+++++++|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999888876 9999999999999999999999999999999
Q ss_pred CChH
Q 009096 378 GDNE 381 (543)
Q Consensus 378 ~~~~ 381 (543)
++..
T Consensus 153 ~~~~ 156 (213)
T 1hh8_A 153 EPRH 156 (213)
T ss_dssp SGGG
T ss_pred cccc
Confidence 8754
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-16 Score=127.77 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCCceeeeeeCCCCccccchhHhHH--HHHhhC-CCeEEEEEeC---cCcHHHHHHcCC---CcccEEEEE-ECCeEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVN--LLCVRY-PYVHFFKVDV---EESLAIAKSEGV---RTVPTFKIY-KNGEKLK 493 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~--~l~~~~-~~~~~~~~d~---~~~~~~~~~~~v---~~~Pt~~~~-~~g~~~~ 493 (543)
..+++++|+||++||++|+.+.|.|+ ++...+ +++.|+.||+ +.+.+++++|+| .++||+++| ++|+++.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 45889999999999999999999999 999888 4599999999 999999999999 999999999 7999999
Q ss_pred EEcC-------C-CHHHHHHHHHhc
Q 009096 494 EMIN-------P-SHQFLEDSANLA 510 (543)
Q Consensus 494 ~~~g-------~-~~~~~~~~~~~~ 510 (543)
+..| . +.+++.++|+++
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHh
Confidence 9999 5 899999999875
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-17 Score=133.28 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCcccEEEEE--EC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRTVPTFKIY--KN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~--~~ 488 (543)
+.+......+++++|.||++||++|+.+.|.+ +++.+.+++ +.|+.+|++ +...++++|+|.++||+++| ++
T Consensus 10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~ 89 (130)
T 2lst_A 10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKA 89 (130)
Confidence 33444555678999999999999999999999 899888876 999999994 66889999999999999999 68
Q ss_pred CeE--EEEEcCC-CHHHHHHHHHhcCCCCCCCCcccc
Q 009096 489 GEK--LKEMINP-SHQFLEDSANLAPSPVYKLPLVTL 522 (543)
Q Consensus 489 g~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 522 (543)
|++ +.++.|. +.+++.++|++++......+.+++
T Consensus 90 G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~ 126 (130)
T 2lst_A 90 GAWEEVGRLFGSRPRAEFLKELRQVCVKGGACGEGHH 126 (130)
Confidence 999 8999998 999999999998876655554433
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.5e-16 Score=123.63 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=86.9
Q ss_pred eEEeehhhhhhhccCC--CCceeeeeeCC-------CCccccchhHhHHHHHhhCC-CeEEEEEeC-------cCcHHHH
Q 009096 410 VEEISSLEKFKAAISS--PGVSLVHFKEA-------SSEKCEEISPFVNLLCVRYP-YVHFFKVDV-------EESLAIA 472 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~--~~~~lv~f~~~-------~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~-------~~~~~~~ 472 (543)
...+.+.+.+...+.. ++++++.||++ ||++|+.+.|.+++++++++ ++.|+.+|+ +.+..++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3455677788777754 78999999999 99999999999999999996 599999999 7888999
Q ss_pred HHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHHh
Q 009096 473 KSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 473 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
++|+|.++||+++|++|..+....|.++++|+++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 9999999999999998776665666688999999875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.9e-15 Score=119.51 Aligned_cols=115 Identities=25% Similarity=0.446 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|..+...|++++|+..|++++..+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 92 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHhh
Q 009096 362 WSEAVRDYEALRRELPG-----DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~l~~~ 396 (543)
+++|+..|+++++++|+ +..+...+..+.......
T Consensus 93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 93 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 888888888776665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=121.27 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 230 VKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 230 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
.....+..+|.++...|++++|+..|++++..+|++..++ ..+|.++...|++++|+..|+++++.+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------------GNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3445677779999999999999999999999999987765 3479999999999999999999999999
Q ss_pred CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHhc
Q 009096 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV--SNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 375 (543)
.++.+++.+|.++..+|++++|+..|++++.++|++..++..++. .+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999999988855444 488889999999998876554
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-16 Score=123.59 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=83.9
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCC------CeEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP------YVHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~------~~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
+..++ .+.|...+ ..+++++|.||++||++|+.+.|.+++++++++ ++.|+.+|+++++ +++ +|.++||
T Consensus 9 v~~l~-~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt 84 (121)
T 2djj_A 9 VTVVV-AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPT 84 (121)
T ss_dssp SEECC-TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSE
T ss_pred eEEec-ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCe
Confidence 44444 45666664 678899999999999999999999999999886 4999999999876 555 9999999
Q ss_pred EEEEECCeE--EEEEcCC-CHHHHHHHHHhcCC
Q 009096 483 FKIYKNGEK--LKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 483 ~~~~~~g~~--~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+++|++|.. +.++.|. +.++|.++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 117 (121)
T 2djj_A 85 IKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117 (121)
T ss_dssp EEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred EEEEeCcCCCCceEecCCCCHHHHHHHHHhccC
Confidence 999998754 7788898 99999999998865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=137.10 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=137.6
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKM 277 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 277 (543)
.+..+...|++++|+..+++++...+..+........+..+|.++...+++++|+..|++++...+....... .
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~------~ 154 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ------N 154 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH------H
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH------H
Confidence 4677888899999999999988877766554333333444688999999999999999999986554333211 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKY-------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY----- 345 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 345 (543)
+..+..+|.++...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.++++++++.+..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 122456899999999999999999999953 22335689999999999999999999999999886443
Q ss_pred -HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc
Q 009096 346 -TKALLRRAVSNEKLG-RWSEAVRDYEALRRE 375 (543)
Q Consensus 346 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 375 (543)
..+++++|.++..+| ++++|+.+|++|+.+
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 789999999999999 579999999999876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=126.07 Aligned_cols=186 Identities=15% Similarity=0.031 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhC----CHHHHHHHhc
Q 009096 65 VEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLG----QVENARHHLC 140 (543)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (543)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+..|+++++. .++.+++.+|.+|.. + ++++|+.+|
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~- 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLA- 76 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHH-
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH-
Confidence 3577888888876 67889999999999999999999999998874 578888888888776 4 555555544
Q ss_pred CCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 141 FPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
+++.+. .+ +.+++.+
T Consensus 77 ----------------------------------------~~A~~~--g~-~~a~~~L---------------------- 91 (212)
T 3rjv_A 77 ----------------------------------------EKAVEA--GS-KSGEIVL---------------------- 91 (212)
T ss_dssp ----------------------------------------HHHHHT--TC-HHHHHHH----------------------
T ss_pred ----------------------------------------HHHHHC--CC-HHHHHHH----------------------
Confidence 444332 11 3333443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHhhcCCC--cHHHHHHHHhHHHHHHHHHHHHHHHh----
Q 009096 221 FEHYSPPSQVKFLVWLLKLMFNIS----ELRFENAVSSAEKAGLLDYS--NVEIASVLTNVKMVVRARTRGNNLFS---- 290 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~g~~~~~---- 290 (543)
|.++.. .+++++|+.+|+++.+..|. ++.++ ..+|.+|..
T Consensus 92 ------------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~------------~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 92 ------------------ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ------------MLLGLIYASGVHG 141 (212)
T ss_dssp ------------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH------------HHHHHHHHHTSSS
T ss_pred ------------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH------------HHHHHHHHcCCCC
Confidence 444444 56777777778887777763 24442 457889988
Q ss_pred cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc-c-----CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 291 SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM-G-----LWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 291 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++++.. +..+...++.
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~ 208 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDR 208 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 88999999999999988 67788999999999864 3 8999999999999874 4555555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-15 Score=136.71 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=138.1
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHh
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTN 274 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 274 (543)
+...+..+...|++++|+..+.++++..+............+..|.++...|++++|+..+++++...+.....+.
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---- 153 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ---- 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH----
Confidence 3445677777888888888887777766665444344444556688999999999999999999977654422110
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHh---ccCCCCh----hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---
Q 009096 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGL---KYDSYNS----ILYCNRAICWSKMGLWENSIEDCNVALRIQPN--- 344 (543)
Q Consensus 275 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 344 (543)
.+..+..+|.++...|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.++++++.+.++
T Consensus 154 --~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 --NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 11224568999999999999999999999 4455532 68999999999999999999999999987543
Q ss_pred ---CHHHHHHHHHHHHHccCHHHH-HHHHHHHHhcC
Q 009096 345 ---YTKALLRRAVSNEKLGRWSEA-VRDYEALRREL 376 (543)
Q Consensus 345 ---~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 376 (543)
...+++++|.++..+|++++| ..+|++|+.+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 268899999999999999999 88899998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-13 Score=139.57 Aligned_cols=348 Identities=7% Similarity=-0.073 Sum_probs=244.7
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCC---HHHHHHHHHHHHhcCC--cchhhHHhHHHHHHHcCCH----HH---
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGN---FVEALKLYDKAISMSP--ENAAYRSNRAATLTALGRL----TE--- 100 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~----~~--- 100 (543)
+...++.++...|.....|...+......|+ ++.+..+|++++...| .++..|..........++. ++
T Consensus 85 aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~ 164 (679)
T 4e6h_A 85 VYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHH
Confidence 4455677888999999999999999999999 9999999999999883 5777887776665555543 33
Q ss_pred -HHHHHHHHHhc----CCCChhHHHHHHHHHH---------HhCCHHHHHHHhcCCCCCCCh---HHHhHHHHHH-----
Q 009096 101 -AVSDCEEAVRL----DPGYNRAHQRLASLYF---------RLGQVENARHHLCFPGHHPDP---NELLKLQSFE----- 158 (543)
Q Consensus 101 -A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~----- 158 (543)
....|++|+.. +|.....|........ ..++.+.+...|.+++..|.. ..+......+
T Consensus 165 ~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc
Confidence 44778887763 6666777776665543 344577888889888873321 1111000000
Q ss_pred -----------HHHHHHHh-h---------------------------------------------hhcC---------C
Q 009096 159 -----------KHLNRCAE-S---------------------------------------------RKIG---------D 172 (543)
Q Consensus 159 -----------~~~~~~~~-~---------------------------------------------~~~~---------~ 172 (543)
..+..+.. + .... .
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 00000000 0 0000 1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHH-HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHH
Q 009096 173 WKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDAD-SCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENA 251 (543)
Q Consensus 173 ~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 251 (543)
.+.....|++++...|.. +.+|...+..+...|+.++|. ..|++++...|.+.. .|+..+......|++++|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~-~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~------Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFA-PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV------LAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHH
Confidence 223456799999998876 899999999999999999997 999999999998743 344448889999999999
Q ss_pred HHHHHHHhhcC-----------CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CCCChhHHhHHH
Q 009096 252 VSSAEKAGLLD-----------YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-DSYNSILYCNRA 319 (543)
Q Consensus 252 ~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la 319 (543)
...|++++... |.+......+. ......+...+....+.|..+.|...|.+|++. .+....+|...|
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~-~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLK-SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 99999999752 43210000000 000011233456667788999999999999987 444567787778
Q ss_pred HHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---ChHHHHHHHH
Q 009096 320 ICWSKMGL-WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG---DNEVAESLHN 388 (543)
Q Consensus 320 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~ 388 (543)
.+..+.++ ++.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ...++..+..
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777654 899999999999999999999999999999999999999999999999884 3344444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=116.66 Aligned_cols=100 Identities=33% Similarity=0.476 Sum_probs=94.9
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.+++.++.+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCC
Q 009096 125 LYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~ 144 (543)
++..+|++++|+..|+++++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 99999999999998866654
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=135.96 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=85.3
Q ss_pred hhhhhccCCCCce-eeeeeCCCCccccchhHhHHHHHhhCC-----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 417 EKFKAAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYP-----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 417 ~~~~~~i~~~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+......++++ ++.||++||++|+.+.|.+++++.+++ ++.|+.+|+++++.++++|+|.++||+++|++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 203 (226)
T 1a8l_A 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE 203 (226)
T ss_dssp HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTE
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCc
Confidence 4455555556677 999999999999999999999999986 6999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcC
Q 009096 491 KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
.+.++.|. +.++|.++|++.+
T Consensus 204 ~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 204 DRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred eeEEEcCCCCHHHHHHHHHHhh
Confidence 99999998 9999999998753
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-17 Score=126.71 Aligned_cols=90 Identities=26% Similarity=0.472 Sum_probs=83.0
Q ss_pred hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 421 AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 421 ~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
.....++++++.||++||++|+.+.|.++++.++++ ++.|+.+|+++++.++++|+|.++||++++++|+.+.++.|.
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 93 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQ 93 (106)
Confidence 444668899999999999999999999999999997 599999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHhc
Q 009096 499 SHQFLEDSANLA 510 (543)
Q Consensus 499 ~~~~~~~~~~~~ 510 (543)
+.+++.++|++.
T Consensus 94 ~~~~l~~~l~~~ 105 (106)
T 2yj7_A 94 PKEALKERIDKH 105 (106)
Confidence 899999998865
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=137.35 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|++.+ ..+++++|.||++||++|+.+.|.++++++++++ +.|+.+|++ ++..++++|+|.++||+++
T Consensus 19 vv~l-t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~ 97 (298)
T 3ed3_A 19 ISEL-TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97 (298)
T ss_dssp CEEC-CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEE
T ss_pred eEEe-CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEE
Confidence 4444 446677766 5578999999999999999999999999999987 899999988 7899999999999999999
Q ss_pred EECCe-----------------EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGE-----------------KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~-----------------~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+ ...++.|. +.+.|.++|.+.+.++
T Consensus 98 ~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~ 144 (298)
T 3ed3_A 98 FRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSY 144 (298)
T ss_dssp EECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCC
T ss_pred EECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccc
Confidence 99997 36678888 9999999999887554
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=136.77 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=90.8
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..+ +.+.|+..+..+++++|+||++||++|+.+.|.++++++++++ +.|+.+|+++++.++++|+|.++||+++
T Consensus 17 v~~l-~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 95 (241)
T 3idv_A 17 VLVL-NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKI 95 (241)
T ss_dssp EEEE-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred cEEe-cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEE
Confidence 4444 4567778888889999999999999999999999999987743 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+.+ ++.|. +.+++.++|++...+.
T Consensus 96 ~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~ 124 (241)
T 3idv_A 96 LKKGQAV-DYEGSRTQEEIVAKVREVSQPD 124 (241)
T ss_dssp EETTEEE-ECCSCSCHHHHHHHHHHHHSTT
T ss_pred EcCCCcc-cccCcccHHHHHHHHhhccCcc
Confidence 9999988 57777 9999999999876654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=151.68 Aligned_cols=144 Identities=21% Similarity=0.326 Sum_probs=126.8
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------------
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN------------ 311 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------ 311 (543)
.++++++|+..|++++...|+....+ ..+|..++..|+|++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~------------~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIV------------KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH
Confidence 56778888888887777766665553 558999999999999999999999999998
Q ss_pred ---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 312 ---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 312 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
..+|+++|.||.++|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 009096 389 AQVALKKSRGE 399 (543)
Q Consensus 389 ~~~~l~~~~~~ 399 (543)
+...+++....
T Consensus 394 ~~~~~~~~~~a 404 (457)
T 1kt0_A 394 CQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=111.88 Aligned_cols=111 Identities=29% Similarity=0.496 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
.+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 360 GRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 360 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
|++++|...|+++++++|+++.++..+..+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=144.75 Aligned_cols=163 Identities=14% Similarity=0.057 Sum_probs=100.3
Q ss_pred hhhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC----------hhHHHHHhhcCCCCCCCCChhHHHHHHH
Q 009096 167 SRKIGDW-KTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQ----------NEDADSCLSNMPKFEHYSPPSQVKFLVW 235 (543)
Q Consensus 167 ~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
....|.+ ++|+..+++++..+|++ ..+|+.++.++..+++ +++++..++++++.+|.+.
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--------- 107 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--------- 107 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------
Confidence 3334433 45567777777777666 6667777776666666 6666666666666666662
Q ss_pred HHHHHHHHhhcC---------hHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 009096 236 LLKLMFNISELR---------FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR-RYSEACSAYGEGL 305 (543)
Q Consensus 236 ~~~a~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al 305 (543)
.++...+- ++++++.++++++.+|.+..+|.. ++.++...| .++++++++.+++
T Consensus 108 ----~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~------------R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 108 ----GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDY------------RRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp ----HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHTCCCHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHH------------HHHHHHHcCCChHHHHHHHHHHH
Confidence 12222222 155666666666666666666532 466666666 6666666666666
Q ss_pred ccCCCChhHHhHHHHHHHHc--------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 306 KYDSYNSILYCNRAICWSKM--------------GLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 306 ~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
+.+|.+..+|++++.++..+ +.+++|++++.+++.++|++..+|+.++.+
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 66666666666666666654 445666666666666666666666655544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=139.78 Aligned_cols=194 Identities=10% Similarity=-0.028 Sum_probs=133.5
Q ss_pred HHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHH
Q 009096 158 EKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLL 237 (543)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
..+..+|..+...|++++|+..|++++..+|.+ ..++..+|.++..+|++++|+..++++++.+|++.. +++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~ 77 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------AHFF 77 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------HHHH
Confidence 346677888888888888888888888888876 677788888888888888888888888888887744 3444
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|.++...|++++|+..|+++++++|++...... ...... +..++...........|.+..+...
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD------------DIPSAL---RIAKKKRWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS------------HHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH------------HHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4888888888888888888888877765321100 000000 1112222222333456666777666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhc
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL-GRWSEAVRDYEALRRE 375 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 375 (543)
++.++ .|++++|++.++++++.+|++......++.++... +.+++|.+.|.++.+.
T Consensus 143 l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 143 LTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 76654 57888888888888888888777777777666665 6677777777776553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=116.43 Aligned_cols=113 Identities=24% Similarity=0.484 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
++++|+.+|+++++++|++..++..+..+....
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999999998888776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=119.87 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=94.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 289 FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW----------ENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 289 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
.+.+.|++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++.++|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cc-----------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 359 LG-----------RWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 359 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+| ++++|+++|++|++++|++...+..+..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 85 8999999999999999999988777665433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-14 Score=112.51 Aligned_cols=115 Identities=28% Similarity=0.531 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 361 RWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 361 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++|+.+|+++++++|+++.++..++.+...+++
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999888888776643
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=146.02 Aligned_cols=100 Identities=22% Similarity=0.288 Sum_probs=89.1
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC------CC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY------PY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~------~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.|..++..+++++|.||++||++|+.+.|.+++++..+ .+ +.|++||++.+..++++|+|.++||+++|+
T Consensus 11 ~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~ 90 (382)
T 2r2j_A 11 DTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFR 90 (382)
T ss_dssp CTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEE
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEe
Confidence 34667777777899999999999999999999999999876 22 999999999999999999999999999999
Q ss_pred CCeEEEE-EcCC-CHHHHHHHHHhcCCCC
Q 009096 488 NGEKLKE-MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 488 ~g~~~~~-~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|+.+.+ +.|. +.+.|.++|++.+.++
T Consensus 91 ~G~~~~~~~~G~~~~~~l~~~i~~~~~~~ 119 (382)
T 2r2j_A 91 NGMMMKREYRGQRSVKALADYIRQQKSDP 119 (382)
T ss_dssp TTEEEEEECCSCCSHHHHHHHHHHHHSCC
T ss_pred CCcEeeeeecCcchHHHHHHHHHHhccCC
Confidence 9999885 8898 9999999999887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=113.76 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh---hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS---ILYCNRAICWSKMGLWENSIEDCNVALRIQPNY---TKALLRRAV 354 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 354 (543)
++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 35589999999999999999999999999988 799999999999999999999999999999999 899999999
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 355 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
++..+|++++|+..|+++++..|+++.+......+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999988766655443
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=123.20 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=80.2
Q ss_pred CCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCc--CcHHHHHHcCCCcccEEEEE-ECCeEEEEEcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVE--ESLAIAKSEGVRTVPTFKIY-KNGEKLKEMIN 497 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g 497 (543)
.+++++|.||++||++|+.+.|.+ +.+.+.+. ++.++.+|++ ....++++|+|.++||++++ ++|+++.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 578999999999999999999998 66666553 4889999998 57899999999999999999 69999999999
Q ss_pred C-CHHHHHHHHHhcCCCC
Q 009096 498 P-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 498 ~-~~~~~~~~~~~~~~~~ 514 (543)
. +.++|.++|++.+.+.
T Consensus 106 ~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 106 AEDAPELLKKVKLGVESE 123 (130)
T ss_dssp CCCHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 8 9999999999987664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-14 Score=114.57 Aligned_cols=95 Identities=26% Similarity=0.408 Sum_probs=85.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
++++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hCCHHHHHHHhcCCC
Q 009096 129 LGQVENARHHLCFPG 143 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~ 143 (543)
.|++++|+..+++++
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 888888887775544
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=134.30 Aligned_cols=101 Identities=21% Similarity=0.328 Sum_probs=90.0
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+...+..++++++.||++||++|+.+.|.+.+++.++ +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 213 (241)
T 3idv_A 134 VLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRK 213 (241)
T ss_dssp ECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred eccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEEC
Confidence 3455677777777889999999999999999999999998876 349999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|+++. +.|. +.++|.++|++...++
T Consensus 214 g~~~~-~~g~~~~~~l~~~l~~~~~~~ 239 (241)
T 3idv_A 214 GRPYD-YNGPREKYGIVDYMIEQSGAA 239 (241)
T ss_dssp TEEEE-CCSCCSHHHHHHHHHHHTTCT
T ss_pred CeEEE-ecCCCCHHHHHHHHHhhhCCC
Confidence 99887 6787 9999999999987654
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=127.09 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcC---CCcccEEEEEEC-CeEEEEEcCCCH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEG---VRTVPTFKIYKN-GEKLKEMINPSH 500 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~---v~~~Pt~~~~~~-g~~~~~~~g~~~ 500 (543)
.++++++.||++|||+|+.+.|.|++++++++++.|..+|+|++++++.+|+ |.++||++++++ |+++.++. ..+
T Consensus 53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g-~~p 131 (167)
T 1z6n_A 53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFV-ERP 131 (167)
T ss_dssp CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEE-SSC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEc-CCC
Confidence 3578999999999999999999999999999999999999999999999997 999999999986 58888774 444
Q ss_pred HHHHHHHHhc
Q 009096 501 QFLEDSANLA 510 (543)
Q Consensus 501 ~~~~~~~~~~ 510 (543)
..+.+.++++
T Consensus 132 ~~~~~~i~~~ 141 (167)
T 1z6n_A 132 QAVLDGGPQA 141 (167)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHhHHHH
Confidence 5555666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-14 Score=123.72 Aligned_cols=148 Identities=12% Similarity=0.022 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 009096 194 LVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLT 273 (543)
Q Consensus 194 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 273 (543)
.++.+|..+...|++++|+..|++++ .| + ...+..+|.++...|++++|+..|++++..+|++..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 74 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-H------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY---- 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHH----
Confidence 45678999999999999999999996 22 2 23566679999999999999999999999999998775
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh----------------hHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS----------------ILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
..+|.++...|++++|+..|+++++..|.+. .+++++|.++..+|++++|+..|++
T Consensus 75 --------~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 75 --------FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3479999999999999999999999888776 9999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
+++++|++. .+..++|+..+++...
T Consensus 147 al~~~p~~~------------~~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 147 ATSMKSEPR------------HSKIDKAMECVWKQKL 171 (213)
T ss_dssp HHTTCCSGG------------GGHHHHHHHHHHTTCC
T ss_pred HHHcCcccc------------cchHHHHHHHHHhccc
Confidence 999999863 3455666666554433
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=121.45 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=84.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCc--ccEEEEEEC--C
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRT--VPTFKIYKN--G 489 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~--~Pt~~~~~~--g 489 (543)
+...|.+.+..+.+++++||++ |++|+++.|.|++++++|.+ +.|+++|+++++.+++.|||++ +||+++|++ |
T Consensus 12 t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g 90 (133)
T 2djk_A 12 GPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKN 90 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTC
T ss_pred ChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcC
Confidence 3455666677788999999999 89999999999999999976 9999999999999999999999 999999997 7
Q ss_pred eEEEEEc--CC-CHHHHHHHHHhcC
Q 009096 490 EKLKEMI--NP-SHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~~~~~--g~-~~~~~~~~~~~~~ 511 (543)
+. .+.. |. +++.|+++|++++
T Consensus 91 ~~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 91 QK-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp CB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred cc-cCCCCccccCHHHHHHHHHHHH
Confidence 77 4665 87 9999999999764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-14 Score=129.81 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHH
Q 009096 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP-----QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVK 231 (543)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 231 (543)
...+...+..+...|++++|+..+.++++..+.... .++..+|.++...|++++|+..+++++...+........
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445667788889999999999999999998765421 335568889999999999999999999877766555555
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHh---hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAG---LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..++..+|.++...|++++|+.+|++++ +..|++.... ...+.++|.++...|+|++|+.+|++++++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6678888999999999999999999999 5566654432 0123568999999999999999999999875
Q ss_pred CC------ChhHHhHHHHHHHHccCHHHH-HHHHHHHHhh
Q 009096 309 SY------NSILYCNRAICWSKMGLWENS-IEDCNVALRI 341 (543)
Q Consensus 309 p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 341 (543)
++ .+.+++++|.+|..+|++++| ..+|++++.+
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 32 267899999999999999999 8889999875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=130.05 Aligned_cols=171 Identities=11% Similarity=-0.020 Sum_probs=120.9
Q ss_pred HHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH----HHH
Q 009096 198 KAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS----VLT 273 (543)
Q Consensus 198 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~l~ 273 (543)
.+......|++++|.+.+...... .......+..+|..+...|++++|+..|++++.+.|.++.... ...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83 (198)
T ss_dssp ------------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 455566667777776666544322 2223445667799999999999999999999999888761000 000
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 009096 274 NVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRA 353 (543)
Q Consensus 274 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 353 (543)
.......+.++|.++...|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 00012234568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHH-HHHHHHHh
Q 009096 354 VSNEKLGRWSEAV-RDYEALRR 374 (543)
Q Consensus 354 ~~~~~~g~~~~A~-~~~~~al~ 374 (543)
.++..+++..++. ..|.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988887 44444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4e-14 Score=119.66 Aligned_cols=115 Identities=11% Similarity=0.029 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...++.+|.++...|++++|+..|++++.++|++..++ ..+|.++...|++++|+..|+++++++|++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYL------------SNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHH------------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 44667779999999999999999999999999998875 447999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
+.+|+++|.++..+|++++|+.+|+++++++|++..+++.++.....
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777765443
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-15 Score=108.45 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=66.4
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
++.||++||++|+.+.|.|+++..++ +.++|++++++++.+||++ +||+++ +||+++. |. ++++|+++|+
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l~ 73 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWLD 73 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHHH
Confidence 78899999999999999999987665 6899999999999999998 999999 9999885 66 9999999999
Q ss_pred hcCC
Q 009096 509 LAPS 512 (543)
Q Consensus 509 ~~~~ 512 (543)
+.+.
T Consensus 74 ~~~~ 77 (87)
T 1ttz_A 74 AAPH 77 (87)
T ss_dssp TCC-
T ss_pred HHHH
Confidence 8654
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=139.13 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=90.0
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHh-------HHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcc
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPF-------VNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTV 480 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~-------l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~ 480 (543)
+..+ +.+.|++.+..+++++|.||++||+ |+.+.|. ++++++.+. ++.|++||+++++.++++|||.++
T Consensus 13 v~~l-~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~ 90 (350)
T 1sji_A 13 VVSL-TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEE 90 (350)
T ss_dssp CEEE-CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCST
T ss_pred cEEC-CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCcc
Confidence 3444 4567788888889999999999999 9999888 899998875 599999999999999999999999
Q ss_pred cEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 481 PTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 481 Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
||+++|++|+ +.++.|. +.+.|.++|++.+.++
T Consensus 91 Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~~~ 124 (350)
T 1sji_A 91 GSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIEDP 124 (350)
T ss_dssp TEEEEEETTE-EEEECSCCCHHHHHHHHHTTSSCS
T ss_pred ceEEEEECCc-EEEecCCCCHHHHHHHHHHhcCCc
Confidence 9999999999 5578898 9999999999988654
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-15 Score=132.65 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=85.9
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeC--cCcHHHHHHcCCCcccE
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDV--EESLAIAKSEGVRTVPT 482 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~--~~~~~~~~~~~v~~~Pt 482 (543)
.+..++..+....+...+++++|+||++||++|+.+.|.+++++++++ ++.|+.+|+ ++++.++++|+|.++||
T Consensus 13 ~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt 92 (244)
T 3q6o_A 13 PLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92 (244)
T ss_dssp SSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred CceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence 345555544444445667999999999999999999999999999996 499999999 67899999999999999
Q ss_pred EEEEECCeEEE-----EEcCCCHHHHHHHHHhcCCC
Q 009096 483 FKIYKNGEKLK-----EMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 483 ~~~~~~g~~~~-----~~~g~~~~~~~~~~~~~~~~ 513 (543)
+++|++|+... ++.|.+.+.|.++|.+++..
T Consensus 93 ~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~ 128 (244)
T 3q6o_A 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALES 128 (244)
T ss_dssp EEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHh
Confidence 99999743321 66677999999999987643
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-15 Score=147.13 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=92.6
Q ss_pred hhhhhhhccCCC---CceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSP---GVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~---~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|.+.+... ++++|.||++||++|+.+.|.+++++..+++ +.|+.||+++++.++++|||.++||+++|++|+
T Consensus 7 ~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 7 TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp CTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred cHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 456677777666 8999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+.++.|. +.+.|.++|.+.+.++
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~~~~ 111 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQAGPA 111 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHTSCS
T ss_pred eeeeecCccCHHHHHHHHHhhcccC
Confidence 99999998 9999999999988664
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=112.13 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=70.2
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHH
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLED 505 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~ 505 (543)
...++.|+++||++|+.+.|.|++++++++ +.|..+|++++++++.+||++ +||+++|+||+++. .|. ++++|++
T Consensus 29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~ 104 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGA 104 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHH
T ss_pred ccEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHH
Confidence 367999999999999999999999998875 999999999999999999997 99999999999873 465 9999998
Q ss_pred HH
Q 009096 506 SA 507 (543)
Q Consensus 506 ~~ 507 (543)
+|
T Consensus 105 ~L 106 (107)
T 2fgx_A 105 YL 106 (107)
T ss_dssp HH
T ss_pred Hh
Confidence 87
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=111.05 Aligned_cols=126 Identities=33% Similarity=0.495 Sum_probs=110.2
Q ss_pred ccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQ 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (543)
...+|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAE 200 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~ 200 (543)
.+|.++...|++++|+..| +++++..|.. ..++..++.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~-----------------------------------------~~~~~~~p~~-~~~~~~l~~ 122 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYY-----------------------------------------KKALELDPDN-ETYKSNLKI 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-HHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-----------------------------------------HHHHhcCccc-hHHHHHHHH
Confidence 9999999888888877766 4555566655 667777788
Q ss_pred HHHHccCh
Q 009096 201 AHLKLHQN 208 (543)
Q Consensus 201 ~~~~~~~~ 208 (543)
++...|++
T Consensus 123 ~~~~~~~~ 130 (131)
T 2vyi_A 123 AELKLREA 130 (131)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 88877765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=115.18 Aligned_cols=117 Identities=25% Similarity=0.491 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
....+..+|..+...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++..+|+++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34446778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 009096 357 EKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 357 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766664444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=113.93 Aligned_cols=108 Identities=32% Similarity=0.450 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+|..+...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+..|++++..+|+++.+++.+|.++..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence 457999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNEVAESLHNA 389 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 389 (543)
+|++++|+.+|+++++++|+++.++..+..+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999999999999999999998776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=117.15 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=93.2
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCc-------chh-----hHHhHHHHHHHcCCHHHHHHHHHHHHhc---
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPE-------NAA-----YRSNRAATLTALGRLTEAVSDCEEAVRL--- 111 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (543)
.+..++.+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 5678899999999999999999999999999998 433 9999999999999999999999999999
Q ss_pred ----CCCChhHH----HHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 112 ----DPGYNRAH----QRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|++..+| +++|.++..+|++++|+..|+++++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999876
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.5e-15 Score=147.04 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=94.2
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+ +.+.|.+.+..+++++|.||++||++|+.+.|.+++++..+++ +.|++||++.++.++++|||.++||+++|+
T Consensus 16 v~~l-~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 94 (504)
T 2b5e_A 16 VVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 94 (504)
T ss_dssp CEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEe
Confidence 4444 4567778888889999999999999999999999999999974 999999999999999999999999999999
Q ss_pred CCeE--EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 488 NGEK--LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 488 ~g~~--~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|+. +.++.|. +.+.|.++|.+.+.++
T Consensus 95 ~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~ 124 (504)
T 2b5e_A 95 NSDVNNSIDYEGPRTAEAIVQFMIKQSQPA 124 (504)
T ss_dssp TTCTTCEEECCSCCSHHHHHHHHHHHTSCS
T ss_pred CCccccceeecCCCCHHHHHHHHHHhcCCc
Confidence 9997 8889998 9999999999988654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=111.44 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY-------TKALLRR 352 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 352 (543)
.+..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 356689999999999999999999999999999999999999999999999999999999998877 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 353 AVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 353 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
|.++...|++++|+.+|++++++.| ++.+...+..+...+++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999 6888888888877776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=112.28 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...+..+|.++...|++++|+..|++++..+|++..++ ..+|.++...|++++|+.+|+++++.+|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY------------SNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHH------------HHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 44667779999999999999999999999999987765 347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+++.+|.++...|++++|+..|++++..+|++..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988774
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-15 Score=140.43 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=86.4
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchh------HhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEIS------PFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~------p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+...|.+.+..+++++|.||++||++|.... |.+++++..+. ++.|++||+++++.+|++|||+++||+++
T Consensus 18 lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~ 97 (367)
T 3us3_A 18 VNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYV 97 (367)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEE
Confidence 34567778887889999999999999974443 68889888774 49999999999999999999999999999
Q ss_pred EECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 486 YKNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 486 ~~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|++|+++ ++.|. +.+.|.++|++.+.++
T Consensus 98 f~~G~~~-~y~G~~~~~~i~~~i~~~~~~~ 126 (367)
T 3us3_A 98 FKEDEVI-EYDGEFSADTLVEFLLDVLEDP 126 (367)
T ss_dssp EETTEEE-ECCSCCSHHHHHHHHHHHHSCS
T ss_pred EECCcEE-EeCCCCCHHHHHHHHHHhcCCC
Confidence 9999886 67787 9999999999886543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=107.59 Aligned_cols=111 Identities=26% Similarity=0.370 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
..+|.++...|++++|++.|+++++..|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 009096 362 WSEAVRDYEALRRELPGDNEVAESLHNAQVA 392 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 392 (543)
+++|+..|+++++.+|+++.+...++.+...
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999888776544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.7e-15 Score=146.11 Aligned_cols=159 Identities=17% Similarity=0.066 Sum_probs=123.9
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH---HHHHHHhHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE---IASVLTNVKMVVR 280 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~ 280 (543)
.++++++|+..++.++...|.. ...+..+|..++..|++++|+..|++++.++|.+.. .............
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 3455666666666555544433 345666699999999999999999999999888731 0000000112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
+.++|.++..+|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHH
Q 009096 361 RWSEAVRD 368 (543)
Q Consensus 361 ~~~~A~~~ 368 (543)
++++|...
T Consensus 400 ~~~~a~~~ 407 (457)
T 1kt0_A 400 EHNERDRR 407 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=133.16 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhc----------------cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLK----------------YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.+|.++|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34456789999999999999999999998 77888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhhh
Q 009096 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGEF 400 (543)
Q Consensus 342 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~ 400 (543)
+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..+..+...+++.+...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=125.48 Aligned_cols=173 Identities=11% Similarity=-0.027 Sum_probs=139.5
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHH
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSP-----QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 234 (543)
+...+..+...|++++|+..+++++...+.... .++..+|.++...+++++|+..+++++...+..........+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 445567788899999999999999997665422 133458888888999999999999999876665555455556
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcC----CCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLD----YSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 310 (543)
+..+|.+|...|++++|+.+|+++++.. .+..... ..+.++|.++...|+|++|+.++++++++.+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV---------KVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH---------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999532 2222222 22456899999999999999999999987543
Q ss_pred C------hhHHhHHHHHHHHcc-CHHHHHHHHHHHHhh
Q 009096 311 N------SILYCNRAICWSKMG-LWENSIEDCNVALRI 341 (543)
Q Consensus 311 ~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 341 (543)
. +.+++++|.+|..+| ++++|+.+|++++.+
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3 789999999999999 579999999999976
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=112.61 Aligned_cols=96 Identities=20% Similarity=0.078 Sum_probs=93.1
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
..++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHhcCCCC
Q 009096 129 LGQVENARHHLCFPGH 144 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~ 144 (543)
.|++++|+..|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998876
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=116.93 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=91.5
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhc------------------CCcchhhHHhHHHHHHHcCCHHHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISM------------------SPENAAYRSNRAATLTALGRLTEAVSDCEE 107 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (543)
..+..+..+|..++..|+|++|+..|++++.. +|.+..+++++|.||..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35788999999999999999999999999998 777789999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+++++|+++.+|+.+|.++..+|++++|+..|++++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888755543
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=125.69 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=84.5
Q ss_pred eEEeehhhhhhhccCCCCceeeeee--CCCCccccchhHhHHHHHhhC----CCeEEEEEeCcC-----cHHHHHHcCCC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFK--EASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEE-----SLAIAKSEGVR 478 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~--~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~-----~~~~~~~~~v~ 478 (543)
+..+ +...|.+++..+++++|+|| +|||+ +.|.|++++.++ +++.|++||+++ ++++|.+|+|.
T Consensus 18 v~~L-t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~ 92 (248)
T 2c0g_A 18 CVDL-DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD 92 (248)
T ss_dssp CEEC-CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred cEEC-CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCC
Confidence 3444 44667778888889999999 99999 999999999987 459999999998 89999999999
Q ss_pred --cccEEEEEECCeE--EEEE--cCC-CHHHHHHHHHhcCCC
Q 009096 479 --TVPTFKIYKNGEK--LKEM--INP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 479 --~~Pt~~~~~~g~~--~~~~--~g~-~~~~~~~~~~~~~~~ 513 (543)
++||+++|+ |+. ..++ .|. +.+.|.++|++..+.
T Consensus 93 ~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~ 133 (248)
T 2c0g_A 93 DKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPL 133 (248)
T ss_dssp TTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred cCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhcc
Confidence 999999999 983 5566 787 999999999998763
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-14 Score=111.50 Aligned_cols=75 Identities=15% Similarity=0.229 Sum_probs=63.6
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP- 498 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~- 498 (543)
+++++|.||++||++|+.+.|.|++++++++ .+|++ ++++++++|||.++||+++ ||+. +.|.
T Consensus 12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-----~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~ 81 (106)
T 3kp8_A 12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-----YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVR 81 (106)
T ss_dssp HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-----EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-----EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCC
Confidence 3567899999999999999999999998876 44554 6789999999999999777 9974 6788
Q ss_pred CHHHHHHHHHhc
Q 009096 499 SHQFLEDSANLA 510 (543)
Q Consensus 499 ~~~~~~~~~~~~ 510 (543)
+.++|.+++.-.
T Consensus 82 ~~~~l~~~~~~~ 93 (106)
T 3kp8_A 82 SLEALAVASGYP 93 (106)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHHHHHHHhCCc
Confidence 999999998643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-14 Score=113.17 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=88.2
Q ss_pred hcCCHHHHHHHHHHHhcc---CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKY---DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
..|++++|+..|+++++. +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHH
Q 009096 367 RDYEALRRELPGDNEVAESL 386 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~~~l 386 (543)
..|+++++..|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999876543
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=126.30 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=79.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC-----CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-C
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY-----PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-S 499 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-----~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~ 499 (543)
++.+++.||++||++|+.+.|.+++++..+ +++.+..+|++.+++++++|+|.++||+++ ||+++ +.|. +
T Consensus 138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~ 213 (243)
T 2hls_A 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPY 213 (243)
T ss_dssp SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCC
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCC
Confidence 456788999999999999999999999988 679999999999999999999999999988 99865 7788 9
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 009096 500 HQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~ 518 (543)
.++|.++|++.+......+
T Consensus 214 ~~~l~~~l~~~~~~~~~~~ 232 (243)
T 2hls_A 214 EEDFLDYVKSAAEGRLTVK 232 (243)
T ss_dssp HHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhhcccccC
Confidence 9999999999876654443
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=123.31 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=82.4
Q ss_pred hhhhhhhccCCCCceeeeeeC--CCCccccchhHhHHHHHhhC---CCeEEEEEeCc-----CcHHHHHHcCCC--cccE
Q 009096 415 SLEKFKAAISSPGVSLVHFKE--ASSEKCEEISPFVNLLCVRY---PYVHFFKVDVE-----ESLAIAKSEGVR--TVPT 482 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~-----~~~~~~~~~~v~--~~Pt 482 (543)
+...|...+..+++++|+||+ |||+ +.|.|++++..+ +++.|++||++ .+++++++|+|. ++||
T Consensus 11 t~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PT 86 (240)
T 2qc7_A 11 DTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPV 86 (240)
T ss_dssp CTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSE
T ss_pred CHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCE
Confidence 346677778778899999999 9999 999999999987 45999999955 489999999999 9999
Q ss_pred EEEEECCe--EEEEEcCC-CHHHHHHHHHhcC
Q 009096 483 FKIYKNGE--KLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~~~g~--~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++|++|+ .+.++.|. +.+.|.++|++..
T Consensus 87 l~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 87 FYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp EEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred EEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence 99999998 46788898 9999999999886
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-12 Score=119.66 Aligned_cols=265 Identities=13% Similarity=0.063 Sum_probs=190.2
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
.+++.++.+ ...|-.|+|..++.... +..|.+ ....+.+.++|+.+|++.... . .+....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHH
Confidence 456666654 44567899999998443 444443 356677889999999988521 1 1222234444444
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-DSSPQLVACKAEAHL 203 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~a~~~~ 203 (543)
.+. ++ |+..|++.+....+.. ..++..|.++...|++++|+..+.+.+..+| .....++...+.++.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~~~~~-------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDKQNSP-------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTSCCCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHhcCCCCc-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 7888888876321111 1245678888899999999999999999887 345788889999999
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISEL--RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRA 281 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 281 (543)
.+|+.+.|.+.++++.+.+|+..+........+..+.+....| ++.+|...|+++....|+......+
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lL---------- 217 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGL---------- 217 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHH----------
T ss_pred HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHH----------
Confidence 9999999999999998888731011111222223344455555 9999999999999888872222111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcc----------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKY----------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
++ ++..+|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 218 --ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 218 --LN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp --HH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred --HH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 23 799999999999999988876 48899999999999999998 99999999999999998654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=111.90 Aligned_cols=103 Identities=26% Similarity=0.352 Sum_probs=97.3
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (543)
..+|.++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHhcCCCC
Q 009096 122 LASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
+|.++..+|++++|+..|++++.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=125.92 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=82.1
Q ss_pred hhhhhhccCCCCce-eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 416 LEKFKAAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 416 ~~~~~~~i~~~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+.+...+..++++ ++.||++||++|+.+.|.+++++.+++++.|+.+|++++++++++|+|.++||+++ ||+ +.+
T Consensus 125 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~ 201 (229)
T 2ywm_A 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAE 201 (229)
T ss_dssp HHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEE
Confidence 34555555555666 78999999999999999999999999889999999999999999999999999998 898 677
Q ss_pred EcCC-CHHHHHHHHHhcC
Q 009096 495 MINP-SHQFLEDSANLAP 511 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~ 511 (543)
+.|. +.++|.++|++.+
T Consensus 202 ~~G~~~~~~l~~~l~~~~ 219 (229)
T 2ywm_A 202 FVGAQPENAFLGYIMAVY 219 (229)
T ss_dssp EESCCCHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHh
Confidence 8898 9999999998765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=120.21 Aligned_cols=128 Identities=12% Similarity=0.069 Sum_probs=99.0
Q ss_pred HccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHH
Q 009096 204 KLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART 283 (543)
Q Consensus 204 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 283 (543)
..|++++|+..+++++..+|.+.. .+..+|.++...|++++|+..|++++..+|++..++ ..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------~~ 83 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSE------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY------------AA 83 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHH------------HH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH------------HH
Confidence 445566666666666666665533 334448888888888888888888888888887764 34
Q ss_pred HHHH-HHhcCCH--HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 009096 284 RGNN-LFSSRRY--SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKAL 349 (543)
Q Consensus 284 ~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 349 (543)
+|.+ +...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 6888 7788998 9999999999999999999999999999999999999999999999999876544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=107.69 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN--YTKALLRRAVSNEKL 359 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 359 (543)
..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..|+++++.+|+ +..+++.+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -cCHHHHHHHHHHHHhcCCCCh
Q 009096 360 -GRWSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 360 -g~~~~A~~~~~~al~~~p~~~ 380 (543)
|++++|+++++++++..|.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCCCC
T ss_pred hCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999864
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-14 Score=100.95 Aligned_cols=71 Identities=11% Similarity=0.187 Sum_probs=63.9
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~ 506 (543)
.+.||++||++|+.+.|.++++.++++ ++.++.+| +.+++++|||.++||+++ ||+.+.+ |. +.+++.++
T Consensus 3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~~ 75 (77)
T 1ilo_A 3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKKI 75 (77)
T ss_dssp EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHHH
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHHH
Confidence 588999999999999999999999997 58899998 788999999999999998 9998887 65 78888877
Q ss_pred H
Q 009096 507 A 507 (543)
Q Consensus 507 ~ 507 (543)
|
T Consensus 76 l 76 (77)
T 1ilo_A 76 L 76 (77)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=113.12 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=79.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------cHHHHHHcCCCcccE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------SLAIAKSEGVRTVPT 482 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~~~~~~~~~v~~~Pt 482 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++. ...+++.|+|.++||
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 102 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence 4679999999999999999999999999999999999999977 678999999999999
Q ss_pred EEEE-ECCeEEEEEc---CC-CHHHHHHHHHhcC
Q 009096 483 FKIY-KNGEKLKEMI---NP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~-~~g~~~~~~~---g~-~~~~~~~~~~~~~ 511 (543)
++++ ++|+++ ++. |. +.+++.++|++++
T Consensus 103 ~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 103 FVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 9999 599999 999 98 9999999999865
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=122.65 Aligned_cols=88 Identities=9% Similarity=0.098 Sum_probs=73.8
Q ss_pred CCCCceeeeeeCCCCccccchhHhH---HHHHhhCC-CeEEEEEeCcCcHHH--------------------------HH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYP-YVHFFKVDVEESLAI--------------------------AK 473 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~-~~~~~~~d~~~~~~~--------------------------~~ 473 (543)
..+++++|+||++||++|+.+.+.+ .++.+.+. ++.|+.||+++...+ +.
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRV 124 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHH
Confidence 5688999999999999999984433 45554444 599999999877655 78
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEcCC-C-HHHHHHHHHhcC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMINP-S-HQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~-~~~~~~~~~~~~ 511 (543)
+|+|.++||++++ ++|+++.+..|. + .+++.++|++.+
T Consensus 125 ~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l 165 (172)
T 3f9u_A 125 KFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL 165 (172)
T ss_dssp HHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred HcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence 9999999999999 699999999998 6 999999998754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.9e-14 Score=139.82 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=118.7
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
+..++.++.+|..++..|++++|+..|+++++.+|++..++.++|.+|..+|++++|+..|+++++++|+++.+++++|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 009096 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEA--H 202 (543)
Q Consensus 125 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~--~ 202 (543)
+|..+|++++|+..| +++++.+|+. ..++..++.+ +
T Consensus 83 ~~~~~g~~~eA~~~~-----------------------------------------~~al~~~p~~-~~~~~~l~~~~~~ 120 (477)
T 1wao_1 83 SNMALGKFRAALRDY-----------------------------------------ETVVKVKPHD-KDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHTCHHHHHHHH-----------------------------------------HHHHHHSTTC-TTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHH
Confidence 999998888887766 4556666766 4566667777 8
Q ss_pred HHccChhHHHHHhh-----------cCCCCCCCCCh
Q 009096 203 LKLHQNEDADSCLS-----------NMPKFEHYSPP 227 (543)
Q Consensus 203 ~~~~~~~~A~~~~~-----------~~~~~~~~~~~ 227 (543)
...|++++|++.++ +++...|+...
T Consensus 121 ~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 121 VKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 88999999999999 88888877633
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=102.64 Aligned_cols=113 Identities=13% Similarity=0.017 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
..+..+|..+...|++++|+..|++++..+|++..++ ..+|.++...|++++|+..++++++.+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY------------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH------------HHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 3556669999999999999999999999999998765 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
.++..+|.++...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999888753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=103.56 Aligned_cols=116 Identities=25% Similarity=0.302 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
..+..+|.++...|++++|+..+++++...|++...+ ..+|.++...|++++|+..|+++++..|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW------------YNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH------------HHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 3456669999999999999999999999999987764 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLG 360 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 360 (543)
.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987765
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-15 Score=121.90 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=69.1
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHH--hhCCCeEEEEEeCc-CcHHHHHHcCCCcccEEEEEE-CCeEE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC--VRYPYVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYK-NGEKL 492 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~--~~~~~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~-~g~~~ 492 (543)
+.+..+...+++++|+||++||++|+.+.|.+.+.. .++.+..|+.||+| +..+++..++|.++||+++|+ +|+++
T Consensus 35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v 114 (151)
T 3ph9_A 35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVR 114 (151)
T ss_dssp HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBC
T ss_pred HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEE
Confidence 334445566899999999999999999999987642 22323346666664 345678899999999999998 99999
Q ss_pred EEEcCC--------CHHHHHHHHHh
Q 009096 493 KEMINP--------SHQFLEDSANL 509 (543)
Q Consensus 493 ~~~~g~--------~~~~~~~~~~~ 509 (543)
.+++|+ +++++.++|+.
T Consensus 115 ~~~~G~~~~~~~~~~~~~~~~ll~~ 139 (151)
T 3ph9_A 115 ADIAGRYSNRLYTYEPRDLPLLIEN 139 (151)
T ss_dssp TTCCCSCTTSTTCCCGGGHHHHHHH
T ss_pred EEEeCCcCCcccccchhhHHHHHHH
Confidence 999995 34555555543
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=117.37 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=76.4
Q ss_pred CCCCceeeeee-CCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCc-----------HHHHHHcCCCcccEEEEE-
Q 009096 424 SSPGVSLVHFK-EASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEES-----------LAIAKSEGVRTVPTFKIY- 486 (543)
Q Consensus 424 ~~~~~~lv~f~-~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~-----------~~~~~~~~v~~~Pt~~~~- 486 (543)
..+++++|+|| ++||++|+.+.|.+ .++.+.+ .++.++.+|+++. ..++++|+|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34789999999 99999999999999 7776665 4599999999765 489999999999999999
Q ss_pred ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 487 KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 487 ~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
++|+++.+. |. +.+++.++|++.+.
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 799999999 86 58899999987653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-12 Score=106.17 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=98.2
Q ss_pred CccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 009096 38 NVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114 (543)
Q Consensus 38 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 114 (543)
.......|.++..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|+
T Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 18 PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred CcCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 34556678899999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
++.+++.+|.++..+|++++|+.+|++++.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999888888755543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=135.27 Aligned_cols=217 Identities=9% Similarity=-0.007 Sum_probs=148.3
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh-----------------hHHhHHHHHHHcCCHHHHHHHHHHHHh
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAA-----------------YRSNRAATLTALGRLTEAVSDCEEAVR 110 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~ 110 (543)
|...+..|..+...|+|++|++.|.++++..|.... ++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456777888889999999999999999998876543 345555555555555555555555554
Q ss_pred cCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCC--
Q 009096 111 LDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGV-- 188 (543)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-- 188 (543)
..+....+.. ........+..+...|++++|+..+.+++...+
T Consensus 84 ~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 84 YMMQFAKSKT-----------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHTSCHHHH-----------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHccchHH-----------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 4333221110 011123344555566777777777777765432
Q ss_pred ---CCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCC--
Q 009096 189 ---DSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDY-- 263 (543)
Q Consensus 189 ---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-- 263 (543)
.....++..+|.++...|++++|+..+++++.......+.......+...+.++...|++++|...+++++...+
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 122557788999999999999999999988765443333334456677889999999999999999999986543
Q ss_pred -CcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 264 -SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 264 -~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
+...... ..+...|..+...++|.+|..+|.++++.
T Consensus 209 ~~~~~~~~--------~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 209 YCPTQTVA--------ELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CCCHHHHH--------HHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCchHHHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222211 11345789999999999999999999865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=132.74 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHH-----HHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASV-----LTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
.+..+|..++..|++++|+..|++++...|++...... .........+.++|.++...|+|++|+..|+++++++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555777777777777777777777777765420000 0000001124567888888888888888888888888
Q ss_pred CCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCChH
Q 009096 309 SYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN-EKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 888888888888888888888888888888888888888888888774 4556777788888888888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-14 Score=139.98 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=117.2
Q ss_pred HHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhH
Q 009096 238 KLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCN 317 (543)
Q Consensus 238 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 317 (543)
+|..+...|++++|+..|+++++.+|++..++ ..+|.++...|++++|++.|+++++++|+++.++++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYY------------GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 37788899999999999999999999998775 447999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhcCCCC
Q 009096 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS--NEKLGRWSEAVRDYE-----------ALRRELPGD 379 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~ 379 (543)
+|.+|..+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+.
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999999999999 889999999999999 888888764
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=136.74 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=86.3
Q ss_pred CeEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCc--CcHHHHHHcCCCccc
Q 009096 409 EVEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVE--ESLAIAKSEGVRTVP 481 (543)
Q Consensus 409 ~~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~--~~~~~~~~~~v~~~P 481 (543)
.+..++. +.|.. +...+++++|+||++||++|+.+.|.++++++++++ +.|+.||++ ++.+++++|+|.++|
T Consensus 13 ~V~~Lt~-~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~P 91 (519)
T 3t58_A 13 PLTLLDA-DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFP 91 (519)
T ss_dssp SSEEECT-TTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBS
T ss_pred CcEECCh-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccC
Confidence 3445544 45555 446678999999999999999999999999998864 999999995 589999999999999
Q ss_pred EEEEEE----CCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 482 TFKIYK----NGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 482 t~~~~~----~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|+++|+ +|+.+....|. +.++++++|++.+..
T Consensus 92 Tl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~ 128 (519)
T 3t58_A 92 TVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALES 128 (519)
T ss_dssp EEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTT
T ss_pred EEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhh
Confidence 999998 45556666666 999999999987654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=110.66 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCh
Q 009096 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRR----------YSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 243 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~ 312 (543)
.+.+.+++|+..++++++++|++.+++. ++|.++...++ +++|+..|+++++++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~------------n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLT------------RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHH------------HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 4567899999999999999999999864 35777777766 4699999999999999999
Q ss_pred hHHhHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCH
Q 009096 313 ILYCNRAICWSKMG-----------LWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 313 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 346 (543)
.+|+++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999974
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=131.73 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=100.6
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch-----------------hhHHhHHHHHHHc
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENA-----------------AYRSNRAATLTAL 95 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~ 95 (543)
+...+...+...+..+..++.+|..++..|+|++|+..|++++...|++. .+++++|.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 164 GKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp CBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555666788899999999999999999999999999999999876 4899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC
Q 009096 96 GRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 144 (543)
|++++|+.+|+++++++|++..+|+++|.+|..+|++++|+..|+++++
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888876
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=110.35 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=78.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++. ...+++.|||.++|
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 103 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence 4678999999999999999999999999999999999999854 56789999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|++++. +|+++ ++.|. +.+++.++|++++.
T Consensus 104 ~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 104 AYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp EEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred eEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence 999994 99999 99998 99999999998764
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=112.35 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=77.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 57899999999999999999999999999997 59999999864 5689999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHH
Q 009096 478 RTVPTFKIY-KNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
.++||++++ ++|+++.+..|. +.+++.++|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 699999999998 9999998874
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=113.18 Aligned_cols=89 Identities=21% Similarity=0.324 Sum_probs=80.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC---------------------------cCcHHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV---------------------------EESLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~---------------------------~~~~~~~~~~~ 476 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.+++ +....+++.||
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 568999999999999999999999999999977 99999985 44568999999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|.++||++++ ++|+++.+..|. +.+++.+.|++.+..
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 9999999999 699999999998 999999999987653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-13 Score=106.72 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=97.6
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG--YNRAHQR 121 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 121 (543)
+|.++..++.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-CCHHHHHHHhcCCCC
Q 009096 122 LASLYFRL-GQVENARHHLCFPGH 144 (543)
Q Consensus 122 la~~~~~~-g~~~~A~~~~~~a~~ 144 (543)
+|.++..+ |++++|+.++++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999 999999999988876
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=117.17 Aligned_cols=167 Identities=10% Similarity=-0.022 Sum_probs=118.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHhCC
Q 009096 58 MYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRL------DPGYNRAHQRLASLYFRLGQ 131 (543)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 131 (543)
++..|++++|...++......+....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999999666555433366889999999999999999999999999983 44456778888888888888
Q ss_pred HHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHccCh
Q 009096 132 VENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD---SSPQLVACKAEAHLKLHQN 208 (543)
Q Consensus 132 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~a~~~~~~~~~ 208 (543)
+++|+..+++++. .++ ..++ ....++..+|.++...|++
T Consensus 82 ~~~A~~~~~~al~----------------------------------~~~----~~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 82 WDAARRCFLEERE----------------------------------LLA----SLPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHHHHHH----------------------------------HHH----HSCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHH----------------------------------HHH----HcCccHHHHHHHHHHHHHHHHHhCCH
Confidence 8888888765543 000 0111 1134566677777777888
Q ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcC
Q 009096 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262 (543)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 262 (543)
++|+..+++++...+...........+..+|.++...|++++|+..+++++.+.
T Consensus 124 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888777777776554444444444556777999999999999999999988654
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=112.68 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=80.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------cHHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------SLAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------~~~~~~~~~v~~~ 480 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 46799999999999999999999999999886 49999999876 3478999999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYKL 517 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 517 (543)
||++++ ++|+++.++.|. +.+++.++|++++......
T Consensus 105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~~~ 143 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGETSG 143 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC----
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhhcc
Confidence 999888 699999999998 9999999999987655443
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=120.23 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=81.8
Q ss_pred hhhhhhcc---CCCCceeeeeeCC-CCccccchhHhHHHHHhhCCCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEECC
Q 009096 416 LEKFKAAI---SSPGVSLVHFKEA-SSEKCEEISPFVNLLCVRYPYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 416 ~~~~~~~i---~~~~~~lv~f~~~-~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+.+.+.+ ...+.+++.||++ ||++|+.+.|.++++++..+++.|+.+|+++ +++++++|||.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34444444 2345667999999 9999999999999999877779999999999 9999999999999999999999
Q ss_pred eEE-EEEcCC-CHHHHHHHHHhcC
Q 009096 490 EKL-KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~-~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.. .++.|. +.+++..++....
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDIV 112 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHHH
Confidence 875 788898 8888999988754
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.7e-14 Score=147.43 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=85.5
Q ss_pred ehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE
Q 009096 414 SSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 414 ~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.|.+.+..+++++|.||++||++|+.+.|.++++++++++ +.|++||+++++.++++|||.++||+++|++|+.+
T Consensus 121 l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 200 (780)
T 3apo_A 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 200 (780)
T ss_dssp CCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSCC
T ss_pred echHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcEe
Confidence 45567888888899999999999999999999999999999976 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHHhcCCCC
Q 009096 493 KEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 493 ~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++.|. +.+.|.++|.+.+.+.
T Consensus 201 ~~~~G~~~~~~l~~~l~~~~~~~ 223 (780)
T 3apo_A 201 VKYNGDRSKESLVAFAMQHVRST 223 (780)
T ss_dssp EECCSCSCHHHHHHHHHTTSCCC
T ss_pred eEecCCCCHHHHHHHHHHhchhh
Confidence 999998 9999999999987654
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-14 Score=117.09 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=74.5
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhH-hH--HHHHhhCC-CeEEEEEeCcCcHHHHHHc--------CCCcccEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISP-FV--NLLCVRYP-YVHFFKVDVEESLAIAKSE--------GVRTVPTF 483 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p-~l--~~l~~~~~-~~~~~~~d~~~~~~~~~~~--------~v~~~Pt~ 483 (543)
.+.+..+...+++++|+||++||++|+.|.| .+ .++++.+. ++.+++||.++.++++..| ||.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 4566677777999999999999999999999 33 45655553 5999999999999999998 99999999
Q ss_pred EEEE-CCeEEEEEcCC------CHHHHHHHHHh
Q 009096 484 KIYK-NGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 484 ~~~~-~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
++++ +|+++...... +.+.+.++|++
T Consensus 109 v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~ 141 (173)
T 3ira_A 109 IIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPR 141 (173)
T ss_dssp EEECTTSCEEEEESSCCSSCBTTBCCHHHHHHH
T ss_pred eeECCCCCceeeeeeCCCCcCCCCCCHHHHHHH
Confidence 9997 99998864322 23456666654
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=136.61 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=72.8
Q ss_pred CeEEeehhhhhhhccCCC--CceeeeeeCCCCccccchhHhHHHHHhhCC---------CeEEEEEeCcCcHHHHHHcCC
Q 009096 409 EVEEISSLEKFKAAISSP--GVSLVHFKEASSEKCEEISPFVNLLCVRYP---------YVHFFKVDVEESLAIAKSEGV 477 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~--~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---------~~~~~~~d~~~~~~~~~~~~v 477 (543)
.+..+ +.+.|++.+... ++++|+||++||++|+.+.|.+++++++++ .+.|++||++++++++++|+|
T Consensus 24 ~V~~L-t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V 102 (470)
T 3qcp_A 24 SVVDL-SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDI 102 (470)
T ss_dssp TEEEC-SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTC
T ss_pred CcEEC-CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCC
Confidence 34444 446677777543 689999999999999999999999999996 399999999999999999999
Q ss_pred CcccEEEEEECCe--EEEEEcC
Q 009096 478 RTVPTFKIYKNGE--KLKEMIN 497 (543)
Q Consensus 478 ~~~Pt~~~~~~g~--~~~~~~g 497 (543)
.++||+++|++|. .+.++.|
T Consensus 103 ~~~PTlilf~~gg~~~~~~y~G 124 (470)
T 3qcp_A 103 NFVPRLFFFYPRDSCRSNEECG 124 (470)
T ss_dssp CSSCEEEEEEESSCCCTTSCCC
T ss_pred CccCeEEEEECCCceEEEEeeC
Confidence 9999999997543 3444555
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-15 Score=122.91 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHH-HHHHcCC--CcccEEEEE-ECCeE
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLA-IAKSEGV--RTVPTFKIY-KNGEK 491 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~-~~~~~~v--~~~Pt~~~~-~~g~~ 491 (543)
+.+......+++++|+||++||++|+.+.|.|.++.+.++ ++.|+.||++..+. ++..|++ .++||+++| ++|++
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 116 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 116 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence 4555556678999999999999999999999998766554 48888899988776 8889998 669999999 79999
Q ss_pred EEEEcC----------C-CHHHHHHHHHhcC
Q 009096 492 LKEMIN----------P-SHQFLEDSANLAP 511 (543)
Q Consensus 492 ~~~~~g----------~-~~~~~~~~~~~~~ 511 (543)
+.++.| . +.++|.+.|++.+
T Consensus 117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l 147 (164)
T 1sen_A 117 HPEIINENGNPSYKYFYVSAEQVVQGMKEAQ 147 (164)
T ss_dssp CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred EEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence 999888 3 7899999998764
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=115.54 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhC--CCeEEEEEe----------------------------CcCcHHHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVD----------------------------VEESLAIAK 473 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d----------------------------~~~~~~~~~ 473 (543)
..++++++.||++||++|+.+.|.+.++.+++ +++.|+.|+ .+....+++
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 115 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ 115 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence 35689999999999999999999999999886 346665554 344568999
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++||++++ ++|+++.++.|. +.+++.++|++.+...
T Consensus 116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 699999999998 9999999999987653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-12 Score=101.95 Aligned_cols=118 Identities=8% Similarity=-0.065 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN--- 311 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--- 311 (543)
++.+|..+...|++++|+..|++++..+|+++..... ++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---------~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNA---------LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 3455899999999999999999999999998732211 2347999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+++.+|.++..+|++++|+..|++++...|+++.+...+..+....++
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 88899999999999999999999999999999999887766665544443
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=110.59 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH-----------------------HHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL-----------------------AIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~-----------------------~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++... .+++.|+|.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 467999999999999999999999999999964 999999988764 7899999999
Q ss_pred ccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 480 VPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 480 ~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
+||++++. +|+++.+..|. +.++++++|++..+...
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~ 146 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEG 146 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCS
T ss_pred CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccc
Confidence 99999997 99999999998 99999999998765543
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=111.57 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=78.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC------------------------cHHHHHHcC--
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE------------------------SLAIAKSEG-- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~------------------------~~~~~~~~~-- 476 (543)
.++++++.||++||++|+.+.|.+.++.+++. ++.|+.|++|. ...+++.||
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 46899999999999999999999999999984 49999999873 355788999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|.++||++++ ++|+++.++.|. +.+++.++|++....
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK 141 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999998888 599999999998 999999999987654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=130.91 Aligned_cols=230 Identities=9% Similarity=-0.015 Sum_probs=151.9
Q ss_pred hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHH
Q 009096 82 AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHL 161 (543)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 161 (543)
|.+....|..+...|+|++|++.|.++++..|.........+......+..+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 55 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE---------------------------- 55 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH----------------------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH----------------------------
Confidence 4556777888888999999999999999888876543222221111111111
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.++..+|.+|...|++++|++.+.+++...+..............++.+
T Consensus 56 -------------------------------~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (434)
T 4b4t_Q 56 -------------------------------TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF 104 (434)
T ss_dssp -------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 1122334444444444444444444444333333322222233444777
Q ss_pred HHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCChhHH
Q 009096 242 NISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------DSYNSILY 315 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~ 315 (543)
+...|++++|+..+++++...+...... ..+..+..+|.++...|+|++|+..+++++.. .+....++
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREKRVF------LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSSCCS------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 7778888888888888875432211000 00111345899999999999999999998765 23346789
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCC---CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 009096 316 CNRAICWSKMGLWENSIEDCNVALRIQP---NY----TKALLRRAVSNEKLGRWSEAVRDYEALRREL 376 (543)
Q Consensus 316 ~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 376 (543)
..+|.+|...|++++|...+++++...+ +. ...+..+|.++...|++++|..+|.++++..
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987642 22 2567788999999999999999999998753
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=112.09 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=80.8
Q ss_pred CceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------cCcHHHHHHcCCCc
Q 009096 427 GVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------------------------EESLAIAKSEGVRT 479 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------------------------~~~~~~~~~~~v~~ 479 (543)
+++++.||++||++|+.+.|.+.++.+++ ++.|+.|++ +....+++.|||.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 89999999999999999999999999999 999999999 46778999999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|+++++ ++|+++.+..|. +.+++++.|+++...+..
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 9998888 699999999998 999999999999876544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=123.40 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHH----HHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIA----SVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY 307 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 307 (543)
...+..+|..+...|++++|+..|+++++..+..+... ..-........+.++|.++..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34567779999999999999999999998433211000 00000011223466899999999999999999999999
Q ss_pred CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-10 Score=114.19 Aligned_cols=334 Identities=9% Similarity=-0.012 Sum_probs=195.3
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC-HHHHHHHHHHHHhc---CCCChhHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRL---DPGYNRAHQ 120 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~ 120 (543)
-..+...+..+...+-.|+++.+..+|++++...| +...|..........++ .+.....|+.++.. +|.+...|.
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34677788888888888999999999999999888 77788887777777663 45567788888874 778888998
Q ss_pred HHHHHHH----HhCCHHHHHHHhcCCCCCCChHH---HhHHHHHHHHHH----HHHhhhhcCCHHHHHHHHHHHHHcCCC
Q 009096 121 RLASLYF----RLGQVENARHHLCFPGHHPDPNE---LLKLQSFEKHLN----RCAESRKIGDWKTVLRETDAAIAIGVD 189 (543)
Q Consensus 121 ~la~~~~----~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~~l~~~p~ 189 (543)
.....+. ..++.+.+...|++++..|.... +..........+ ........+.+..|...+..+....+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 8887754 35678889999999988332211 111111100000 000001112222333333333322221
Q ss_pred CCHHHHHHHHHHHHHccC---------hhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 009096 190 SSPQLVACKAEAHLKLHQ---------NEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGL 260 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 260 (543)
.....|...... ..++ .+.....|++++...|..+..+..+ +..+...|+.++|...|++++.
T Consensus 170 ~s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~y------a~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 170 WSVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFY------SEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp CSHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHH------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHh
Confidence 112222221111 1111 1223344555544444443222222 4444445555555555555555
Q ss_pred cCCCcHHHHHHHHhHH----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 261 LDYSNVEIASVLTNVK----------------------------MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 261 ~~p~~~~~~~~l~~~~----------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
. |.+...+..+.... ....+...+....+.+..+.|...|.++ ...+...
T Consensus 242 ~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~ 319 (493)
T 2uy1_A 242 M-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGP 319 (493)
T ss_dssp H-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCH
T ss_pred C-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCCh
Confidence 5 55443332221110 0011233444555677899999999999 4333345
Q ss_pred hHHhHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 313 ILYCNRAICWSKMG-LWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 313 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
.+|...|.+....+ +.+.|...|+.+++..|+.++.|...+......|+.+.|...|+++ +....++........
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 67776677766666 5999999999999999998888888888888899999999999987 345566655554444
Q ss_pred HH
Q 009096 392 AL 393 (543)
Q Consensus 392 ~l 393 (543)
..
T Consensus 396 ~~ 397 (493)
T 2uy1_A 396 MV 397 (493)
T ss_dssp HH
T ss_pred HC
Confidence 43
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-12 Score=111.36 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=117.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 009096 168 RKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247 (543)
Q Consensus 168 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 247 (543)
...|++++|...++.... +|.....++..+|.++...|++++|+..+++++...............+..+|.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999985554433 5656688899999999999999999999999988666555555556678888999999999
Q ss_pred hHHHHHHHHHHhhc---CCCcH-HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--C----hhHHhH
Q 009096 248 FENAVSSAEKAGLL---DYSNV-EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY--N----SILYCN 317 (543)
Q Consensus 248 ~~~A~~~~~~al~~---~p~~~-~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~ 317 (543)
+++|+..+++++.+ .++++ ..... +..+|.++...|++++|+..+++++...+. + ..++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASAN---------AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHH---------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999877 44333 22111 244788888888888888888887765321 1 233456
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh
Q 009096 318 RAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 318 la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
+|.++...|++++|+..+++++++
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666666666666666666666655
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-13 Score=112.32 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHc---------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSE--------------------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~--------------------------- 475 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++...+...+|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 468999999999999999999999999999965 999999999877766666
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
+|.++||++++ ++|+++.++.|. +.+++.++|++++.....
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 155 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA 155 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence 99999998888 699999999998 999999999998765433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=102.95 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=82.9
Q ss_pred hhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHH
Q 009096 244 SELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWS 323 (543)
Q Consensus 244 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 323 (543)
..|++++|+..|+++++..++++.....+ ..+|.++...|++++|+..|+++++.+|+++.+++++|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~---------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECY---------LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46899999999999999953333322222 458999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 009096 324 KMGLWENSIEDCNVALRIQPNYTKALLRR 352 (543)
Q Consensus 324 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l 352 (543)
.+|++++|+..|++++...|+++.+....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999998765433
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.4e-13 Score=110.62 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=78.5
Q ss_pred CCCceeeeeeCCCCccccch-hHhHHHHHhhCC--CeEEEEEeCc----------------------------CcH----
Q 009096 425 SPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYP--YVHFFKVDVE----------------------------ESL---- 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~--~~~~~~~d~~----------------------------~~~---- 469 (543)
.++++++.||++||++|+.. .|.+.++.++++ ++.|+.|+++ ...
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 46899999999999999996 999999999997 4999998863 122
Q ss_pred -HHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 470 -AIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 470 -~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+++.|||.++||++++ ++|+++.++.|. +.+++.+.|++++...
T Consensus 107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 58999999999998888 599999999998 9999999999987543
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-13 Score=134.32 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=87.6
Q ss_pred ehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 414 SSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 414 ~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+...+.+.+. .+++++|.||++||++|+.+.|.++++++.++ ++.|+++|++.+ +++.+|+|.++||+++|++|
T Consensus 357 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~ 435 (481)
T 3f8u_A 357 VVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPAN 435 (481)
T ss_dssp ECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTT
T ss_pred ecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCC
Confidence 34455666554 48899999999999999999999999999885 499999999998 78999999999999999988
Q ss_pred eE--EEEEcCC-CHHHHHHHHHhcCCCCCC
Q 009096 490 EK--LKEMINP-SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 490 ~~--~~~~~g~-~~~~~~~~~~~~~~~~~~ 516 (543)
.. +.++.|. +.+++.++|++.......
T Consensus 436 ~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~ 465 (481)
T 3f8u_A 436 KKLNPKKYEGGRELSDFISYLQREATNPPV 465 (481)
T ss_dssp CTTSCEECCSCCSHHHHHHHHHHHCSSCCC
T ss_pred CeEeeeEeCCCCCHHHHHHHHHHhcCCccc
Confidence 76 6788898 999999999998765433
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=128.34 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=84.3
Q ss_pred eEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 410 VEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 410 ~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
+..++. +.+...+ ..+++++|.||++||++|+.+.|.+++++..+++ +.++.+|++.+. +.+|+|.++||+++
T Consensus 251 v~~l~~-~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~ 327 (361)
T 3uem_A 251 VKVLVG-KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKF 327 (361)
T ss_dssp SEEECT-TTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEE
T ss_pred cEEeec-CchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEE
Confidence 444444 4555544 6788999999999999999999999999999864 899999999886 68999999999999
Q ss_pred EECC--eEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 486 YKNG--EKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 486 ~~~g--~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|.+| +.+.++.|. +.+.|.++|++..+
T Consensus 328 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~ 357 (361)
T 3uem_A 328 FPASADRTVIDYNGERTLDGFKKFLESGGQ 357 (361)
T ss_dssp ECSSSSCCCEECCSCSSHHHHHHHHTTTSC
T ss_pred EECCCCcceeEecCCCCHHHHHHHHHhcCC
Confidence 9654 677888898 99999999998654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=104.15 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=97.9
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hh
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY-------NR 117 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 117 (543)
|..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH-HPDPNE 150 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 150 (543)
+++.+|.++...|++++|+..|++++. .+++..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 114 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999887 444443
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=110.40 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=78.1
Q ss_pred CCCceeeeeeCCCCccccc-hhHhHHHHHhhCCC--eEEEEEeCc----------------------------CcHH---
Q 009096 425 SPGVSLVHFKEASSEKCEE-ISPFVNLLCVRYPY--VHFFKVDVE----------------------------ESLA--- 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~-~~p~l~~l~~~~~~--~~~~~~d~~----------------------------~~~~--- 470 (543)
.++++++.||++||++|+. +.|.+.++.+++++ +.|+.|+++ ....
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 4689999999999999999 69999999999974 999999862 2333
Q ss_pred ---HHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 471 ---IAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 471 ---~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++.|||.++||++++. +|+++.++.|. +.+++.+.|++++..
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 156 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE 156 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence 89999999999999995 99999999998 999999999988754
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=108.60 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=79.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcH----------------------HHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESL----------------------AIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~----------------------~~~~~~~v~~~ 480 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++... .+++.|+|.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 467999999999999999999999999999965 899999998655 68899999999
Q ss_pred cEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCCCCCCCC
Q 009096 481 PTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~ 518 (543)
||++++ ++|+++.+..|. +.+++.++|++.........
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~~~~ 148 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNEGHH 148 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC------
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccccccc
Confidence 998888 699999999996 55899999999877655443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-13 Score=102.99 Aligned_cols=97 Identities=27% Similarity=0.400 Sum_probs=91.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hhHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY------NRAHQ 120 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (543)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCC
Q 009096 121 RLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
.+|.++..+|++++|+..++++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHhHhhhHhHHHHhH
Confidence 99999999999988888877654
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=99.48 Aligned_cols=80 Identities=20% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--CcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
..+.++.|+++||++|+.+.|.|+++.. ++.|..+|++ ++++++.+|| .++|++ +.||+.+ .+.|+++++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 4578899999999999999999987653 3899999999 8899999999 999986 5689876 5667799999
Q ss_pred HHHHHhcCC
Q 009096 504 EDSANLAPS 512 (543)
Q Consensus 504 ~~~~~~~~~ 512 (543)
+++|+++..
T Consensus 88 ~~~l~~~~~ 96 (100)
T 1wjk_A 88 EKQLRKLSG 96 (100)
T ss_dssp HHHHHSSSC
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-12 Score=106.77 Aligned_cols=141 Identities=14% Similarity=0.003 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 232 FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 232 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
...+..+|.++...|++++|+..+++++...+....... ....+..+|.++...|++++|+.+++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 345677799999999999999999999977654322110 11224568999999999999999999999875442
Q ss_pred ------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 312 ------SILYCNRAICWSKMGLWENSIEDCNVALRIQPN------YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 312 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
..++.++|.++...|++++|+..+++++.+.+. ...++..+|.++...|++++|+.++++++++...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999987432 2467899999999999999999999999987654
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=108.39 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|+++. ...+++.|||
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 467999999999999999999999999998865 9999999987 5789999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCCCCC
Q 009096 478 RTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPSPVY 515 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 515 (543)
.++||++++ ++|+++.+.. +.+++++.|++++....
T Consensus 108 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l~~~~~ 144 (152)
T 2lrn_A 108 VGFPHIILVDPEGKIVAKEL--RGDDLYNTVEKFVNGAK 144 (152)
T ss_dssp CSSCEEEEECTTSEEEEECC--CTTHHHHHHHHHHTSSS
T ss_pred CcCCeEEEECCCCeEEEeeC--CHHHHHHHHHHHHhhcc
Confidence 999999998 6999998863 45678888887655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.1e-12 Score=98.24 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 295 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ChHHHHHHHHHHHHHHhh
Q 009096 375 ELPG--DNEVAESLHNAQVALKKS 396 (543)
Q Consensus 375 ~~p~--~~~~~~~l~~~~~~l~~~ 396 (543)
+.|+ +......+......+++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 9885 445555555555555443
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-13 Score=135.83 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=85.6
Q ss_pred eEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 410 VEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 410 ~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..++. +.|... ...+++++|+||++||++|+.+.|.+++++++++ ++.++++|++.+... . |+|.++||++
T Consensus 360 v~~l~~-~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~ 436 (504)
T 2b5e_A 360 VFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIV 436 (504)
T ss_dssp EEEECT-TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEE
T ss_pred ceeccc-ccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEE
Confidence 444444 455554 4568899999999999999999999999999876 699999999987654 4 9999999999
Q ss_pred EEECCeE--EEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 485 IYKNGEK--LKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 485 ~~~~g~~--~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
+|++|+. +.++.|. +.+++.++|++.....
T Consensus 437 ~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 469 (504)
T 2b5e_A 437 LYPGGKKSESVVYQGSRSLDSLFDFIKENGHFD 469 (504)
T ss_dssp EECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTC
T ss_pred EEeCCceecceEecCCCCHHHHHHHHHhcCCCC
Confidence 9999977 7788898 9999999999986554
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=105.09 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=76.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC----------------------------cCcHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV----------------------------EESLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~----------------------------~~~~~~~~~~ 475 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.++.++. +....+++.|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 468899999999999999999999999999874 88888842 3456799999
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
||.++||++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 99999999999 699999999998 999999999875
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-12 Score=105.80 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhC-CC--eEEEEEeCcCc-------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PY--VHFFKVDVEES-------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~--~~~~~~d~~~~-------------------------~~~~~~~~ 476 (543)
.++++++.||++||++|+.+.|.+.++.+++ ++ +.|+.|+++.. ..++..||
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 4689999999999999999999999999999 54 89999998863 48999999
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
|.++||++++ ++|+++.+.. +.+++.+.|++++.
T Consensus 112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKELLK 146 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHC-
T ss_pred CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHHHc
Confidence 9999999999 6999988765 88899999988753
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=106.88 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=74.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHH-------------------------HHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLA-------------------------IAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~-------------------------~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++...+ +++.|+|
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 467999999999999999999999999999865 9999999997766 9999999
Q ss_pred CcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 478 RTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 478 ~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
.++||++++ ++|+++.+..|. +.+++.+.+.+
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 999999999 699999998888 66666665554
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-12 Score=105.52 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=76.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------cHHHHHHcCCCcccEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------SLAIAKSEGVRTVPTF 483 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------~~~~~~~~~v~~~Pt~ 483 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.|+.|+++. ...+++.|+|.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 46799999999999999999999999999997 59999999987 6789999999999997
Q ss_pred EEE-ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 484 KIY-KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
+++ ++|+++.++.|. +.+++.+.+++...
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~ 152 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG 152 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHHHHHHTTC-
T ss_pred EEEcCCCCEEEEEeCCCccchHHHHHHHHhhcc
Confidence 777 699999999997 56667766665443
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=106.92 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=80.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeC-----------------------cCcHHHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDV-----------------------EESLAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~-----------------------~~~~~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+. +....+++.|||.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 467999999999999999999999999999864 88876653 45668999999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPVYKLP 518 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~ 518 (543)
+||++++ ++|+++.++.|. +.+++.+.|++++....+..
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~~~~ 147 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSDAEG 147 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCSSCC
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhhhcc
Confidence 9999998 699999999998 99999999998876554443
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=109.57 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=73.6
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCcc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTV 480 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~ 480 (543)
..++++++.||++||++|+.+.|.+.++.++ ++.|+.|++ +....++..|||.++
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 126 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 126 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence 4678999999999999999999999999887 788888873 456679999999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|+++++ ++|+++.+..|. +.+++.+.|++.+
T Consensus 127 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 159 (168)
T 2b1k_A 127 PETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW 159 (168)
T ss_dssp SEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred CEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence 965555 699999999998 9999988888654
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-12 Score=105.38 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=78.3
Q ss_pred CCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcC--cHHHHHHcCCCcccEEEEEE-C-CeEEEEE
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEE--SLAIAKSEGVRTVPTFKIYK-N-GEKLKEM 495 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~--~~~~~~~~~v~~~Pt~~~~~-~-g~~~~~~ 495 (543)
..+++++|+|+++||..|+.|...+ .++.+.+ .++.++++|++. ...+.+.|+|.++||++++. + |+++.++
T Consensus 40 ~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~ 119 (153)
T 2dlx_A 40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW 119 (153)
T ss_dssp HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEE
T ss_pred HcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeec
Confidence 4588999999999999999997543 3343333 368999999975 45689999999999999996 5 8888887
Q ss_pred cCCCHHHHHHHHHhcCCCCCCCCccccCCCC
Q 009096 496 INPSHQFLEDSANLAPSPVYKLPLVTLACSP 526 (543)
Q Consensus 496 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (543)
.|.+++++.+.|++.+.......+-++++.|
T Consensus 120 ~g~~~~~fl~~L~~~l~~~~~~~~~~~~~~~ 150 (153)
T 2dlx_A 120 HQLDVSSFLDQVTGFLGEHGQLDGLSSSSGP 150 (153)
T ss_dssp SSCCHHHHHHHHHHHHHHTCSCSSCCCCCSC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 7779999999998877555444443333333
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=136.71 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=88.9
Q ss_pred eEEeehhhhhh-hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFK-AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~-~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..++. +.+. .+...+++++|.||++||++|+.+.|.++++++++. ++.|+.+|+++++.++++|||.++||+++|+
T Consensus 659 v~~l~~-~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 737 (780)
T 3apo_A 659 SIDLTP-QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQ 737 (780)
T ss_dssp SEEECH-HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cccCCH-HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEc
Confidence 334443 4454 455678899999999999999999999999999985 5999999999999999999999999999999
Q ss_pred CCeEEEEEcC----C-CHHHHHHHHHhcCCC
Q 009096 488 NGEKLKEMIN----P-SHQFLEDSANLAPSP 513 (543)
Q Consensus 488 ~g~~~~~~~g----~-~~~~~~~~~~~~~~~ 513 (543)
+|+++.++.| . +.++|.++|++.+..
T Consensus 738 ~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~ 768 (780)
T 3apo_A 738 YERAKKSIWEEQINSRDAKTIAALIYGKLET 768 (780)
T ss_dssp EETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred CCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence 9998887777 4 999999999998753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=101.97 Aligned_cols=92 Identities=24% Similarity=0.428 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY------TKALLRRA 353 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la 353 (543)
.+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++.+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888888888888888888888888888888888888 78888888
Q ss_pred HHHHHccCHHHHHHHHHH
Q 009096 354 VSNEKLGRWSEAVRDYEA 371 (543)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~ 371 (543)
.++..+|++++|+..+++
T Consensus 86 ~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHhHhhhHhHHHH
Confidence 888888877777665543
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=105.26 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc------------------Cc------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE------------------ES------------------ 468 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~------------------~~------------------ 468 (543)
.++++++.||++||++|+.+.|.+.++.++++++.|+.|+++ ..
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence 468999999999999999999999999999999999999988 44
Q ss_pred ----HHHHHHcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 469 ----LAIAKSEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 469 ----~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
..+++.|+|.++||++++ ++|+++. .... +.+++++.|++++.
T Consensus 116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp EECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC--
T ss_pred EeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhc
Confidence 278999999999999999 5999988 3334 79999999998764
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-12 Score=114.37 Aligned_cols=95 Identities=13% Similarity=-0.054 Sum_probs=78.6
Q ss_pred hhhhhcc--CCCCceeeeee-----CCCCccccchhHhHHHHHhhC---CCeEEEEEeCcCcHHHHHHcCCCcccEEEEE
Q 009096 417 EKFKAAI--SSPGVSLVHFK-----EASSEKCEEISPFVNLLCVRY---PYVHFFKVDVEESLAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 417 ~~~~~~i--~~~~~~lv~f~-----~~~c~~c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~ 486 (543)
+.+.+.+ ...+++++.|| ++||++|+.+.|.++++++++ +.+.|+++|++++++++++|||+++||+++|
T Consensus 9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~ 88 (229)
T 2ywm_A 9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE 88 (229)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence 3444444 33455655555 889999999999999997766 3499999999999999999999999999999
Q ss_pred ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 487 KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 487 ~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+...++.|. +.+++..++....
T Consensus 89 ~~~~~~~~~~G~~~~~~l~~~~~~~~ 114 (229)
T 2ywm_A 89 GDKDYGIRYIGLPAGLEFTTLINGIF 114 (229)
T ss_dssp SSSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred CCCcccceecCCccHHHHHHHHHHHH
Confidence 988888899998 8899999988754
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-12 Score=106.43 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=74.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----------------------CcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----------------------ESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----------------------~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+.+.|.+.++.++ +++.|+.|+++ ....+++.|+|.++|
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 119 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP 119 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccC
Confidence 468999999999999999999999999888 66888888864 345789999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|++++ ++|+++.++.|. +.+++.++|++++
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l 151 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 151 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 76666 699999999998 9999999888754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=90.49 Aligned_cols=86 Identities=30% Similarity=0.462 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 009096 45 AVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124 (543)
Q Consensus 45 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (543)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 009096 125 LYFRLG 130 (543)
Q Consensus 125 ~~~~~g 130 (543)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=103.26 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCc-----------------------HHHHHHcCCCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEES-----------------------LAIAKSEGVRT 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~-----------------------~~~~~~~~v~~ 479 (543)
.++++++.||++||++|+.+.|.+.++.+++++ +.|+.|+++.. ..+++.|+|.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 468999999999999999999999999999965 89999998875 34889999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCCCCCCC
Q 009096 480 VPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPSPVYKL 517 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~ 517 (543)
+|+++++ ++|+++.++.|. +.+++.++|+++.......
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~~ 148 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREG 148 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-------
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhhc
Confidence 9976666 699999999986 6779999999987654433
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-12 Score=102.10 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHH---HHhhC--CCeEEEEEeCcCcHH------------------------HHHHcC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNL---LCVRY--PYVHFFKVDVEESLA------------------------IAKSEG 476 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~--~~~~~~~~d~~~~~~------------------------~~~~~~ 476 (543)
++++++.||++||++|+...|.+.+ +.+++ .++.++.|+.+...+ +++.|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 5899999999999999999999999 88888 459999999987643 478899
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHh
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
|.++||++++ ++|+++.+..| .++++++|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CCcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 9999998888 59999988654 7888888864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-12 Score=104.28 Aligned_cols=146 Identities=14% Similarity=0.007 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH
Q 009096 193 QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVL 272 (543)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 272 (543)
.++..+|.++...|++++|+..+++++...+...........+..+|.++...|++++|+..+++++...+......
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 34555666666666666666666666665554444444445667779999999999999999999987654321111
Q ss_pred HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 273 TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS------YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 273 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
.....+..+|.++...|++++|+..++++++..+ ....++..+|.++...|++++|+..+++++++...
T Consensus 87 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 ---VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 0112245689999999999999999999997632 22568899999999999999999999999987544
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=102.69 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=71.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHH-----------------------HHHHcCCCcc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLA-----------------------IAKSEGVRTV 480 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~-----------------------~~~~~~v~~~ 480 (543)
++++++.||++||++|+...|.+.++.+++++ +.|+.|+++...+ +++.|||.++
T Consensus 35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~ 114 (152)
T 2lrt_A 35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL 114 (152)
T ss_dssp GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence 57999999999999999999999999998864 9999999987654 8899999999
Q ss_pred cEEEEEE-CCeEEEEEcCC-CHHHHHHHH
Q 009096 481 PTFKIYK-NGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 481 Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~ 507 (543)
||++++. +|+++.+..|. +.++....+
T Consensus 115 P~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 115 PSVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp SEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred ceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 9999995 99999999998 655554443
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=106.88 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=76.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC-----------------------------cCcHHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV-----------------------------EESLAIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~-----------------------------~~~~~~~~~ 474 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|++ |....+++.
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 358999999999999999999999999999977 99999988 345679999
Q ss_pred cCCCcccEEEEE-ECCeEEEE--------EcCC-CHHHHHHHHHhcCCCC
Q 009096 475 EGVRTVPTFKIY-KNGEKLKE--------MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 475 ~~v~~~Pt~~~~-~~g~~~~~--------~~g~-~~~~~~~~~~~~~~~~ 514 (543)
|+|.++||++++ ++|+++.+ ..|. +.+++++.|++++...
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 999999999888 69999887 2233 6789999999876543
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=109.50 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=76.6
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-----------------------------CcHHHHH
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-----------------------------ESLAIAK 473 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-----------------------------~~~~~~~ 473 (543)
++ ++++.||++||++|+...|.+.++.++++ ++.|+.|+++ ....+++
T Consensus 45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 124 (196)
T 2ywi_A 45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK 124 (196)
T ss_dssp CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence 44 59999999999999999999999999886 4999999983 4567999
Q ss_pred HcCCCcccEEEEE-ECCeEEEE---------EcCC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKE---------MINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~---------~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++||++++ ++|+++.+ +.|. +.+++++.|++++...
T Consensus 125 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 125 AYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp HHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred HhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 9999999999888 49999988 4577 8999999999886543
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=101.71 Aligned_cols=85 Identities=12% Similarity=0.230 Sum_probs=74.1
Q ss_pred CCCceeeeeeCCCCcc--ccchhHhHHHHHhhC---CCeEEEEEeCcCcH-------------------------HHHHH
Q 009096 425 SPGVSLVHFKEASSEK--CEEISPFVNLLCVRY---PYVHFFKVDVEESL-------------------------AIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~--c~~~~p~l~~l~~~~---~~~~~~~~d~~~~~-------------------------~~~~~ 474 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.|+.|++|..+ .+++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4679999999999999 999999999999998 45999999988654 79999
Q ss_pred cCCCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 475 EGVRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|||.++|+++++ ++|+++.+.. +.+++++.|++++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ll 147 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKILAKNL--RGEELKKKIENIV 147 (150)
T ss_dssp TTCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHHH
T ss_pred cCCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHHH
Confidence 999999999999 6999998864 7788888887653
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=101.35 Aligned_cols=85 Identities=11% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHH---HHhhCC--CeEEEEEeCcCcHHH------------------------HHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNL---LCVRYP--YVHFFKVDVEESLAI------------------------AKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~---l~~~~~--~~~~~~~d~~~~~~~------------------------~~~~ 475 (543)
.++++++.||++||++|+...|.+.+ +.++++ ++.|+.|+++...+. ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 46899999999999999999999888 887773 599999999866543 3489
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|.++||++++ ++|+++.+ +.+.++++++|++..
T Consensus 106 ~v~~~P~~~lid~~G~i~~~--~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKRVILK--DTSMEQLIDYLATQA 140 (142)
T ss_dssp CCCSSSEEEEECTTCBEEEC--SCCHHHHHHHHHC--
T ss_pred CCCCCCeEEEECCCCCEEec--CCCHHHHHHHHHHHc
Confidence 99999999999 59998772 448999999998764
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=105.31 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.+.++.++ ++.|+.|++ |....+++.|+|.++|
T Consensus 57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 134 (176)
T 3kh7_A 57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP 134 (176)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence 468999999999999999999999999887 788888885 3445789999999999
Q ss_pred EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 482 TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 482 t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++++ ++|+++.+..|. +.+++.+.|++.+
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 166 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY 166 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 77777 599999999998 9988888887654
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=106.46 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--e------EEEEEeCcC-cHHHHHHc--------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--V------HFFKVDVEE-SLAIAKSE-------------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~------~~~~~d~~~-~~~~~~~~-------------------- 475 (543)
.++++++.||++||++|+.+.|.|.++.+++++ + .|+.|+++. ..+..++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 468999999999999999999999999998854 7 999999998 66666666
Q ss_pred -----CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 476 -----GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 476 -----~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|.++|+++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 78999976666 699999999998 99999999988653
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=99.50 Aligned_cols=83 Identities=10% Similarity=0.061 Sum_probs=70.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCc--------------------------HHHHHHcC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES--------------------------LAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~--------------------------~~~~~~~~ 476 (543)
.++++++.||++||++|+...|.+.++.++|+ ++.|+.|++|.. ..+++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 46799999999999999999999999999996 499999988743 25789999
Q ss_pred CCcccEEEEEE-CCeEEEEEcCCCHHHHHHHHHh
Q 009096 477 VRTVPTFKIYK-NGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 477 v~~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
|.++||++++. +|+++.+. .+.+++++.|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~--~~~~~l~~~l~~ 142 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVIIAAN--VTPEKLTEILKA 142 (143)
T ss_dssp GGGCCCEEEECTTSBEEEES--CCHHHHHHHHTC
T ss_pred CCCCCcEEEECCCCEEEEcc--CCHHHHHHHHHh
Confidence 99999888886 99998874 467888888865
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-12 Score=115.86 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=61.5
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.+++||++|||+|++++|.+++++++++.+.+.++|. +++++++++++|+++||+++ ||+. +.|. +.++++++
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L~~~ 274 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEALAVA 274 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHHHHH
Confidence 4689999999999999999999998875222222233 34789999999999999554 9974 7798 99999999
Q ss_pred HHhc
Q 009096 507 ANLA 510 (543)
Q Consensus 507 ~~~~ 510 (543)
++-.
T Consensus 275 l~~~ 278 (291)
T 3kp9_A 275 SGYP 278 (291)
T ss_dssp TCCC
T ss_pred HCCC
Confidence 8743
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-12 Score=90.21 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=56.7
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCc-CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC--CHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVE-ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP--SHQFLE 504 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~--~~~~~~ 504 (543)
++.|+++||++|+.+.|.++++.+++. .+.++.+|.+ +..+++.++||+++||+++ ||+.+. .|. +.++|+
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l~ 78 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDLK 78 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHHC
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHhh
Confidence 678999999999999999999988774 3666666665 5788999999999999877 998764 343 666653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=93.07 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChh-HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSI-LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
.+|..+...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+..|+++++++|++..++.+ +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4688888888888888888888888888888 88888888888888888888888888888888877754 66
Q ss_pred HHHHHHHHHHHHhcCCCCh
Q 009096 362 WSEAVRDYEALRRELPGDN 380 (543)
Q Consensus 362 ~~~A~~~~~~al~~~p~~~ 380 (543)
+.+|+..|+++...+|+++
T Consensus 77 ~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHhccCcccc
Confidence 7788888888887777654
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-12 Score=99.52 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=66.4
Q ss_pred hhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHHHHcCCCcccEEEEEECCeEE
Q 009096 418 KFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIAKSEGVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 492 (543)
.+.+.+. .+++++ ||++||++|+.+.|.|+++..+ +.++.+|.+.. ..+++.|||.++||+ |.||+.+
T Consensus 12 ~~~~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v 84 (116)
T 2e7p_A 12 KAKELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQI 84 (116)
T ss_dssp HHHHHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred HHHHHHc-CCCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 3444444 345555 9999999999999999998655 35666666655 579999999999999 6699998
Q ss_pred EEEcCC----CHHHHHHHHHhc
Q 009096 493 KEMINP----SHQFLEDSANLA 510 (543)
Q Consensus 493 ~~~~g~----~~~~~~~~~~~~ 510 (543)
.++.|. +.++|.++|++.
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~ 106 (116)
T 2e7p_A 85 GGCDTVVEKHQRNELLPLLQDA 106 (116)
T ss_dssp ECHHHHHHHHHTTCHHHHHHHT
T ss_pred CChHHHHHHHhCChHHHHHHHc
Confidence 876654 677899999875
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=102.37 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.+++++++||++||++|+.+.|.+.++.++++ ++.|+.|++|.. ..+++.|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 46899999999999999999999999999886 488999988876 689999999
Q ss_pred CcccEEEEEE-C-CeEEEEEc
Q 009096 478 RTVPTFKIYK-N-GEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~-~-g~~~~~~~ 496 (543)
.++||+++++ + |+++.+..
T Consensus 127 ~~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEeCCCCEEEeccc
Confidence 9999999997 4 99988754
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=100.55 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=63.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 46799999999999999999999999999886 589999988763 478999999
Q ss_pred CcccEEEEEE--CCeEEEEEc
Q 009096 478 RTVPTFKIYK--NGEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~~ 496 (543)
.++||+++++ +|+++.+..
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~~ 127 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVVTTRA 127 (146)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEECCCCeEEEecc
Confidence 9999999997 999988653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=88.77 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred cCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 307 YDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 307 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|.+.+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 4799999999999999999999999999999999999999999999999999999999999999999998754443
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=108.93 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=83.4
Q ss_pred EeehhhhhhhccCC-CCceeeeeeCCC--CccccchhHhHHHHHhhCCC------eEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 412 EISSLEKFKAAISS-PGVSLVHFKEAS--SEKCEEISPFVNLLCVRYPY------VHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 412 ~~~~~~~~~~~i~~-~~~~lv~f~~~~--c~~c~~~~p~l~~l~~~~~~------~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
......++.+.+.. .+++++.||++| |++|+.+.|.++++++.++. +.|+++|++++++++++|||.++||
T Consensus 10 ~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt 89 (243)
T 2hls_A 10 SEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPT 89 (243)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCE
Confidence 34455666666644 679999999999 99999999999999998766 9999999999999999999999999
Q ss_pred EEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 483 FKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 483 ~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++| +| ..++.|. +.+++..++..++
T Consensus 90 ~~i~-~g--~~~~~G~~~~~~l~~fv~~~l 116 (243)
T 2hls_A 90 VAFL-GG--EVRWTGIPAGEEIRALVEVIM 116 (243)
T ss_dssp EEET-TT--TEEEESCCCTTHHHHHHHHHH
T ss_pred EEEE-CC--ceeEcCCCcHHHHHHHHHHHH
Confidence 9999 77 6778888 7788988888754
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=100.03 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 46799999999999999999999999999886 589999988863 579999999
Q ss_pred CcccEEEEEE--CCeEEEEEc
Q 009096 478 RTVPTFKIYK--NGEKLKEMI 496 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~~ 496 (543)
.++||++++. +|+++.+..
T Consensus 107 ~~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp CSSSEEEEEETTTCCEEESCH
T ss_pred CCCCEEEEEECCCCcEEeccc
Confidence 9999999996 999888653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-10 Score=85.35 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+|.++..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 4555555555555555555555555555555555555555555555555555555555555555555555555443
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=120.17 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
.+..++.||++||++|+.+.|.+++++..++++.|.++|++++++++++|||+++||+++ ||+.+.+ |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999977 9998866 88 999999
Q ss_pred HHHHhcC
Q 009096 505 DSANLAP 511 (543)
Q Consensus 505 ~~~~~~~ 511 (543)
++|++..
T Consensus 193 ~~l~~~~ 199 (521)
T 1hyu_A 193 AKVDTGA 199 (521)
T ss_dssp HHHCCSS
T ss_pred HHHhhcc
Confidence 9998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-10 Score=90.93 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 328 (543)
++|+..|+++++.+|++..++ ..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLR------------FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHH------------HHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 468899999999999998875 34799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcc
Q 009096 329 ENSIEDCNVALRIQPN--YTKALLRRAVSNEKLG 360 (543)
Q Consensus 329 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 360 (543)
++|+..|++++++.|+ +..+...+...+..++
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999999874 4455555555544443
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-11 Score=114.09 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHHc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
.+++++|.||++||++|+.+.|.|.++.++++ ++.|+.|+++. ...+++.|
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 36799999999999999999999999999986 49999998652 35789999
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|.++||++++ ++|+++.++.|. +.++++++|++++
T Consensus 161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL 198 (352)
T 2hyx_A 161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198 (352)
T ss_dssp TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999998888 699999999998 9999999998764
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=105.95 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=75.3
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc-----------------------------CcHHHHH
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE-----------------------------ESLAIAK 473 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~-----------------------------~~~~~~~ 473 (543)
++ ++++.||++||++|+...|.|.++.+++++ +.|+.|+++ ....+++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 137 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK 137 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence 45 599999999999999999999999999964 999999983 4568999
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEc---------CC-CHHHHHHHHHhcCCCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMI---------NP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~~~~~~~~~~~~~ 514 (543)
.|+|.++|+++++ ++|+++.+.. +. +.+++++.|++++...
T Consensus 138 ~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 138 AYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp HHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred HcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence 9999999999999 6999987632 23 6899999999987553
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=99.23 Aligned_cols=71 Identities=14% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.++++++.||++||++|+.+.|.+.++.++++ ++.++.|+++.. ..+++.|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 46799999999999999999999999999886 588999988763 468999999
Q ss_pred CcccEEEEEE--CCeEEEEE
Q 009096 478 RTVPTFKIYK--NGEKLKEM 495 (543)
Q Consensus 478 ~~~Pt~~~~~--~g~~~~~~ 495 (543)
.++||+++++ +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 107 ESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEecc
Confidence 9999999998 89988765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=88.42 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=73.7
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hhHHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY--NRAHQ 120 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 120 (543)
.+|.++..++.+|.+++..|++++|+..|+++++.+|+++.+++.+|.+|..+|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999987653 34444
Q ss_pred HHHHHHHHhC
Q 009096 121 RLASLYFRLG 130 (543)
Q Consensus 121 ~la~~~~~~g 130 (543)
.+..++...+
T Consensus 82 ~l~~~l~~~~ 91 (100)
T 3ma5_A 82 ELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 5555544433
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-11 Score=88.13 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=62.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcC--CCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEG--VRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|+++||++|+.+.|.|+++..+++++.|..+|++.+ +++++.+| +.++|++ |.||+.+. |. +++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~l 75 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TDF 75 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HHH
Confidence 677999999999999999999999888999999999765 48999999 9999998 45898764 43 577
Q ss_pred HHHHHh
Q 009096 504 EDSANL 509 (543)
Q Consensus 504 ~~~~~~ 509 (543)
.+++++
T Consensus 76 ~~~~~~ 81 (85)
T 1ego_A 76 AAWVKE 81 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=100.70 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=75.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCc-----HHHHHHcCCC-------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEES-----LAIAKSEGVR------------------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~-----~~~~~~~~v~------------------- 478 (543)
.++++++.||++||++|+...|.+.++.++++ ++.++.|+++.. ..+.+++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 46799999999999999999999999999986 599999988764 4566777774
Q ss_pred ----cccEEEEE-ECCeEEEEEcCC-C--HHHHHHHHHhcCCC
Q 009096 479 ----TVPTFKIY-KNGEKLKEMINP-S--HQFLEDSANLAPSP 513 (543)
Q Consensus 479 ----~~Pt~~~~-~~g~~~~~~~g~-~--~~~~~~~~~~~~~~ 513 (543)
++|+++++ ++|+++.++.|. + .+++.+.|++++..
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 89998888 699999999997 4 78999999987654
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-12 Score=106.20 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHH-HHhhCC---CeEEEEEeCcCcHHHHHHc----------------------C--
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNL-LCVRYP---YVHFFKVDVEESLAIAKSE----------------------G-- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~-l~~~~~---~~~~~~~d~~~~~~~~~~~----------------------~-- 476 (543)
.++++++.||++||++|+.+.|.+.+ +..++. ++.++.|+++..++..++| +
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 46789999999999999999999998 887775 4889999888654434333 3
Q ss_pred CCcccEEEEE-ECCeEEEEEcCCCHHHHHHHHHhcCCC
Q 009096 477 VRTVPTFKIY-KNGEKLKEMINPSHQFLEDSANLAPSP 513 (543)
Q Consensus 477 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~ 513 (543)
+.++||++++ ++|+++.+..|.+++++.++|+++...
T Consensus 112 ~~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVKLTRLYNEEEFASLVQQINEM 149 (159)
Confidence 6779998888 799999999898788888888876543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-08 Score=100.32 Aligned_cols=313 Identities=6% Similarity=-0.089 Sum_probs=203.8
Q ss_pred CCCCCCccccccccCHHHHHHHhhHHHhcCC-HHHHHHHHHHHHhc---CCcchhhHHhHHHHHH----HcCCHHHHHHH
Q 009096 33 NNNNNNVKTSNVAVDAEEVKRAGNEMYRKGN-FVEALKLYDKAISM---SPENAAYRSNRAATLT----ALGRLTEAVSD 104 (543)
Q Consensus 33 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~ 104 (543)
+...+++++...| +.+.|..........+. .+.....|+.++.. +|.+...|......+. ..++.+.+...
T Consensus 33 ~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~i 111 (493)
T 2uy1_A 33 LESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNG 111 (493)
T ss_dssp HHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 3444566666666 88898888887777663 45677788998874 7778888887776654 35678899999
Q ss_pred HHHHHhcCCCChhH-HHHHHHHHH-------------HhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhh
Q 009096 105 CEEAVRLDPGYNRA-HQRLASLYF-------------RLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAES 167 (543)
Q Consensus 105 ~~~al~~~p~~~~~-~~~la~~~~-------------~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~ 167 (543)
|++++..-+....- |......-. ....+..|...|..+.. ... ...|......-
T Consensus 112 y~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s---------~~~W~~y~~~E 182 (493)
T 2uy1_A 112 YMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS---------VKNAARLIDLE 182 (493)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---------HHHHHHHHHHH
T ss_pred HHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHH
Confidence 99999953333222 221111111 11122223333222211 000 01121111111
Q ss_pred hhc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHH--------
Q 009096 168 RKI--G-----DWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKF-------- 232 (543)
Q Consensus 168 ~~~--~-----~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------- 232 (543)
... + ..+.....|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+...+..+
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~ 260 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA 260 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH
Confidence 110 0 1344567788888877765 777888888888888888888888888887 7765433222
Q ss_pred --------------------------HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 233 --------------------------LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 233 --------------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
..|...+......+..+.|...|+++ ...+.....+. ..|.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i------------~~A~ 327 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFI------------YCAF 327 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHH------------HHHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHH------------HHHH
Confidence 12333345555677889999999999 43222333331 1344
Q ss_pred HHHhcC-CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 287 NLFSSR-RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 287 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
.....+ +.+.|...|+.+++..|+++..|...+......|+.+.|...|+++ +.....|..........|+.+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH
Confidence 444444 6999999999999999999988888888889999999999999998 34678888888888888999999
Q ss_pred HHHHHHHHh
Q 009096 366 VRDYEALRR 374 (543)
Q Consensus 366 ~~~~~~al~ 374 (543)
.+.++++++
T Consensus 404 r~v~~~~~~ 412 (493)
T 2uy1_A 404 RELVDQKMD 412 (493)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888775
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=97.82 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhCC-----CeEEEEEeCcCc----------------------------HH
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRYP-----YVHFFKVDVEES----------------------------LA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~~-----~~~~~~~d~~~~----------------------------~~ 470 (543)
.++++++.||++||++ |+...|.+.++.++++ ++.|+.|++|.. ..
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 4679999999999998 9999999999999997 699999998742 35
Q ss_pred HHHHcCC---------------CcccEEEEEECCeEEEEEcCC---CHHHHHHHHHhcC
Q 009096 471 IAKSEGV---------------RTVPTFKIYKNGEKLKEMINP---SHQFLEDSANLAP 511 (543)
Q Consensus 471 ~~~~~~v---------------~~~Pt~~~~~~g~~~~~~~g~---~~~~~~~~~~~~~ 511 (543)
+++.||| .++||++++.+|+++.++.|. +.+++.+.|++++
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~ll 172 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL 172 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence 7777764 578998888899999998885 8899999998753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-10 Score=109.76 Aligned_cols=132 Identities=15% Similarity=0.052 Sum_probs=112.1
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY--- 307 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--- 307 (543)
+..+..+..+|++++|+..++++++ +.|+++.....+++ +|.+|..+|+|++|+.++++++++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~n---------La~~y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSI---------ASEVLSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---------HHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3446667889999999999999985 46788887766654 899999999999999999999975
Q ss_pred -----CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 308 -----DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT---KALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 308 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
+|+-+..+++||.+|..+|++++|+..|++|+++ .|+++ +....++.++..++.+++|...|.++.+
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678999999999999999999999999975 57776 5567899999999999999999999865
Q ss_pred cC
Q 009096 375 EL 376 (543)
Q Consensus 375 ~~ 376 (543)
..
T Consensus 464 ~~ 465 (490)
T 3n71_A 464 AA 465 (490)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=85.31 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchh-hHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISMSPENAA-YRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999988754
Q ss_pred CCHHHHHHHhcCCCC
Q 009096 130 GQVENARHHLCFPGH 144 (543)
Q Consensus 130 g~~~~A~~~~~~a~~ 144 (543)
+.+.+++..|++++.
T Consensus 75 ~~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 75 KMVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHHhc
Confidence 567788888888765
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=97.88 Aligned_cols=88 Identities=14% Similarity=0.056 Sum_probs=75.0
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC------CCeEEEEEeCcCc----------------------------H
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY------PYVHFFKVDVEES----------------------------L 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~------~~~~~~~~d~~~~----------------------------~ 469 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.|+.|++|.. .
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA 104 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3679999999999998 999999999999887 4799999988731 2
Q ss_pred HHHHHcCCCccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 470 AIAKSEGVRTVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 470 ~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.+++.|||..+| +++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 588999999988 66666 699999999998 99999999987653
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-11 Score=101.71 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred CC-ceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCcCc-------------------------HHHHHHc
Q 009096 426 PG-VSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVEES-------------------------LAIAKSE 475 (543)
Q Consensus 426 ~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~-------------------------~~~~~~~ 475 (543)
++ ++++.||++||++|+.+.|.+.++.+++ +++.++.|+++.. ..+++.|
T Consensus 25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (143)
T 2lus_A 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY 104 (143)
Confidence 45 8999999999999999999999999988 4688888888754 3689999
Q ss_pred CCCcccEEEEEE-CCeEEEEEcC
Q 009096 476 GVRTVPTFKIYK-NGEKLKEMIN 497 (543)
Q Consensus 476 ~v~~~Pt~~~~~-~g~~~~~~~g 497 (543)
+|.++||++++. +|+++.+..+
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 105 GITGIPALVIVKKDGTLISMNGR 127 (143)
Confidence 999999999997 9999887543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-09 Score=85.38 Aligned_cols=119 Identities=10% Similarity=-0.081 Sum_probs=103.4
Q ss_pred hcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH
Q 009096 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK 324 (543)
Q Consensus 245 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 324 (543)
.+++++|+.+|+++.+....... +|.++...+.+++|+++|+++.+. .++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----------------lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----------------LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----------------HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----------------HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHc
Confidence 35789999999999987644332 488899999999999999999987 679999999999999
Q ss_pred ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 325 ----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 325 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
.+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.. ++.+...
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 89999999999999987 789999999999999 999999999999999984 4444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=85.96 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhccCCCChhHHhHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHH
Q 009096 294 YSEACSAYGEGLKYDSYNSILYCNRAICWSKMG---LWENSIEDCNVALRIQ-P-NYTKALLRRAVSNEKLGRWSEAVRD 368 (543)
Q Consensus 294 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 368 (543)
...+.+.|.+.++.+|.+.++.+++|.++.+.+ +.++++..++.+++.+ | ++.+.+|++|..++++|+|++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456777888888888999999999999999988 6779999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 369 YEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 369 ~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++++++|++.++......+...+.+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887777666644
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=104.89 Aligned_cols=98 Identities=8% Similarity=0.105 Sum_probs=81.3
Q ss_pred hhhhhhccCC-CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCCc--ccEEEEEECC
Q 009096 416 LEKFKAAISS-PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVRT--VPTFKIYKNG 489 (543)
Q Consensus 416 ~~~~~~~i~~-~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~~--~Pt~~~~~~g 489 (543)
.+.+...... .+++++.|+++||++|+.+.|.+.++++++.+ +.|+.+|++ +.+.+++.|||.+ +||++++.+|
T Consensus 124 ~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~ 203 (361)
T 3uem_A 124 EQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLE 203 (361)
T ss_dssp TTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC
T ss_pred cccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcC
Confidence 3444454444 45678999999999999999999999999976 999999999 7899999999998 9999999987
Q ss_pred eEEEEEc---CC-CHHHHHHHHHhcCCC
Q 009096 490 EKLKEMI---NP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 490 ~~~~~~~---g~-~~~~~~~~~~~~~~~ 513 (543)
....++. |. +.+.|++|++.++..
T Consensus 204 ~~~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 204 EEMTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp --CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred CcccccCCCccccCHHHHHHHHHHHhcC
Confidence 6655654 55 999999999987654
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=95.85 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=74.2
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC------CCeEEEEEeCcCc----------------------------H
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY------PYVHFFKVDVEES----------------------------L 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~------~~~~~~~~d~~~~----------------------------~ 469 (543)
.++++++.||++||++ |+...|.+.++.+++ +++.++.|++|.. .
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~ 101 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 101 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3679999999999998 999999999998877 3788888888752 2
Q ss_pred HHHHHcCCCccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 470 AIAKSEGVRTVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 470 ~~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.+++.|||..+| +++++ ++|+++.++.|. +++++.+.|++++.
T Consensus 102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 161 (164)
T 2ggt_A 102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 161 (164)
T ss_dssp HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 488999999999 55555 699999999998 99999999987653
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=97.75 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=72.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------cH---HHH-H-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------SL---AIA-K----------------- 473 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~~---~~~-~----------------- 473 (543)
.++++++.||++||++|+...|.+.++.+++++ +.|+.|++|. .. ..+ +
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~ 126 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 126 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence 467999999999999999999999999998864 9999998862 11 122 2
Q ss_pred ------------HcCCCccc------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCCC
Q 009096 474 ------------SEGVRTVP------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 474 ------------~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.++|.++| +++++ ++|+++.++.|. +++++.+.|++++...
T Consensus 127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 187 (190)
T 2vup_A 127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLEST 187 (190)
T ss_dssp TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence 24888899 65555 699999999998 9999999999876543
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=93.25 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=69.1
Q ss_pred CCc-eeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCc---------------------CcHHHHHHcCCCc-
Q 009096 426 PGV-SLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE---------------------ESLAIAKSEGVRT- 479 (543)
Q Consensus 426 ~~~-~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~---------------------~~~~~~~~~~v~~- 479 (543)
++. +++.|| ++||++|+...|.+.++.++++ ++.|+.|++| ....+++.|||.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 455 999999 9999999999999999999984 4899999887 4568999999999
Q ss_pred ---ccEEEEE-ECCeEEEEEcC-C-CHHHHHHHHH
Q 009096 480 ---VPTFKIY-KNGEKLKEMIN-P-SHQFLEDSAN 508 (543)
Q Consensus 480 ---~Pt~~~~-~~g~~~~~~~g-~-~~~~~~~~~~ 508 (543)
+|+++++ ++|+++.+..| . ..+.+.++++
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~ 142 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALK 142 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHH
Confidence 9988888 59999999999 3 4444444444
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-10 Score=96.39 Aligned_cols=88 Identities=11% Similarity=0.049 Sum_probs=69.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCc-----------CcHHHH-------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVE-----------ESLAIA------------------- 472 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~-----------~~~~~~------------------- 472 (543)
.++++++.||++||++|+ ..|.|.++.+++++ +.++.|+++ .....+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 109 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG 109 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence 468999999999999999 99999999998854 889888763 111122
Q ss_pred -----------HHcCCCccc------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 473 -----------KSEGVRTVP------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 473 -----------~~~~v~~~P------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..|+|.++| +++++ ++|+++.++.|. +++++++.|++++..
T Consensus 110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 169 (171)
T 3cmi_A 110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKE 169 (171)
T ss_dssp TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 247899999 66655 799999999997 999999999987643
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.5e-10 Score=81.18 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=57.5
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|+++||++|+.+.+.|++. ++.|..+|+++++++.+ ++|+.++||+ +.+|+. +.|+++++|+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~~ 72 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINRL 72 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGGG
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHHH
Confidence 5679999999999999999874 57788899998766554 5899999998 458874 457888888888
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
|+++.
T Consensus 73 l~~~~ 77 (81)
T 1h75_A 73 HPAPH 77 (81)
T ss_dssp SCCC-
T ss_pred Hhccc
Confidence 77543
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=93.11 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=70.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------cHHHH----------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------SLAIA---------------------- 472 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~~~~~---------------------- 472 (543)
.+++++|.||++||++|+...|.|.++.+++++ +.++.|++|. ...+.
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 124 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 124 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence 468999999999999999999999999999864 8888887651 11221
Q ss_pred --------------HHcCCCccc---EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 473 --------------KSEGVRTVP---TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 473 --------------~~~~v~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
..+++.++| |++++ ++|+++.++.|. +++++++.|++++..
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~ 184 (187)
T 3dwv_A 125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS 184 (187)
T ss_dssp -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence 122455677 77777 699999999998 999999999998763
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=92.54 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+++++.|+..|||+|+.+.|.+.++.++++++.|...++
T Consensus 21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~ 100 (175)
T 3gyk_A 21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANE 100 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCH
Confidence 35688999999999999999999999999998877666552
Q ss_pred ------------------------------cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 466 ------------------------------EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 466 ------------------------------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.+..++.++||.++||+++ ||+ .+.|. +.+.+++.|++.+
T Consensus 101 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l 172 (175)
T 3gyk_A 101 TGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR 172 (175)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence 23456788999999999987 886 55698 9999999998753
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.8e-10 Score=95.15 Aligned_cols=88 Identities=19% Similarity=0.070 Sum_probs=76.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|+...|.|.++.++++ ++.++.|++|. ...+++.||
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence 3579999999 9999999999999999999885 68999998874 356889999
Q ss_pred CC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 477 VR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
|. ++|+++++ ++|+++.+..|. +.+++.+.|+++..
T Consensus 110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 157 (187)
T 1we0_A 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY 157 (187)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 99 99999999 699999998774 57889999987653
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=77.42 Aligned_cols=69 Identities=10% Similarity=0.198 Sum_probs=57.7
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHH---HcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAK---SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~---~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|+++||++|+.+.+.|+++ ++.|..+|++.++++.+ ++|+.++|++++ ||+. +.|+++++++++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHHH
Confidence 5679999999999999999875 57788899998876665 899999999873 8874 568899999888
Q ss_pred HH
Q 009096 507 AN 508 (543)
Q Consensus 507 ~~ 508 (543)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-09 Score=105.27 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=75.6
Q ss_pred HHHHhhHHHhcCCHHHHHHHHHHHHhc-----CCcc---hhhHHhHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---
Q 009096 51 VKRAGNEMYRKGNFVEALKLYDKAISM-----SPEN---AAYRSNRAATLTALGRLTEAVSDCEEAVRL-----DPG--- 114 (543)
Q Consensus 51 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~--- 114 (543)
....+..+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344556677899999999999999975 3343 578899999999999999999999999875 244
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 115 YNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
-...+.+||.+|..+|++++|+..|++++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678899999999999999998886554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-09 Score=76.46 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=70.0
Q ss_pred CCCChhHHhHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 308 DSYNSILYCNRAICWSKMGL---WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 308 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|.++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 68899999999999987766 7999999999999999999999999999999999999999999999999996543
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=94.57 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|+...|.+.++.++++ ++.|+.|++|. ...+++.|+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 123 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 123 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence 3578999999 9999999999999999998885 59999998874 346889999
Q ss_pred CC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 477 VR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 477 v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
|. ++|+++++ ++|+++.+..|. +.+++.+.|+++..
T Consensus 124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~ 170 (195)
T 2bmx_A 124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS 170 (195)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 99 99999888 499999998774 58999999998765
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=92.57 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=71.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC--------c---HHHHH-Hc---------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE--------S---LAIAK-SE--------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~--------~---~~~~~-~~--------------- 475 (543)
.++++++.||++||++|+...|.+.++.+++++ +.++.|++|. . ...++ ++
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE 110 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence 468999999999999999999999999998864 9999998752 1 22233 32
Q ss_pred --------------CC--Cccc---EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 476 --------------GV--RTVP---TFKIY-KNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 476 --------------~v--~~~P---t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|| .++| |++++ ++|+++.++.|. +++++.+.|++++..
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 169 (170)
T 2p5q_A 111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI 169 (170)
T ss_dssp TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence 45 6789 66666 699999999998 899999999987653
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=93.74 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=74.5
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|+...|.+.++.++++ ++.++.|++|. ...+++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence 4579999999 9999999999999999998884 58899998874 457899
Q ss_pred HcCCC-----cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. ++|+++++. +|+++.+..|. +.+++.+.|+++.
T Consensus 112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 160 (198)
T 1zof_A 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL 160 (198)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99999 999888885 99999998774 5788998888764
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=93.64 Aligned_cols=87 Identities=11% Similarity=-0.033 Sum_probs=69.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHHHHH-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAIAKS----------------- 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~~~~----------------- 474 (543)
.++++++.||++||++|+...|.|.++.+++++ +.++.|+++. . ...+++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~ 127 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT 127 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence 467999999999999999999999999999864 8999998763 1 122233
Q ss_pred -------cCCCccc-------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 475 -------EGVRTVP-------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 475 -------~~v~~~P-------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
|++.++| +++++ ++|+++.++.|. +++++.+.|++++
T Consensus 128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 2355678 55444 799999999998 9999999999865
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.9e-08 Score=92.16 Aligned_cols=130 Identities=13% Similarity=-0.026 Sum_probs=100.7
Q ss_pred HHHHHHhh---cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh---cC-----C---HHHHHHHHHH
Q 009096 238 KLMFNISE---LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS---SR-----R---YSEACSAYGE 303 (543)
Q Consensus 238 ~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~---~~-----~---~~~A~~~~~~ 303 (543)
+|..+... ....+|+.+|+++++++|++..++..+ +.++.. .+ . ...|+.. ..
T Consensus 202 ra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~l------------a~a~~~~~~~~~~~~~~~~~l~~a~~a-~~ 268 (372)
T 3ly7_A 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK------------ALVDIVRHSQHPLDEKQLAALNTEIDN-IV 268 (372)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCCCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhccCCCchhhHHHHHHHHHH-HH
Confidence 35555544 346899999999999999998887543 222211 11 1 1122221 12
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
++...|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34667999999999999999999999999999999999975 788899999999999999999999999999998764
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=88.17 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
+++++.|| ++||++|+...|.+.++.+++. ++.|+.|++|. ...+++.|||.
T Consensus 37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~ 116 (160)
T 1xvw_A 37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE 116 (160)
T ss_dssp CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence 38999998 9999999999999999999994 58999998864 56799999999
Q ss_pred --ccc--EEEEE-ECCeEEEEEcCC-C----HHHHHHHHHhc
Q 009096 479 --TVP--TFKIY-KNGEKLKEMINP-S----HQFLEDSANLA 510 (543)
Q Consensus 479 --~~P--t~~~~-~~g~~~~~~~g~-~----~~~~~~~~~~~ 510 (543)
++| +++++ ++|+++.+..|. + .+++.+.|+++
T Consensus 117 ~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 117 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred cCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 55555 699999998886 2 35555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=75.48 Aligned_cols=74 Identities=20% Similarity=0.108 Sum_probs=67.7
Q ss_pred cccCHHHHHHHhhHHHhcCC---HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Q 009096 44 VAVDAEEVKRAGNEMYRKGN---FVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR 117 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (543)
+|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68899999999999986665 799999999999999999999999999999999999999999999999998443
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-09 Score=90.17 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=68.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHH-HHHc---------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAI-AKSE--------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~-~~~~--------------- 475 (543)
.++++++.||++||++|+...|.+.++.+++++ +.++.|+++. . ... .+++
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS 109 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence 468999999999999999999999999998864 9999998753 1 112 1222
Q ss_pred --------------C-----CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 476 --------------G-----VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 476 --------------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
| |..+|+++++ ++|+++.++.|. +++++.+.|++++
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 4 3345776666 699999999998 8899999888754
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=94.45 Aligned_cols=80 Identities=10% Similarity=0.145 Sum_probs=63.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe----------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD---------------------------------------- 464 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d---------------------------------------- 464 (543)
..+++++.||.+|||+|+.+.|.++++.+. ++++..+.
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~ 162 (216)
T 1eej_A 85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS 162 (216)
T ss_dssp TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence 356889999999999999999999998764 45444332
Q ss_pred ----CcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 465 ----VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 465 ----~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
++++..+++++||.++||+ ++.||+ ++.|+ +.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 2345678999999999998 556885 45698 999999999864
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-09 Score=92.78 Aligned_cols=87 Identities=13% Similarity=-0.047 Sum_probs=67.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------cHHH---HH------HcC---------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------SLAI---AK------SEG--------- 476 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~~~~---~~------~~~--------- 476 (543)
.+++++|.||++||++|+...|.|.++.++|+ ++.++.|+++. ...+ ++ +++
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 125 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 125 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence 46799999999999999999999999999885 38999998751 1222 22 333
Q ss_pred --------------------------------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 477 --------------------------------------------VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 477 --------------------------------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|...||++++ ++|+++.++.|. +++++++.|+++
T Consensus 126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3334866665 699999999998 889999988875
Q ss_pred C
Q 009096 511 P 511 (543)
Q Consensus 511 ~ 511 (543)
+
T Consensus 206 l 206 (208)
T 2f8a_A 206 L 206 (208)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-07 Score=82.83 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHhccCCC--ChhHHhHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-ccCHH
Q 009096 293 RYSEACSAYGEGLKYDSY--NSILYCNRAICWSKM-----GLWENSIEDCNVALRIQPNY-TKALLRRAVSNEK-LGRWS 363 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~ 363 (543)
...+|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++..|..+.. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 367899999999999999 677999999999995 99999999999999999975 9999999999988 49999
Q ss_pred HHHHHHHHHHhcCCCC
Q 009096 364 EAVRDYEALRRELPGD 379 (543)
Q Consensus 364 ~A~~~~~~al~~~p~~ 379 (543)
+|.+++++++..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998874
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=90.68 Aligned_cols=86 Identities=19% Similarity=0.065 Sum_probs=67.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-------c----HHHHHH-----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-------S----LAIAKS----------------- 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-------~----~~~~~~----------------- 474 (543)
.++++++.||++||++|+...|.|.++.+++++ +.|+.|+++. . ...+++
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 125 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence 467999999999999999999999999998864 8999998752 1 111122
Q ss_pred ----c----------C-----CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 475 ----E----------G-----VRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 475 ----~----------~-----v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
| | |..+|+++++ ++|+++.++.|. +++++++.|+++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 4 3335987777 699999999998 889998888765
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-09 Score=82.49 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-------HHHHHHcCCCcccEEEEEECCeE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-------LAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-------~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
+.+.+... .++.|+++||++|+.+.|.|+++...+++ |..+|++.. ..+.+.+|+.++||+ |.+|+.
T Consensus 5 ~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ 78 (105)
T 1kte_A 5 VNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKEC 78 (105)
T ss_dssp HHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEE
T ss_pred HHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEE
Confidence 44555433 36779999999999999999998777766 445566554 358889999999997 458987
Q ss_pred EEEEc---CC-CHHHHHHHHHh
Q 009096 492 LKEMI---NP-SHQFLEDSANL 509 (543)
Q Consensus 492 ~~~~~---g~-~~~~~~~~~~~ 509 (543)
+.... +. ...+|.++|+.
T Consensus 79 i~g~~~~~~~~~~g~L~~~l~~ 100 (105)
T 1kte_A 79 IGGCTDLESMHKRGELLTRLQQ 100 (105)
T ss_dssp EESHHHHHHHHHHTHHHHHHHH
T ss_pred EeccHHHHHHHHCCcHHHHHHH
Confidence 65321 12 35666666654
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-09 Score=92.75 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=64.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+++++.|+.+|||+|+.+.|.++++.+. ++++..+..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~ 162 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK 162 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence 356889999999999999999999998653 455443321
Q ss_pred -----cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 466 -----EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 466 -----~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+++..+++++||+++||+++ .||+ ++.|+ +.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~ 209 (211)
T 1t3b_A 163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET 209 (211)
T ss_dssp CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence 23467889999999999998 7897 56798 999999999875
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.82 E-value=7e-09 Score=89.53 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.+++ .++.|+.|++|. ...+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 109 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR 109 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence 4578999999 999999999999999999888 568899888763 246899
Q ss_pred HcCCC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 158 (192)
T 2h01_A 110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ 158 (192)
T ss_dssp HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 99999 89999999 599999998774 4788888888654
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-09 Score=88.24 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=69.8
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------cHHHHHHcCCCcc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------SLAIAKSEGVRTV- 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~~~~~~~~~v~~~- 480 (543)
.++++++.||++| |++|+...|.|.++.++ +++.|+.|++|. ...+++.|||..+
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 121 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD 121 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcccc
Confidence 3578999999998 99999999999999988 889999998872 2468899999887
Q ss_pred --------cEEEEE-ECCeEEEEEcC--C-CHHHHHHHHHhcC
Q 009096 481 --------PTFKIY-KNGEKLKEMIN--P-SHQFLEDSANLAP 511 (543)
Q Consensus 481 --------Pt~~~~-~~g~~~~~~~g--~-~~~~~~~~~~~~~ 511 (543)
|+++++ ++|+++.+..| . +.++++++|+.+.
T Consensus 122 ~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 122 GPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp STTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred cccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHH
Confidence 876666 59999999874 3 4556777776654
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=8e-09 Score=90.96 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=74.1
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ++||++|+...|.|.++.+++ .++.|+.|++|. ...+++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 589999999 999999999999999999988 569999888763 3468999
Q ss_pred cCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 475 EGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9999 99999999 599999987764 5688988888765
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-09 Score=90.04 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=74.1
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.|+.|++|. ...+++
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 114 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK 114 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence 3579999999 999999999999999999988 469999998864 346899
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. ++|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 99999 99998888 599999987764 4588988888764
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.8e-09 Score=88.60 Aligned_cols=86 Identities=17% Similarity=0.042 Sum_probs=67.0
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------cHHHHHHc----------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------SLAIAKSE---------------- 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------~~~~~~~~---------------- 475 (543)
.++++++.||++||++|+...|.+.++.++++ ++.++.|++|. ....++++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 127 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 127 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence 46799999999999999999999999999885 48999998752 12233333
Q ss_pred ---------------CCCc-----ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 476 ---------------GVRT-----VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 476 ---------------~v~~-----~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|+.+ +|+++++ ++|+++.++.|. +++++.+.|+++
T Consensus 128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 3222 4777777 699999999998 889998888764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-08 Score=74.12 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=72.0
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcC-------CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMS-------PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRA 118 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (543)
.+++..+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.+++++|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 468889999999999999999999999999863 3457889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 009096 119 HQRLAS 124 (543)
Q Consensus 119 ~~~la~ 124 (543)
..+++.
T Consensus 83 ~~n~~~ 88 (104)
T 2v5f_A 83 NGNLKY 88 (104)
T ss_dssp HHHHHH
T ss_pred HhhHHH
Confidence 888873
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-09 Score=83.87 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=62.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---H----HHHHHcCCCcccEEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---L----AIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~----~~~~~~~v~~~Pt~~~~~ 487 (543)
..+.+.+.+... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++.+.+|+.++|+++ .
T Consensus 16 ~~~~~~~~i~~~-~-vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i 86 (130)
T 2cq9_A 16 PVNQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V 86 (130)
T ss_dssp HHHHHHHHHHHS-S-EEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--E
T ss_pred HHHHHHHHHcCC-c-EEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--E
Confidence 334555555443 3 34499999999999999999874 44556677654 3 378899999999984 5
Q ss_pred CCeEEEE---EcCC-CHHHHHHHHHhcC
Q 009096 488 NGEKLKE---MINP-SHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~---~~g~-~~~~~~~~~~~~~ 511 (543)
||+.+.. +.+. ...+|.++|+..-
T Consensus 87 ~G~~igg~~~l~~~~~~~~L~~~L~~~g 114 (130)
T 2cq9_A 87 NGTFIGGATDTHRLHKEGKLLPLVHQCY 114 (130)
T ss_dssp TTEEEEEHHHHHHHHHHTSSHHHHHHHS
T ss_pred CCEEEcChHHHHHHHHcCcHHHHHHHcC
Confidence 9987764 2334 5667888888753
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-08 Score=78.87 Aligned_cols=120 Identities=10% Similarity=-0.050 Sum_probs=90.1
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
++++|+.+|+++.+..... .. +|.+|...+..++|+.+|+++.+. .++.+. +++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--------lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~------------~~Lg~ 65 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--------LSLVSNSQINKQKLFQYLSKACEL--NSGNGC------------RFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--------HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHH------------HHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--------HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHH------------HHHHH
Confidence 4555555555555444222 11 277777778888899999998876 445443 45799
Q ss_pred HHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 287 NLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 287 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+..+++.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 9988 89999999999999886 678999999999999 89999999999999987 45666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-08 Score=94.79 Aligned_cols=105 Identities=9% Similarity=-0.068 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKY-----DSYN---SILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT--- 346 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--- 346 (543)
..+......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444455678999999999999975 4554 567899999999999999999999999975 46665
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCChHHHHHHH
Q 009096 347 KALLRRAVSNEKLGRWSEAVRDYEALRRE-----LPGDNEVAESLH 387 (543)
Q Consensus 347 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~ 387 (543)
..+.++|.+|..+|++++|...|++|+++ .|++|.+.....
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 56899999999999999999999999985 688888875443
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-09 Score=89.42 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=66.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC-----------cHHHHHH-cCCC------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE-----------SLAIAKS-EGVR------------ 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~-----------~~~~~~~-~~v~------------ 478 (543)
.+++++|.||++||++|+...|.+.++.++|++ +.++.|.++. ....+++ +++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 116 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS 116 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence 467999999999999999999999999999864 8999887653 1334555 5432
Q ss_pred --------------cccE-----EEEEECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 479 --------------TVPT-----FKIYKNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 479 --------------~~Pt-----~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
++|+ +++.++|+++.++.|. +++++++.|++++
T Consensus 117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 169 (180)
T 3kij_A 117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169 (180)
T ss_dssp TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 2564 5555799999999997 7777777666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=72.65 Aligned_cols=82 Identities=11% Similarity=-0.079 Sum_probs=57.4
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQ-------PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
+.-++.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++.++|++++|+.+++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455667777777777777777777776642 234577778888888888888888888888888888877766
Q ss_pred HHHHHHHHH
Q 009096 385 SLHNAQVAL 393 (543)
Q Consensus 385 ~l~~~~~~l 393 (543)
++......+
T Consensus 85 n~~~~~~~~ 93 (104)
T 2v5f_A 85 NLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 665444433
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=88.77 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.|+.|++|. ...+++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 130 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK 130 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence 4578999999 999999999999999999988 568888887764 346899
Q ss_pred HcCCC-----cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR-----TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~-----~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++ ++|+++.+..|. +.+++.+.|+.+.
T Consensus 131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 99999 89987777 599999987664 4889998888754
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-09 Score=83.25 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=60.8
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEECC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~g 489 (543)
....+.+. ...++.|+++||++|+.+.+.|+++...++. |..+|++..+ ++.+.+|+.++|+++ .||
T Consensus 10 ~~~~~~i~--~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g 83 (114)
T 2hze_A 10 EFVQQRLA--NNKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGK 83 (114)
T ss_dssp HHHHTTCC--TTCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETT
T ss_pred HHHHHHhc--cCCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 33444443 3457779999999999999999876544333 7778887663 788999999999874 489
Q ss_pred eEEEEEc---CC-CHHHHHHHHHh
Q 009096 490 EKLKEMI---NP-SHQFLEDSANL 509 (543)
Q Consensus 490 ~~~~~~~---g~-~~~~~~~~~~~ 509 (543)
+.+.... +. +..+|+++|+.
T Consensus 84 ~~igg~~~~~~~~~~~~L~~~L~~ 107 (114)
T 2hze_A 84 TSIGGYSDLLEIDNMDALGDILSS 107 (114)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHH
T ss_pred EEEeCcHHHHHHHHCChHHHHHHH
Confidence 8765332 12 34567777764
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-08 Score=83.28 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCCceeeeeeCCC-CccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFKEAS-SEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.||++| |++|+...|.+.++.++++++.|+.|++|. ...+++.|||..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~ 122 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIK 122 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBT
T ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccc
Confidence 3578999999999 999999999999999988778888888763 346889999987
Q ss_pred -----ccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHhc
Q 009096 480 -----VPTFKIY-KNGEKLKEMINP------SHQFLEDSANLA 510 (543)
Q Consensus 480 -----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 510 (543)
.|+++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 123 ~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 123 ELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred cCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4987777 599999998763 347787777764
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=88.12 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCCceeeeeeCCCCcc-ccchhHhHHHHHhhC-----CCeEEEEEeCcC----------------------------cHH
Q 009096 425 SPGVSLVHFKEASSEK-CEEISPFVNLLCVRY-----PYVHFFKVDVEE----------------------------SLA 470 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~-c~~~~p~l~~l~~~~-----~~~~~~~~d~~~----------------------------~~~ 470 (543)
.++++++.||++||++ |....|.|.++.+++ .++.++.|++|. ...
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 119 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence 4679999999999998 999999999876655 268888888773 135
Q ss_pred HHHHcCCC-ccc---------------EEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 471 IAKSEGVR-TVP---------------TFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 471 ~~~~~~v~-~~P---------------t~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++.|||. +.| +++++ ++|+++.++.|. +.+++.+.|++.+
T Consensus 120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l 178 (200)
T 2b7k_A 120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 178 (200)
T ss_dssp HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899997 454 44444 699999999886 7766666666554
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=87.86 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=66.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC----------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV---------------------------------------- 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~---------------------------------------- 465 (543)
.+.+++.|+.+|||+|+.+.|.+.++.++ .+++|..+++
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~ 175 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA 175 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence 45689999999999999999999988776 4576665443
Q ss_pred ----------cCcHHHHHHcCCCcccEEEEEE-CCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 466 ----------EESLAIAKSEGVRTVPTFKIYK-NGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 466 ----------~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.+..+++++||.++||+++.. +|+. .++.|+ +.++|.++|++..
T Consensus 176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~ 232 (241)
T 1v58_A 176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKL 232 (241)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC--
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHH
Confidence 1234578999999999999987 5864 678898 9999999998754
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-08 Score=82.98 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhCC----CeEEEEEeCcC---c-------------------------HHH
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRYP----YVHFFKVDVEE---S-------------------------LAI 471 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~~----~~~~~~~d~~~---~-------------------------~~~ 471 (543)
.++++++.||++||+ +|....|.+.++.++++ ++.|+.|++|. . ..+
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 111 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 111 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence 467899999999999 99999999999988773 38999998762 1 122
Q ss_pred HHH----------------cCCCcccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcCC
Q 009096 472 AKS----------------EGVRTVPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAPS 512 (543)
Q Consensus 472 ~~~----------------~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~~ 512 (543)
.+. +++..+|+++++ ++|+++.++.|. +.+++.+.|++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 222 246778986666 699999999997 37999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=91.41 Aligned_cols=106 Identities=7% Similarity=0.008 Sum_probs=89.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcc-----CCCC---hhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---H
Q 009096 284 RGNNLFSSRRYSEACSAYGEGLKY-----DSYN---SILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYT---K 347 (543)
Q Consensus 284 ~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~ 347 (543)
....+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566889999999999999975 3444 578999999999999999999999999975 45665 5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCChHHHHHHHHH
Q 009096 348 ALLRRAVSNEKLGRWSEAVRDYEALRRE-----LPGDNEVAESLHNA 389 (543)
Q Consensus 348 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~ 389 (543)
.++++|.+|..+|++++|...|++|+++ .|++|.+...+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 6899999999999999999999999985 78898887665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-07 Score=74.58 Aligned_cols=98 Identities=9% Similarity=-0.028 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CChhHHhHHHHH
Q 009096 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSR---RYSEACSAYGEGLKYD-S-YNSILYCNRAIC 321 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 321 (543)
....+.+.|.+.+..++.+.++. ++.|.++.+.+ ++++++.+++.+++.+ | ++.+.++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~------------F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQ------------FEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHH------------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 34566777888888788777764 45799999988 7789999999999998 7 568999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 322 WSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 322 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
++++|+|++|+++++++++++|+|..+...+-.+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998876655443
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=84.78 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc-------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE------------------------------------- 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~------------------------------------- 466 (543)
..+++++.|+..|||+|+.+.|.+.++.+++++ +.|..+.+.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~ 103 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK 103 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 456889999999999999999999999999986 666655431
Q ss_pred ------------------------------------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------------------------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------------------------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
.+..++.++||.++||+++ ||+.+....|. +.+.+.+.|+.
T Consensus 104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~ 181 (192)
T 3h93_A 104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY 181 (192)
T ss_dssp CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence 0123567889999999987 99877666687 99999998887
Q ss_pred cC
Q 009096 510 AP 511 (543)
Q Consensus 510 ~~ 511 (543)
.+
T Consensus 182 l~ 183 (192)
T 3h93_A 182 LI 183 (192)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=98.62 E-value=8e-08 Score=84.70 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=69.8
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.+++++|.||+ +||++|....|.|.++.++|. ++.|+.|++|. ...+++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 46799999996 999999999999999999984 58999898874 236889
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
.|+|. .+|+++++ ++|+++.+..|. ..+++.+.|+.
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 99999 89998888 599999988774 34566666664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.6e-07 Score=79.91 Aligned_cols=87 Identities=20% Similarity=0.024 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHhhcCCCc--HHHHHHHHhHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhccCCCC-hhHHhHH
Q 009096 247 RFENAVSSAEKAGLLDYSN--VEIASVLTNVKMVVRARTRGNNLFSS-----RRYSEACSAYGEGLKYDSYN-SILYCNR 318 (543)
Q Consensus 247 ~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~l 318 (543)
...+|...++++++++|+. ..++.. +|..|... |+.++|.++|+++++++|+. ..+++.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~------------LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNV------------LTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHH------------HHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHH------------HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 4578999999999999994 445533 68888885 99999999999999999975 9999999
Q ss_pred HHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 009096 319 AICWSK-MGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 319 a~~~~~-~g~~~~A~~~~~~al~~~p~~ 345 (543)
|..+.. .|++++|...+++++..+|..
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999988 599999999999999988763
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=71.71 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=55.3
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----Cc----HHHHHHcCCCcccEEEEEECCeEEEEEcCCC
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----ES----LAIAKSEGVRTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
.++.|+++||++|+.+.+.|+++. +.+-.+|++ +. +++.+.+++.++|++++ ||+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 366789999999999999999874 334455655 33 66778899999999887 8864 45889
Q ss_pred HHHHHHHHH
Q 009096 500 HQFLEDSAN 508 (543)
Q Consensus 500 ~~~~~~~~~ 508 (543)
+++|+++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999986
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-07 Score=88.25 Aligned_cols=102 Identities=8% Similarity=-0.072 Sum_probs=85.4
Q ss_pred HHHHHhhcChHHHHHHHHHHhh-----cCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------
Q 009096 239 LMFNISELRFENAVSSAEKAGL-----LDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------ 307 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------ 307 (543)
.......|++++|+..++++++ +.|+++.....+++ +|.+|..+|+|++|+.++++++++
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~n---------La~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQ---------AMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHH---------HHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3344457899999999999985 57888888766654 899999999999999999999975
Q ss_pred --CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHH
Q 009096 308 --DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYTKAL 349 (543)
Q Consensus 308 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 349 (543)
+|+-+..+++||.+|..+|++++|+..|++|+++ .|+++...
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444678999999999999999999999999975 57877543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6e-07 Score=87.34 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhc-----CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLL-----DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY-- 307 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-- 307 (543)
......-+...|++++|+..+++++.+ .|+++.....+++ +|.+|..+|+|++|+.+++++++.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~---------L~~~y~~~g~~~eA~~~~~~~L~i~~ 360 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDC---------AMDACINLGLLEEALFYGTRTMEPYR 360 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHH---------HHHHHHhhccHHHHHHHHHHHHHhHH
Confidence 333345567889999999999999854 5788877666554 899999999999999999999975
Q ss_pred ------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHH
Q 009096 308 ------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRI-----QPNYTK---ALLRRAVSNEK 358 (543)
Q Consensus 308 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~ 358 (543)
+|+-...++++|.+|..+|++++|+.+|++|+++ .|+++. ++.+++.+...
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999999999975 677764 34555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=88.37 Aligned_cols=141 Identities=11% Similarity=-0.005 Sum_probs=78.3
Q ss_pred HHhcCCcchhhH--HhHHHHHHHcCC---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCH-----------HHHHH
Q 009096 74 AISMSPENAAYR--SNRAATLTALGR---LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQV-----------ENARH 137 (543)
Q Consensus 74 al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------~~A~~ 137 (543)
+....|.+..+| +..|..++..++ ..+|+.+|+++++++|+++.++..++.+|.....+ ..+..
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334445554433 344555554433 35666666666666666666666666655422111 11222
Q ss_pred HhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhh
Q 009096 138 HLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216 (543)
Q Consensus 138 ~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 216 (543)
... ++. .+... ..+...+..+...|++++|+..+++++.++|. ...+..+|.++...|++++|++.|.
T Consensus 266 a~~-a~~~~~~~a--------~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 266 NIV-TLPELNNLS--------IIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHH-TCGGGTTCH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-hcccCCcCH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 111 111 11111 12333344444557777777777777777753 4566677888888888888888888
Q ss_pred cCCCCCCCC
Q 009096 217 NMPKFEHYS 225 (543)
Q Consensus 217 ~~~~~~~~~ 225 (543)
+++.++|..
T Consensus 335 ~AlrL~P~~ 343 (372)
T 3ly7_A 335 TAFNLRPGA 343 (372)
T ss_dssp HHHHHSCSH
T ss_pred HHHhcCCCc
Confidence 888887765
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=87.75 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=71.1
Q ss_pred CCC-ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHH
Q 009096 425 SPG-VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKS 474 (543)
Q Consensus 425 ~~~-~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~ 474 (543)
.++ .+++.||++||+.|....|.|.++.++|. ++.++.|++|. ...+++.
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ 111 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR 111 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHH
T ss_pred CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHH
Confidence 345 45668999999999999999999998885 68999998864 2468899
Q ss_pred cCCC-------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 475 EGVR-------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~-------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
|||. ++|+++++. +|+++....|. +.+++.+.|+.+.
T Consensus 112 ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq 161 (249)
T 3a2v_A 112 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK 161 (249)
T ss_dssp HTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred hCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence 9998 899887774 99999887654 6899999998753
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=78.92 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=67.7
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCc--
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~-- 479 (543)
++++++.||+ +||++|....|.+.++.++++ ++.++.|.+|. ...+++.|||..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 5689999998 999999999999999998884 48888888763 246888999987
Q ss_pred ----------ccEEEEEE-CCeEEEEEcCC-C---HHHHHHHHHhc
Q 009096 480 ----------VPTFKIYK-NGEKLKEMINP-S---HQFLEDSANLA 510 (543)
Q Consensus 480 ----------~Pt~~~~~-~g~~~~~~~g~-~---~~~~~~~~~~~ 510 (543)
+|+++++. +|+++..+.|. . .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 99988884 99999888665 3 35555555543
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-08 Score=82.49 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=37.4
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~ 466 (543)
..+++++.|+.+|||+|+.+.|.+.++.+++++ +.|..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 356899999999999999999999999999985 888888774
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=78.00 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=57.6
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC---------------------cHHHHHHcCCCccc--
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE---------------------SLAIAKSEGVRTVP-- 481 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~---------------------~~~~~~~~~v~~~P-- 481 (543)
+++++.|| ++||++|....|.|.++.+++.+ -.++.|.+|. ...+++.|||...|
T Consensus 36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 36888887 89999999999999999887742 1666666542 34688999999999
Q ss_pred -----EEEEEECCeEEEEEcCC
Q 009096 482 -----TFKIYKNGEKLKEMINP 498 (543)
Q Consensus 482 -----t~~~~~~g~~~~~~~g~ 498 (543)
|+++ ++|+++.+..|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 6777 999999999887
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-08 Score=81.27 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=58.9
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---H----HHHHHcCCCcccEEEEEECC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---L----AIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~----~~~~~~~v~~~Pt~~~~~~g 489 (543)
..+.+.+... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++++.+|+.++|+++ .||
T Consensus 40 ~~~~~~i~~~-~-Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G 110 (146)
T 2ht9_A 40 NQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 110 (146)
T ss_dssp HHHHHHHHHC-S-EEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred HHHHHHhcCC-C-EEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECC
Confidence 4455555433 3 34499999999999999999874 34556666644 3 378899999999984 599
Q ss_pred eEEEEE---cCC-CHHHHHHHHHhc
Q 009096 490 EKLKEM---INP-SHQFLEDSANLA 510 (543)
Q Consensus 490 ~~~~~~---~g~-~~~~~~~~~~~~ 510 (543)
+.+... .+. ...+|.++|+..
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~ 135 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQC 135 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHc
Confidence 876532 223 455677777764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.54 E-value=9.3e-07 Score=67.93 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 009096 293 RYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWEN---SIEDCNVALRIQ-P-NYTKALLRRAVSNEKLGRWSEAVR 367 (543)
Q Consensus 293 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 367 (543)
....+.+.|.+.+..++.+..+.+++|+++.+..+... ++..++..+..+ | ..-+.+|.+|..++++|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45566777787777788889999999999999888766 999999999877 5 456899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 368 DYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 368 ~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
+++.+++..|+|.++......+...+.
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999877766665554
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-07 Score=79.58 Aligned_cols=87 Identities=8% Similarity=-0.115 Sum_probs=66.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------c---HHHHH------HcCCC-------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------S---LAIAK------SEGVR------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~---~~~~~------~~~v~------- 478 (543)
.++++++.||++||++|+ ..|.|.++.++|. ++.++.|.++. . ...++ ++++.
T Consensus 55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~ 133 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG 133 (215)
T ss_dssp TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence 467999999999999999 7899999999885 48888887642 1 22344 55431
Q ss_pred -------------------------c--------------c---cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 479 -------------------------T--------------V---PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 479 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+ + ||.+++ ++|+++.++.|. +++++++.|++++.
T Consensus 134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll~ 211 (215)
T 2i3y_A 134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 211 (215)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1 1 565555 699999999987 89999999988764
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=3e-07 Score=67.38 Aligned_cols=75 Identities=25% Similarity=0.348 Sum_probs=58.4
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc-----CCCcccEEEEEECCeEEEEEcCCCHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE-----GVRTVPTFKIYKNGEKLKEMINPSHQF 502 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 502 (543)
..++.|+.+|||.|...+..|++ .++.|..+|++.+++..+.+ |.+++|++++ .||+.+ +|++.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~-----~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~l---~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTA-----NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGSTL---TNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCEE---ESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHh-----cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEEE---eCCCHHH
Confidence 34677899999999999998877 36778889998876544332 7899998754 678653 4889999
Q ss_pred HHHHHHhcC
Q 009096 503 LEDSANLAP 511 (543)
Q Consensus 503 ~~~~~~~~~ 511 (543)
|++.|.+..
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998754
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=76.69 Aligned_cols=91 Identities=4% Similarity=-0.063 Sum_probs=70.8
Q ss_pred CCceeeeeeCCCCc-cccchhHhHHHHHhhC----CCeEEEEEeCcC-------------------------------cH
Q 009096 426 PGVSLVHFKEASSE-KCEEISPFVNLLCVRY----PYVHFFKVDVEE-------------------------------SL 469 (543)
Q Consensus 426 ~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~----~~~~~~~~d~~~-------------------------------~~ 469 (543)
++++++.||++||+ .|....|.+.++.+++ .++.++.|.+|. ..
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 68999999999997 6999999999998887 347777776541 13
Q ss_pred HHHHHcCC---------CcccEEEEE-ECCeEEEEEcCC--CHHHHHHHHHhcCCCCCC
Q 009096 470 AIAKSEGV---------RTVPTFKIY-KNGEKLKEMINP--SHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 470 ~~~~~~~v---------~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 516 (543)
.+++.||+ ...|+++++ ++|+++.++.|. +++++.+.|++...++..
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~~ 166 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEGHH 166 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCSCT
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhccccc
Confidence 46666664 345777777 599999988886 899999999988766543
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.7e-07 Score=80.09 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.++| .++.++.|.+|. ...+++
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 134 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK 134 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence 4578999999 999999999999999998887 467777776653 125778
Q ss_pred HcCC-----CcccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGV-----RTVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v-----~~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.||| ..+|+++++. +|+++.+..|. +.+++.+.|+.+.
T Consensus 135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~ 183 (221)
T 2c0d_A 135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII 183 (221)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 8898 4789988885 99999987662 5788888888754
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-07 Score=75.94 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=59.6
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~-- 478 (543)
.++++++.|| ++||++|....|.+.++.+++. ++.++.|..|. ...++++|||.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~ 108 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE 108 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence 3678899998 8999999999999988888874 47787777664 23578888874
Q ss_pred ---------cccEEEEE-ECCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 479 ---------TVPTFKIY-KNGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 479 ---------~~Pt~~~~-~~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
..|+++++ ++|+++.+..| . +.+++.+.|+.+
T Consensus 109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 45766666 59999887654 2 567888888754
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-07 Score=67.48 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=52.1
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----HHHH----HHcCCCcccEEEEEECC-eEEEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----LAIA----KSEGVRTVPTFKIYKNG-EKLKEM 495 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----~~~~----~~~~v~~~Pt~~~~~~g-~~~~~~ 495 (543)
....++.|+++|||+|+.+.+.|+++. +.+-.+|++.. .++. +..|+.++|++++ +| +. +
T Consensus 20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~~---i 89 (103)
T 3nzn_A 20 DRGKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEKA---I 89 (103)
T ss_dssp CCSCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTEE---E
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCEE---E
Confidence 345577799999999999999999874 34455565531 2232 3468999999876 44 43 4
Q ss_pred cCCCHHHHHHHHH
Q 009096 496 INPSHQFLEDSAN 508 (543)
Q Consensus 496 ~g~~~~~~~~~~~ 508 (543)
.|+++++|+++|+
T Consensus 90 gg~~~~~l~~~L~ 102 (103)
T 3nzn_A 90 VGFKEKEIRESLG 102 (103)
T ss_dssp ESCCHHHHHHHTT
T ss_pred EcCCHHHHHHHhC
Confidence 4789999998874
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-07 Score=77.43 Aligned_cols=87 Identities=7% Similarity=-0.132 Sum_probs=65.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--------c---HHHHH------HcCCC-------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--------S---LAIAK------SEGVR------- 478 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--------~---~~~~~------~~~v~------- 478 (543)
.+++++|.||++||++| ...|.|.++.++|. ++.++.|.++. . ...++ ++++.
T Consensus 37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 115 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG 115 (207)
T ss_dssp TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence 46799999999999999 67899999999885 48888887541 1 22334 45431
Q ss_pred -------------------------c--------------c---cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 479 -------------------------T--------------V---PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 479 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+ + ||.+++ ++|+++.++.|. +++++++.|++++.
T Consensus 116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll~ 193 (207)
T 2r37_A 116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMR 193 (207)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 1 565555 699999999987 89999999887653
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=73.99 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=62.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
..+.+++.|.-++||.|+.+.+.+++ ++++++...+.
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~----l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~ 88 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEK----MTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG 88 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTT----CCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhh----cCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence 45788999999999999999998764 35555443321
Q ss_pred -------cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 466 -------EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 466 -------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
+++.++++++||+++||+++ .||+ ++.|+ +.++|.+.|++...+
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~~ 140 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQE 140 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHHh
Confidence 12356889999999999998 7887 46698 999999999987653
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.8e-07 Score=66.66 Aligned_cols=57 Identities=11% Similarity=0.255 Sum_probs=47.4
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc--CcHHHHHHc-CCCcccEEEEEECCeEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--ESLAIAKSE-GVRTVPTFKIYKNGEKL 492 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--~~~~~~~~~-~v~~~Pt~~~~~~g~~~ 492 (543)
.++.|+++||++|+.+.+.|++. ++.|..+|++ ..+++.+.+ |+.++|+++ .||+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~-----~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK-----GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH-----TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 46789999999999999999886 3667888888 567788889 999999984 488754
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-07 Score=75.22 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=64.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCCc--
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~~-- 479 (543)
++++++.|| +.||++|....|.|.++.+++. ++.++.|.+|. ...+++.|||..
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~ 130 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK 130 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence 567888888 9999999999999999998884 48888887764 236888899864
Q ss_pred ----------ccEEEEE-ECCeEEEEEcCC-C---HHHHHHHHHh
Q 009096 480 ----------VPTFKIY-KNGEKLKEMINP-S---HQFLEDSANL 509 (543)
Q Consensus 480 ----------~Pt~~~~-~~g~~~~~~~g~-~---~~~~~~~~~~ 509 (543)
.|+++++ ++|+++..+.+. . .+++.+.|++
T Consensus 131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5877777 499999888665 3 4455555554
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=66.35 Aligned_cols=93 Identities=10% Similarity=0.138 Sum_probs=77.3
Q ss_pred EEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 411 EEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
..+.+.+.+...+....+++|-|+.+||++| .+.|.++++.++++.|+.++ +.+++..+++. .|++++|+++.
T Consensus 24 ~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~-~~~vvlfkkfd 96 (124)
T 2l4c_A 24 TWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGIST---DSEVLTHYNIT-GNTICLFRLVD 96 (124)
T ss_dssp EECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEEC---CHHHHHHTTCC-SSCEEEEETTT
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEEC---hHHHHHHcCCC-CCeEEEEEcCC
Confidence 3466777888888888999999999999999 67899999999889998776 47799999998 89999999874
Q ss_pred -EEEEEcC----C-CHHHHHHHHHhc
Q 009096 491 -KLKEMIN----P-SHQFLEDSANLA 510 (543)
Q Consensus 491 -~~~~~~g----~-~~~~~~~~~~~~ 510 (543)
....+.| . +.+.|.+||+..
T Consensus 97 e~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 97 NEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCceeecCcccCCCCHHHHHHHHHHh
Confidence 3445565 4 999999999864
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-07 Score=72.01 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=52.5
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccch-hHhHHHHHhhCCCeEEEEEeCcCcH-------HHHHHcCCCcccEEEEEEC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYPYVHFFKVDVEESL-------AIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~~~~~~~~d~~~~~-------~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+.+.+... .++.|+++||++|+.+ .+.|+++.. +++.|..+|++..+ ++.+.+|+.++|++ |.|
T Consensus 16 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~ 89 (118)
T 3c1r_A 16 KHVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YIN 89 (118)
T ss_dssp HHHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 4444444333 3666999999999999 888876541 34778888887653 58889999999987 669
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 90 g~~ig 94 (118)
T 3c1r_A 90 GKHIG 94 (118)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 98764
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-06 Score=72.51 Aligned_cols=84 Identities=8% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.|| +.||++|....|.|.++.+++.++.++.|.+|. ...+++.|||..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 121 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQ 121 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEEC
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceec
Confidence 3578999999 799999999999999999888667777776542 245788888864
Q ss_pred --------ccEEEEEE-CCeEEEEEcCC---CHHHHHHHHH
Q 009096 480 --------VPTFKIYK-NGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 480 --------~Pt~~~~~-~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.|+++++. +|+++.+..|. ....+++.++
T Consensus 122 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 122 TGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred ccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 49888885 99999998752 3444555554
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=71.43 Aligned_cols=85 Identities=5% Similarity=-0.030 Sum_probs=66.0
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.++++++.||+ .||++|....|.+.++.+++.++.++.|..|. ...+++.|||.
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 120 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN 120 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCT
T ss_pred CCCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCccc
Confidence 35789999995 99999999999999999888668777776552 23577788887
Q ss_pred --c--ccEEEEEE-CCeEEEEEcCC------CHHHHHHHHHh
Q 009096 479 --T--VPTFKIYK-NGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 479 --~--~Pt~~~~~-~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
+ .|+++++. +|+++.+..|. +.+++.+.|++
T Consensus 121 ~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 121 EWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred cCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 38888885 99999998763 33677777764
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.9e-07 Score=67.46 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=50.7
Q ss_pred hhhhhccCCCCceeeeeeC-----CCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEE
Q 009096 417 EKFKAAISSPGVSLVHFKE-----ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~-----~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~ 487 (543)
+.+.+.+..+ ++++ |+. +||++|+.+.+.|+++ ++.|..+|++.++. +...+|+.++|++ |.
T Consensus 8 ~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i 78 (105)
T 2yan_A 8 ERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--YV 78 (105)
T ss_dssp HHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred HHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence 3445555544 4444 666 9999999999999887 36788899987765 4556799999998 46
Q ss_pred CCeEEE
Q 009096 488 NGEKLK 493 (543)
Q Consensus 488 ~g~~~~ 493 (543)
||+.+.
T Consensus 79 ~g~~ig 84 (105)
T 2yan_A 79 KGELVG 84 (105)
T ss_dssp TTEEEE
T ss_pred CCEEEe
Confidence 898654
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=65.44 Aligned_cols=62 Identities=10% Similarity=0.213 Sum_probs=48.6
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc-----CCCcccEEEEEECCeEEE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE-----GVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~ 493 (543)
.....++.|+.+||+.|+.+.++|+++ ++.|..+|++..++..+.+ |+.++|++ |.||+.+.
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~-----~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKRK-----GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHHH-----TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHHC-----CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 345567779999999999999999986 4667778888876655444 99999987 56897654
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=76.41 Aligned_cols=87 Identities=14% Similarity=0.011 Sum_probs=69.4
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||++|....|.|.++.+++ .++.++.|.+|. ...+++
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 126 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 126 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence 3578999999 999999999999999998887 458887776652 135778
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|||. .+|+++++. +|+++.+..|. +.+++.+.|+.+.
T Consensus 127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~ 176 (211)
T 2pn8_A 127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ 176 (211)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 88984 699888885 99999987653 5688888888754
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=73.59 Aligned_cols=87 Identities=10% Similarity=-0.075 Sum_probs=68.9
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
++++++.||+ +||++|....|.|.++.+++. ++.++.|.+|. ...+++.|||
T Consensus 30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv 109 (186)
T 1n8j_A 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 109 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence 5789999995 999999999999999988774 57777776653 2346778888
Q ss_pred C------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhcCC
Q 009096 478 R------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLAPS 512 (543)
Q Consensus 478 ~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~~~ 512 (543)
. .+|+++++. +|+++.+..|. +.+++.+.|+.+..
T Consensus 110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~~ 156 (186)
T 1n8j_A 110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQY 156 (186)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHH
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 6 379888885 99999987763 47888888887653
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-06 Score=71.48 Aligned_cols=84 Identities=12% Similarity=0.051 Sum_probs=65.6
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----------------------HHHHHHcCCCc--
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----------------------LAIAKSEGVRT-- 479 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----------------------~~~~~~~~v~~-- 479 (543)
++++++.|| ++||++|....|.+.++.+++.++.++.|.+|.. ..+ +.|||..
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~ 125 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGE 125 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCS
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecc
Confidence 568999999 7999999999999999998886688877766531 235 6677652
Q ss_pred -------ccEEEEEE-CCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 480 -------VPTFKIYK-NGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 480 -------~Pt~~~~~-~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
+|+++++. +|+++.+..| . +.+++.+.|+++
T Consensus 126 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 126 GALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred cccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 68888885 9999998864 2 567888888764
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-07 Score=74.87 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=64.9
Q ss_pred CCCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------cHHHHHHcCCC-
Q 009096 424 SSPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------SLAIAKSEGVR- 478 (543)
Q Consensus 424 ~~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------~~~~~~~~~v~- 478 (543)
..++++++.|| ++||++|....|.|.++.+++. ++.++.|..|. ...+++.|||.
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~ 110 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 110 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence 35677888887 9999999999999988888874 47888787663 24688889984
Q ss_pred ---------cccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHhc
Q 009096 479 ---------TVPTFKIY-KNGEKLKEMINP------SHQFLEDSANLA 510 (543)
Q Consensus 479 ---------~~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~ 510 (543)
..|+++++ ++|+++....+. +.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36776666 599998876542 466777766654
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=74.32 Aligned_cols=82 Identities=12% Similarity=0.113 Sum_probs=62.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-------------------------------------- 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-------------------------------------- 466 (543)
.++.++.|+..|||+|..+.|.+.++.+++++ +.|..+.+.
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~~~~~~~~~lf~~~~~~~~~ 101 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIR 101 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999875 666554431
Q ss_pred ------------------C------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------E------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------~------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
. +..++.++||.++||+++ ||+.+ +.|. +.+++.+.|+.
T Consensus 102 ~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~~l~~~i~~ 177 (195)
T 2znm_A 102 LENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQYRIDSTPTVIV--GGKYR--VIFNNGFDGGVHTIKE 177 (195)
T ss_dssp TTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEE--TTTEE--ECCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCeEEE--CCEEE--EcCCCCHHHHHHHHHH
Confidence 0 123577889999999544 88753 4576 88888888876
Q ss_pred cC
Q 009096 510 AP 511 (543)
Q Consensus 510 ~~ 511 (543)
.+
T Consensus 178 ~l 179 (195)
T 2znm_A 178 LV 179 (195)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=73.43 Aligned_cols=84 Identities=7% Similarity=0.062 Sum_probs=63.9
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.++++++.|| +.||++|....|.|.++.+++.++.++.|..|. ...+++.|||.
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~ 156 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAIT 156 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEEC
T ss_pred CCCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceee
Confidence 3578999999 689999999999999999999778888777653 24577888886
Q ss_pred -------cccEEEEE-ECCeEEEEEcCC---CHHHHHHHHH
Q 009096 479 -------TVPTFKIY-KNGEKLKEMINP---SHQFLEDSAN 508 (543)
Q Consensus 479 -------~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~ 508 (543)
.+|+++++ ++|+++.+..+. ...++++.|+
T Consensus 157 ~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~ 197 (200)
T 3zrd_A 157 EGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALA 197 (200)
T ss_dssp SSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred cccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHH
Confidence 36988888 599999887653 3334444444
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-06 Score=72.84 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~ 465 (543)
.+++++.|+..|||+|+.+.|.+.++.+++++ +.|..+++
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 56789999999999999999999999999986 77766665
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=70.93 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCc-
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRT- 479 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~- 479 (543)
.++++++.|| +.||++|....|.+.++.++ .++.++.|..|. ...+++.|||..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 123 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVME 123 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEET
T ss_pred CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCccc
Confidence 3578899999 78999999999999999887 777777776553 235778888875
Q ss_pred -----ccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHh
Q 009096 480 -----VPTFKIY-KNGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 480 -----~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
+|+++++ ++|+++.+..+. +.+++.+.|++
T Consensus 124 ~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 124 ELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred cCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988888 499999885432 45677777664
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.6e-06 Score=76.21 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCceeeeee-CCCCcccc-chhHhHHHHHhhC--CCe-EEEEEeCcC----------------------cHHHHHHcCC
Q 009096 425 SPGVSLVHFK-EASSEKCE-EISPFVNLLCVRY--PYV-HFFKVDVEE----------------------SLAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~-~~~p~l~~l~~~~--~~~-~~~~~d~~~----------------------~~~~~~~~~v 477 (543)
.++++++.|| ++||++|. ...|.|.++.+++ .++ .++.|..|. ...+++.|||
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 111 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM 111 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence 3568899998 99999999 8999999998887 358 888887763 1357888888
Q ss_pred C-----------cccEEEEEECCeEEEEEcCC
Q 009096 478 R-----------TVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 478 ~-----------~~Pt~~~~~~g~~~~~~~g~ 498 (543)
. +.|+.+++++|+++....|.
T Consensus 112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~ 143 (241)
T 1nm3_A 112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP 143 (241)
T ss_dssp EEECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred eeecccccCcccceeEEEEEECCEEEEEEEec
Confidence 6 35865555999999988875
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=72.86 Aligned_cols=82 Identities=17% Similarity=0.043 Sum_probs=62.0
Q ss_pred ceeeeeeCCCCccccc-hhHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcCCC--
Q 009096 428 VSLVHFKEASSEKCEE-ISPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~-~~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.+++.||++||++|.. -.|.|.++.+++ .++. ++.|..|. ...++++|||.
T Consensus 59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 138 (184)
T 3uma_A 59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEID 138 (184)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCcee
Confidence 5566778999999999 699999998887 3577 88887764 13578888885
Q ss_pred ---------cccEEEEEECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 479 ---------TVPTFKIYKNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 479 ---------~~Pt~~~~~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
+.|+.+++++|+++....|. +.+.++++|++
T Consensus 139 ~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 139 LSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred ccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 34766666999999988764 35667777664
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-06 Score=70.88 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhC--CC-eEEEEEeCc------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRY--PY-VHFFKVDVE------------------------------------ 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~--~~-~~~~~~d~~------------------------------------ 466 (543)
.+..++.|+..+||+|..+.|.+.++.++| ++ ++|...++.
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 456788999999999999999999888887 54 666654431
Q ss_pred ------------------------------CcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 467 ------------------------------ESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 467 ------------------------------~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
+...+++++||.++||+++ ||+. +.|. +.+++++.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~---~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE---ccCCCCHHHHHHHhcC
Confidence 0123467789999999655 8974 4687 99999998863
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=98.18 E-value=6.2e-06 Score=70.33 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--C-----------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--E----------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~----------------------------------- 467 (543)
..++++.|+.-.||+|+.+.|.+.++.+++++ +.|..+.+. .
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR 100 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999975 555544321 1
Q ss_pred --------------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHH
Q 009096 468 --------------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 468 --------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
...+++++||.|+||+++ ||+.+-...|. +.+++.+.|+
T Consensus 101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~ 178 (184)
T 4dvc_A 101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVN 178 (184)
T ss_dssp CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHH
T ss_pred hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHH
Confidence 024678889999999876 99865444556 8999999998
Q ss_pred hcCC
Q 009096 509 LAPS 512 (543)
Q Consensus 509 ~~~~ 512 (543)
.+++
T Consensus 179 ~Ll~ 182 (184)
T 4dvc_A 179 YLLT 182 (184)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=98.18 E-value=4e-06 Score=69.94 Aligned_cols=74 Identities=12% Similarity=-0.006 Sum_probs=56.6
Q ss_pred CCCceeeeee-CCCCccccc-hhHhHHHHHhhC--CCe-EEEEEeCcC-----------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEE-ISPFVNLLCVRY--PYV-HFFKVDVEE-----------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~-~~p~l~~l~~~~--~~~-~~~~~d~~~-----------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|.. -.|.|.++.+++ .++ .++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g 109 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD 109 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence 3456777775 999999999 899998888777 458 888887653 235788888
Q ss_pred CCcc-----------cEEEEEECCeEEEEEcCC
Q 009096 477 VRTV-----------PTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 477 v~~~-----------Pt~~~~~~g~~~~~~~g~ 498 (543)
|... |+++++++|+++...++.
T Consensus 110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 8754 875555999999987774
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-05 Score=74.90 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=118.3
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhc--CCcchhhHHhHHHHHHHcC---------CHHHHHHHHHHHHhcC-CCChh
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISM--SPENAAYRSNRAATLTALG---------RLTEAVSDCEEAVRLD-PGYNR 117 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~ 117 (543)
.+...-..+.+.|+.++|+.+|+++.+. .| +...|..+-.++...+ ..++|.+.|++..... +-+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3455567788999999999999999875 44 4556666655555443 3788999999887753 22567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhcCCCC---CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009096 118 AHQRLASLYFRLGQVENARHHLCFPGH---HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQL 194 (543)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 194 (543)
.|..+...|.+.|+.++|...|+++.+ .|+.. .+..+...+.+.|+.++|...+++..+.+-......
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR---------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc---------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 888899999999999999999987654 23322 244555666778888888888888877765555677
Q ss_pred HHHHHHHHHHccChhHHHHHhhcCCC
Q 009096 195 VACKAEAHLKLHQNEDADSCLSNMPK 220 (543)
Q Consensus 195 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 220 (543)
+..+...+.+.|+.++|.+++++..+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 77778888888888888888777643
|
| >1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=65.49 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred hhhhccCCCCceeeeeeC-----CCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEEC
Q 009096 418 KFKAAISSPGVSLVHFKE-----ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 418 ~~~~~i~~~~~~lv~f~~-----~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.+.+...+ ++ .|+. +||++|+.+.+.|+++ ++.|..+|++.+++ +....|..++|++ |.|
T Consensus 7 ~~~~~i~~~~-vv-vy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--fi~ 77 (109)
T 1wik_A 7 GLKVLTNKAS-VM-LFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--YVR 77 (109)
T ss_dssp CHHHHHTTSS-EE-EEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--ECS
T ss_pred HHHHHhccCC-EE-EEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--EEC
Confidence 3445554443 44 4666 9999999999999875 57788999987754 4556689999984 568
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 78 g~~ig 82 (109)
T 1wik_A 78 GDLVG 82 (109)
T ss_dssp SSEEE
T ss_pred CEEEc
Confidence 87654
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=74.39 Aligned_cols=86 Identities=14% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.||+ +||++|....|.|.++.++|. ++.++.|.+|. ...+++
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~ 155 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK 155 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence 46789999999 999999999999999999884 58888887663 135788
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcCC-----CHHHHHHHHHhc
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMINP-----SHQFLEDSANLA 510 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~~~~~~~~~ 510 (543)
.|||. .+|+++++. +|+++.+..+. +.+++.+.|+.+
T Consensus 156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89998 689888884 99999886652 567888877764
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=60.48 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=50.4
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH----HHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL----AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
++.|+++||++|+.+.+.+++. ++.|..+|++..+ ++.+.+|+.++|+++ .||+.+. |. ++|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe---CH--HHHHH
Confidence 5678999999999999999875 4566777877643 356788999999984 5887653 43 45666
Q ss_pred HHHh
Q 009096 506 SANL 509 (543)
Q Consensus 506 ~~~~ 509 (543)
+++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6553
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-06 Score=67.07 Aligned_cols=68 Identities=18% Similarity=0.385 Sum_probs=48.2
Q ss_pred hhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----H----HHHHHcCCCcccEEEEEEC
Q 009096 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----L----AIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 417 ~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~----~~~~~~~v~~~Pt~~~~~~ 488 (543)
+.+.+.+...+ ++.|+++|||+|+.+.+.|+++ ++.|..+|++.. + .+....|+.++|++ |.|
T Consensus 10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~ 80 (113)
T 3rhb_A 10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRL-----GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVC 80 (113)
T ss_dssp HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHc-----CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 44445554443 6679999999999999999885 344455666542 2 25566799999998 569
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 81 g~~ig 85 (113)
T 3rhb_A 81 GKHIG 85 (113)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 98765
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=71.97 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-------------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-------------------------------------- 467 (543)
+++++|.|+..|||+|+.+.|.+.++.+++ ++.|.++.+.-
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~ 100 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE 100 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999998877 55544444310
Q ss_pred ----------------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 468 ----------------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 468 ----------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
....+.++||.++||+++ ||+.+-...|. +.+++.+.
T Consensus 101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~~ 178 (185)
T 3feu_A 101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT 178 (185)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHHH
Confidence 012345668899999987 89865555788 99999999
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
|+..+
T Consensus 179 i~~ll 183 (185)
T 3feu_A 179 IRYLL 183 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=98.13 E-value=5e-06 Score=69.58 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=60.3
Q ss_pred ceeeeeeCCCCcccc-chhHhHHHHHhhCC--CeEEEE-EeCcC-----------------------cHHHHHHcCCC--
Q 009096 428 VSLVHFKEASSEKCE-EISPFVNLLCVRYP--YVHFFK-VDVEE-----------------------SLAIAKSEGVR-- 478 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~-~~~p~l~~l~~~~~--~~~~~~-~d~~~-----------------------~~~~~~~~~v~-- 478 (543)
.+++.||++||++|. .-.|.|.++.+++. ++.++. +..|. ...+++.|||.
T Consensus 46 vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 125 (173)
T 3mng_A 46 GVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLD 125 (173)
T ss_dssp EEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCC
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcc
Confidence 445566799999999 58899998888773 466664 65543 23688889986
Q ss_pred -----------cccEEEEEECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 479 -----------TVPTFKIYKNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 479 -----------~~Pt~~~~~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
..|+++++++|+++...++. +.++..+.|++
T Consensus 126 ~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 126 DSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp STTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred cccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 35887777799999887763 56777777764
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.6e-06 Score=62.33 Aligned_cols=58 Identities=10% Similarity=0.285 Sum_probs=45.6
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
.++.|+.+||++|+.+.+.|++. ++.|..+|++.++. +.+.+++.++|++ |.||+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 46789999999999999999874 46778888887654 4557899999975 55887544
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=68.51 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=58.3
Q ss_pred CCCceeeeee-CCCCcccc-chhHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCE-EISPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~-~~~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||++|. ...|.|.++.+++ .++. ++.|..|. ...+++.||
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG 113 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence 4578999999 89999999 8999999888777 3577 77766542 245788888
Q ss_pred CC-----------cccEEEEEECCeEEEEEcCC
Q 009096 477 VR-----------TVPTFKIYKNGEKLKEMINP 498 (543)
Q Consensus 477 v~-----------~~Pt~~~~~~g~~~~~~~g~ 498 (543)
|. .+|+++++.+|+++....|.
T Consensus 114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 86 27987777899999887775
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00019 Score=71.40 Aligned_cols=170 Identities=10% Similarity=-0.037 Sum_probs=111.9
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHH
Q 009096 162 NRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMF 241 (543)
Q Consensus 162 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (543)
.....+.+.|+.++|+..|++..+.+-..+...|..+-.++...+...+
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------------------------------- 79 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------------------------------- 79 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------------------------------
Confidence 3345667788888888888887776544444555554444433322111
Q ss_pred HHhhcChHHHHHHHHHHhhc--CCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-CCChhHHhHH
Q 009096 242 NISELRFENAVSSAEKAGLL--DYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD-SYNSILYCNR 318 (543)
Q Consensus 242 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 318 (543)
....+..++|.+.|++.... .|+.... ..+-..+.+.|++++|.++|++..+.. .-+...|..+
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty-------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATF-------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 01223456677777776543 3443332 124566778888888888888876642 2246778888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 009096 319 AICWSKMGLWENSIEDCNVALRIQ-PNYTKALLRRAVSNEKLGRWSEAVRDYEALRRE 375 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 375 (543)
-..|.+.|+.++|.+.|++..+.. .-+...|..+-.++.+.|+.++|.+.+++..+.
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 888888888888888888887653 224677888888888888888888888887664
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-06 Score=71.13 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVE 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~ 466 (543)
..++++.|+..|||+|+.+.|.+ .++.+++++ ++|..+++.
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 36889999999999999999987 688888875 877777654
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-06 Score=69.72 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=58.4
Q ss_pred CceeeeeeCCCCccccch-hHhHHHHHhhC--CCeE-EEEEeCcC-----------------------cHHHHHHcCCCc
Q 009096 427 GVSLVHFKEASSEKCEEI-SPFVNLLCVRY--PYVH-FFKVDVEE-----------------------SLAIAKSEGVRT 479 (543)
Q Consensus 427 ~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~--~~~~-~~~~d~~~-----------------------~~~~~~~~~v~~ 479 (543)
..+++.||++||++|..- .|.|.++.+++ .++. ++.|+.+. ...+++.|||..
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~ 124 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT 124 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCcc
Confidence 467789999999999998 99999888877 3577 88887653 235677778752
Q ss_pred -----------cc-EEEEEECCeEEEEEcCC-C----HHHHHHHHH
Q 009096 480 -----------VP-TFKIYKNGEKLKEMINP-S----HQFLEDSAN 508 (543)
Q Consensus 480 -----------~P-t~~~~~~g~~~~~~~g~-~----~~~~~~~~~ 508 (543)
.| |+++. +|+++....|. . ..+..+.|+
T Consensus 125 ~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~~~~~~~~~il~ 169 (171)
T 2pwj_A 125 DLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSDVKVSGAETILG 169 (171)
T ss_dssp ECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTCCSSSSHHHHHH
T ss_pred ccccccCCcccceeEEEEE-CCEEEEEEeecCCCCCcccCHHHHHh
Confidence 34 45554 99999988875 2 345555554
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-05 Score=67.87 Aligned_cols=82 Identities=15% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-------------------------------------- 466 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-------------------------------------- 466 (543)
.+..++.|+..+||+|..+.|.+.++.+++++ +.|..+.+.
T Consensus 25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~a~~~a~~~~~~~~~~~~lf~~~~~~~~~ 104 (193)
T 2rem_A 25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLGVAKRSHTAMFEAIHEKGSV 104 (193)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhccc
Confidence 34578999999999999999999999999975 666554431
Q ss_pred -----C---------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHH
Q 009096 467 -----E---------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSAN 508 (543)
Q Consensus 467 -----~---------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~ 508 (543)
. ...++.++||.++||+++ ||+.+ +.|.+.+++.+.|+
T Consensus 105 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vi--ng~~~--~~g~~~~~l~~~i~ 180 (193)
T 2rem_A 105 PIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVV--NGRYM--VTGHDFEDTLRITD 180 (193)
T ss_dssp CSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEE--TTTEE--ECCSSHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEE--ecCCCHHHHHHHHH
Confidence 0 023567889999999554 88754 34558899999988
Q ss_pred hcC
Q 009096 509 LAP 511 (543)
Q Consensus 509 ~~~ 511 (543)
..+
T Consensus 181 ~~~ 183 (193)
T 2rem_A 181 YLV 183 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.6e-05 Score=57.32 Aligned_cols=99 Identities=9% Similarity=-0.033 Sum_probs=79.7
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CChhHHhHHHH
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSE---ACSAYGEGLKYD-S-YNSILYCNRAI 320 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 320 (543)
.....+...|.+.+..++....+. ++.|+++.+..+... ++.+++..+..+ | ..-+.++.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~------------F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQ------------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHH------------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHH------------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344556667777777666666553 457999988887666 999999999887 5 46789999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 321 CWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 321 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.++++|+|++|+.+++.+++..|+|..+......+-
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998876655543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0001 Score=57.73 Aligned_cols=121 Identities=11% Similarity=-0.057 Sum_probs=93.5
Q ss_pred hcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHhccCCCC--------hhHHhHHHHHHHHc
Q 009096 260 LLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY------SEACSAYGEGLKYDSYN--------SILYCNRAICWSKM 325 (543)
Q Consensus 260 ~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~ 325 (543)
-+.|.+++.|..+ .......|+. ++-++.|++|+..-|.. ...|...|.. ...
T Consensus 7 ~~~p~~yd~W~~y------------l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPEDWLSL------------LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHHHHHHH------------HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHHHHHHH------------HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 3578888887543 3344445777 88889999999876653 3556666655 567
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 326 GLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 326 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
++.++|.+.|+.++.+....+.+|...|....+.|+...|.+.+.+|+.+.|...+. +..+...++..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~---le~a~~nl~~~ 141 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM---LEIALRNLNLQ 141 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH---HHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH---HHHHHHhhhcC
Confidence 999999999999999988899999999999999999999999999999999988766 34444455433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=98.05 E-value=9.1e-05 Score=56.94 Aligned_cols=87 Identities=15% Similarity=0.022 Sum_probs=75.8
Q ss_pred CChhHHhHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 310 YNSILYCNRAICWSKMGLW---ENSIEDCNVALRIQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
-++.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.+|..+.++|+|++|.++.+.++++.|+|.++...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3578999999999988764 5799999999998885 46899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhh
Q 009096 386 LHNAQVALKKS 396 (543)
Q Consensus 386 l~~~~~~l~~~ 396 (543)
...+...+.+.
T Consensus 118 k~~Ie~ki~kd 128 (134)
T 3o48_A 118 KSMVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 77777666543
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=98.05 E-value=7.5e-06 Score=73.22 Aligned_cols=86 Identities=14% Similarity=0.018 Sum_probs=67.8
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| +.||++|....|.|.++.++|. ++.++.|.+|. ...+++
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~ 169 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 169 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence 3578999999 8999999999999999998884 58888777663 235788
Q ss_pred HcCCC------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 474 SEGVR------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
.|||. .+|+++++. +|+++.+..+ .+.+++.+.|+.+
T Consensus 170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al 218 (254)
T 3tjj_A 170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218 (254)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88986 579877775 9999988665 2567887777754
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=59.32 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=50.5
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHcCC-----CcccEEEEEECCeEEEEEcCCC
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSEGV-----RTVPTFKIYKNGEKLKEMINPS 499 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~~v-----~~~Pt~~~~~~g~~~~~~~g~~ 499 (543)
.++.|+.+||++|+.+.+.|+++.- .+.+..+|++.. .++.+.+|. .++|++++ ||+.+. |.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~---g~- 75 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG---GF- 75 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE---SH-
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe---Ch-
Confidence 4677899999999999999887532 245555666544 457778888 99999854 887654 44
Q ss_pred HHHHHHHHHhc
Q 009096 500 HQFLEDSANLA 510 (543)
Q Consensus 500 ~~~~~~~~~~~ 510 (543)
+++.+++++.
T Consensus 76 -~~i~~~~~~~ 85 (89)
T 3msz_A 76 -TELKANADKI 85 (89)
T ss_dssp -HHHHHTHHHH
T ss_pred -HHHHHHHHHH
Confidence 3555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00022 Score=55.66 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=75.3
Q ss_pred CCChhHHhHHHHHHHHccCH---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHH
Q 009096 309 SYNSILYCNRAICWSKMGLW---ENSIEDCNVALRIQPN-YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAE 384 (543)
Q Consensus 309 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 384 (543)
.-+..+.+++|+++.+..+. .+++..++..+...|. .-+.+|.+|..+.++|+|++|.++.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45689999999999998764 5799999999998885 4588999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHh
Q 009096 385 SLHNAQVALKK 395 (543)
Q Consensus 385 ~l~~~~~~l~~ 395 (543)
....+...+.+
T Consensus 116 Lk~~Ie~~i~k 126 (144)
T 1y8m_A 116 LKSMVEDKIQK 126 (144)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666655543
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.6e-05 Score=67.25 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=76.6
Q ss_pred eEEeehhhhhhhccCCC-CceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc--CcHHHHHHcCCC--cccEE
Q 009096 410 VEEISSLEKFKAAISSP-GVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE--ESLAIAKSEGVR--TVPTF 483 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~-~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~--~~~~~~~~~~v~--~~Pt~ 483 (543)
+.+++ .+.+......+ ...++.|..+||+.|..+.+.+.++++++.+ +.|+.+|.+ ....+++.||+. .+|++
T Consensus 115 v~e~t-~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~ 193 (227)
T 4f9z_D 115 VTEYN-PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPAL 193 (227)
T ss_dssp EEECC-HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEE
T ss_pred eeecC-cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEE
Confidence 34443 34455555444 3455667788999999999999999999976 999999996 467789999998 89999
Q ss_pred EEEECCe-EEEEE-cCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGE-KLKEM-INP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~-~~~~~-~g~-~~~~~~~~~~~~~~ 512 (543)
+++..+. ..... .|. +++.|++|++.+++
T Consensus 194 ~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 194 AIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp EEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence 9997332 22333 355 99999999998754
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.2e-06 Score=64.69 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=48.7
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC--c-----HHHHHHcCCCcccEEEEEEC
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE--S-----LAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~--~-----~~~~~~~~v~~~Pt~~~~~~ 488 (543)
...+++.+..++ ++.|+.+|||.|+.+.+.|+++ ++.|..+|++. . ..+.+..|..++|++++ |
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~-----~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSL-----GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHc-----CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 344555554333 4449999999999999999885 34556667663 2 33667789999999855 8
Q ss_pred CeEEE
Q 009096 489 GEKLK 493 (543)
Q Consensus 489 g~~~~ 493 (543)
|+.+.
T Consensus 78 g~~ig 82 (114)
T 3h8q_A 78 KVHVG 82 (114)
T ss_dssp TEEEE
T ss_pred CEEEe
Confidence 97665
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.9e-06 Score=66.26 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=50.3
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccch-hHhHHHHHhhCCCeEEEEEeCcCc-------HHHHHHcCCCcccEEEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEI-SPFVNLLCVRYPYVHFFKVDVEES-------LAIAKSEGVRTVPTFKIY 486 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~-~p~l~~l~~~~~~~~~~~~d~~~~-------~~~~~~~~v~~~Pt~~~~ 486 (543)
..+.+.+.+...+ ++.|+.+|||+|+.+ .+.|+++... .+.+..+|++.. .++.+.+|+.++|++ |
T Consensus 26 ~~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--f 99 (129)
T 3ctg_A 26 TVAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--Y 99 (129)
T ss_dssp HHHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred HHHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--E
Confidence 3345555554333 677999999999999 8888775422 244555555532 468888999999995 6
Q ss_pred ECCeEEE
Q 009096 487 KNGEKLK 493 (543)
Q Consensus 487 ~~g~~~~ 493 (543)
.||+.+.
T Consensus 100 i~g~~ig 106 (129)
T 3ctg_A 100 INGKHIG 106 (129)
T ss_dssp ETTEEEE
T ss_pred ECCEEEc
Confidence 6898654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=4.8e-05 Score=61.16 Aligned_cols=94 Identities=20% Similarity=0.078 Sum_probs=78.6
Q ss_pred HHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcch---------hhHHhHHHHHHHcCCHHHHHHHHHHHHhcC------C-
Q 009096 50 EVKRAGNEMYRKGNFVEALKLYDKAISMSPENA---------AYRSNRAATLTALGRLTEAVSDCEEAVRLD------P- 113 (543)
Q Consensus 50 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p- 113 (543)
+++.....++..|.|+.|+.....++....+++ .++..+|.+++..++|..|...|+++++.. |
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 577888899999999999999999887643333 478999999999999999999999987642 1
Q ss_pred ------------------CChhHHHHHHHHHHHhCCHHHHHHHhcCCC
Q 009096 114 ------------------GYNRAHQRLASLYFRLGQVENARHHLCFPG 143 (543)
Q Consensus 114 ------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 143 (543)
...+..+.++.||..++++++|+..++..-
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 112678999999999999999999998764
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.91 E-value=4.2e-05 Score=63.94 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=58.9
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhC----CCeEEEEEeCcCc---H----HHHHHcCC---------------
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRY----PYVHFFKVDVEES---L----AIAKSEGV--------------- 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~----~~~~~~~~d~~~~---~----~~~~~~~v--------------- 477 (543)
.++++++.||.+||+ .|....+.+.++.+.+ .++.++.|.+|.. + ..+++|++
T Consensus 31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~ 110 (170)
T 4hde_A 31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED 110 (170)
T ss_dssp TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence 468999999999997 7998888887776655 3478887776521 1 12222221
Q ss_pred ---------------------CcccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhc
Q 009096 478 ---------------------RTVPTFKIY-KNGEKLKEMINP---SHQFLEDSANLA 510 (543)
Q Consensus 478 ---------------------~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~ 510 (543)
...|+++++ ++|+++.++.|. +.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 223566666 599999988885 567777777654
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-05 Score=66.60 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=79.5
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
....+.+.+.+++.+..+..++|-|+++| |....|.+.+++..+.++.|+... +.+++.+++|.+ ||+++|++
T Consensus 10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~~~~F~~t~---~~~v~~~~~v~~-p~i~lfk~ 82 (227)
T 4f9z_D 10 EPTWLTDVPAAMEFIAATEVAVIGFFQDL---EIPAVPILHSMVQKFPGVSFGIST---DSEVLTHYNITG-NTICLFRL 82 (227)
T ss_dssp CCEECCSHHHHHHHHHTSSEEEEEECSCS---CSTHHHHHHHHTTTCTTSEEEEEC---CHHHHHHTTCCS-SEEEEEET
T ss_pred CCeeeCCHHHHHHHHhcCCeEEEEEecCC---CchhHHHHHHHHHhCCCceEEEEC---CHHHHHHcCCCC-CeEEEEEe
Confidence 45677788888888888999999999998 578889999999999778888643 678999999998 99999997
Q ss_pred Ce-EEEEEc----C-CCHHHHHHHHHhcCCC
Q 009096 489 GE-KLKEMI----N-PSHQFLEDSANLAPSP 513 (543)
Q Consensus 489 g~-~~~~~~----g-~~~~~~~~~~~~~~~~ 513 (543)
+. ....+. | .+.+.|.+||+...-|
T Consensus 83 ~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p 113 (227)
T 4f9z_D 83 VDNEQLNLEDEDIESIDATKLSRFIEINSLH 113 (227)
T ss_dssp TTTEEEEECHHHHHTCCHHHHHHHHHHHCCC
T ss_pred cCcccccccccccCCCCHHHHHHHHHHhCCC
Confidence 53 233344 3 4999999999987543
|
| >1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.86 E-value=6.6e-06 Score=70.45 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeCcCc
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDVEES 468 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~~~~ 468 (543)
.++++|.||+.|||+|+.+.|.+ +++.+++++ ++|.+++++.+
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 56899999999999999999999 999999985 99999999864
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.85 E-value=4e-05 Score=67.23 Aligned_cols=83 Identities=8% Similarity=0.060 Sum_probs=64.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------------cHHHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------------SLAIAKS 474 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------------~~~~~~~ 474 (543)
.+++.||++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ 113 (224)
T 1prx_A 34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL 113 (224)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence 56666799999999999999999988874 57887776653 1347778
Q ss_pred cCCC------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 475 EGVR------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8884 378888885 9999988764 3688898888865
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=59.06 Aligned_cols=106 Identities=12% Similarity=0.029 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhC------C---
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------SILYCNRAICWSKMGLWENSIEDCNVALRIQ------P--- 343 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p--- 343 (543)
++....+...+.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++.. +
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345777889999999999999877664333 3488999999999999999999999997642 1
Q ss_pred ----------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 344 ----------------NYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 344 ----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
.+.+..+.++.|+.+++++++|+..++.. -..-..+.+...|++
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLAN 163 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHH
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHH
Confidence 11268899999999999999999987642 111234455544444
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=97.80 E-value=4.3e-05 Score=66.80 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=64.5
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHHcCC
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKSEGV 477 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~~~v 477 (543)
.+++.||++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.|||
T Consensus 34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv 113 (220)
T 1xcc_A 34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI 113 (220)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence 45556799999999999999999888773 58888777653 2357788888
Q ss_pred C------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 478 R------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 478 ~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4 478888885 9999988753 4788999988865
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=97.75 E-value=6.9e-05 Score=65.90 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=65.0
Q ss_pred Cceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------------cHHHHHH
Q 009096 427 GVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------------SLAIAKS 474 (543)
Q Consensus 427 ~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------------~~~~~~~ 474 (543)
+++++.|| ++||+.|....|.|.++.+++. ++.++.|.+|. ...+++.
T Consensus 30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ 109 (233)
T 2v2g_A 30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK 109 (233)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence 47888888 8999999999999998887773 57777776552 2347778
Q ss_pred cCCC------------cccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 475 EGVR------------TVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
|||. .+|+++++. +|+++....| .+.+++.+.|+.+
T Consensus 110 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 110 LGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp TTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8885 578888885 9999988754 3678888888865
|
| >3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A | Back alignment and structure |
|---|
Probab=97.74 E-value=4.4e-05 Score=65.08 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=33.7
Q ss_pred CCceeeeeeCCCCccccchhHhH---HHHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFV---NLLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~-~~~~~~d~ 465 (543)
.++.++.|+..|||+|..+.|.+ .++.+++++ ++|..+++
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~ 64 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV 64 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence 37899999999999999999987 699999984 76666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00028 Score=55.33 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=88.6
Q ss_pred ccccccCHHHHHHHhhHHHhcCCH------HHHHHHHHHHHhcCCcc--------hhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 41 TSNVAVDAEEVKRAGNEMYRKGNF------VEALKLYDKAISMSPEN--------AAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 41 ~~~~~~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
+.+.|.+++.|.......-..|+. ++-++.|++|+..-|-. ...|...|.. ...++.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 356799999999999999999999 99999999999876643 3445555544 56799999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChH
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPN 149 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~ 149 (543)
.++++....+..|...|..-.++|+...|...+.+++. .+.|.
T Consensus 85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 99999888999999999999999999999999988876 44433
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00033 Score=58.30 Aligned_cols=86 Identities=12% Similarity=0.061 Sum_probs=66.1
Q ss_pred cCCCCceeeeeeCCCCccccchhH------hHHHHHhhCCCeEEEEEeCcCcH---------------HHHHH---cCCC
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISP------FVNLLCVRYPYVHFFKVDVEESL---------------AIAKS---EGVR 478 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p------~l~~l~~~~~~~~~~~~d~~~~~---------------~~~~~---~~v~ 478 (543)
-...+.++|+++++||..|..+.. .+.++..+ ++.++..|++..+ .++.. +++.
T Consensus 52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~--nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~ 129 (178)
T 2ec4_A 52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ--NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTD 129 (178)
T ss_dssp TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH--TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCST
T ss_pred hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc--CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCC
Confidence 445789999999999999998764 23333332 6889999998654 45544 8999
Q ss_pred cccEEEEEE-C---CeEEEEEcCC-CHHHHHHHHHhc
Q 009096 479 TVPTFKIYK-N---GEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 479 ~~Pt~~~~~-~---g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
++|++.++. . ++++.++.|. +++++.+.|.+.
T Consensus 130 ~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~ 166 (178)
T 2ec4_A 130 QFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 166 (178)
T ss_dssp TCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999984 2 3678999999 999998888754
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00025 Score=61.30 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=61.2
Q ss_pred CCCceeeeeeCCC-Ccccc-----chhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHc
Q 009096 425 SPGVSLVHFKEAS-SEKCE-----EISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSE 475 (543)
Q Consensus 425 ~~~~~lv~f~~~~-c~~c~-----~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~ 475 (543)
.++++++.||..| |+.|. ...|.|.++ +.++.++.|..|. ...+++.|
T Consensus 47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~y 123 (224)
T 3keb_A 47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRY 123 (224)
T ss_dssp TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHT
T ss_pred CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHh
Confidence 3578999999887 99999 666666665 5677777776552 24688999
Q ss_pred CCCc---------ccEEEEEE-CCeEEEEEcC-----C-CHHHHHHHHHhc
Q 009096 476 GVRT---------VPTFKIYK-NGEKLKEMIN-----P-SHQFLEDSANLA 510 (543)
Q Consensus 476 ~v~~---------~Pt~~~~~-~g~~~~~~~g-----~-~~~~~~~~~~~~ 510 (543)
||.. +|+++++. +|+++....+ . +.+++.+.|+..
T Consensus 124 Gv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 124 GVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp TCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred CCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence 9975 79888885 9999887543 2 577777777754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 543 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-13 | |
| d2trcp_ | 217 | c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [ | 6e-18 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-16 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-07 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-11 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-12 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 6e-12 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-11 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-11 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-10 | |
| d2ifqa1 | 105 | c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien | 2e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-04 | |
| d1gh2a_ | 107 | c.47.1.1 (A:) Thioredoxin-like protein, N-terminal | 4e-09 | |
| d1r26a_ | 113 | c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax | 6e-09 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 7e-09 | |
| d1syra_ | 103 | c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas | 1e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 2e-08 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 3e-08 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 7e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-04 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-08 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-05 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-07 | |
| d1ti3a_ | 113 | c.47.1.1 (A:) Thioredoxin {European aspen (Populus | 2e-07 | |
| d1xfla_ | 114 | c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi | 2e-06 | |
| d1nw2a_ | 105 | c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc | 2e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-05 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.001 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 0.001 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-05 | |
| d1ep7a_ | 112 | c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt | 3e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-04 | |
| d1xwaa_ | 111 | c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m | 2e-04 | |
| d1woua_ | 119 | c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi | 4e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.004 | |
| d2cfua2 | 505 | d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudo | 6e-04 | |
| d1f9ma_ | 112 | c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera | 8e-04 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 0.001 | |
| d1qgva_ | 137 | c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human | 0.002 | |
| d1meka_ | 120 | c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu | 0.002 | |
| d2b5ea4 | 119 | c.47.1.2 (A:23-141) Protein disulfide isomerase, P | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (279), Expect = 2e-27
Identities = 58/341 (17%), Positives = 116/341 (34%), Gaps = 26/341 (7%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+ Y+ G+F A + + P+N ++ RL + A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
A+ L ++Y GQ++ A H + + + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 175 TVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLV 234
+ L+ P L +++ L + + K P V
Sbjct: 126 SALQYN-----------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV---A 171
Query: 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRY 294
W ++ A+ EKA LD + ++ L GN L +R +
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL------------GNVLKEARIF 219
Query: 295 SEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAV 354
A +AY L +++++ N A + + GL + +I+ A+ +QP++ A A
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279
Query: 355 SNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
+ ++ G +EA Y R P + +L N +
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.3 bits (181), Expect = 7e-15
Identities = 48/305 (15%), Positives = 79/305 (25%), Gaps = 60/305 (19%)
Query: 56 NEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115
N + G EA Y KAI P A SN A G + A+ E+AV LDP +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 116 NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKT 175
A+ L ++ + A L H N + G
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALS-------LSPNHAVVHGNLACVYYEQGLIDL 255
Query: 176 VLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVW 235
+ AI + P A A + +A+ C + +
Sbjct: 256 AIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT----------- 303
Query: 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYS 295
N
Sbjct: 304 -----------------------------------------HADSLNNLANIKREQGNIE 322
Query: 296 EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355
EA Y + L+ + + N A + G + ++ A+RI P + A +
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 356 NEKLG 360
+++
Sbjct: 383 LKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 51/368 (13%), Positives = 97/368 (26%), Gaps = 49/368 (13%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATL--------------------TA 94
+ ++ + AI +P A SN
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 95 LGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKL 154
++ A G +A+ L V + +L + + L
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 155 QSFEKHLNRCAESRKIGDWKTVLRETDAAI-----AIGVD-SSPQLVACKAEAHLKLHQN 208
++ E N +G E AI A+ +D + +
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219
Query: 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268
+ A + + + A+ + +A L +
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQG------LIDLAIDTYRRAIELQPHFPDA 273
Query: 269 ASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLW 328
L N L +EA Y L+ ++ N A + G
Sbjct: 274 YCNL------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLH 387
E ++ AL + P + A A ++ G+ EA+ Y+ A+R A++
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPTFADAYS 377
Query: 388 NAQVALKK 395
N LK+
Sbjct: 378 NMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.5 bits (171), Expect = 1e-13
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
N +GN EA++LY KA+ + PE AA SN A+ L G+L EA+ +EA+R+ P
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371
Query: 115 YNRAHQRLASLYFRLG 130
+ A+ + + +
Sbjct: 372 FADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (167), Expect = 3e-13
Identities = 43/280 (15%), Positives = 75/280 (26%), Gaps = 60/280 (21%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106
A G +G A+ ++KA+++ P N L AV+
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAE 166
A+ L P + H LA +Y+ G ++ A + ++ +
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLA------------------IDTYRR------- 262
Query: 167 SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP 226
AI + P A A + +A+ C + +
Sbjct: 263 ----------------AIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 227 PSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286
S + E AV KA + S L +
Sbjct: 306 DSLNNLANIKREQG------NIEEAVRLYRKALEVFPEFAAAHSNL------------AS 347
Query: 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMG 326
L + EA Y E ++ + Y N +M
Sbjct: 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.5 bits (198), Expect = 6e-18
Identities = 32/180 (17%), Positives = 69/180 (38%), Gaps = 8/180 (4%)
Query: 329 ENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHN 388
E+ I + R +++ ++++YE + ++ + + +
Sbjct: 24 EDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRK---Y 80
Query: 389 AQVALKKSRGEFVNNMKMSGEVEEISSLEKFKAAISSPGVS---LVHFKEASSEKCEEIS 445
+ ++ + + G V E+ + E+F I +V+ E C+ ++
Sbjct: 81 RRQCMQDMHQKLSFGPR-YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALN 139
Query: 446 PFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
+ L YP V F K+ + A + +PT +YK GE + I+ + QF ED
Sbjct: 140 SSLECLAAEYPMVKFCKIRASNTGAGDR-FSSDVLPTLLVYKGGELISNFISVAEQFAED 198
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 77.4 bits (190), Expect = 2e-16
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 6/132 (4%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
+G +AL+L +AI SP++A+ RS+ L G A ++++L P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 115 YNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWK 174
Y +L L ++ + EL K S D++
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSL------VSFNLSMVSQDYE 116
Query: 175 TVLRETDAAIAI 186
V +
Sbjct: 117 QVSELALQIEEL 128
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.4 bits (120), Expect = 2e-07
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 17/142 (11%)
Query: 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQ 342
T+ N S + +A E +K ++ L + G +E + E ++++
Sbjct: 1 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60
Query: 343 PNYTKALLRRAVSNEKLGRWSEAVRDY-----------------EALRRELPGDNEVAES 385
P Y + + + + + D E
Sbjct: 61 PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 386 LHNAQVALKKSRGEFVNNMKMS 407
L L++ +G N+ S
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.0 bits (152), Expect = 1e-12
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335
K ++ + GN+ + + + A Y + + D N N+A + + G + E C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61
Query: 336 NVALRIQP-------NYTKALLRRAVSNEKLGRWSEAVRDYE-ALRRELPGDNEVAESLH 387
A+ + KA R S K ++ +A+ Y +L +V +
Sbjct: 62 EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL--AEHRTPDVLKKCQ 119
Query: 388 NAQVALKK 395
A+ LK+
Sbjct: 120 QAEKILKE 127
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 2e-11
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A + K GN+ Y+K +F ALK YDKA + P N Y +N+AA G + CE+
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHL-----CFP---GHHPDPNELLKLQSFEK 159
A+ + ++++A Y R+G + H P+ L K Q EK
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 160 HL 161
L
Sbjct: 124 IL 125
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 1e-12
Identities = 48/327 (14%), Positives = 82/327 (25%), Gaps = 32/327 (9%)
Query: 71 YDKAISMSPEN------AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124
YDK EN + G L AV E AV+ DP + A Q L +
Sbjct: 4 YDKGYQFEEENPLRDHPQPF--EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61
Query: 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184
Q A L L+L+ + +
Sbjct: 62 TQAENEQELLAISAL---------RRCLELKPDNQTALMALAVSFTNESLQRQACEILRD 112
Query: 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS 244
+ + + AE + L ++ + ++ L
Sbjct: 113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172
Query: 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG 304
+++ V + A++ + G L + + EA +AY
Sbjct: 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 232
Query: 305 LKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE------- 357
L+ N I +G ++E AL +Q +E
Sbjct: 233 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 292
Query: 358 ----KLGRWSEAV----RDYEALRREL 376
LG+ RD L
Sbjct: 293 LALSMLGQSDAYGAADARDLSTLLTMF 319
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.7 bits (151), Expect = 6e-12
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
A+E+K GN ++ + EA Y +AI+ +P A Y +NRA + + +A++DC
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
A+ LD +AH L + + A +L
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.5 bits (148), Expect = 2e-11
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ +GN LF R+Y EA + YG + + ++ Y NRA+C+ KM E ++ DC AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYE 370
KA ++ + EA+ + +
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQ 96
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 63.0 bits (151), Expect = 2e-11
Identities = 36/314 (11%), Positives = 77/314 (24%), Gaps = 17/314 (5%)
Query: 73 KAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYN-----RAHQRLASLYF 127
K I +A + + RA G EA + A+ P A L +
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 128 RLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG 187
G++ + + + + + + G +T + A +
Sbjct: 63 CKGELTRSLALMQQ-TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 188 VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELR 247
+ + + Q A + L + +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 248 FENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRART-RGNNLFSSRRYSEACSAYGEGLK 306
L+ + + + + A R + + A + K
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 307 YDSYNSIL----YCNRAICWSKMGLWENSIEDCNVALRI------QPNYTKALLRRAVSN 356
+ N+ + N A +G +E + + + LL
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 357 EKLGRWSEAVRDYE 370
+ GR S+A R
Sbjct: 302 WQAGRKSDAQRVLL 315
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.4 bits (145), Expect = 1e-10
Identities = 37/333 (11%), Positives = 81/333 (24%), Gaps = 46/333 (13%)
Query: 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTAL----------GRL 98
+ + L+L + + +P+ A + R L L +
Sbjct: 30 SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89
Query: 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFE 158
+ E +R++P L RL + AR L+
Sbjct: 90 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC-------ARFLEADERN 142
Query: 159 KHLNRCAE---SRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCL 215
H ++ L TD+ I + ++ +LH D+
Sbjct: 143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH-YRSCLLPQLHPQPDSGPQG 201
Query: 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV 275
L+L+ N + + LL + L
Sbjct: 202 RLPENVLLKE-----------LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCEL--- 247
Query: 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDC 335
+ E+C E + + + + + +++
Sbjct: 248 --------SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299
Query: 336 NVALRIQP---NYTKALLRRAVSNEKLGRWSEA 365
+ + P Y L + + + + A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.5 bits (133), Expect = 2e-10
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 410 VEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V++I S F+ A+ + G + +V F C+ I PF + L +Y V F +VDV++
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
+A V+ +PTF+ +K G+K+ E + + LE
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEA 99
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-09
Identities = 31/296 (10%), Positives = 69/296 (23%), Gaps = 67/296 (22%)
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEK 159
++ +A L + A ++ +++ ++K
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---------------------YQK 42
Query: 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMP 219
+ ++ + + K E L H ++ + L
Sbjct: 43 -----------------------MLVTDLEYA---LDKKVEQDLWNHAFKNQITTLQGQA 76
Query: 220 KFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279
K S+V+ L L + + + +D +S L
Sbjct: 77 KNRANPNRSEVQ---ANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQL------- 126
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVAL 339
G S Y + + + A
Sbjct: 127 -----GIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAA 179
Query: 340 RIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395
++ P+ + + A+ G + Y R + + N Q AL K
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYC---RSIAVKFPFPAASTNLQKALSK 232
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (131), Expect = 1e-08
Identities = 25/284 (8%), Positives = 65/284 (22%), Gaps = 64/284 (22%)
Query: 65 VEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLAS 124
+++ + +A + + + A T+ L + ++ + D Y +
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59
Query: 125 LYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAI 184
L W + +
Sbjct: 60 L-----------------------------------------------WNHAFKNQITTL 72
Query: 185 AIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNIS 244
+ + +A+L L + + + + + +
Sbjct: 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK 132
Query: 245 ELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEG 304
+ V + + + G+ + S+A S Y
Sbjct: 133 QTHTSAIVKPQSSSCSYICQHCLVH--------------LGDIARYRNQTSQAESYYRHA 178
Query: 305 LKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA 348
+ N Y AI S G +I ++ ++ + A
Sbjct: 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (122), Expect = 2e-07
Identities = 10/83 (12%), Positives = 25/83 (30%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPG 114
G+ + +A Y A + P N + A ++ G + ++ +
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 115 YNRAHQRLASLYFRLGQVENARH 137
+ A L + + +
Sbjct: 219 FPAASTNLQKALSKALESRDEVK 241
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 8/100 (8%), Positives = 17/100 (17%), Gaps = 9/100 (9%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISM-------SPENAAYRSNRAATLTALGRLT 99
+ R+ + A Y + + S +
Sbjct: 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTS 137
Query: 100 EAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL 139
V + L + Q A +
Sbjct: 138 AIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYY 175
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 4e-09
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 410 VEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE 467
V+ + S F+ +S G +++V F C I+P + + +YP F +VDV +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 468 SLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
A + + PTF+ ++N ++ + LE+
Sbjct: 63 CQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEE 100
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Score = 51.8 bits (123), Expect = 6e-09
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 404 MKMSGE---VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHF 460
++M V ++ S+E+F+ +S +++ F C+ I + + +P V F
Sbjct: 1 IRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKF 60
Query: 461 FKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
KVD + + I V +PTF I ++G+ L +I + L
Sbjct: 61 AKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQ 105
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (128), Expect = 7e-09
Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 17/193 (8%)
Query: 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDC 105
V+A + G K ++ AL + ++ N T L +TEA
Sbjct: 3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 59
Query: 106 EEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNEL---------LKLQS 156
++ D A+ + LY++ + + A L N+L KL +
Sbjct: 60 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 119
Query: 157 FEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLS 216
E N K +WK + A ++ + + KA + + +
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID-KAMECVWKQKLYEPVV--- 175
Query: 217 NMPKFEHYSPPSQ 229
+P + P +
Sbjct: 176 -IPVGRLFRPNER 187
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 50.6 bits (120), Expect = 1e-08
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL 469
V+ ++S +F + IS + +V F C+ I+PF Y + F KVDV+E
Sbjct: 2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 61
Query: 470 AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
+ + E + ++PTFK+YKNG + ++ + L+
Sbjct: 62 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQ 97
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 51.5 bits (122), Expect = 2e-08
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 15/138 (10%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAY---------------GEGLKYDSYNSILYCNRA 319
++ + +G F +Y +A Y E +S+ + N A
Sbjct: 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71
Query: 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
+C+ K+ + ++E C+ AL + K L RR + + + A D+E + P +
Sbjct: 72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131
Query: 380 NEVAESLHNAQVALKKSR 397
+ Q K+
Sbjct: 132 KAARLQIFMCQKKAKEHN 149
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 41.5 bits (96), Expect = 6e-05
Identities = 18/137 (13%), Positives = 33/137 (24%), Gaps = 49/137 (35%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISM---------------SPENAAYRSNRAATL 92
A VK G ++ G +V+A+ Y K +S A N A
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 93 T----------------------------------ALGRLTEAVSDCEEAVRLDPGYNRA 118
+ A D E+ + ++P A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 119 HQRLASLYFRLGQVENA 135
++ + +
Sbjct: 135 RLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 3/124 (2%)
Query: 247 RFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN---LFSSRRYSEACSAYGE 303
++ AV K ++ + N R Y++A +
Sbjct: 30 KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 89
Query: 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWS 363
L DS N R M +E++ D L + P A L+ + +K +
Sbjct: 90 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149
Query: 364 EAVR 367
E R
Sbjct: 150 ERDR 153
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.4 bits (122), Expect = 3e-08
Identities = 26/158 (16%), Positives = 40/158 (25%), Gaps = 23/158 (14%)
Query: 45 AVDA---EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEA 101
D K AG G F +A + A+ +
Sbjct: 5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV--------- 55
Query: 102 VSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHL--CFPGHHPDPNELLKLQSFEK 159
A L AH A G+ L H +L +
Sbjct: 56 ---EPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY 112
Query: 160 HLNRCAES-RKIGDWKTVLRETDAAIAIGVDSSPQLVA 196
+R +++ KT L + +G+D P L A
Sbjct: 113 LSDRQSDALGAYRRVKTTLAD-----DLGIDPGPTLRA 145
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 22/122 (18%)
Query: 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----------------------LYCN 317
+T G + ++ R+ +A L+ + +
Sbjct: 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72
Query: 318 RAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377
+A G I + P + + R S+A+ Y ++ L
Sbjct: 73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 132
Query: 378 GD 379
D
Sbjct: 133 DD 134
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 5e-08
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 16/150 (10%)
Query: 264 SNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAY----------------GEGLKY 307
++V++ V + + + GN F S+ + A Y +G K
Sbjct: 13 ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 72
Query: 308 DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVR 367
N C KM W+ +++ C AL I P+ TKAL RRA + L + +A+
Sbjct: 73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 132
Query: 368 DYEALRRELPGDNEVAESLHNAQVALKKSR 397
D + + P D + L + +K +
Sbjct: 133 DLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 50/138 (36%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMS----------------PENAAYRSNRAAT 91
+E++K GN ++ N+ A+K Y K + P + N A
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 92 LT----------------------------------ALGRLTEAVSDCEEAVRLDPGYNR 117
L +A++D ++A + P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 118 AHQRLASLYFRLGQVENA 135
L + ++ ++
Sbjct: 147 IQAELLKVKQKIKAQKDK 164
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 50.0 bits (118), Expect = 7e-08
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI----------------LYCNR 318
V+ + GN F +EA Y E L + + N
Sbjct: 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73
Query: 319 AICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378
A C++K + +I+ + L+I N KAL + V+N G EA + P
Sbjct: 74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133
Query: 379 DNEVAESLHNAQVALKKSR 397
+ ++ S LK++R
Sbjct: 134 NLDIRNSYELCVNKLKEAR 152
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----------------AAYRSNRAAT 91
A ++K GNE ++K EA+ Y +A+ + N A
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 92 LTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNEL 151
+A+ + +++D +A +L G +E A+ +L +PN L
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK-AASLNPNNL 135
Query: 152 LKLQSFEKHLNRCAESRK 169
S+E +N+ E+RK
Sbjct: 136 DIRNSYELCVNKLKEARK 153
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 7e-08
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Query: 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR-LTEAVSDCEEAVRLDP 113
+ R A KL AI ++ N R L +L + L E ++ + P
Sbjct: 50 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109
Query: 114 GYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPN 149
+ L L + + N
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 26/271 (9%), Positives = 67/271 (24%), Gaps = 22/271 (8%)
Query: 65 VEALKLYD-----KAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119
++ + D I S + A L R A +A+ L+
Sbjct: 21 IDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW 80
Query: 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRE 179
L L + + + + ++++ +R + D L
Sbjct: 81 HFRRVLLKSLQKDLHEEMNYITAIIE------EQPKNYQVWHHRRVLVEWLRDPSQELEF 134
Query: 180 TDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKL 239
+ + + + ++ + + K + + + +
Sbjct: 135 IADILNQDAKNYHA-WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 193
Query: 240 MFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNV----------KMVVRARTRGNNLF 289
E V + L N + L + ++ + +
Sbjct: 194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHS 253
Query: 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAI 320
S + Y + L+ N N+A+
Sbjct: 254 SPYLIAFLVDIYEDMLENQCDNKEDILNKAL 284
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEE 107
AEE+K N+ ++ ++ A+K Y +AI ++P NA Y NR+ A+ D
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 108 AVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAES 167
A+ LD Y + + R A+ LG+ A P++ + + C +
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRD-YETVVKVKPHD----KDAKMKYQECNKI 124
Query: 168 RKIGDWKTVLRETDAAIAI 186
K ++ + + ++
Sbjct: 125 VKQKAFERAIAGDEHKRSV 143
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRI 341
+ +GN S +A Y E +K D +N +LY NR+ ++K G ++ + ED + +
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66
Query: 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390
+P++ K R+A + E L R+ EA R YE + + ++ E L N +
Sbjct: 67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 7e-07
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 34/115 (29%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRS--------------------- 86
E+K GN+ GN +AL+ Y +AI + P N S
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 87 -------------NRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128
+AA L L R EA EE ++ + + + L ++ R
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Score = 47.5 bits (112), Expect = 2e-07
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 408 GEVEEISSLEKFKA----AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
G+V +++ +K S + +V F + C+ I+P L ++P V F KV
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
DV+E A+A+ V +PTF K+G+ + + + L
Sbjct: 64 DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPT 105
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 408 GEVEEISSLEKFKA----AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
G+V ++E + A S + +V F + C I+PF L + P V F KV
Sbjct: 6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
D +E ++A ++ +PTF K G+ L +++ L+
Sbjct: 66 DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQS 107
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Score = 44.4 bits (104), Expect = 2e-06
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 417 EKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSE 475
F+ AI LV F A C ++P + + V K++V+E+
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 476 GVRTVPTFKIYKNGEKLKEMI 496
G+ ++PT ++K GE +K++I
Sbjct: 68 GIMSIPTLILFKGGEPVKQLI 88
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 275 VKMVVRARTRGNNLFSSRRYSEACSAY---------------GEGLKYDSYNSILYCNRA 319
++ + RG F +Y +A Y E K + + N A
Sbjct: 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 69
Query: 320 ICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGD 379
+C K+ + +IE CN AL + N K L RR ++ + + A D++ + + P +
Sbjct: 70 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129
Query: 380 NEVAESLHNAQVALKKSR 397
L Q +++
Sbjct: 130 KAAKTQLAVCQQRIRRQL 147
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 49/133 (36%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAAT---------------- 91
+ VK G +++G + +AL Y K +S +++ + A
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 92 ---------------------------------LTALGRLTEAVSDCEEAVRLDPGYNRA 118
A+ A +D ++ ++L P A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 119 HQRLASLYFRLGQ 131
+LA R+ +
Sbjct: 133 KTQLAVCQQRIRR 145
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-------RLTE 100
AE+ G Y + ++ ++A+ E ++ + L L L +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 101 AVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ 131
A+ ++ + LDP + RA+ L + + +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.001
Identities = 8/84 (9%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 285 GNNLFSSRRYSEACSAYGEGLKYDSYNSIL-------YCNRAICWSKMGLWENSIEDCNV 337
G ++ Y + L+ I + + G + ++
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 338 ALRIQPNYTKALLRRAVSNEKLGR 361
L + P + +A + +
Sbjct: 72 LLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 40/266 (15%), Positives = 67/266 (25%), Gaps = 30/266 (11%)
Query: 66 EALKLYDKAISMS----PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQR 121
L ++ ++ E A R +LG A +D +A+ + P
Sbjct: 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76
Query: 122 LASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETD 181
L + G + A L HLNR G K +
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLE-------LDPTYNYAHLNRGIALYYGGRDKLAQDDLL 129
Query: 182 AAIAI-GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240
A D L AE L Q ++ E + + L
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN------IVEFYLG 183
Query: 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSA 300
+ E + A L E L G S A +
Sbjct: 184 NISEQTLMERLKADATDNTSLAEHLSETNFYL------------GKYYLSLGDLDSATAL 231
Query: 301 YGEGLKYDSYNSILYCNRAICWSKMG 326
+ + + +N + + + S +G
Sbjct: 232 FKLAVANNVHNFVEHRYALLELSLLG 257
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 11/76 (14%), Positives = 21/76 (27%)
Query: 56 NEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY 115
+ + S++ + +LG L A + + AV +
Sbjct: 183 GNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242
Query: 116 NRAHQRLASLYFRLGQ 131
H+ LGQ
Sbjct: 243 FVEHRYALLELSLLGQ 258
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Score = 41.0 bits (95), Expect = 3e-05
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 408 GEVEEISSLEKFKA----AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFK 462
G V I S + A +V F C+ I+P L Y V F K
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 463 VDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
VDV+ A+A++ G+ +PTF +YK+G K +++ S L+
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKA 104
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (95), Expect = 2e-04
Identities = 33/235 (14%), Positives = 55/235 (23%), Gaps = 21/235 (8%)
Query: 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMS------PENAAYRSNRAATLTALGRLTEA 101
A+ +A + A + KA E + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 102 VSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHL 161
V E A+++ + +R A+ F LG++ H +
Sbjct: 97 VDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155
Query: 162 NRCAESRKIGDWKTVLRETDAAIAI-------------GVDSSPQLVACKAEAHLKLHQN 208
K D K + + A I S K L
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215
Query: 209 EDADSCLSNMPKFEHYSPPS-QVKFLVWLLKLMFNISELRFENAVSSAEKAGLLD 262
A L + S + FL L+ + + + LD
Sbjct: 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 407 SGEVEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKV 463
+ V ++ ++ + ++ F C+ ISP + L ++ V KV
Sbjct: 4 AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKV 63
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505
DV+E IA + ++PTF KNG K++E + + LED
Sbjct: 64 DVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLED 105
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 4e-04
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 17/100 (17%)
Query: 412 EISSLEKFKAAISSPGVSLVHFKEASS---------EKCEEISPFVNLLCVRYP-YVHFF 461
+S E+F A+ + S C + P V F
Sbjct: 5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI 64
Query: 462 KVDVEESLAI-------AKSEGVRTVPTFKIYKNGEKLKE 494
V E K+ V VPT Y +KL E
Sbjct: 65 YCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVE 104
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 5e-04
Identities = 7/119 (5%), Positives = 30/119 (25%), Gaps = 7/119 (5%)
Query: 243 ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYG 302
+S + + + R+
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT------RYNDDIRKGIVLLEELL 63
Query: 303 EGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361
+ ++ A+ ++ +E +++ L+ +P +A + ++ + +
Sbjct: 64 PKGSKEEQRDYVF-YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.004
Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 53 RAGNEMYRKGNFVEALKLYDKAISMSPEN--AAYRSNRAATLTALGRLTEAVSDCEEAVR 110
+ + + L ++ + + Y A L +A+ ++
Sbjct: 41 WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 100
Query: 111 LDPGYNRAHQRLASLY 126
+P N+A + +
Sbjct: 101 TEPQNNQAKELERLID 116
|
| >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Alkylsulfatase-like domain: Alkylsulfatase SdsA1 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.1 bits (93), Expect = 6e-04
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEA 101
AE + Y +G + +++ ++ + P+N A R +A L LG E
Sbjct: 429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 483
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Score = 37.1 bits (85), Expect = 8e-04
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 406 MSGEVEEISSLEKFKAAISSPG--VSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKV 463
+ G+V E++ + F + + G ++ C+ ++P L Y V F K+
Sbjct: 4 IVGKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKL 62
Query: 464 DVEESL-AIAKSEGVRTVPTFKIYKNGEKLKEMI 496
D + +AK G+R VPTFKI K + E+
Sbjct: 63 DCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 96
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 36.9 bits (85), Expect = 0.001
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 404 MKMSGEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVH--FF 461
+ + E S+++ + + GV L+ + + + + L +P
Sbjct: 9 LTRGWQPVEASTVDDWIKRVGD-GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVA 67
Query: 462 KVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
D+E+S AI VR P ++ +G+ +
Sbjct: 68 VADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALS 102
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 407 SGEVEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKV 463
S + + + + AI V ++ F C ++ + + + + + V
Sbjct: 1 SYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLV 60
Query: 464 DVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
D+ E K + T + + + +
Sbjct: 61 DITEVPDFNKMYELYDPCTVMFFFRNKHIMIDL 93
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVD 464
V + F A+++ LV F C+ ++P + + KVD
Sbjct: 8 HVLVLRK-SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 465 VEESLAIAKSEGVRTVPTFKIYKNGEKLK 493
E +A+ GVR PT K ++NG+
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTAS 95
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.3 bits (80), Expect = 0.004
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 408 GEVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY--PYVHFFKVDV 465
V ++++ + F I S + L F C+ ++P + ++D
Sbjct: 10 SAVVKLAT-DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC 68
Query: 466 EESLAIAKSEGVRTVPTFKIYKNGEKLKEMI 496
E+ + + P+ KI+KN + +
Sbjct: 69 TENQDLCMEHNIPGFPSLKIFKNSDVNNSID 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.93 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.89 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.89 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.89 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.88 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.88 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.88 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.87 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.87 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.87 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.87 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.86 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.85 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.8 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.78 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.78 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.78 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.78 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.76 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.73 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.71 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.71 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.7 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.7 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.66 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.65 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.62 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.62 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.62 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.61 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.59 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.59 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.53 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.51 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.46 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.45 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 99.4 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 99.39 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.35 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.34 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.33 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.32 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.31 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.3 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.29 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.19 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.17 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.14 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.08 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.08 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.08 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.04 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.96 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 98.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.9 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.88 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 98.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.45 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.37 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.33 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 98.1 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 98.09 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 98.05 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 98.03 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 97.99 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.95 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 97.95 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.89 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 97.89 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 97.89 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 97.83 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 97.82 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 97.72 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 97.72 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 97.69 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 97.67 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 97.67 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 97.65 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 97.46 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 97.36 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 97.36 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.36 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 97.33 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 97.29 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 97.26 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 97.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.2 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.16 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 96.93 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 96.76 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 96.72 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 96.72 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 96.63 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 96.5 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 96.47 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 96.36 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 96.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.09 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 95.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.8 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 95.78 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 95.64 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 95.51 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 95.32 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 93.65 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 92.9 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 90.22 | |
| d1t4za_ | 105 | Adaptive-response sensory-kinase SasA, N-terminal | 89.23 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 87.18 | |
| d1hyua3 | 102 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 87.02 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.24 | |
| d1r5pa_ | 90 | Circadian oscillation regulator KaiB {Cyanobacteri | 80.31 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-37 Score=302.74 Aligned_cols=323 Identities=15% Similarity=0.096 Sum_probs=288.7
Q ss_pred HHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC
Q 009096 52 KRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ 131 (543)
Q Consensus 52 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (543)
+.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++.+|..+|.++..+|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC-CCC-hHHHhHH-------------------------------------------------------
Q 009096 132 VENARHHLCFPGH-HPD-PNELLKL------------------------------------------------------- 154 (543)
Q Consensus 132 ~~~A~~~~~~a~~-~~~-~~~~~~~------------------------------------------------------- 154 (543)
+++|+..+.++.. .+. .......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 9999998877765 221 1111000
Q ss_pred ----HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHH
Q 009096 155 ----QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQV 230 (543)
Q Consensus 155 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 230 (543)
.....+..++..+...|++++|...++++++.+|+. ..++..+|.++...|++++|+..++++....|.....+
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~- 240 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH- 240 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc-HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH-
Confidence 012345667788889999999999999999999987 78899999999999999999999999999988885543
Q ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 009096 231 KFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 231 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 310 (543)
..+|.++...|++++|+..|+++++++|+++.++ ..+|.++...|++++|++.|++++...|.
T Consensus 241 -----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 303 (388)
T d1w3ba_ 241 -----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY------------CNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHhhhccCCc
Confidence 4449999999999999999999999999998875 34799999999999999999999999999
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQ 390 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 390 (543)
+...+..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|++++++..++.+.
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHH
Q 009096 391 VAL 393 (543)
Q Consensus 391 ~~l 393 (543)
..+
T Consensus 384 ~~~ 386 (388)
T d1w3ba_ 384 KEM 386 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-34 Score=278.53 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=278.0
Q ss_pred ccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHH
Q 009096 29 SSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEA 108 (543)
Q Consensus 29 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (543)
....|...++++++.+|.++++++.+|.+++..|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+..+
T Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~ 93 (388)
T d1w3ba_ 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence 34457777888889999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HhcC--------------------------------------------------------------------CCChhHHH
Q 009096 109 VRLD--------------------------------------------------------------------PGYNRAHQ 120 (543)
Q Consensus 109 l~~~--------------------------------------------------------------------p~~~~~~~ 120 (543)
+..+ |+++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (388)
T d1w3ba_ 94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHH
Confidence 6544 44566788
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
.+|.++...|++++|...+++++. .|+. ...+..++.++...|++++|+..+.++....|.. ...+..+|
T Consensus 174 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 244 (388)
T d1w3ba_ 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNF--------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-AVVHGNLA 244 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred hhcccccccCcHHHHHHHHHHHHHhCccc--------HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-HHHHHHHH
Confidence 889999999999999999998876 3332 2457788999999999999999999999998877 77888899
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 279 (543)
.++...|++++|+..|+++++.+|+++.. +..+|.++...|++++|+..+++++...|.+...+.
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------- 309 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDA------YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN--------- 309 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHH------HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh---------
Confidence 99999999999999999999999998654 444599999999999999999999999999988753
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
.+|.++...|++++|++.|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++++++.++|.+|.++
T Consensus 310 ---~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 310 ---NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp ---HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009096 360 GR 361 (543)
Q Consensus 360 g~ 361 (543)
||
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.4e-29 Score=235.15 Aligned_cols=260 Identities=17% Similarity=0.112 Sum_probs=210.1
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLY 126 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (543)
+....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...|..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 009096 127 FRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLH 206 (543)
Q Consensus 127 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~ 206 (543)
...|++++|+..+++++ ...|.... .........
T Consensus 98 ~~~~~~~~A~~~~~~~~-----------------------------------------~~~~~~~~-~~~~~~~~~---- 131 (323)
T d1fcha_ 98 TNESLQRQACEILRDWL-----------------------------------------RYTPAYAH-LVTPAEEGA---- 131 (323)
T ss_dssp HHTTCHHHHHHHHHHHH-----------------------------------------HTSTTTGG-GCC----------
T ss_pred cccccccccccchhhHH-----------------------------------------HhccchHH-HHHhhhhhh----
Confidence 99999998888775443 33333210 000000000
Q ss_pred ChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHH
Q 009096 207 QNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGN 286 (543)
Q Consensus 207 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~ 286 (543)
....... .......+...+.+.+|+..|.+++..+|+...... +..+|.
T Consensus 132 ----------~~~~~~~-----------~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~----------~~~l~~ 180 (323)
T d1fcha_ 132 ----------GGAGLGP-----------SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV----------QCGLGV 180 (323)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH----------HHHHHH
T ss_pred ----------hhccccc-----------chhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc----------chhhHH
Confidence 0000000 000022344567788899999999999988654332 134799
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHH
Q 009096 367 RDYEALRRELPGDNEVA 383 (543)
Q Consensus 367 ~~~~~al~~~p~~~~~~ 383 (543)
..|++|++++|++..+.
T Consensus 261 ~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPR 277 (323)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhCCcChhhh
Confidence 99999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=2.1e-26 Score=218.07 Aligned_cols=273 Identities=10% Similarity=-0.006 Sum_probs=237.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC----------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 009096 60 RKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG----------RLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRL 129 (543)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (543)
..+..++|+.+++++++.+|++..+|..++.++..++ ++++|+..++++++.+|++..+|..+|.++...
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence 3344589999999999999999999988888766654 478999999999999999999999999998765
Q ss_pred CCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChh
Q 009096 130 GQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNE 209 (543)
Q Consensus 130 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~ 209 (543)
++ +++++|+..+.++++.+|......+...+.++...+.++
T Consensus 121 ~~---------------------------------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 121 PE---------------------------------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp SS---------------------------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred cc---------------------------------------ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence 43 345566667788888888885666677889999999999
Q ss_pred HHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHH
Q 009096 210 DADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLF 289 (543)
Q Consensus 210 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~ 289 (543)
+|+..++++++.+|.+.. +|..+|.++..+|++++|+..+.+++...|..... ...+.
T Consensus 162 ~Al~~~~~~i~~~p~~~~------a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~ 219 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYS------SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL----------------VQNAF 219 (334)
T ss_dssp HHHHHHHTTTTTTCCCHH------HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHH----------------HHHHH
T ss_pred HHHHHHHHHHHcCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHH----------------HHHHH
Confidence 999999999999999854 55566999999999999999999888887765543 33456
Q ss_pred hcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 009096 290 SSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDY 369 (543)
Q Consensus 290 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 369 (543)
..+..++|...|.+++...|.+...+..+|.++...+++++|+..+.+++..+|++..++..+|.++...|++++|+++|
T Consensus 220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHH
Q 009096 370 EALRRELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 370 ~~al~~~p~~~~~~~~l~~~~~~l 393 (543)
+++++++|.+...+..+......-
T Consensus 300 ~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 300 STLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHhHh
Confidence 999999999999998886655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.2e-26 Score=214.42 Aligned_cols=248 Identities=13% Similarity=0.002 Sum_probs=190.4
Q ss_pred ccccCCCCCCCCccccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHH
Q 009096 27 SCSSNINNNNNNVKTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCE 106 (543)
Q Consensus 27 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (543)
.+....|+..++++++.+|.++++|+.+|.++...|++++|+..|+++++++|++...+..+|.+|...|++++|++.++
T Consensus 32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence 34445688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHc
Q 009096 107 EAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAI 186 (543)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 186 (543)
+++...|.....+.......... .+... ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------------~~------------------------ 141 (323)
T d1fcha_ 112 DWLRYTPAYAHLVTPAEEGAGGA-----GLGPS---------------------KR------------------------ 141 (323)
T ss_dssp HHHHTSTTTGGGCC-----------------------------------------C------------------------
T ss_pred hHHHhccchHHHHHhhhhhhhhc-----ccccc---------------------hh------------------------
Confidence 99999998765433221111100 00000 00
Q ss_pred CCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcH
Q 009096 187 GVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNV 266 (543)
Q Consensus 187 ~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 266 (543)
....+...+.+.+|+..+.++++.+|+.... ..+..+|.++...|++++|+..|++++..+|++.
T Consensus 142 -----------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 206 (323)
T d1fcha_ 142 -----------ILGSLLSDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 206 (323)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -----------hHHHHHHhhHHHHHHHHHHHHHHHhhccccc----ccchhhHHHHHHHHHHhhhhcccccccccccccc
Confidence 0111222333444555555555555544332 2334458888999999999999999999999998
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 267 EIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
.++ ..+|.++...|++++|++.|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 207 ~~~------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 207 LLW------------NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred cch------------hhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 875 34799999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHH
Q 009096 347 KALLR 351 (543)
Q Consensus 347 ~~~~~ 351 (543)
.++..
T Consensus 275 ~~~~~ 279 (323)
T d1fcha_ 275 GPRGE 279 (323)
T ss_dssp -----
T ss_pred hhhhh
Confidence 65433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-23 Score=195.98 Aligned_cols=253 Identities=12% Similarity=0.009 Sum_probs=193.6
Q ss_pred cccccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhH
Q 009096 40 KTSNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALG-RLTEAVSDCEEAVRLDPGYNRA 118 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 118 (543)
.+..+|...+++..+|.++.+.+.+++|+.+++++++++|++..+|+++|.++..+| ++++|+..++++++.+|++..+
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a 114 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH
Confidence 566789999999999999999999999999999999999999999999999999987 5999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009096 119 HQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACK 198 (543)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 198 (543)
|..+|.++..+|++++|+..+ .++++.+|.+ ..
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~-----------------------------------------~kal~~dp~n-~~----- 147 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YH----- 147 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HH-----
T ss_pred HHHHhHHHHhhccHHHHHHHH-----------------------------------------hhhhhhhhcc-hH-----
Confidence 999999988887776666554 5566666665 33
Q ss_pred HHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHH
Q 009096 199 AEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMV 278 (543)
Q Consensus 199 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 278 (543)
+|..+|.++...|++++|+..++++++++|.+..+|.
T Consensus 148 -----------------------------------a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~-------- 184 (315)
T d2h6fa1 148 -----------------------------------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN-------- 184 (315)
T ss_dssp -----------------------------------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH--------
T ss_pred -----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH--------
Confidence 3444466666667777777777777777777777652
Q ss_pred HHHHHHHHHHHhcCC------HHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHH
Q 009096 279 VRARTRGNNLFSSRR------YSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY--TKALL 350 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 350 (543)
++|.++...+. +++|++.+.++++++|++..+|++++.++...| .+++...+++++++.|+. +.++.
T Consensus 185 ----~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 259 (315)
T d2h6fa1 185 ----QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIA 259 (315)
T ss_dssp ----HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHH
T ss_pred ----HHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHH
Confidence 35666655554 678999999999999999999999988866544 688888999998887764 55666
Q ss_pred HHHHHHHHc--cCHHHHHHHHHHHHh--------cCCCChHHHHHHH
Q 009096 351 RRAVSNEKL--GRWSEAVRDYEALRR--------ELPGDNEVAESLH 387 (543)
Q Consensus 351 ~la~~~~~~--g~~~~A~~~~~~al~--------~~p~~~~~~~~l~ 387 (543)
.++.++... ++.+.+...++++++ .+|-....|..+.
T Consensus 260 ~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~ 306 (315)
T d2h6fa1 260 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306 (315)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777776543 444444444444443 3554444454443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.6e-22 Score=185.89 Aligned_cols=213 Identities=15% Similarity=0.025 Sum_probs=183.1
Q ss_pred HhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-HHHHHHHhcCCCCCCChHHHhH
Q 009096 75 ISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQ-VENARHHLCFPGHHPDPNELLK 153 (543)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~ 153 (543)
+..+|+..+++..+|.++.+.+.+++|+..++++++++|++..+|..+|.++..+|+ +++|+..
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~--------------- 100 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY--------------- 100 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH---------------
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHH---------------
Confidence 556788899999999999999999999999999999999999999999999887653 5555544
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHH
Q 009096 154 LQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFL 233 (543)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 233 (543)
++++++.+|++ ..
T Consensus 101 --------------------------~~~al~~~p~~-~~---------------------------------------- 113 (315)
T d2h6fa1 101 --------------------------ITAIIEEQPKN-YQ---------------------------------------- 113 (315)
T ss_dssp --------------------------HHHHHHHCTTC-HH----------------------------------------
T ss_pred --------------------------HHHHHHHHHhh-hh----------------------------------------
Confidence 45666666665 22
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
+|..+|.++..+|++++|+..++++++++|++..+| ..+|.++...|++++|+..|+++++++|.+..
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~------------~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~ 181 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW------------QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 181 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH------------HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH
Confidence 344447777888888899999999999999999886 34799999999999999999999999999999
Q ss_pred HHhHHHHHHHHccC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 314 LYCNRAICWSKMGL------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 314 ~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+|+++|.++...+. +++|+..+.++++++|++..+|..++.++...| .+++...+++++++.|+....
T Consensus 182 a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~ 255 (315)
T d2h6fa1 182 VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSP 255 (315)
T ss_dssp HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCH
Confidence 99999999988776 689999999999999999999999999876554 688999999999999876443
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.89 E-value=2.7e-23 Score=157.89 Aligned_cols=101 Identities=28% Similarity=0.505 Sum_probs=95.9
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
+..+++.+.|.+++..+++++++||++||++|+.+.|.+++++++++++.|+++|++++++++++|+|.++||+++|++|
T Consensus 2 v~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G 81 (103)
T d1syra_ 2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG 81 (103)
T ss_dssp CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT
T ss_pred cEEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEEEECC
Confidence 34567888999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHHhc
Q 009096 490 EKLKEMINPSHQFLEDSANLA 510 (543)
Q Consensus 490 ~~~~~~~g~~~~~~~~~~~~~ 510 (543)
+++.++.|.++++|.++|+++
T Consensus 82 ~~v~~~~G~~~~~l~~~i~k~ 102 (103)
T d1syra_ 82 SSVDTLLGANDSALKQLIEKY 102 (103)
T ss_dssp EEEEEEESCCHHHHHHHHHTT
T ss_pred EEEEEEeCcCHHHHHHHHHhh
Confidence 999999999999999999986
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.2e-23 Score=157.26 Aligned_cols=102 Identities=29% Similarity=0.521 Sum_probs=94.2
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.|++.+. .+++++++||++||++|+.+.|.++++.++++++.|+++|++++++++.+|+|+++||+++|+
T Consensus 2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~ 81 (105)
T d2ifqa1 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81 (105)
T ss_dssp CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence 456777888888874 367899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
||+++.++.|.++++|+++|++++
T Consensus 82 ~G~~v~~~~G~~~~~l~~~i~~~l 105 (105)
T d2ifqa1 82 KGQKVGEFSGANKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCCHHHHHHHHHhhC
Confidence 999999999999999999999764
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4e-23 Score=157.05 Aligned_cols=102 Identities=22% Similarity=0.423 Sum_probs=94.4
Q ss_pred eEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+.+.+.|++.+. .++.++++||++||++|+.+.|.+++++++++++.|+++|++++++++++|+|.++||+++|+
T Consensus 3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (107)
T d1gh2a_ 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEEEEE
Confidence 456777888888774 367899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+++.+++|.++++|+++|++++
T Consensus 83 ~G~~v~~~~G~~~~~l~~~i~k~l 106 (107)
T d1gh2a_ 83 NKVRIDQYQGADAVGLEEKIKQHL 106 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHhh
Confidence 999999999999999999999864
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.89 E-value=2.8e-23 Score=159.61 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=96.9
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.++.+.+.|.+++..++.++++||++||++|+.+.|.+++++++++++.|+++|+|++++++++|||.++||+++|+|
T Consensus 9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~ 88 (113)
T d1r26a_ 9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARS 88 (113)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCCCEEEEEEC
Confidence 36678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHHhcC
Q 009096 489 GEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 489 g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+++.++.|.+++.+++.|++++
T Consensus 89 G~~v~~~~G~~~~~l~~~l~~~i 111 (113)
T d1r26a_ 89 GKMLGHVIGANPGMLRQKLRDII 111 (113)
T ss_dssp TEEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHh
Confidence 99999999998888888888654
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.88 E-value=9.3e-23 Score=157.63 Aligned_cols=105 Identities=25% Similarity=0.444 Sum_probs=95.4
Q ss_pred CCeEEeehhhhhhhcc----CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFKAAI----SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i----~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.|++.+ ..+++++|+||++||++|+.+.|.++++++.++++.|+++|+++++.++++|+|+++||+
T Consensus 6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~Pt~ 85 (114)
T d1xfla_ 6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTF 85 (114)
T ss_dssp SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeEEE
Confidence 4456666777776654 557899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
++|+||+++.++.|.++++|+++|+++++
T Consensus 86 ~~~~~G~~v~~~~G~~~~~l~~~i~k~la 114 (114)
T d1xfla_ 86 MFLKEGKILDKVVGAKKDELQSTIAKHLA 114 (114)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred EEEECCEEEEEEeCcCHHHHHHHHHHhhC
Confidence 99999999999999999999999998864
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.88 E-value=1.7e-22 Score=155.15 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=92.0
Q ss_pred eEEeehhhhhhh-ccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKA-AISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~-~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+++ +.|++ ++..+++++|.||++||++|+.+.|.+++++.++++ +.|+++|+++++.++++|+|+++||+++|+
T Consensus 4 V~~lt~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~ 82 (108)
T d1thxa_ 4 VITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 82 (108)
T ss_dssp EEECCG-GGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceECCH-HHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEEE
Confidence 455655 45554 667788999999999999999999999999999986 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|+++.++.|. ++++|.++|+++++
T Consensus 83 ~g~~v~~~~G~~~~~~l~~~i~~~Ln 108 (108)
T d1thxa_ 83 GEQILDSTEGVISKDKLLSFLDTHLN 108 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence 99999999999 99999999998754
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.88 E-value=7.6e-23 Score=156.21 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=91.7
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
+.+.|++++.++++++|+||++||++|+.+.|.+++++.++++ +.|+++|+++++.++++|+|.++||+++|++|+++.
T Consensus 6 t~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~~ 85 (105)
T d1nw2a_ 6 TDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVK 85 (105)
T ss_dssp CTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEE
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEEE
Confidence 4466888998999999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHHhcC
Q 009096 494 EMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 494 ~~~g~-~~~~~~~~~~~~~ 511 (543)
++.|. +.++|+++|++++
T Consensus 86 ~~~G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 86 QLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEESCCCHHHHHHHTTTTC
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 99999 9999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=1.5e-23 Score=198.19 Aligned_cols=267 Identities=7% Similarity=-0.121 Sum_probs=226.1
Q ss_pred CCCCCCCCccccccccCHHHHHHHhhHHHh----------cCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCC--H
Q 009096 31 NINNNNNNVKTSNVAVDAEEVKRAGNEMYR----------KGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGR--L 98 (543)
Q Consensus 31 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~ 98 (543)
..|+..+.+++..+|.+..+|..++..+.. .|++++|+.+++++++.+|++..+|+.+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 346677888899999999998777766554 3458999999999999999999999999999988775 8
Q ss_pred HHHHHHHHHHHhcCCCChhHHH-HHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQ-RLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVL 177 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (543)
++|+..+.++++.+|.+..++. .+|.++...+++++|+..+++++.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--------------------------------- 172 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--------------------------------- 172 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---------------------------------
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH---------------------------------
Confidence 9999999999999999988864 567788888888888877766654
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 178 RETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 178 ~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
.+|.+ ..++..+|.++..+|++++|+..+.+++...|.... ....+...+..+++...+.+
T Consensus 173 --------~~p~~-~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 173 --------RNFSN-YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE----------LVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp --------TTCCC-HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH----------HHHHHHHHCSSCSHHHHHHH
T ss_pred --------cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH----------HHHHHHHhcchhHHHHHHHH
Confidence 45555 677888999999999999998888888777665421 13445677888999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNV 337 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 337 (543)
++..+|.+...+. .+|.++...+++.+|+..+.+++..+|.+..++..+|.++..+|++++|+++|++
T Consensus 234 ~l~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 234 WLLGRAEPLFRCE------------LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp HHHSCCCCSSSCC------------CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHhCcchhhHHH------------HHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998876642 3688899999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccC
Q 009096 338 ALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 338 al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+++++|.+...|..++..+.-...
T Consensus 302 ai~ldP~~~~y~~~L~~~~~~e~~ 325 (334)
T d1dcea1 302 LKAVDPMRAAYLDDLRSKFLLENS 325 (334)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHhHhhH
Confidence 999999999999999888875433
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.7e-22 Score=155.21 Aligned_cols=104 Identities=19% Similarity=0.337 Sum_probs=92.3
Q ss_pred CeEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 409 EVEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.+.++++.++...++..+++++|+||++||++|+.+.|.+.+++.++.+ +.++++|+++++.++.+|+|.++||+++|+
T Consensus 3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~ 82 (108)
T d2trxa_ 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82 (108)
T ss_dssp TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEE
T ss_pred CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEEE
Confidence 4566666444344667789999999999999999999999999988754 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 488 NGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
+|+++.++.|. ++++|.++|+++++
T Consensus 83 ~G~~v~~~~G~~~~~~l~~~i~~~Ls 108 (108)
T d2trxa_ 83 NGEVAATKVGALSKGQLKEFLDANLA 108 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence 99999999999 99999999998753
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.87 E-value=1.1e-22 Score=156.99 Aligned_cols=105 Identities=26% Similarity=0.441 Sum_probs=93.9
Q ss_pred CCeEEeehhhhhh----hccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 408 GEVEEISSLEKFK----AAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 408 ~~~~~~~~~~~~~----~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
+.+..+.+.+.++ +++..+++++|+||++||++|+.+.|.+++++++++++.|+.+|+++++.++.+|+|+++||+
T Consensus 4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~ 83 (113)
T d1ti3a_ 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccceE
Confidence 3455666655444 445678899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
++|+||+++.++.|.++++|.++|+++.+
T Consensus 84 ~~~k~G~~v~~~~G~~~~~l~~~i~k~as 112 (113)
T d1ti3a_ 84 IFLKDGKLVDKTVGADKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEETTEEEEEEECCCTTHHHHHHHHHHH
T ss_pred EEEECCEEEEEEcCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1e-20 Score=180.03 Aligned_cols=297 Identities=14% Similarity=0.014 Sum_probs=222.6
Q ss_pred cccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-----hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 009096 42 SNVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-----AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY- 115 (543)
Q Consensus 42 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 115 (543)
..++..++.....|.+++..|++++|+..|+++++..|++ ..++..+|.++...|++++|+..|+++++..|..
T Consensus 6 ~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 6 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 4456678888889999999999999999999999998876 3578889999999999999999999998875432
Q ss_pred -----hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 116 -----NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 116 -----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
..++..++.++...|++..|...+.+++. ............
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~----------------------------------~~~~~~~~~~~~ 131 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------------------LINEQHLEQLPM 131 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHHHTTCTTSTH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------HhHhcccchhhH
Confidence 34566777777777777777776644321 000000000011
Q ss_pred CHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH
Q 009096 191 SPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS 270 (543)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 270 (543)
....+..+|.++...|+++.+...+.++....+....... ...+...+..+...+++.++...+.++....+.......
T Consensus 132 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 210 (366)
T d1hz4a_ 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 210 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCc
Confidence 1234556788888888888888888888776666544333 335566688899999999999999988755433211100
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----hhHHhHHHHHHHHccCHHHHHHHHHHHHhh-----
Q 009096 271 VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----SILYCNRAICWSKMGLWENSIEDCNVALRI----- 341 (543)
Q Consensus 271 ~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 341 (543)
. ....+...|..+...|++++|...+++++...|.+ ...+.++|.++...|++++|+..+++++..
T Consensus 211 ~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (366)
T d1hz4a_ 211 W-----ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 285 (366)
T ss_dssp H-----HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred h-----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc
Confidence 0 00112347889999999999999999999987765 356778999999999999999999999854
Q ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 009096 342 -QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 342 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 378 (543)
.|....++..+|.++...|++++|++.+++++++.+.
T Consensus 286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 3556688999999999999999999999999998653
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.87 E-value=2.1e-22 Score=154.95 Aligned_cols=105 Identities=29% Similarity=0.486 Sum_probs=95.2
Q ss_pred CCeEEeehhhhhhhcc----CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccE
Q 009096 408 GEVEEISSLEKFKAAI----SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPT 482 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i----~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt 482 (543)
+.+..+.+.+.|++.+ ..+++++|+||++||++|+.+.|.+++++.++++ +.|+.+|++++++++++|+|.++||
T Consensus 2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 81 (112)
T d1ep7a_ 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence 4566777777776665 3478999999999999999999999999999986 9999999999999999999999999
Q ss_pred EEEEECCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 483 FKIYKNGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 483 ~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
+++|+||+++.++.|.++++|+++|+++..
T Consensus 82 ~~~~~~G~~v~~~~G~~~~~l~~~i~k~~a 111 (112)
T d1ep7a_ 82 FHVYKDGVKADDLVGASQDKLKALVAKHAA 111 (112)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHHC
T ss_pred EEEEECCEEEEEEeCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999998754
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.87 E-value=3.2e-22 Score=153.26 Aligned_cols=101 Identities=23% Similarity=0.417 Sum_probs=90.5
Q ss_pred EEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 411 EEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 411 ~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
..+++ +.|++. ..++++++|+||++||++|+.+.|.+.+++.++.+ +.|+++|+|.+++++++|+|+++||+++|+|
T Consensus 4 ~~i~~-~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~ 82 (107)
T d1dbya_ 4 GAVND-DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG 82 (107)
T ss_dssp EEECH-HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred eEecH-HHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence 34444 556554 46678999999999999999999999999998865 9999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 489 GEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 489 g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
|+++.++.|. +.++|.++|+++++
T Consensus 83 G~~v~~~~G~~~~~~l~~~i~~~L~ 107 (107)
T d1dbya_ 83 GKKCETIIGAVPKATIVQTVEKYLN 107 (107)
T ss_dssp SSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred CeEEEEEeCCCCHHHHHHHHHHhhC
Confidence 9999999998 99999999999864
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.87 E-value=4.4e-22 Score=151.73 Aligned_cols=99 Identities=24% Similarity=0.439 Sum_probs=89.0
Q ss_pred Eeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 412 EISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 412 ~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
++++ +.|++. +.+++++++.||++||++|+.+.|.+.++++++++ +.++.+|+++++.++++|+|+++||+++|++|
T Consensus 3 el~d-~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G 81 (104)
T d1fb6a_ 3 DVND-SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG 81 (104)
T ss_dssp ECCT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ECch-hhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEcC
Confidence 3444 445554 46678999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHHhcC
Q 009096 490 EKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 490 ~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+++.++.|. +.++|.++|++++
T Consensus 82 ~~v~~~~G~~~~~~l~~~i~~~L 104 (104)
T d1fb6a_ 82 ERKESIIGAVPKSTLTDSIEKYL 104 (104)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCHHHHHHHHHHhC
Confidence 999999999 9999999999864
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.1e-21 Score=178.27 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcC----CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHH
Q 009096 63 NFVEALKLYDKAISMS----PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHH 138 (543)
Q Consensus 63 ~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (543)
+.+.|+..+++++... |..+.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3444555555555432 223445555566666666666666666666666665555555555555555555544444
Q ss_pred h
Q 009096 139 L 139 (543)
Q Consensus 139 ~ 139 (543)
|
T Consensus 94 ~ 94 (259)
T d1xnfa_ 94 F 94 (259)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.86 E-value=8.7e-22 Score=151.70 Aligned_cols=103 Identities=26% Similarity=0.373 Sum_probs=94.1
Q ss_pred CeEEeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEE
Q 009096 409 EVEEISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKI 485 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 485 (543)
.+..+.+.+.+...+ ..+++++|+||++||++|+.+.|.+++++.++++ +.++.+|+++++.++++|+|.++||+++
T Consensus 6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~ 85 (111)
T d1xwaa_ 6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVF 85 (111)
T ss_dssp CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEEE
Confidence 456777888887766 3577999999999999999999999999999987 9999999999999999999999999999
Q ss_pred EECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 486 YKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 486 ~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
|+||+++.++.|.++++|+++|++++
T Consensus 86 ~~~G~~v~~~~G~~~~~l~~~I~~~l 111 (111)
T d1xwaa_ 86 LKNGVKVEEFAGANAKRLEDVIKANI 111 (111)
T ss_dssp EETTEEEEEEESCCHHHHHHHHHHTC
T ss_pred EECCEEEEEEeCCCHHHHHHHHHhcC
Confidence 99999999999998889999999864
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.86 E-value=1.7e-21 Score=149.43 Aligned_cols=103 Identities=25% Similarity=0.404 Sum_probs=91.0
Q ss_pred CCeEEeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-cHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-SLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-~~~~~~~~~v~~~Pt~~ 484 (543)
+.+.+++. +.|.+.+. .+++++++||++||++|+.+.|.+++++++++++.|+++|+++ +++++++|||.++||++
T Consensus 6 g~v~~~~~-d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~ 84 (112)
T d1f9ma_ 6 GKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFK 84 (112)
T ss_dssp TSEEEECT-TTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEE
T ss_pred eeeEEeCH-HHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCCEEE
Confidence 45666654 45666663 3579999999999999999999999999999999999999975 79999999999999999
Q ss_pred EEECCeEEEEEcCCCHHHHHHHHHhcC
Q 009096 485 IYKNGEKLKEMINPSHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~~~~~g~~~~~~~~~~~~~~ 511 (543)
+|+||+++.++.|.+++++.++|+++.
T Consensus 85 ~~k~G~~v~~~~G~~~~~l~e~i~~~~ 111 (112)
T d1f9ma_ 85 ILKENSVVGEVTGAKYDKLLEAIQAAR 111 (112)
T ss_dssp EEETTEEEEEEESSCHHHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCHHHHHHHHHHcc
Confidence 999999999999998899999998754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.2e-20 Score=171.10 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=94.1
Q ss_pred ccccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 43 NVAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 43 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
.++..+..++.+|.+|...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.++..+
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 111 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 111 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHhcCC
Q 009096 123 ASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a 142 (543)
|.++..+|++++|+..|+++
T Consensus 112 g~~~~~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 112 GIALYYGGRDKLAQDDLLAF 131 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999988888777443
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.7e-20 Score=145.98 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=89.3
Q ss_pred hhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 416 LEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 416 ~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
...++..+.. +++++++||++||++|+.+.|.|+++++++++ +.+++||++++++++++|+|.++||+++|+||+.
T Consensus 24 ~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~~ 103 (132)
T d2hfda1 24 ESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNY 103 (132)
T ss_dssp HHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEETTEE
T ss_pred cccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEcCcE
Confidence 4555555533 45788999999999999999999999999987 6788999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHHhcCCCCC
Q 009096 492 LKEMINP-SHQFLEDSANLAPSPVY 515 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~~~~~~ 515 (543)
+.++.|. +.+++.++|+.++.+.+
T Consensus 104 v~~~~G~~~~~~l~~~i~~ll~~~~ 128 (132)
T d2hfda1 104 RGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_dssp EEEECCCSCHHHHHHHHHHHHSCSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCccc
Confidence 9999998 99999999998876654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.7e-19 Score=136.57 Aligned_cols=113 Identities=28% Similarity=0.481 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..++..|..++..|+|++|+..|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.++..
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNEVAESLHNAQV 391 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 391 (543)
+|++++|+..|+++++++|+++.++..+.++..
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999998887653
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-19 Score=142.91 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=87.6
Q ss_pred EeehhhhhhhccC--CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEEC
Q 009096 412 EISSLEKFKAAIS--SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKN 488 (543)
Q Consensus 412 ~~~~~~~~~~~i~--~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~ 488 (543)
.+.+..++++++. .+++++|.||++||++|+.+.|.+++++.++++ +.|++||+|++++++++|+|.++||+++|++
T Consensus 6 ~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~ 85 (137)
T d1qgva_ 6 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFR 85 (137)
T ss_dssp BCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeC
Confidence 4556777888774 366999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred CeEEEEEcC----------C-CHHHHHHHHHhcCC
Q 009096 489 GEKLKEMIN----------P-SHQFLEDSANLAPS 512 (543)
Q Consensus 489 g~~~~~~~g----------~-~~~~~~~~~~~~~~ 512 (543)
|+.+....| . +.+++.+.|+....
T Consensus 86 g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~ 120 (137)
T d1qgva_ 86 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR 120 (137)
T ss_dssp TEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence 999865544 2 67788888886543
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=4.4e-19 Score=135.71 Aligned_cols=91 Identities=16% Similarity=0.087 Sum_probs=79.0
Q ss_pred hccCCCCce-eeeeeCCCCccccchhHhHHHHHhh----C-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEE
Q 009096 421 AAISSPGVS-LVHFKEASSEKCEEISPFVNLLCVR----Y-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKE 494 (543)
Q Consensus 421 ~~i~~~~~~-lv~f~~~~c~~c~~~~p~l~~l~~~----~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 494 (543)
.+...++++ ++.||++||++|+.+.|.+++++.+ + ..+.+..+|++++++++++|+|.++||++++++|+++.+
T Consensus 9 ~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~~~ 88 (107)
T d1a8la2 9 AIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVE 88 (107)
T ss_dssp HHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEE
T ss_pred HHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEEEE
Confidence 333445555 5579999999999999999999754 3 348999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHHhcC
Q 009096 495 MINP-SHQFLEDSANLAP 511 (543)
Q Consensus 495 ~~g~-~~~~~~~~~~~~~ 511 (543)
+.|. +.+++.++|.+.+
T Consensus 89 ~~G~~~~~~~~~~i~~al 106 (107)
T d1a8la2 89 FEGAYPEKMFLEKLLSAL 106 (107)
T ss_dssp EESCCCHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHhh
Confidence 9998 9999999998764
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=2.5e-19 Score=139.55 Aligned_cols=103 Identities=17% Similarity=0.290 Sum_probs=90.6
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCcccEEEEEE
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~ 487 (543)
+..+ +.+.|++.+..++.++|.||++||++|+.+.|.+++++..+. ++.|++||++++++++.+|+|.++||+++|+
T Consensus 12 v~~l-t~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f~ 90 (119)
T d2b5ea4 12 VVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFK 90 (119)
T ss_dssp CEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cEEc-CHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEEE
Confidence 3344 446678888889999999999999999999999999999884 4999999999999999999999999999999
Q ss_pred CCeEEEE--EcCC-CHHHHHHHHHhcCCC
Q 009096 488 NGEKLKE--MINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 488 ~g~~~~~--~~g~-~~~~~~~~~~~~~~~ 513 (543)
+|+...+ +.|. +.++|.+||+++.+|
T Consensus 91 ~g~~~~~~~y~g~~~~~~l~~fi~k~~~P 119 (119)
T d2b5ea4 91 NSDVNNSIDYEGPRTAEAIVQFMIKQSQP 119 (119)
T ss_dssp TTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred CCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence 9977654 4577 999999999997764
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=8.8e-20 Score=140.68 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=74.1
Q ss_pred hhhhhhccCC--CCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 416 LEKFKAAISS--PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 416 ~~~~~~~i~~--~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
...++..+.. ++++++.|+++|||+|+.+.|.+++++++|++ +.+++||++++++++++|||.++||+++|+||++
T Consensus 18 ~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~ 97 (119)
T d2es7a1 18 ASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKL 97 (119)
T ss_dssp CC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC--
T ss_pred ccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeE
Confidence 3445554433 56888899999999999999999999999987 7889999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHHhcC
Q 009096 492 LKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 492 ~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+.++.|. +.+++.++|+..+
T Consensus 98 v~~~~G~~~~~~l~~~i~~lL 118 (119)
T d2es7a1 98 RGALSGIHPWAELLTLMRSIV 118 (119)
T ss_dssp --CEESCCCHHHHHHHHHHHH
T ss_pred EEEeeCCCCHHHHHHHHHHHh
Confidence 9999999 9999999998753
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.4e-19 Score=140.45 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=90.0
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC----CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP----YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~----~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~ 490 (543)
+.+.|++++..++.++|.||++||++|+.+.|.+++++..+. .+.++.||++.++.++.+|+|.++||+++|++|+
T Consensus 13 ~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~ 92 (120)
T d1meka_ 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred CHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEEECCe
Confidence 457778888889999999999999999999999999998873 3899999999999999999999999999999997
Q ss_pred EEE--EEcCC-CHHHHHHHHHhcCCCC
Q 009096 491 KLK--EMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 491 ~~~--~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
.+. ++.|. +.++|.+||++.++|+
T Consensus 93 ~~~~~~~~g~~~~~~l~~fi~~~~~p~ 119 (120)
T d1meka_ 93 TASPKEYTAGREADDIVNWLKKRTGPA 119 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred EeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence 654 45677 9999999999998876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.3e-17 Score=138.23 Aligned_cols=120 Identities=26% Similarity=0.501 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 009096 276 KMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVS 355 (543)
Q Consensus 276 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 355 (543)
..+..+...|..+++.|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++..+|..+|.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 45666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 356 NEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 356 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
+..+|++++|+.+|+++++++|+++.+...+..+...+++
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 127 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 127 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877655543
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=3.8e-19 Score=129.50 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=74.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
++..++.||++||++|+.+.|.+++++.++++ +.+..+|++++++++++|||+++||++++++|+ ++|. +.+++
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l 77 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL 77 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence 35678899999999999999999999999986 899999999999999999999999999887775 5688 99999
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
.++|++++
T Consensus 78 ~~~i~~~L 85 (85)
T d1fo5a_ 78 VEAIKKRL 85 (85)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99999864
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.2e-18 Score=168.57 Aligned_cols=227 Identities=11% Similarity=-0.017 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCC
Q 009096 66 EALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHH 145 (543)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 145 (543)
+|+++|++|++++|+.+.++.++|.++...|++++| |++++..+|+...++...+.+. ...|..+++.+++..+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k- 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK- 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc-
Confidence 789999999999999999999999999999999887 8999999987766653332222 1123334444433322
Q ss_pred CChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCC
Q 009096 146 PDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIG--VDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEH 223 (543)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 223 (543)
.. ++........++.+....+.|+.|+..+.+++..+|
T Consensus 78 ----------------------------------------~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~ 117 (497)
T d1ya0a1 78 ----------------------------------------NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL 117 (497)
T ss_dssp ----------------------------------------CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred ----------------------------------------cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 11 111111122234444455666666666666666666
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009096 224 YSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGE 303 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 303 (543)
.+...+.. +|..+...|++++|+..+.+++..+|... +..+|.++...|++++|+.+|++
T Consensus 118 ~~~~~~~~------lg~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~LG~l~~~~~~~~~A~~~y~~ 177 (497)
T d1ya0a1 118 PCRVKSSQ------LGIISNKQTHTSAIVKPQSSSCSYICQHC--------------LVHLGDIARYRNQTSQAESYYRH 177 (497)
T ss_dssp -------------------------------CCHHHHHHHHHH--------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHH------hHHHHHhCCCHHHHHHHHHHHhCCCHHHH--------------HHHHHHHHHHcccHHHHHHHHHH
Confidence 65443332 36666666666666666666665443211 12356667777777777777777
Q ss_pred HhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 304 GLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 304 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
|++++|+++.+|+++|.++...|++.+|+.+|.+++..+|.++.++.+++.++.+
T Consensus 178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776666666666665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.8e-17 Score=157.30 Aligned_cols=268 Identities=12% Similarity=0.005 Sum_probs=188.4
Q ss_pred cCCCCCCCCccccccccC-----HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc------hhhHHhHHHHHHHcCCH
Q 009096 30 SNINNNNNNVKTSNVAVD-----AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN------AAYRSNRAATLTALGRL 98 (543)
Q Consensus 30 ~~~a~~~~~~~~~~~~~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~ 98 (543)
.+.|...+++++...|.+ ..++..+|.+++..|++++|+..|+++++..|.. ..++..++.++...|++
T Consensus 28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (366)
T d1hz4a_ 28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 107 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777666655 4578899999999999999999999999875432 46788999999999999
Q ss_pred HHHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHhCCHHHHHHHhcCCCC-CCChHHHhHHHHHHHHHHHHHhhhh
Q 009096 99 TEAVSDCEEAVRLDPG--------YNRAHQRLASLYFRLGQVENARHHLCFPGH-HPDPNELLKLQSFEKHLNRCAESRK 169 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (543)
..|...+.+++.+.+. ....+..+|.++...|+++.|...+.++.. .+...
T Consensus 108 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------- 167 (366)
T d1hz4a_ 108 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-------------------- 167 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--------------------
T ss_pred HHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh--------------------
Confidence 9999999999875422 234566778888888888888877765543 11000
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCC-hhHHHHHHHHHHHHHHHhhcCh
Q 009096 170 IGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSP-PSQVKFLVWLLKLMFNISELRF 248 (543)
Q Consensus 170 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~g~~ 248 (543)
+......+...+..+...+++.++...+.++....+... ........+...+.++...|++
T Consensus 168 ------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 168 ------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp ------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence 001122333445555555555555555554443322221 1122223445557788888888
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------CCCChhHHhHHHHHH
Q 009096 249 ENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKY------DSYNSILYCNRAICW 322 (543)
Q Consensus 249 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~ 322 (543)
++|...+++++...|.+...... .+..+|.++...|++++|+..+++++.. .|....++..+|.+|
T Consensus 230 ~~a~~~~~~~~~~~~~~~~~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 301 (366)
T d1hz4a_ 230 AAAANWLRHTAKPEFANNHFLQG--------QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301 (366)
T ss_dssp HHHHHHHHHSCCCCCTTCGGGHH--------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 88888888888877765432211 1234788999999999999999988743 455678899999999
Q ss_pred HHccCHHHHHHHHHHHHhhCC
Q 009096 323 SKMGLWENSIEDCNVALRIQP 343 (543)
Q Consensus 323 ~~~g~~~~A~~~~~~al~~~p 343 (543)
...|++++|++.+++++++.+
T Consensus 302 ~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 302 WQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998743
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.72 E-value=6.2e-18 Score=130.60 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=83.4
Q ss_pred eehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCc----HHHHHHcCCCcccEEEEEE
Q 009096 413 ISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEES----LAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 413 ~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~----~~~~~~~~v~~~Pt~~~~~ 487 (543)
..+.+.+.+.+..+++++++||++||++|+.+.|.+++++.+++. +.++.+|.... ..++.+|+|.++||+++|+
T Consensus 13 ~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~ 92 (115)
T d1zmaa1 13 VTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT 92 (115)
T ss_dssp ECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred eCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence 456788889999999999999999999999999999999998865 65555544332 4689999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHH
Q 009096 488 NGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 488 ~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
||+++.++.|. ++++|+++|.
T Consensus 93 ~gk~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 93 DGQINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp TTEEEEECCTTCCHHHHHHHHT
T ss_pred CCEEEEEEcCCCCHHHHHHHHc
Confidence 99999999999 9999999984
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.1e-15 Score=140.13 Aligned_cols=149 Identities=12% Similarity=0.026 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHh-hcChHHHHHHHHHHhhcCCC---cHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 009096 233 LVWLLKLMFNIS-ELRFENAVSSAEKAGLLDYS---NVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYD 308 (543)
Q Consensus 233 ~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 308 (543)
..+..+|.++.. .|++++|+..|++++.+.+. ...... .+.++|.++...|+|++|+..|++++...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~---------~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK---------CFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh---------HHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence 344455777754 69999999999999876433 222222 24568999999999999999999999988
Q ss_pred CCCh-------hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHHH--ccCHHHHHHHHHHHHh
Q 009096 309 SYNS-------ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKA-----LLRRAVSNEK--LGRWSEAVRDYEALRR 374 (543)
Q Consensus 309 p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~--~g~~~~A~~~~~~al~ 374 (543)
+... ..+...|.++...|+++.|...++++++++|..... ...+..++.. .+.+++|+..|+++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred ccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 7764 356788999999999999999999999999875543 3445555544 3569999999998777
Q ss_pred cCCCChHHHHHHHHHHHHH
Q 009096 375 ELPGDNEVAESLHNAQVAL 393 (543)
Q Consensus 375 ~~p~~~~~~~~l~~~~~~l 393 (543)
++| .....|.++...+
T Consensus 269 lD~---~~~~~L~~~k~~l 284 (290)
T d1qqea_ 269 LDK---WKITILNKIKESI 284 (290)
T ss_dssp CCH---HHHHHHHHHHHHH
T ss_pred cCH---HHHHHHHHHHHhh
Confidence 754 3333344444444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.71 E-value=2.7e-16 Score=128.74 Aligned_cols=121 Identities=24% Similarity=0.307 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----------------hhHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----------------SILYCNRAICWSKMGLWENSIEDCNVALR 340 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 340 (543)
.+..+...|..++..|+|.+|+..|++++...+.. ..++.++|.||.++|++++|+.+++++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 34456778999999999999999999999875533 24678999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhh
Q 009096 341 IQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSR 397 (543)
Q Consensus 341 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 397 (543)
++|++..+|+++|.++..+|++++|+.+|+++++++|+++.+...+..+...+++.+
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~ 152 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 152 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999998887776543
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=7.8e-18 Score=121.93 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=70.4
Q ss_pred eeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHH
Q 009096 429 SLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDS 506 (543)
Q Consensus 429 ~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~ 506 (543)
.+..||++||++|+.+.|.++++++++++ +.|+++|++++++++++|||.++||+++ +|+. ++.|. ++++++++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~~l~~~ 79 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEA 79 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCcE--EEEcCCCHHHHHHH
Confidence 35569999999999999999999999976 9999999999999999999999999876 5653 46788 99999999
Q ss_pred HHhcC
Q 009096 507 ANLAP 511 (543)
Q Consensus 507 ~~~~~ 511 (543)
|++.+
T Consensus 80 i~~~l 84 (85)
T d1nhoa_ 80 INDEM 84 (85)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.8e-16 Score=131.17 Aligned_cols=123 Identities=22% Similarity=0.364 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.+..+.+.|..++..|+|++|+..|++++...|.. ..++.++|.||.++|++++|+.++++++.+
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 34456778999999999999999999999987654 356788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 342 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+...+..+...++.....
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988777655443
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.2e-17 Score=128.79 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=83.7
Q ss_pred EEeehhhhhhhccCC--CCceeeeeeCC-------CCccccchhHhHHHHHhhCCC-eEEEEEeCc-------CcHHHHH
Q 009096 411 EEISSLEKFKAAISS--PGVSLVHFKEA-------SSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-------ESLAIAK 473 (543)
Q Consensus 411 ~~~~~~~~~~~~i~~--~~~~lv~f~~~-------~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-------~~~~~~~ 473 (543)
..+.+.+.+.+++.. +++++|+||++ ||++|+.+.|.++++++.+++ +.|++||++ .+..++.
T Consensus 4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~ 83 (119)
T d1woua_ 4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 83 (119)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence 346677888887743 56899999995 999999999999999999975 999999985 4566999
Q ss_pred HcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHHh
Q 009096 474 SEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 474 ~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
+|+|.++||+++|++|+.+....+.+++.++.++++
T Consensus 84 ~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~e 119 (119)
T d1woua_ 84 NLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 119 (119)
T ss_dssp HHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred hCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhcC
Confidence 999999999999999988776666688888888763
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=3.5e-17 Score=121.06 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=72.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLE 504 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~ 504 (543)
....++.|+++|||+|+.+.|.+++++..++++.|..+|++++++++++|||+++||+++ ||+.+ ..|. +.++|.
T Consensus 15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~~~~l~ 90 (96)
T d1hyua4 15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF--GQGRMTLTEIV 90 (96)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHHHHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEEE--CCEEE--EecCCCHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999754 99986 4588 999999
Q ss_pred HHHHh
Q 009096 505 DSANL 509 (543)
Q Consensus 505 ~~~~~ 509 (543)
++|++
T Consensus 91 ~~les 95 (96)
T d1hyua4 91 AKVDT 95 (96)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 98864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.8e-16 Score=121.29 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
+...|..++..|++++|+..|+++++.+|+++.++ ..+|.++...|++++|+..|.++++++|+++.+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 73 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLY------------SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhh------------hcccccccccccccccchhhhhHHHhccchhhH
Confidence 44569999999999999999999999999999886 347999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNE 357 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 357 (543)
|+++|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-15 Score=129.32 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChh
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSI 313 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 313 (543)
.+++.|..+...|++++|++.|.++ .|.++.++ +++|.++..+|++++|++.|+++++++|+++.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~------------~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~ 71 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRIC------------FNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 71 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHH------------HHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence 3446699999999999999999864 44555543 45899999999999999999999999999999
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNY----------------TKALLRRAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
+|+++|.++.++|++++|+..|++++...|.+ .++++++|.++..+|++++|++.+++++++.|
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999875543 37889999999999999999999999999998
Q ss_pred CChH
Q 009096 378 GDNE 381 (543)
Q Consensus 378 ~~~~ 381 (543)
+...
T Consensus 152 ~~~~ 155 (192)
T d1hh8a_ 152 EPRH 155 (192)
T ss_dssp SGGG
T ss_pred Ccch
Confidence 8544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.1e-17 Score=163.51 Aligned_cols=233 Identities=10% Similarity=-0.045 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHH
Q 009096 99 TEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLR 178 (543)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 178 (543)
-+|+++|++|+++.|+.+.++.++|.++...|++++| |++++
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i----------------------------------- 44 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKML----------------------------------- 44 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHH-----------------------------------
Confidence 3799999999999999999999999999999988876 43333
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 009096 179 ETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKA 258 (543)
Q Consensus 179 ~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 258 (543)
..+|+. ...+. +...+-...+..+++.++...+........... ....+.+....+.|+.|+..+.++
T Consensus 45 ------~~dp~~-a~~~~--~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~---~~~~~~l~~a~~~Y~~ai~~l~~~ 112 (497)
T d1ya0a1 45 ------VTDLEY-ALDKK--VEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQ---ANLSLFLEAASGFYTQLLQELCTV 112 (497)
T ss_dssp ------HHCHHH-HHHHT--HHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHH---HHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred ------HcChhh-HHHHh--HHHHHHHHHHHHHHHHHHHhcccccCccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 00110 011111122445566666555433222111111 111255667788899999999999
Q ss_pred hhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHH
Q 009096 259 GLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVA 338 (543)
Q Consensus 259 l~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 338 (543)
+.++|++...+ .++|..+...|++++|+..+.+++..+| ..++.++|.++...|++++|+.+|++|
T Consensus 113 ~~l~~~~~~~~------------~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A 178 (497)
T d1ya0a1 113 FNVDLPCRVKS------------SQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHA 178 (497)
T ss_dssp ------------------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCChhhHHHH------------HHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999887764 3479999999999999999999988766 468889999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 339 LRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 339 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
++++|++..+|+++|.++...|++.+|+.+|.+++.++|..+.++.+|..+.....+
T Consensus 179 ~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 179 AQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999887765543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=7e-17 Score=139.77 Aligned_cols=103 Identities=25% Similarity=0.451 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 009096 279 VRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK 358 (543)
Q Consensus 279 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 358 (543)
..+.+.|..++..|+|++|+..|+++++++|+++.+|.++|.||..+|++++|+.+|+++++++|+++.+|+++|.++..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCChH
Q 009096 359 LGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 359 ~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
+|++++|+..|+++++++|++..
T Consensus 85 l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999886544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=5.5e-15 Score=136.73 Aligned_cols=241 Identities=11% Similarity=-0.035 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHH
Q 009096 98 LTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVL 177 (543)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 177 (543)
.+.+...|++|+...|.++..|+..+..+...++.... .+......+..++|.
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~a~ 84 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAE---------------------------KGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---------------------------TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHH---------------------------HHHHhhcccchHHHH
Confidence 34567788999999999999998887766554332111 111122334567888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 009096 178 RETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEK 257 (543)
Q Consensus 178 ~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 257 (543)
..|+++++..+.....++...+..+...|++++|...|++++...|.+... .|...+......|+++.|...|++
T Consensus 85 ~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~-----~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL-----VYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-----HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHcCChHHHHHHHHH
Confidence 899999986555568889999999999999999999999999998887542 344447888899999999999999
Q ss_pred HhhcCCCcHHHHHHHHhHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHH
Q 009096 258 AGLLDYSNVEIASVLTNVKMVVRARTRGNNL-FSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCN 336 (543)
Q Consensus 258 al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 336 (543)
+++..|.+...+.. .|... ...|+.+.|..+|++++...|+++.+|...+..+...|++++|...|+
T Consensus 160 al~~~~~~~~~~~~------------~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 160 AREDARTRHHVYVT------------AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHTSTTCCTHHHHH------------HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhCCCcHHHHHH------------HHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999887633 34443 446899999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHH
Q 009096 337 VALRIQPNYT----KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEV 382 (543)
Q Consensus 337 ~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 382 (543)
+++...|.++ ..|..........|+.+.+...++++.++.|++...
T Consensus 228 ~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 9999877554 477778888888999999999999999999987654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-15 Score=130.18 Aligned_cols=94 Identities=18% Similarity=0.111 Sum_probs=86.5
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
+-.++..|..++..|+|++|++.|.++ .|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+++|.++.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345668899999999999999999864 56678999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCCCC
Q 009096 128 RLGQVENARHHLCFPGH 144 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a~~ 144 (543)
.+|++++|+..|++++.
T Consensus 82 ~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALI 98 (192)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHH
Confidence 99999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.66 E-value=1.4e-15 Score=126.62 Aligned_cols=122 Identities=20% Similarity=0.353 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN---------------SILYCNRAICWSKMGLWENSIEDCNVALRI 341 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 341 (543)
.+..+...|..++..|+|.+|+..|++++...|.. ..++.++|.||..+|++++|+.++++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 34456778999999999999999999999764432 356788999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhh
Q 009096 342 QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRG 398 (543)
Q Consensus 342 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 398 (543)
+|++..+++++|.++..+|++++|+.+|+++++++|+++.+...+..+...+.....
T Consensus 94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999988877765543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.1e-15 Score=124.55 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCh
Q 009096 233 LVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 233 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 312 (543)
..+..+|..++..|+|++|+..|+++++++|++..++ ..+|.++...|++++|+..|+++++++|++.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~------------~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~ 78 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYY------------GNRSLAYLRTECYGYALGDATRAIELDKKYI 78 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhh------------hhhHHHHHhccccchHHHHHHHHHHHcccch
Confidence 3455569999999999999999999999999999886 3479999999999999999999999999999
Q ss_pred hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--ccCHHHHHH
Q 009096 313 ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK--LGRWSEAVR 367 (543)
Q Consensus 313 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~ 367 (543)
.+|..+|.++..+|++++|+.+|++++.++|+++.++..++.+... .+.+++|+.
T Consensus 79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888877543 334555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.66 E-value=1e-15 Score=127.85 Aligned_cols=119 Identities=27% Similarity=0.452 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc----------------CCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 009096 281 ARTRGNNLFSSRRYSEACSAYGEGLKY----------------DSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPN 344 (543)
Q Consensus 281 ~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 344 (543)
+...|..++..|+|++|+..|+++++. +|....++.++|.++.++|++++|+..|+++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 456799999999999999999999864 4556778999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhhh
Q 009096 345 YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKKSRGE 399 (543)
Q Consensus 345 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 399 (543)
++.+|+++|.++..+|++++|+..|+++++++|+++.+...+..+...+++....
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887665543
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.66 E-value=1.1e-16 Score=125.33 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=84.6
Q ss_pred eEEeehhhhhhhccCCCCceeeeeeCCCCccc------cchhHhHHHHHhhCC--CeEEEEEeCcCcHHHHHHcCCCccc
Q 009096 410 VEEISSLEKFKAAISSPGVSLVHFKEASSEKC------EEISPFVNLLCVRYP--YVHFFKVDVEESLAIAKSEGVRTVP 481 (543)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c------~~~~p~l~~l~~~~~--~~~~~~~d~~~~~~~~~~~~v~~~P 481 (543)
+..++ .++|++.+...+.++|.||+|||++| ..+.+.++.++..+. ++.|++||+++++.++++|+|.++|
T Consensus 13 V~~L~-~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yP 91 (124)
T d1a8ya1 13 VINVN-AKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEED 91 (124)
T ss_dssp CEECC-TTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTT
T ss_pred cEECC-HHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCC
Confidence 44444 56788888888899999999999964 445556666666553 4999999999999999999999999
Q ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHhcCCC
Q 009096 482 TFKIYKNGEKLKEMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 482 t~~~~~~g~~~~~~~g~-~~~~~~~~~~~~~~~ 513 (543)
|+++|++|+.+ .+.|. +.+.|.+||.+.+.+
T Consensus 92 Ti~~f~~g~~~-~y~G~r~~~~l~~fi~~~l~~ 123 (124)
T d1a8ya1 92 SIYVFKEDEVI-EYDGEFSADTLVEFLLDVLED 123 (124)
T ss_dssp CEEEEESSSEE-ECCSCCSHHHHHHHHHHHHSC
T ss_pred cEEEeccCccE-EeeCCCCHHHHHHHHHHhcCC
Confidence 99999999887 46787 999999999987654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.7e-15 Score=138.92 Aligned_cols=217 Identities=15% Similarity=0.036 Sum_probs=139.2
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcC------CcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMS------PENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGY------ 115 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 115 (543)
++.|...|.+|...|+|++|+.+|.+++++. +....++.++|.||..+|++++|+.+|++++++.+..
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 4567777888888888888888888887752 2224667778888888888888888888877765433
Q ss_pred hhHHHHHHHHHHH-hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCC-----
Q 009096 116 NRAHQRLASLYFR-LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVD----- 189 (543)
Q Consensus 116 ~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----- 189 (543)
..++..+|.++.. .|++++|+.+| .+++++.+.
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~-----------------------------------------~~A~~l~~~~~~~~ 155 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCY-----------------------------------------ELAGEWYAQDQSVA 155 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHH-----------------------------------------HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHH-----------------------------------------HHHHHHHHhcCchh
Confidence 3345555555533 35555555555 444433211
Q ss_pred CCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHH-HHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHH
Q 009096 190 SSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVK-FLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEI 268 (543)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 268 (543)
....++..+|.++..+|++++|+..|++++...+........ ...+...+.++...|++..|...++++++++|.....
T Consensus 156 ~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred hhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 113456678888888888888888888888877776433222 2334555888889999999999999999999876654
Q ss_pred HHHHHhHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHhccCCCCh
Q 009096 269 ASVLTNVKMVVRARTRGNNLFS--SRRYSEACSAYGEGLKYDSYNS 312 (543)
Q Consensus 269 ~~~l~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~ 312 (543)
.... .+..+..++.. .+.+++|+..|.++.+++|...
T Consensus 236 re~~-------~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~ 274 (290)
T d1qqea_ 236 RESN-------FLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (290)
T ss_dssp --HH-------HHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHH
Confidence 3110 01223444433 4569999999988888776433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-15 Score=120.15 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHH
Q 009096 277 MVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT-------KAL 349 (543)
Q Consensus 277 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~ 349 (543)
.+..+.++|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|+|++|+..|+++++++|+++ .++
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455678999999999999999999999999999999999999999999999999999999999998775 467
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009096 350 LRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALK 394 (543)
Q Consensus 350 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 394 (543)
..+|.++..++++++|+.+|++++..+|+ +++...+..+...++
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk 126 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence 77888889999999999999999999874 666666666655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5.4e-16 Score=120.51 Aligned_cols=113 Identities=18% Similarity=0.105 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc---cCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q 009096 283 TRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM---GLWENSIEDCNVALRIQPNY--TKALLRRAVSNE 357 (543)
Q Consensus 283 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 357 (543)
+++..+...+++++|.+.|++++.++|+++.+++++|.++.+. +++++|+..|++++..+|.+ .++++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999874 45668999999999998765 468999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q 009096 358 KLGRWSEAVRDYEALRRELPGDNEVAESLHNAQVALKK 395 (543)
Q Consensus 358 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 395 (543)
.+|++++|+++|+++++++|++..+...+..+...+++
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999888877766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=8.6e-16 Score=132.77 Aligned_cols=99 Identities=27% Similarity=0.376 Sum_probs=94.6
Q ss_pred cCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 009096 46 VDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASL 125 (543)
Q Consensus 46 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (543)
.+++.+...|..++..|+|++|+..|+++++++|+++.+|.++|.||..+|++++|+.+|+++++++|+++.+|+++|.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHhcCCCC
Q 009096 126 YFRLGQVENARHHLCFPGH 144 (543)
Q Consensus 126 ~~~~g~~~~A~~~~~~a~~ 144 (543)
|..+|++++|+..|++++.
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999876653
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.62 E-value=6.2e-17 Score=125.74 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=77.6
Q ss_pred CeEEeehhhhhhhc-cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 409 EVEEISSLEKFKAA-ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 409 ~~~~~~~~~~~~~~-i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
.+..++ .+.|++. +..+++++|.||++||++|+.+.|.++++++.+.+ ..+..++.++....+.+++|.++||++
T Consensus 3 ~V~~lt-~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~ 81 (116)
T d2djja1 3 PVTVVV-AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK 81 (116)
T ss_dssp SSEECC-TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred CcEEcc-cCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence 344444 4556554 47788999999999999999999999999998854 122334444444456689999999999
Q ss_pred EEECCeEE--EEEcCC-CHHHHHHHHHhcC
Q 009096 485 IYKNGEKL--KEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 485 ~~~~g~~~--~~~~g~-~~~~~~~~~~~~~ 511 (543)
+|++|+.. ..+.|. +.++|.++|++..
T Consensus 82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~ 111 (116)
T d2djja1 82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENG 111 (116)
T ss_dssp EECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred EEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence 99988643 346677 9999999999754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=8.5e-14 Score=128.58 Aligned_cols=224 Identities=9% Similarity=-0.104 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHhcCCcchhhHHhHHHHHHHc--------------CCHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Q 009096 64 FVEALKLYDKAISMSPENAAYRSNRAATLTAL--------------GRLTEAVSDCEEAVRL-DPGYNRAHQRLASLYFR 128 (543)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 128 (543)
.+.+...|++|+...|.++..|+..+..+... +..++|...|+++++. .|.+...|..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46688899999999999999999887765433 3457888888888874 67777788888877777
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCh
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQN 208 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~ 208 (543)
.|+++.|...| ++++...|.....++...+......|++
T Consensus 112 ~~~~~~a~~i~-----------------------------------------~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 112 RMKYEKVHSIY-----------------------------------------NRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp TTCHHHHHHHH-----------------------------------------HHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHH-----------------------------------------HHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 77666666555 5566666666566788888889999999
Q ss_pred hHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHH-HhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHH
Q 009096 209 EDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFN-ISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNN 287 (543)
Q Consensus 209 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~ 287 (543)
+.|...|.++++..|.+...+... +... ...|+.+.|...|++++...|+++..+.. .+..
T Consensus 151 ~~ar~i~~~al~~~~~~~~~~~~~------a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~------------y~~~ 212 (308)
T d2onda1 151 KSGRMIFKKAREDARTRHHVYVTA------ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA------------YIDY 212 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHH------HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHH------HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHH------------HHHH
Confidence 999999999999999887654443 5443 44689999999999999999999988744 4777
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCh----hHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 009096 288 LFSSRRYSEACSAYGEGLKYDSYNS----ILYCNRAICWSKMGLWENSIEDCNVALRIQPNYT 346 (543)
Q Consensus 288 ~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 346 (543)
+...|+++.|..+|++++...|.++ .+|..........|+.+.+...++++.+..|+..
T Consensus 213 ~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 8899999999999999999877554 4777778887888999999999999999988764
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.1e-15 Score=131.16 Aligned_cols=102 Identities=24% Similarity=0.349 Sum_probs=89.0
Q ss_pred CCeEEeehhhhhhhccCC---CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 408 GEVEEISSLEKFKAAISS---PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 408 ~~~~~~~~~~~~~~~i~~---~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
|.+..+.+.+.|.+++.. +..|+|.||++||++|+.|.|.|..++.+||+++|++||.+..+ +...|+|.++||++
T Consensus 99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i~~lPtl~ 177 (217)
T d2trcp_ 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPTLL 177 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCGGGCSEEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch-hHHhCCCCCCCeEE
Confidence 668788877777777643 34689999999999999999999999999999999999998765 56799999999999
Q ss_pred EEECCeEEEEEcCC--------CHHHHHHHHHhc
Q 009096 485 IYKNGEKLKEMINP--------SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~~~~~g~--------~~~~~~~~~~~~ 510 (543)
+|+||+.+.+++|+ +.++|+.+|.++
T Consensus 178 ~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~ 211 (217)
T d2trcp_ 178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred EEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence 99999999999984 468888888765
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=9.1e-17 Score=129.00 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=80.7
Q ss_pred CeEEeehhhhhhhcc-CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC----eEEEEEeCcCcHHHHHHcCCCcccEE
Q 009096 409 EVEEISSLEKFKAAI-SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY----VHFFKVDVEESLAIAKSEGVRTVPTF 483 (543)
Q Consensus 409 ~~~~~~~~~~~~~~i-~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~----~~~~~~d~~~~~~~~~~~~v~~~Pt~ 483 (543)
.+..+++ +.|++.+ ..+++++|.||++||++|+.+.|.+++++..+.+ +.++.+|. ...++.+|+|.++||+
T Consensus 13 ~V~~l~~-~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~--~~~~~~~~~v~~~Ptl 89 (140)
T d2b5ea1 13 SVFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH--TENDVRGVVIEGYPTI 89 (140)
T ss_dssp SEEEECT-TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG--GGCCCSSCCCSSSSEE
T ss_pred CcEEecC-cCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec--cchhccccccccCCeE
Confidence 3555544 5556655 5677899999999999999999999999988743 55555555 4568999999999999
Q ss_pred EEEECCeEEEE--EcCC-CHHHHHHHHHhcCC
Q 009096 484 KIYKNGEKLKE--MINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 484 ~~~~~g~~~~~--~~g~-~~~~~~~~~~~~~~ 512 (543)
++|++|+...+ +.|. +.+.|.+||++...
T Consensus 90 ~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~ 121 (140)
T d2b5ea1 90 VLYPGGKKSESVVYQGSRSLDSLFDFIKENGH 121 (140)
T ss_dssp EEECCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEECCEEcceeEeCCCCCHHHHHHHHHHcCC
Confidence 99999977654 4687 99999999998643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.61 E-value=3.7e-15 Score=114.51 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
+.+|..+.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 009096 362 WSEAVRDYEALR 373 (543)
Q Consensus 362 ~~~A~~~~~~al 373 (543)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999976
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=7.3e-16 Score=119.68 Aligned_cols=98 Identities=11% Similarity=0.228 Sum_probs=78.8
Q ss_pred Eeehhhhhhhcc--CCCCceeeeeeCCCCccccchhHhH---HHHHhhCCCeEEEEEeCc----CcHHHHHHcCCCcccE
Q 009096 412 EISSLEKFKAAI--SSPGVSLVHFKEASSEKCEEISPFV---NLLCVRYPYVHFFKVDVE----ESLAIAKSEGVRTVPT 482 (543)
Q Consensus 412 ~~~~~~~~~~~i--~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~~~~~~~~~d~~----~~~~~~~~~~v~~~Pt 482 (543)
.+.+.+.+...+ ..+++++|+||++||++|+.+.|.+ .++.+.+.++.+..+|++ ...+++++|+|.++||
T Consensus 6 ~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 85 (117)
T d2fwha1 6 QIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT 85 (117)
T ss_dssp ECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred EecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceE
Confidence 344555555554 2467999999999999999999987 666667778778888764 3457899999999999
Q ss_pred EEEEE-CCeEEE--EEcCC-CHHHHHHHHHh
Q 009096 483 FKIYK-NGEKLK--EMINP-SHQFLEDSANL 509 (543)
Q Consensus 483 ~~~~~-~g~~~~--~~~g~-~~~~~~~~~~~ 509 (543)
+++|. +|+++. ++.|+ +++++.++|++
T Consensus 86 ~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 86 ILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred EEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 99994 898764 68898 99999999975
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.59 E-value=1.4e-15 Score=118.36 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=81.5
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhC----CCeEEEEEeCc-----CcHHHHHHcCC--CcccEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRY----PYVHFFKVDVE-----ESLAIAKSEGV--RTVPTF 483 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~----~~~~~~~~d~~-----~~~~~~~~~~v--~~~Pt~ 483 (543)
+...|++.+...+.++|.||++||++|+ .|.++++++.+ +++.+++||++ ++++++.+|+| .++||+
T Consensus 8 ~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi 85 (122)
T d2c0ga2 8 DELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSI 85 (122)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEE
T ss_pred ChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcE
Confidence 4466899998899999999999999999 58898888764 56899999986 46899999998 589999
Q ss_pred EEEECCeEEE---EEcCC-CHHHHHHHHHhcCCCC
Q 009096 484 KIYKNGEKLK---EMINP-SHQFLEDSANLAPSPV 514 (543)
Q Consensus 484 ~~~~~g~~~~---~~~g~-~~~~~~~~~~~~~~~~ 514 (543)
++|++|.... ...|. +.+.|.++|++....+
T Consensus 86 ~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~~ 120 (122)
T d2c0ga2 86 FLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLY 120 (122)
T ss_dssp EEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSCC
T ss_pred EEEeCCcccccccccCCCCCHHHHHHHHHHhcCcc
Confidence 9999886433 34466 9999999999987654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.58 E-value=3.4e-15 Score=114.73 Aligned_cols=95 Identities=20% Similarity=0.098 Sum_probs=91.0
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYF 127 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (543)
.+.++.+|..+++.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.+|.
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHhcCC
Q 009096 128 RLGQVENARHHLCFP 142 (543)
Q Consensus 128 ~~g~~~~A~~~~~~a 142 (543)
.+|++++|++.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 999999999998764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.8e-14 Score=115.68 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHH---HHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIAS---VLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 310 (543)
.+...|..++..|++++|+..|++++...|....... ..........+.++|.++.+.|+|++|+..+++++.++|+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 3445588888888888888888888877665432100 0011112233567999999999999999999999999999
Q ss_pred ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 311 NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...++.+....++..+..
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.55 E-value=1.4e-14 Score=116.77 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=98.5
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 009096 287 NLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKM----------GLWENSIEDCNVALRIQPNYTKALLRRAVSN 356 (543)
Q Consensus 287 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 356 (543)
.+.+.+.|++|+..|+++++++|+++.+++++|.++..+ +.+++|+..|+++++++|+++.+|+++|.+|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 356677899999999999999999999999999999854 4568999999999999999999999999999
Q ss_pred HHccC-----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 009096 357 EKLGR-----------WSEAVRDYEALRRELPGDNEVAESLHNAQVALKKS 396 (543)
Q Consensus 357 ~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 396 (543)
..+|+ +++|.++|+++++++|++..++..|.......+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~ 136 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH 136 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 88764 79999999999999999999999998877665433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.53 E-value=3.7e-13 Score=111.68 Aligned_cols=138 Identities=17% Similarity=0.098 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH---HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 009096 235 WLLKLMFNISELRFENAVSSAEKAGLLDYSNVE---IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN 311 (543)
Q Consensus 235 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 311 (543)
+...|..++..|++.+|+..|.+++...|.... .............+.++|.++..+|++++|+..++++++++|++
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~ 97 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 97 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence 444588888888888888888888755433221 11111111233345679999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHH
Q 009096 312 SILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSE-AVRDYEAL 372 (543)
Q Consensus 312 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~a 372 (543)
..+++++|.++..+|++++|+.+|++++.++|+++.++..++.+....+++.+ ..+.|.+.
T Consensus 98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887776654 33444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.53 E-value=1.9e-13 Score=111.41 Aligned_cols=128 Identities=14% Similarity=0.007 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHH----HHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 009096 234 VWLLKLMFNISELRFENAVSSAEKAGLLDYSNVE----IASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDS 309 (543)
Q Consensus 234 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 309 (543)
.+...|..++..|+|.+|+..|.+++...+.... ..........+..+.++|.++.++|++++|++.++++++++|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 3445588888888888888888888866553321 111111112233456799999999999999999999999999
Q ss_pred CChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 009096 310 YNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGR 361 (543)
Q Consensus 310 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 361 (543)
++..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+..++++
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.3e-14 Score=112.11 Aligned_cols=103 Identities=31% Similarity=0.459 Sum_probs=91.7
Q ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-------HHH
Q 009096 48 AEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNR-------AHQ 120 (543)
Q Consensus 48 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~ 120 (543)
+..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|.++. ++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999988754 566
Q ss_pred HHHHHHHHhCCHHHHHHHhcCCCC-CCChHH
Q 009096 121 RLASLYFRLGQVENARHHLCFPGH-HPDPNE 150 (543)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 150 (543)
.+|.++..++++++|+.+|++++. .+++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 114 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Confidence 677788888899999999988876 444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.8e-14 Score=108.82 Aligned_cols=109 Identities=10% Similarity=-0.030 Sum_probs=97.1
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCC--hh
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSS---RRYSEACSAYGEGLKYDSYN--SI 313 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~--~~ 313 (543)
+..+...+++++|.+.|++++.++|+++.++ +++|.++... +++++|+..|++++..+|.+ ..
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~------------~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~ 73 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQ------------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHH------------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHH------------HHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHH
Confidence 6678899999999999999999999999985 4579999864 45668999999999988765 45
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 009096 314 LYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKL 359 (543)
Q Consensus 314 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 359 (543)
+++++|.+|.++|++++|+++|+++++++|++..+...++.+..+.
T Consensus 74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999888887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.50 E-value=1.7e-13 Score=114.10 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=98.4
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHH----HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVL----TNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSIL 314 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 314 (543)
|..++..|++++|+..|.+++...+......... .+......+.++|.++.++|+|++|+..|+++++++|+++.+
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a 113 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 113 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhH
Confidence 5566666666666666666654432221110000 011123335678999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAV 366 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 366 (543)
|+++|.+|..+|++++|+..|+++++++|++..+...++.+........++.
T Consensus 114 ~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 114 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988777666553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=2.5e-11 Score=109.09 Aligned_cols=234 Identities=15% Similarity=0.122 Sum_probs=163.3
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHH----cCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTA----LGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
||++++.+|..++..|++++|+.+|+++.+. ++..+++.||.+|.. ..++..|...++.+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 5789999999999999999999999999775 578899999999987 67889999999987764 467777777
Q ss_pred HHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009096 123 ASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAH 202 (543)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~ 202 (543)
|.++..... ...+.+.|...++++...++ ......++..+
T Consensus 77 ~~~~~~~~~-------------------------------------~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~ 116 (265)
T d1ouva_ 77 GNLYYSGQG-------------------------------------VSQNTNKALQYYSKACDLKY---AEGCASLGGIY 116 (265)
T ss_dssp HHHHHHTSS-------------------------------------SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred ccccccccc-------------------------------------cchhhHHHHHHHhhhhhhhh---hhHHHhhcccc
Confidence 776654211 12344445555555555432 22333333333
Q ss_pred HHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHH
Q 009096 203 LKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRAR 282 (543)
Q Consensus 203 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 282 (543)
..... .......|...+.+.... .+...+ .
T Consensus 117 ~~~~~------------------------------------~~~~~~~a~~~~~~~~~~--~~~~~~------------~ 146 (265)
T d1ouva_ 117 HDGKV------------------------------------VTRDFKKAVEYFTKACDL--NDGDGC------------T 146 (265)
T ss_dssp HHCSS------------------------------------SCCCHHHHHHHHHHHHHT--TCHHHH------------H
T ss_pred cCCCc------------------------------------ccchhHHHHHHhhhhhcc--cccchh------------h
Confidence 22110 122233444555544332 233332 2
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 009096 283 TRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAV 354 (543)
Q Consensus 283 ~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 354 (543)
.+|..+.. ..+...+..+++.+.+ +.++.+++++|.+|.. ..++++|+.+|+++.+. +++.+++++|.
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~ 222 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGA 222 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHH
Confidence 35666654 4667788888888775 4578899999999987 67899999999999887 57899999999
Q ss_pred HHHH----ccCHHHHHHHHHHHHhcCCC
Q 009096 355 SNEK----LGRWSEAVRDYEALRRELPG 378 (543)
Q Consensus 355 ~~~~----~g~~~~A~~~~~~al~~~p~ 378 (543)
+|.. ..++++|+++|++|.+..+.
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 9986 44899999999999888643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.46 E-value=1.3e-13 Score=110.98 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=97.1
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhccCCC
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----------SRRYSEACSAYGEGLKYDSY 310 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----------~~~~~~A~~~~~~al~~~p~ 310 (543)
.+.+++.|++|+..|+++++++|+++.++.. +|.++.. .+.+++|+..|+++++++|+
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~------------~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~ 73 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTR------------WGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 73 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHH------------HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence 4567888999999999999999999998643 5666653 45678999999999999999
Q ss_pred ChhHHhHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 009096 311 NSILYCNRAICWSKMGL-----------WENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEA 365 (543)
Q Consensus 311 ~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 365 (543)
++.+|+++|.+|..+|+ +++|+++|+++++++|++..++..++.+....+.+.++
T Consensus 74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988764 79999999999999999999999999887655555554
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=6e-14 Score=111.83 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=69.0
Q ss_pred cCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc-----------------------CcHHHHHHcCCCc
Q 009096 423 ISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE-----------------------ESLAIAKSEGVRT 479 (543)
Q Consensus 423 i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~-----------------------~~~~~~~~~~v~~ 479 (543)
+..+++++++||++||++|+...|.++++..+. +.++.++.+ .+..++..|||.+
T Consensus 17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 94 (136)
T d1z5ye1 17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQG--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 94 (136)
T ss_dssp HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCS
T ss_pred HcCCCEEEEEEEcCcCCCcCccccchhhhhhhh--hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCC
Confidence 346889999999999999999999999997654 333333332 2346899999999
Q ss_pred ccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcC
Q 009096 480 VPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAP 511 (543)
Q Consensus 480 ~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~ 511 (543)
+||++++ ++|+++.+..|. +++++++.|++.+
T Consensus 95 ~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll 128 (136)
T d1z5ye1 95 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW 128 (136)
T ss_dssp BSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred cceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence 9987777 599999999998 8888877776543
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.6e-13 Score=101.48 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=72.5
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQF 502 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 502 (543)
.+..++++.|+++||++|+.+.|.|+++..+++ +.++.+|+++++++.++|+++ +|++++ ||+++ ..|. ++++
T Consensus 13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~~ 86 (100)
T d1wjka_ 13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTSK 86 (100)
T ss_dssp CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHHH
T ss_pred CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHHH
Confidence 345688999999999999999999999987776 678889999999999999997 997654 88876 3465 9999
Q ss_pred HHHHHHhcCCCC
Q 009096 503 LEDSANLAPSPV 514 (543)
Q Consensus 503 ~~~~~~~~~~~~ 514 (543)
|+++|++....+
T Consensus 87 L~~~L~~l~~~~ 98 (100)
T d1wjka_ 87 LEKQLRKLSGPS 98 (100)
T ss_dssp HHHHHHSSSCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999877654
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1.5e-13 Score=106.67 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=76.1
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCC---C-----eEEEEEeCcCcHHHHHHcC--CCcccEEE
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---Y-----VHFFKVDVEESLAIAKSEG--VRTVPTFK 484 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~-----~~~~~~d~~~~~~~~~~~~--v~~~Pt~~ 484 (543)
+...|++.+..++.++|.|+++||..|. .|.+.+++..+. + +.+..+|++.++.++.+++ |.++||++
T Consensus 10 ~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~ 87 (122)
T d1g7ea_ 10 DTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFY 87 (122)
T ss_dssp SHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEE
T ss_pred CHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEE
Confidence 4567789998899999999999998886 377777777663 2 3445567888999999875 77999999
Q ss_pred EEECCeEE--EEEcCC-CHHHHHHHHHhc
Q 009096 485 IYKNGEKL--KEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 485 ~~~~g~~~--~~~~g~-~~~~~~~~~~~~ 510 (543)
+|++|+.. ..+.|. +.+.|.+||++.
T Consensus 88 ~f~~G~~~~~~~y~G~rt~~~l~~fi~~~ 116 (122)
T d1g7ea_ 88 LFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116 (122)
T ss_dssp EEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred EEecCcccCceecCCCCCHHHHHHHHHhc
Confidence 99999643 457788 999999999986
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=1.9e-12 Score=102.73 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=72.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~~~P 481 (543)
.++++++.||++||++|+...|.+.++.++++++.++.++.++ ...+.+.|||.++|
T Consensus 24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P 103 (134)
T d1zzoa1 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence 4689999999999999999999999999999887777776543 24689999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+++++. +|++.. +.|. +.+++.+.|+++
T Consensus 104 ~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 104 AYAFVDPHGNVDV-VRGRMSQDELTRRVTAL 133 (134)
T ss_dssp EEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence 988884 898655 5677 999999999875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.34 E-value=7.8e-13 Score=108.26 Aligned_cols=100 Identities=14% Similarity=0.237 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCC------------hhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC-----
Q 009096 282 RTRGNNLFSSRRYSEACSAYGEGLKYDSYN------------SILYCNRAICWSKMGLWENSIEDCNVALRIQPN----- 344 (543)
Q Consensus 282 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 344 (543)
+..|..++..|+|++|+..|++++++.|+. +.+|.++|.+|..+|++++|+..+++++.+.|.
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence 446889999999999999999999987764 357889999999999999999999999987542
Q ss_pred ------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChH
Q 009096 345 ------YTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNE 381 (543)
Q Consensus 345 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 381 (543)
...+++++|.+|..+|++++|+..|++++++.|+...
T Consensus 93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 2357899999999999999999999999999775533
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.7e-12 Score=93.93 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=75.8
Q ss_pred CHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc-------hhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHH
Q 009096 47 DAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN-------AAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAH 119 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (543)
+++.++.+|..+++.|+|++|+.+|++|+++.|.+ ..++.++|.++.++|++++|+..|+++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 67889999999999999999999999999885543 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 009096 120 QRLASLYFRL 129 (543)
Q Consensus 120 ~~la~~~~~~ 129 (543)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998876554
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=2.3e-12 Score=101.96 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----------------------HHHHHHcCCCcccE
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----------------------LAIAKSEGVRTVPT 482 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----------------------~~~~~~~~v~~~Pt 482 (543)
.++++++.||++||++|+...|.++++.++++++.++.++.++. ..++..|||.++|+
T Consensus 23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~ 102 (134)
T d1lu4a_ 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence 46899999999999999999999999999999988888887642 46889999999999
Q ss_pred EEEEE-CCeEEE--EEcCC-CHHHHHHHHHhc
Q 009096 483 FKIYK-NGEKLK--EMINP-SHQFLEDSANLA 510 (543)
Q Consensus 483 ~~~~~-~g~~~~--~~~g~-~~~~~~~~~~~~ 510 (543)
++++. +|+++. +..|. +.+++.+.|+.+
T Consensus 103 ~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L 134 (134)
T d1lu4a_ 103 FVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134 (134)
T ss_dssp EEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred EEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence 98885 887754 34566 999999998753
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.32 E-value=3.3e-12 Score=102.68 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=74.8
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc----------------------------CcHHHHH
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE----------------------------ESLAIAK 473 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~----------------------------~~~~~~~ 473 (543)
-.++++++.||++||++|+...|.+.++.+++. ++.++.+..+ ....++.
T Consensus 21 ~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 100 (143)
T d2fy6a1 21 KKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ 100 (143)
T ss_dssp CTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHH
Confidence 357899999999999999999999999988774 4666555432 2346899
Q ss_pred HcCCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 474 SEGVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 474 ~~~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.|||.++|+++++ ++|+++.+..|. +.+++.++|++.-+
T Consensus 101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~a 141 (143)
T d2fy6a1 101 SLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNA 141 (143)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTS
T ss_pred HcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHhc
Confidence 9999999998888 699999999999 99999999997654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=8.5e-12 Score=91.92 Aligned_cols=78 Identities=12% Similarity=-0.083 Sum_probs=38.2
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 315 YCNRAICWSKMGLWENSIEDCNVALRIQPNY-------TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 315 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
++.+|.++.+.|+|++|+.+|++|+++.|.+ ..++.++|.++.++|++++|+.+|+++++++|+++.+..++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3444444444444444444444444443221 344555555555555555555555555555555555555554
Q ss_pred HHHHH
Q 009096 388 NAQVA 392 (543)
Q Consensus 388 ~~~~~ 392 (543)
.....
T Consensus 88 ~~~~~ 92 (95)
T d1tjca_ 88 YFEYI 92 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.30 E-value=3.3e-12 Score=102.66 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC-----------------------cCcHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV-----------------------EESLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~-----------------------~~~~~~~~~~~v~~~P 481 (543)
.+++++++||++||++|+...|.+.++.+.++. .+..|.. |.+..+++.|||.++|
T Consensus 30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 108 (144)
T d1knga_ 30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF-QLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP 108 (144)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTS-EEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred CCCEEEEEeeccccccccccCchhhhhhhccCc-eeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence 468999999999999999999999999877643 3333322 2245699999999999
Q ss_pred EEEEEE-CCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 482 TFKIYK-NGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 482 t~~~~~-~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|++++. +|+++.+..|. +.+++++.|++.
T Consensus 109 ~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~ 139 (144)
T d1knga_ 109 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQ 139 (144)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred eEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 888885 99999999999 999988887764
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=4.3e-12 Score=101.76 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC---------------------------cHHHHHHc
Q 009096 424 SSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE---------------------------SLAIAKSE 475 (543)
Q Consensus 424 ~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~---------------------------~~~~~~~~ 475 (543)
..++++++.||++||++|+...|.+.++.+++++ +.++.++++. ...+++.|
T Consensus 27 ~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 106 (143)
T d2b5xa1 27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF 106 (143)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred hCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence 4578999999999999999999999999999875 7887776531 13588899
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+|.++||++++ ++|+++.+..|. +.+++++.|+++
T Consensus 107 ~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l 143 (143)
T d2b5xa1 107 ENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (143)
T ss_dssp CCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence 99999998888 699999999999 999999998863
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5.3e-12 Score=100.47 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=75.7
Q ss_pred ccCCCCceeeeeeCCCCccccchhHhH---HHHHhhC-CCeEEEEEeCcCc--HHHHHHcCCCcccEEEEEE--CCeEEE
Q 009096 422 AISSPGVSLVHFKEASSEKCEEISPFV---NLLCVRY-PYVHFFKVDVEES--LAIAKSEGVRTVPTFKIYK--NGEKLK 493 (543)
Q Consensus 422 ~i~~~~~~lv~f~~~~c~~c~~~~p~l---~~l~~~~-~~~~~~~~d~~~~--~~~~~~~~v~~~Pt~~~~~--~g~~~~ 493 (543)
+...+++++|+|+++||++|+.|.+.+ +++.+-+ .++.++.+|.+.. ..++++|+|.++||++++. +|+++.
T Consensus 38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~ 117 (147)
T d2dlxa1 38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLV 117 (147)
T ss_dssp HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCE
T ss_pred HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEec
Confidence 345589999999999999999987733 3443333 3588888988754 7799999999999999995 688886
Q ss_pred EEcCCCHHHHHHHHHhcCCCCCCCCcc
Q 009096 494 EMINPSHQFLEDSANLAPSPVYKLPLV 520 (543)
Q Consensus 494 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 520 (543)
...+.+++++.+.|++++.....+-+.
T Consensus 118 ~~~~~~~~~fl~~L~~fl~~~~~~~~~ 144 (147)
T d2dlxa1 118 EWHQLDVSSFLDQVTGFLGEHGQLDGL 144 (147)
T ss_dssp EESSCCHHHHHHHHHHHHHHTCSCSSC
T ss_pred ccCCCCHHHHHHHHHHHHhhCCCCcCc
Confidence 665569999988888887655443333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.19 E-value=1.3e-11 Score=100.69 Aligned_cols=110 Identities=11% Similarity=0.054 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-----
Q 009096 236 LLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSY----- 310 (543)
Q Consensus 236 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----- 310 (543)
+..|..++..|+|++|+..|++++.+.|+.++..........+..+.++|.++..+|+|++|+..+++++++.|.
T Consensus 13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence 344888899999999999999999988876532111111112233567899999999999999999999986442
Q ss_pred ------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 009096 311 ------NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNY 345 (543)
Q Consensus 311 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 345 (543)
...+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 23478999999999999999999999999986643
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.17 E-value=4.4e-11 Score=94.99 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC--eEEEEEeCcCc----------------------HHHHHHcCCCcc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEES----------------------LAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~~----------------------~~~~~~~~v~~~ 480 (543)
.++++++.||++||++|....|.+.++.+++++ +.++.++.++. ..++..|||.++
T Consensus 24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 103 (137)
T d1st9a_ 24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 103 (137)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence 467899999999999999999999999998854 88888776542 368899999999
Q ss_pred cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 481 PTFKIY-KNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 481 Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
|+++++ ++|+++.+..|. +.+.+.++++..
T Consensus 104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 104 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 135 (137)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence 988888 599999999999 999998888754
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.14 E-value=4.5e-11 Score=95.30 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.+++++++||++||++|+...|.|.++.+++. ++.++.|+.|+. ..+++.|||
T Consensus 27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v 106 (144)
T d1i5ga_ 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence 47899999999999999999999999988774 478888887753 237889999
Q ss_pred CcccEEEEEE-C-CeEEE
Q 009096 478 RTVPTFKIYK-N-GEKLK 493 (543)
Q Consensus 478 ~~~Pt~~~~~-~-g~~~~ 493 (543)
.++||++++. + |+++.
T Consensus 107 ~~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 107 KSIPTLVGVEADSGNIIT 124 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CCcCEEEEEeCCCCEEEe
Confidence 9999988886 5 77765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.14 E-value=1.6e-10 Score=102.24 Aligned_cols=130 Identities=19% Similarity=0.168 Sum_probs=110.3
Q ss_pred hhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHH
Q 009096 55 GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVEN 134 (543)
Q Consensus 55 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (543)
+...+..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCC
Q 009096 135 ARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDS 190 (543)
Q Consensus 135 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 190 (543)
+...+.+.....++.. ...+...+..+...|++++|...+.++.+..|..
T Consensus 83 a~~~~~~~~~~~~p~~------~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 83 FAQGAATAKVLGENEE------LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp HTTSCCCEECCCSCHH------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhhhhcccCchH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 7776655444333332 2335556777778899999999999988888765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.08 E-value=3.1e-08 Score=88.31 Aligned_cols=213 Identities=12% Similarity=0.008 Sum_probs=146.5
Q ss_pred chhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHH
Q 009096 81 NAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKH 160 (543)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 160 (543)
||.+++.+|..++..+++++|+++|+++.+. ++..+++.||.+|..-..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~----------------------------- 49 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQG----------------------------- 49 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS-----------------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC-----------------------------
Confidence 5789999999999999999999999999875 578899999999876210
Q ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHH
Q 009096 161 LNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLM 240 (543)
Q Consensus 161 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (543)
...++..|...+..+.... .+.....+|.++....
T Consensus 50 --------~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~---------------------------------- 84 (265)
T d1ouva_ 50 --------VEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQ---------------------------------- 84 (265)
T ss_dssp --------SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS----------------------------------
T ss_pred --------cchhHHHHHHhhccccccc---ccchhhcccccccccc----------------------------------
Confidence 0123333444444444332 1333344443332211
Q ss_pred HHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCChhHHh
Q 009096 241 FNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFS----SRRYSEACSAYGEGLKYDSYNSILYC 316 (543)
Q Consensus 241 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 316 (543)
....+.+.|...++.+....+..... .+|..+.. ......|...+.+... +.+...+.
T Consensus 85 --~~~~~~~~a~~~~~~a~~~g~~~a~~--------------~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 146 (265)
T d1ouva_ 85 --GVSQNTNKALQYYSKACDLKYAEGCA--------------SLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCT 146 (265)
T ss_dssp --SSCCCHHHHHHHHHHHHHTTCHHHHH--------------HHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred --ccchhhHHHHHHHhhhhhhhhhhHHH--------------hhcccccCCCcccchhHHHHHHhhhhhc--ccccchhh
Confidence 11234556677777776654433322 13444443 5567888888887665 45678899
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 009096 317 NRAICWSK----MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELPGDNEVAESLHN 388 (543)
Q Consensus 317 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 388 (543)
.+|.++.. ..+...+..+++.+.+ +.++.+.+++|.++.. ..++++|+.+|+++.+.. ++.+...|+.
T Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~ 222 (265)
T d1ouva_ 147 ILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred hhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHH
Confidence 99999986 5678888899888875 4689999999999987 679999999999999884 6777777776
Q ss_pred HHH
Q 009096 389 AQV 391 (543)
Q Consensus 389 ~~~ 391 (543)
+..
T Consensus 223 ~y~ 225 (265)
T d1ouva_ 223 MQY 225 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.08 E-value=1.1e-10 Score=93.43 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=59.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.+++++++||++||++|+...|.|.++.++|+ ++.++.|..|+. ..+++.|||
T Consensus 27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v 106 (144)
T d1o73a_ 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence 47899999999999999999999999998883 488888887643 247889999
Q ss_pred CcccEEEEEE-C-CeEEEE
Q 009096 478 RTVPTFKIYK-N-GEKLKE 494 (543)
Q Consensus 478 ~~~Pt~~~~~-~-g~~~~~ 494 (543)
.++||++++. + |+++.+
T Consensus 107 ~~~Pt~~lID~~~G~Ii~~ 125 (144)
T d1o73a_ 107 ESIPTLITINADTGAIIGT 125 (144)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CcCCEEEEEECCCCEEEee
Confidence 9999999986 5 777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=2.8e-09 Score=88.20 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC----------------------hhHHhHHHHHHHHccCHHHHHHHH
Q 009096 278 VVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYN----------------------SILYCNRAICWSKMGLWENSIEDC 335 (543)
Q Consensus 278 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~ 335 (543)
+..+...|......|++++|+..|.+++.+.+.. ..++.+++.++..+|++++|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 4445678999999999999999999999987644 256788999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 336 NVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 336 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
++++..+|.+..+|..++.++...|++.+|++.|+++.+
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999833
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.06 E-value=2.4e-10 Score=95.31 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=72.3
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCc-----------------------------CcHHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVE-----------------------------ESLAIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~-----------------------------~~~~~~~~ 474 (543)
.++++++.||++||++|+...|.+.++.++|.+ +.|+.++.. ....+++.
T Consensus 31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~ 110 (187)
T d2cvba1 31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 110 (187)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence 467899999999999999999999999999965 777777531 12469999
Q ss_pred cCCCcccEEEEEE-CCeEEEEEc-----C----CCHHHHHHHHHhcCCCCCC
Q 009096 475 EGVRTVPTFKIYK-NGEKLKEMI-----N----PSHQFLEDSANLAPSPVYK 516 (543)
Q Consensus 475 ~~v~~~Pt~~~~~-~g~~~~~~~-----g----~~~~~~~~~~~~~~~~~~~ 516 (543)
|+|.++|+++++. +|+++.+-. + .+..+|++.|+..++....
T Consensus 111 ~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~ 162 (187)
T d2cvba1 111 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP 162 (187)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred ccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence 9999999988885 899887631 1 1445788888887765433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.04 E-value=2e-10 Score=101.65 Aligned_cols=133 Identities=8% Similarity=-0.117 Sum_probs=115.2
Q ss_pred HHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHH
Q 009096 239 LMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNR 318 (543)
Q Consensus 239 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 318 (543)
+.-.+..|++++|+..++++++.+|++...+.. +|.++...|++++|+..|+++++++|++..++..+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~------------La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l 70 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSS------------FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHH------------HHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH------------HHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 345678899999999999999999999998743 79999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHH
Q 009096 319 AICWSKMGLWENSIEDCNVALRI-QPNYTKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVA 383 (543)
Q Consensus 319 a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 383 (543)
+.++...+..+++...+.+.... .|+....+...+.++...|++++|.+.++++.++.|+.+..+
T Consensus 71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 99998888777776655543333 455667788889999999999999999999999999887764
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.7e-10 Score=91.14 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=60.8
Q ss_pred hhhccCCCCceeeeeeCCCCccccchhHhHHHHH---hhCCCeEEEEEeCcCcHHHHHHc-CCCcccEEEEEE-CCeEEE
Q 009096 419 FKAAISSPGVSLVHFKEASSEKCEEISPFVNLLC---VRYPYVHFFKVDVEESLAIAKSE-GVRTVPTFKIYK-NGEKLK 493 (543)
Q Consensus 419 ~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~---~~~~~~~~~~~d~~~~~~~~~~~-~v~~~Pt~~~~~-~g~~~~ 493 (543)
+..+...+++++|+||++||++|+.+.|.+.+.. ....++.++.+|.+....+...+ ...++||++++. +|+++.
T Consensus 18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~ 97 (135)
T d1sena_ 18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP 97 (135)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEE
Confidence 4445567899999999999999999999875433 33356888899988776665443 445689999995 899887
Q ss_pred EEcC
Q 009096 494 EMIN 497 (543)
Q Consensus 494 ~~~g 497 (543)
++.|
T Consensus 98 ~~~g 101 (135)
T d1sena_ 98 EIIN 101 (135)
T ss_dssp TCCC
T ss_pred EecC
Confidence 7766
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=98.94 E-value=9.5e-10 Score=87.99 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC---CeEEEEEeCcCc------------------------HHHHHHcCC
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP---YVHFFKVDVEES------------------------LAIAKSEGV 477 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~---~~~~~~~d~~~~------------------------~~~~~~~~v 477 (543)
.+++++++||++||++|+...|.+.++.+++. ++.++.++.++. ..+.+.|+|
T Consensus 25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v 104 (144)
T d1o8xa_ 25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 104 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence 46899999999999999999999999999883 477778877642 358899999
Q ss_pred CcccEEEEEE-C-CeEEEE
Q 009096 478 RTVPTFKIYK-N-GEKLKE 494 (543)
Q Consensus 478 ~~~Pt~~~~~-~-g~~~~~ 494 (543)
.++||++++. + |+++.+
T Consensus 105 ~~~Pt~~liD~~~G~Vi~~ 123 (144)
T d1o8xa_ 105 ESIPTLIGVDADSGDVVTT 123 (144)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CcCCEEEEEeCCCCEEEEE
Confidence 9999999997 5 677643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=4.2e-09 Score=87.07 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=89.9
Q ss_pred cccCHHHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcc----------------------hhhHHhHHHHHHHcCCHHHH
Q 009096 44 VAVDAEEVKRAGNEMYRKGNFVEALKLYDKAISMSPEN----------------------AAYRSNRAATLTALGRLTEA 101 (543)
Q Consensus 44 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A 101 (543)
+-...+.+...|..+...|++++|+..|.+++.+.+.. ..++..++.++..+|++++|
T Consensus 7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 34456788999999999999999999999999987643 25678899999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCC
Q 009096 102 VSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFP 142 (543)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (543)
+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998665
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.88 E-value=1.3e-09 Score=89.10 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=63.2
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHc---CCCcccEEEEEE-CCeEEEEEcCCC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSE---GVRTVPTFKIYK-NGEKLKEMINPS 499 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~---~v~~~Pt~~~~~-~g~~~~~~~g~~ 499 (543)
.+..++.||++|||+|+...|.+.++++.++++.|..|+++++++...+| +...+|+++++. ++++..++.+.+
T Consensus 54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~P 131 (166)
T d1z6na1 54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP 131 (166)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESSC
T ss_pred CCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccchhcccccccc
Confidence 56778899999999999999999999999999999999999999999998 555778887775 567777776653
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.88 E-value=2.4e-09 Score=88.68 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=67.2
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC--c--------------------------HHHHHH
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE--S--------------------------LAIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~--~--------------------------~~~~~~ 474 (543)
.++++++.||++||++|+...+.+.++..++. ++.++.+.++. . ..+...
T Consensus 55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (176)
T d1jfua_ 55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 134 (176)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence 46899999999999999999999999988774 46666665542 1 123344
Q ss_pred cCCCcccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcC
Q 009096 475 EGVRTVPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAP 511 (543)
Q Consensus 475 ~~v~~~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 511 (543)
++|.++|+++++ ++|+++.++.|. +.+++.+.|+.++
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~ 175 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence 578889998777 599999999995 6688888887653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=1.3e-07 Score=70.46 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=74.2
Q ss_pred hhHHhHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009096 312 SILYCNRAICWSKMG---LWENSIEDCNVALRIQPNYT-KALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAESLH 387 (543)
Q Consensus 312 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 387 (543)
..+.++.|+++.+.. +.++|+..++.++..+|.+. +.++.+|..|.++|+|++|..+++++++++|++..+.....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 688999999999764 46799999999999999775 89999999999999999999999999999999999987777
Q ss_pred HHHHHHHh
Q 009096 388 NAQVALKK 395 (543)
Q Consensus 388 ~~~~~l~~ 395 (543)
.+...+.+
T Consensus 115 ~Ie~~~~k 122 (124)
T d2pqrb1 115 MVEDKIQK 122 (124)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 76666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=1.1e-06 Score=65.31 Aligned_cols=81 Identities=5% Similarity=-0.081 Sum_probs=71.2
Q ss_pred CHHHHHHHhhHHHhcC---CHHHHHHHHHHHHhcCCcch-hhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 009096 47 DAEEVKRAGNEMYRKG---NFVEALKLYDKAISMSPENA-AYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRL 122 (543)
Q Consensus 47 ~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (543)
.++..|..|.++.+.. +.++|+.+++.+++.+|.+. ++++++|..|+++|+|++|..+++++++++|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 5789999999998765 45799999999999999774 8999999999999999999999999999999999987766
Q ss_pred HHHHH
Q 009096 123 ASLYF 127 (543)
Q Consensus 123 a~~~~ 127 (543)
-.+..
T Consensus 114 ~~Ie~ 118 (124)
T d2pqrb1 114 SMVED 118 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=1.8e-07 Score=75.05 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEe-----------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVD----------------------------------------- 464 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d----------------------------------------- 464 (543)
.+.+++.|.-+.||.|+.+.|.+.++.+....+.+...-
T Consensus 26 ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (156)
T d1eeja1 26 EKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDV 105 (156)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcc
Confidence 567888999999999999999999987654333322111
Q ss_pred -CcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 465 -VEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 465 -~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
++.+..+++++||+|+||++ +.||+.+ .|+ +.++|+++|++.
T Consensus 106 ~i~~~~~la~~lgv~GTPt~~-~~nG~~v---~G~~~~e~l~~~i~~~ 149 (156)
T d1eeja1 106 DIADHYALGVQLGVSGTPAVV-LSNGTLV---PGYQPPKEMKEFLDEH 149 (156)
T ss_dssp CHHHHHHHHHHHTCCSSSEEE-CTTSCEE---ESCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcCCCEEE-EeCCeEe---cCCCCHHHHHHHHHHH
Confidence 12245799999999999965 4688754 598 999999999975
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.34 E-value=1.3e-07 Score=75.28 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=63.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeC---------------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDV--------------------------------------- 465 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~--------------------------------------- 465 (543)
+.+.+++.|+-+.||.|+.+.|.+..+.+..+.+.+.....
T Consensus 25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~ 104 (150)
T d1t3ba1 25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP 104 (150)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred CCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence 35577888999999999999999999987765555443322
Q ss_pred ---cCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHhc
Q 009096 466 ---EESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANLA 510 (543)
Q Consensus 466 ---~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~~ 510 (543)
+.+..+++++||+|+||+++ .||+. +.|+ +.++|+++|++-
T Consensus 105 ~~i~~~~~la~~lGv~GTPt~~~-~nG~~---i~G~~~~~~l~~~l~~~ 149 (150)
T d1t3ba1 105 NIVKKHYELGIQFGVRGTPSIVT-STGEL---IGGYLKPADLLRALEET 149 (150)
T ss_dssp SHHHHHHHHHHHHTCCSSCEEEC-TTSCC---CCSCCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhcCcCCCCEEEE-cCCcE---ecCCCCHHHHHHHHHhh
Confidence 12356899999999998775 57864 5698 999999999863
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.33 E-value=7.6e-06 Score=63.45 Aligned_cols=112 Identities=11% Similarity=-0.088 Sum_probs=91.2
Q ss_pred cChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHH-
Q 009096 246 LRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSK- 324 (543)
Q Consensus 246 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 324 (543)
.++++|+.+|+++.+.... .... .+| .....++++|+.+|+++.+. .++.+.+.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g~~--~a~~------------~l~--~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g 68 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM--FGCL------------SLV--SNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG 68 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THHH------------HHH--TCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHCCCh--hhhh------------hhc--cccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhc
Confidence 4788999999999876533 2221 133 34567899999999999875 578999999999986
Q ss_pred ---ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC
Q 009096 325 ---MGLWENSIEDCNVALRIQPNYTKALLRRAVSNEK----LGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 325 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 377 (543)
..++++|+++|+++.+. .++.+.+.+|.+|.. ..+.++|+.+|++|.+...
T Consensus 69 ~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 69 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 56799999999999876 678999999999987 5689999999999998754
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=2.6e-06 Score=68.02 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=56.9
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCC-eEEEEEeCcC---------------------cHHHHHHcCCCccc
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEE---------------------SLAIAKSEGVRTVP 481 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~---------------------~~~~~~~~~v~~~P 481 (543)
.++.+++.|| +.||+.|....+.|.+...++.+ ..++.|..|. ...++++||+...|
T Consensus 32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~ 111 (156)
T d2a4va1 32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP 111 (156)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccc
Confidence 3455666666 79999999999999888888854 5566676553 34689999997776
Q ss_pred ------EEEEEECCeEEEEEcCC
Q 009096 482 ------TFKIYKNGEKLKEMINP 498 (543)
Q Consensus 482 ------t~~~~~~g~~~~~~~g~ 498 (543)
|+++..||+.+.+.+|.
T Consensus 112 ~~~~~r~~~i~~dg~i~~~~~~~ 134 (156)
T d2a4va1 112 LSGSIRSHFIFVDGKLKFKRVKI 134 (156)
T ss_dssp SSCBCCEEEEEETTEEEEEEESC
T ss_pred cCCeeEEEEEEECCeEEEEEEEe
Confidence 56677899999998876
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=98.09 E-value=7.6e-06 Score=55.71 Aligned_cols=68 Identities=10% Similarity=0.173 Sum_probs=52.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH---HHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA---IAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDS 506 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 506 (543)
++.|..+||+.|......|++. ++.|..+|++++++ ..+.+|..++|+++ .||+. +.|+++++|.++
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~---igGf~~d~l~~L 72 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEH---WSGFRPERIKQL 72 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCEE---EeCCCHhHHHHh
Confidence 4678889999999999988763 57777788876543 44677999999864 48864 458888888775
Q ss_pred H
Q 009096 507 A 507 (543)
Q Consensus 507 ~ 507 (543)
+
T Consensus 73 ~ 73 (74)
T d1r7ha_ 73 Q 73 (74)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.05 E-value=3.2e-06 Score=68.16 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=64.4
Q ss_pred CCCCceeeeee-CCCCccccchhHhHHHHHhhCCC--eEEEEEeCcC---------------------cHHHHHHcCCC-
Q 009096 424 SSPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPY--VHFFKVDVEE---------------------SLAIAKSEGVR- 478 (543)
Q Consensus 424 ~~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~--~~~~~~d~~~---------------------~~~~~~~~~v~- 478 (543)
..++++++.|| ++||++|....|.+.++.+++.+ +.++.+..+. ...+++.|||.
T Consensus 28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (160)
T d2cx4a1 28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 107 (160)
T ss_dssp TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence 35678888888 89999999999999999888854 6676666542 34688899883
Q ss_pred ---------cccEEEEE-ECCeEEEEEcCC------CHHHHHHHHHhcC
Q 009096 479 ---------TVPTFKIY-KNGEKLKEMINP------SHQFLEDSANLAP 511 (543)
Q Consensus 479 ---------~~Pt~~~~-~~g~~~~~~~g~------~~~~~~~~~~~~~ 511 (543)
..|+++++ ++|+++.+..+. +.+++.+.++++.
T Consensus 108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~ 156 (160)
T d2cx4a1 108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 156 (160)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 46776666 699998876542 4566666666544
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=7.1e-06 Score=66.43 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=61.8
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcC--------------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-------------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-------------------------------------- 467 (543)
.+.+++.|.-+.||+|+.+.+.++++.++. .+.+..+++.-
T Consensus 36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 114 (169)
T d1v58a1 36 APVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA 114 (169)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccc
Confidence 446688899999999999999999988764 35555444320
Q ss_pred ------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHH
Q 009096 468 ------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSAN 508 (543)
Q Consensus 468 ------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~ 508 (543)
+..+++++||.++||+++...+.....+.|. +.+.|++.+.
T Consensus 115 ~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il~ 168 (169)
T d1v58a1 115 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMG 168 (169)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhc
Confidence 1358889999999999887633345678899 8888887763
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=7.8e-06 Score=55.92 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=50.6
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHH---HHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAI---AKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~---~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
++.|..+||+.|......|++. ++.|..+|++.+++. ....|.+++|++++ ||+. +.|+.++.|.+
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~---i~Gf~~d~i~~ 71 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS---WSGFRPDMINR 71 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE---EESCCHHHHGG
T ss_pred EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE---EECCCHHHHHH
Confidence 4568889999999999988773 677888899877653 34569999999765 7754 45888887754
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.95 E-value=9.3e-06 Score=66.92 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=65.8
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeC--cC----------------------------------
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDV--EE---------------------------------- 467 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~--~~---------------------------------- 467 (543)
..++.++.|....||+|+.+.|.+..+.+++++ +.+....+ ..
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL 96 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 356788999999999999999999999999875 54444332 11
Q ss_pred ---------------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHH
Q 009096 468 ---------------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSA 507 (543)
Q Consensus 468 ---------------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~ 507 (543)
....++++||.++||+++ ||+.+....|. +.+++.+.|
T Consensus 97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i 174 (181)
T d1beda_ 97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV 174 (181)
T ss_dssp CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence 024778889999999987 99876656677 889999988
Q ss_pred HhcC
Q 009096 508 NLAP 511 (543)
Q Consensus 508 ~~~~ 511 (543)
+.++
T Consensus 175 ~~L~ 178 (181)
T d1beda_ 175 NYLL 178 (181)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.95 E-value=1e-05 Score=65.63 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=65.3
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++++++.|| ++||+.|....+.+.+...++. ++.++.|..+. +..++++||
T Consensus 43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg 122 (169)
T d2bmxa1 43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 122 (169)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence 3568888888 8999999999999999888884 57777776653 346899999
Q ss_pred C-----CcccEEEEEE-CCeEEEEEcC-----CCHHHHHHHHHhc
Q 009096 477 V-----RTVPTFKIYK-NGEKLKEMIN-----PSHQFLEDSANLA 510 (543)
Q Consensus 477 v-----~~~Pt~~~~~-~g~~~~~~~g-----~~~~~~~~~~~~~ 510 (543)
| ...|+.+++. +|+++....+ .+.+++.+.|+.+
T Consensus 123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al 167 (169)
T d2bmxa1 123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 167 (169)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8 5778777775 9999775443 2567777777654
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.95 E-value=1.1e-05 Score=65.91 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCC---eEEEEEeCc--C---------------------------------
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPY---VHFFKVDVE--E--------------------------------- 467 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~---~~~~~~d~~--~--------------------------------- 467 (543)
.+..++.|....||+|..+.|.+.++..++++ +.+...... .
T Consensus 24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
T d1z6ma1 24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 103 (172)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence 34568899999999999999999999888743 444443322 1
Q ss_pred -------------------------------cHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHh
Q 009096 468 -------------------------------SLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFLEDSANL 509 (543)
Q Consensus 468 -------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~~~ 509 (543)
....++++||.++||+++ ||+.+ .|. +.++++++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~~---~g~~~~~~~~~~id~ 172 (172)
T d1z6ma1 104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYIF---DESVTEEELRGYIEK 172 (172)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEEE---CTTCCHHHHHHHHTC
T ss_pred ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEe---cCCCCHHHHHHHHcC
Confidence 023566789999999876 99864 587 99999999975
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=4e-05 Score=59.19 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH----hCCHHHHHH
Q 009096 62 GNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR----LGQVENARH 137 (543)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 137 (543)
.++++|+.+|+++.+.. ++.+.+.++. ....++++|++.|+++.+. +++.+.+.||.+|.. ..++++|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 47889999999998764 5666777764 3457889999999998874 578889999998876 457889999
Q ss_pred HhcCCCCCCChHHHhHHHHHHHHHHHHHhhhh----cCCHHHHHHHHHHHHHcCC
Q 009096 138 HLCFPGHHPDPNELLKLQSFEKHLNRCAESRK----IGDWKTVLRETDAAIAIGV 188 (543)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p 188 (543)
+|+++.+..++. +.+.++..+.. ..++++|+.+|+++.+...
T Consensus 81 ~~~~aa~~g~~~---------a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLNDQD---------GCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccCcch---------HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 998887644443 24455555544 4688889999988887753
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=97.89 E-value=2.1e-05 Score=52.86 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=54.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHHHHHh
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLEDSANL 509 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~~~ 509 (543)
+..|..++|+-|......+.+ ..++.+..+|+++++++..+||.. ||.+. ..+|.+.. -++++++++++|..
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~----~~~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~~~~~l~--w~fd~~~l~~~L~~ 73 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ----ARAGAFFSVFIDDDAALESAYGLR-VPVLR-DPMGRELD--WPFDAPRLRAWLDA 73 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH----TTCCCEEEEECTTCHHHHHHHTTT-CSEEE-CTTCCEEE--SCCCHHHHHHHHHT
T ss_pred EEEECCCCccHHHHHHHHHHh----ccCCcEEEEEccCCHHHHHHhCCe-eeEEE-ECCeeEEc--CccCHHHHHHHHhc
Confidence 567889999999987665543 346789999999999999999975 89664 33444332 24699999999875
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=97.89 E-value=1.4e-05 Score=64.55 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=63.3
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||+.|....|.|.+...++. ++.++.|..+. ...++.
T Consensus 32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 111 (167)
T d1e2ya_ 32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR 111 (167)
T ss_dssp TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence 4668999998 9999999999999999888884 47777777653 235788
Q ss_pred HcCCC------cccEEEEE-ECCeEEEEEcC-----CCHHHHHHHHHh
Q 009096 474 SEGVR------TVPTFKIY-KNGEKLKEMIN-----PSHQFLEDSANL 509 (543)
Q Consensus 474 ~~~v~------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~~~ 509 (543)
.|+|. ..|+++++ ++|+++....+ .+.+++.+.|+.
T Consensus 112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a 159 (167)
T d1e2ya_ 112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA 159 (167)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 88883 35665555 59999776543 256787777764
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=1.8e-05 Score=64.37 Aligned_cols=42 Identities=12% Similarity=-0.061 Sum_probs=36.1
Q ss_pred CCCceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCc
Q 009096 425 SPGVSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE 466 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~ 466 (543)
.+++++|.++|+|||+|...-|.|+++.++|. ++.+..+-++
T Consensus 23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n 66 (184)
T d2f8aa1 23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 66 (184)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence 57899999999999999998899999999985 4777777554
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.82 E-value=2.5e-05 Score=52.13 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=53.9
Q ss_pred eeeeCCCCccccchhHhHHHHHhhCC-CeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcC-C-CHHHHHHHH
Q 009096 431 VHFKEASSEKCEEISPFVNLLCVRYP-YVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMIN-P-SHQFLEDSA 507 (543)
Q Consensus 431 v~f~~~~c~~c~~~~p~l~~l~~~~~-~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~~~~~~ 507 (543)
+....+.|+.|..+....+++.++.. +..+.++ ++..++. +|||.++|++++ ||+.+. .| . ++++++++|
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~vv~--~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGELKI--MGRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTEEEE--CSSCCCHHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCEEEE--EecCCCHHHHHHHh
Confidence 34458899999999999999888863 2444444 6777887 599999999876 787654 36 3 999999886
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=6.4e-05 Score=59.61 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=60.1
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-----------------------cHHHHHHcCCCc---
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-----------------------SLAIAKSEGVRT--- 479 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-----------------------~~~~~~~~~v~~--- 479 (543)
.+++.|++.||+.|....+.+.++.+++. ++.++.+..|. ...+++.|||..
T Consensus 32 vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~ 111 (153)
T d1xvwa1 32 VLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQA 111 (153)
T ss_dssp EEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTT
T ss_pred EEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhhcc
Confidence 45555668999999999999999888885 47777776653 245888998852
Q ss_pred ---ccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHhcC
Q 009096 480 ---VPTFKIY-KNGEKLKEMINP-----SHQFLEDSANLAP 511 (543)
Q Consensus 480 ---~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~~~ 511 (543)
.|+++++ ++|++....++. +.+++.+.|+.+.
T Consensus 112 g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~ 152 (153)
T d1xvwa1 112 GIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152 (153)
T ss_dssp TEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred CceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence 3445555 699987765432 5678888877654
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.72 E-value=9.5e-05 Score=54.61 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCceeeeeeC--CCCccccchhHhHHHHHhhCCCeEEEEEeCc--CcHHHHHHcCCCcccEEEEEECCeEE-EEEcCC-C
Q 009096 426 PGVSLVHFKE--ASSEKCEEISPFVNLLCVRYPYVHFFKVDVE--ESLAIAKSEGVRTVPTFKIYKNGEKL-KEMINP-S 499 (543)
Q Consensus 426 ~~~~lv~f~~--~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~ 499 (543)
.++|.+.++. .-|+.|..+...+++++.--+.+.+...|.+ +.++++++|+|..+||+.+..+|+.. -|+.|. .
T Consensus 21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~ 100 (119)
T d1a8la1 21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA 100 (119)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred CCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccC
Confidence 3455554444 5699999999999999877777877777765 46789999999999999999998764 367787 6
Q ss_pred HHHHHHHHHhcC
Q 009096 500 HQFLEDSANLAP 511 (543)
Q Consensus 500 ~~~~~~~~~~~~ 511 (543)
=.|+..+|.-.+
T Consensus 101 GhEf~SlilaIl 112 (119)
T d1a8la1 101 GHEFAAFLEDIV 112 (119)
T ss_dssp TTHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 678888877544
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=97.69 E-value=5.5e-05 Score=60.64 Aligned_cols=84 Identities=19% Similarity=0.070 Sum_probs=62.1
Q ss_pred CCceeeeeeC-CCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcCC
Q 009096 426 PGVSLVHFKE-ASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEGV 477 (543)
Q Consensus 426 ~~~~lv~f~~-~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~v 477 (543)
++++++.||. .||+.|....+.|.++.+++. ++.++.|..|. ...++++||+
T Consensus 31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv 110 (166)
T d1we0a1 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV 110 (166)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCC
Confidence 5688888996 499999999999999998883 57777777663 2468899998
Q ss_pred C------cccEEEEE-ECCeEEEEEcCC-----CHHHHHHHHHh
Q 009096 478 R------TVPTFKIY-KNGEKLKEMINP-----SHQFLEDSANL 509 (543)
Q Consensus 478 ~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~~~ 509 (543)
. ..|+++++ ++|+++....+. +.+++.+.|+.
T Consensus 111 ~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka 154 (166)
T d1we0a1 111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA 154 (166)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred CccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence 5 34544444 699998775543 55677776664
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=97.67 E-value=4.2e-05 Score=64.62 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=65.5
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC---------------------------cHHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE---------------------------SLAIAKS 474 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~---------------------------~~~~~~~ 474 (543)
.++.+++.|| ++||+.|..-.+.|.+...++. ++.++.+.+|. ...+++.
T Consensus 28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~ 107 (237)
T d2zcta1 28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR 107 (237)
T ss_dssp TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence 4667788887 8999999998888888877773 57777776553 3569999
Q ss_pred cCC-------CcccEEEEE-ECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 475 EGV-------RTVPTFKIY-KNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v-------~~~Pt~~~~-~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
||| ..+|+++++ .+|++..... |.+.+++.+.|+.+
T Consensus 108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL 156 (237)
T d2zcta1 108 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 156 (237)
T ss_dssp TTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred cCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 998 467877777 5998876544 33788888888864
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=2.3e-05 Score=54.88 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=53.7
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc----HHHHHHc--CCCcccEEEEEECCeEEEEEcCCCHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES----LAIAKSE--GVRTVPTFKIYKNGEKLKEMINPSHQFL 503 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~----~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 503 (543)
++.|..++|+.|......|+++...++++.+..+|++.. ..+.... ++.++|.+++ ||+.+ .|++ ++
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~I---GG~~--el 75 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHI---GGYT--DF 75 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEE---ESSH--HH
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEE---ECHH--HH
Confidence 467889999999999999999998889999988887643 3444433 4578998644 88755 3663 56
Q ss_pred HHHHHh
Q 009096 504 EDSANL 509 (543)
Q Consensus 504 ~~~~~~ 509 (543)
.+++++
T Consensus 76 ~~~~~~ 81 (85)
T d1egoa_ 76 AAWVKE 81 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666554
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=8.2e-05 Score=59.57 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC---
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR--- 478 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~--- 478 (543)
++++++.|| +.||+.|....|.|.++..++.++.++.|..+. ...+++.||+.
T Consensus 44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~ 123 (164)
T d1qxha_ 44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIAD 123 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBBCS
T ss_pred CCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEeec
Confidence 567777777 679999999999999999888887777666542 35688999974
Q ss_pred ------cccEEEEE-ECCeEEEEEcC
Q 009096 479 ------TVPTFKIY-KNGEKLKEMIN 497 (543)
Q Consensus 479 ------~~Pt~~~~-~~g~~~~~~~g 497 (543)
..|+++++ ++|+++....+
T Consensus 124 ~~~~g~~~ra~fvID~~G~I~y~~~~ 149 (164)
T d1qxha_ 124 GPLKGLAARAVVVIDENDNVIFSQLV 149 (164)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred CcccCcccCEEEEEcCCCEEEEEEEc
Confidence 23555555 59999876544
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=97.46 E-value=0.00023 Score=57.15 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=60.3
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhC--CCeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRY--PYVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~--~~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
.+++++.|| +.||+.|..-.+.|.+...++ .++.++.|..|. ...+++.
T Consensus 33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ 112 (170)
T d1zofa1 33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD 112 (170)
T ss_dssp SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHH
Confidence 457888999 899999999999888887777 357777776653 3468899
Q ss_pred cCCC-----cccEEE-EEECCeEEEEEcC-----CCHHHHHHHHHh
Q 009096 475 EGVR-----TVPTFK-IYKNGEKLKEMIN-----PSHQFLEDSANL 509 (543)
Q Consensus 475 ~~v~-----~~Pt~~-~~~~g~~~~~~~g-----~~~~~~~~~~~~ 509 (543)
|||. ..|+.+ +-++|+++....+ .+.+++.+.|+.
T Consensus 113 ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a 158 (170)
T d1zofa1 113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158 (170)
T ss_dssp TTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred cCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 9984 456544 4469998765433 256666666654
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.36 E-value=0.00017 Score=52.45 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=48.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH-----HHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA-----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~-----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|..+|||.|......|.++.-.++.+.+..+|.+.... +.+..|..++|.++ .||+-+.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIf--i~g~~IG 80 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKECIG 80 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEEEE
T ss_pred EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEE--ECCEEEe
Confidence 66799999999999999999887777778888888776532 34445888999874 4887543
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.00026 Score=56.12 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=61.8
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| +.||+.|..-.+.+.+...++. ++.++.|..|. ...+++.
T Consensus 26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ 105 (158)
T d1zyea1 26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 105 (158)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence 568999999 8999999999999988888773 46666666542 2468899
Q ss_pred cCCCcc------c-EEEEEECCeEEEEEcC-----CCHHHHHHHHHh
Q 009096 475 EGVRTV------P-TFKIYKNGEKLKEMIN-----PSHQFLEDSANL 509 (543)
Q Consensus 475 ~~v~~~------P-t~~~~~~g~~~~~~~g-----~~~~~~~~~~~~ 509 (543)
||+... | |+++-++|+++...++ .+.+++.+.|+.
T Consensus 106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka 152 (158)
T d1zyea1 106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA 152 (158)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 998643 3 4555579999876543 257788888873
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.016 Score=54.39 Aligned_cols=275 Identities=13% Similarity=-0.019 Sum_probs=155.4
Q ss_pred HHHHHhcCCcchhhHHhH---HHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCHHHHHHHhcCCCC---
Q 009096 71 YDKAISMSPENAAYRSNR---AATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFRLGQVENARHHLCFPGH--- 144 (543)
Q Consensus 71 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--- 144 (543)
+...++..|+.+...... -..+...++++..+..+ ...|.+......++.+....|+..+|...+..+-.
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 345567788877654433 33455667776644433 34677788888888999999999888876654433
Q ss_pred -CCChHH-HhH-H-----HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cChhHHHHHh
Q 009096 145 -HPDPNE-LLK-L-----QSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLKL-HQNEDADSCL 215 (543)
Q Consensus 145 -~~~~~~-~~~-~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~~-~~~~~A~~~~ 215 (543)
.++... ... . .....+..+.......|++..|..... .-|...... +...... .+........
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~----~l~~~~~~~----~~a~~~l~~~p~~~~~~~ 205 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG----QMPADYQTI----ASAIISLANNPNTVLTFA 205 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH----TCCGGGHHH----HHHHHHHHHCGGGHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHh----hCChhHHHH----HHHHHHHHhChHhHHHHH
Confidence 222111 100 0 011223344455555666665554432 212211111 1111111 1222222222
Q ss_pred hcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHH
Q 009096 216 SNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYS 295 (543)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 295 (543)
... +.+... . .+...+..-....+.+.|...+.......+.....+.... ..++..+...+..+
T Consensus 206 ~~~----~~~~~~-~---~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~ 269 (450)
T d1qsaa1 206 RTT----GATDFT-R---QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELR--------DIVAWRLMGNDVTD 269 (450)
T ss_dssp HHS----CCCHHH-H---HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHH--------HHHHHTSCSTTCCH
T ss_pred hcC----CCChhh-h---HHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHH--------HHHHHHHHHcCchH
Confidence 221 111111 1 1112244445567888888888887766555554432221 12344445567778
Q ss_pred HHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 009096 296 EACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLRRAVSNEKLGRWSEAVRDYEALRR 374 (543)
Q Consensus 296 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 374 (543)
.|...+........+.......++ .....+++..+...++..-......+...|.+|..+..+|+.++|...|..+..
T Consensus 270 ~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 270 EQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888888777665554444333344 456678999999888765433334568889999999999999999999999875
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.33 E-value=0.00027 Score=57.90 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=65.4
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ++||+.|..-.+.|.++..++. ++.++.|..|. ...+++.
T Consensus 33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ 112 (194)
T d1uula_ 33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 112 (194)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence 578999999 8999999999999999888873 58888887662 3479999
Q ss_pred cCCC------cccE-EEEEECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 475 EGVR------TVPT-FKIYKNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------~~Pt-~~~~~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
|||. ..|+ +++-++|++....+ |.+.+++-+.|+.+
T Consensus 113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al 160 (194)
T d1uula_ 113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 160 (194)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence 9994 3454 54556999887653 23788888888753
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.29 E-value=0.00052 Score=54.68 Aligned_cols=85 Identities=6% Similarity=-0.024 Sum_probs=59.9
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc-----------------------HHHHHHcCCCcc
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES-----------------------LAIAKSEGVRTV 480 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~-----------------------~~~~~~~~v~~~ 480 (543)
.++++++.|| +.||+.|....+.+.+...++.++.++.|..+.. ..++..||+...
T Consensus 41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~ 120 (163)
T d1psqa_ 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN 120 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCT
T ss_pred CCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeecc
Confidence 4567788777 7899999999999999988998888888876631 247788888532
Q ss_pred ----c--E-EEEEECCeEEEEEcCC------CHHHHHHHHHh
Q 009096 481 ----P--T-FKIYKNGEKLKEMINP------SHQFLEDSANL 509 (543)
Q Consensus 481 ----P--t-~~~~~~g~~~~~~~g~------~~~~~~~~~~~ 509 (543)
| + +++-++|+++....+. +.+++.+.|++
T Consensus 121 ~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~ 162 (163)
T d1psqa_ 121 EWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred cccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence 2 3 4444699998764332 33566665554
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00062 Score=54.08 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=60.9
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhC------CCeEEEEEeCcC----------------------------cH
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRY------PYVHFFKVDVEE----------------------------SL 469 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~------~~~~~~~~d~~~----------------------------~~ 469 (543)
.++++++.||.+||+ .|....+.+.++.+++ ..+.+..+..+. ..
T Consensus 19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T d1wp0a1 19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 98 (160)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence 478999999999996 6988888777776643 224444443321 02
Q ss_pred HHHHHcCCCcc---------------cEEEEE-ECCeEEEEEcCC-CHHHHHHHHHhcCC
Q 009096 470 AIAKSEGVRTV---------------PTFKIY-KNGEKLKEMINP-SHQFLEDSANLAPS 512 (543)
Q Consensus 470 ~~~~~~~v~~~---------------Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~~~~~~ 512 (543)
.+...|++... |+++++ ++|+++.++.+. +++++.+.|++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk 158 (160)
T d1wp0a1 99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 158 (160)
T ss_dssp HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 46677776544 355555 599999988776 88899888887654
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=0.0013 Score=52.92 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=59.2
Q ss_pred CCCceeeeeeCCCCc-cccchhHhHHHHHhhC----CCeEEEEEeCcC---cH----HHH--------------------
Q 009096 425 SPGVSLVHFKEASSE-KCEEISPFVNLLCVRY----PYVHFFKVDVEE---SL----AIA-------------------- 472 (543)
Q Consensus 425 ~~~~~lv~f~~~~c~-~c~~~~p~l~~l~~~~----~~~~~~~~d~~~---~~----~~~-------------------- 472 (543)
.++++++.|+.+||+ .|....+.+.++.+++ .++.++.|.+|. .+ ..+
T Consensus 30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~ 109 (172)
T d1xzoa1 30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 109 (172)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccchHHH
Confidence 468999999999997 6999999888877665 357777776652 11 111
Q ss_pred ------HHcCCC-c----------ccEEEEE-ECCeEEEEEcCC---CHHHHHHHHHhcC
Q 009096 473 ------KSEGVR-T----------VPTFKIY-KNGEKLKEMINP---SHQFLEDSANLAP 511 (543)
Q Consensus 473 ------~~~~v~-~----------~Pt~~~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 511 (543)
..|++. . .|+++++ ++|+++..+.|. +.+++.+-|+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~~~ 169 (172)
T d1xzoa1 110 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 169 (172)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 222221 1 1445555 699999888876 5677887777653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.20 E-value=0.065 Score=47.41 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=74.9
Q ss_pred HHHHHHhhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 009096 49 EEVKRAGNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDPGYNRAHQRLASLYFR 128 (543)
Q Consensus 49 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (543)
-..-..|..+++.|.|+.|..+|... .-+-.+..++..+++++.|.+.+.++ ++...|..+...+..
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 81 (336)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence 34456788899999999999999743 22445668889999999999998876 567889999998888
Q ss_pred hCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009096 129 LGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK 204 (543)
Q Consensus 129 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~ 204 (543)
..+..-|...-... ..++.. .......+...|.+++.+..++..+...+.+ ...+..++.+|.+
T Consensus 82 ~~e~~la~i~~~~~--~~~~d~---------l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~-~~~~~~L~~lyak 145 (336)
T d1b89a_ 82 GKEFRLAQMCGLHI--VVHADE---------LEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSK 145 (336)
T ss_dssp TTCHHHHHHTTTTT--TTCHHH---------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHh--hcCHHH---------HHHHHHHHHHcCChHHHHHHHHHHHcCCccc-hHHHHHHHHHHHH
Confidence 88776653321111 122221 1222333445667777777777666554443 4455555655544
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00044 Score=56.79 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.8
Q ss_pred CCceeeeeeCCCCccccchhHhHH---HHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVN---LLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~---~l~~~~~~-~~~~~~d~ 465 (543)
+.+.++.|+.-.||+|+.+.|.+. ++...+++ +.|....+
T Consensus 18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 457788999999999999998763 44445544 66665544
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=96.93 E-value=0.00075 Score=46.40 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=46.8
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcH----HHHHHcCCCcccEEEEEECCeEEEEEcCCCHHHHHH
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESL----AIAKSEGVRTVPTFKIYKNGEKLKEMINPSHQFLED 505 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 505 (543)
+..|..+|||.|......|++. ++.|..+|++..+ ++-+..|..++|.++ .||+-+. |+ +++.+
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~IG---G~--~el~~ 70 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE---SH--HHHHH
T ss_pred EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEEEe---cH--HHHHH
Confidence 4567889999999999888775 5667778887654 345556899999874 4887543 55 24554
Q ss_pred HHH
Q 009096 506 SAN 508 (543)
Q Consensus 506 ~~~ 508 (543)
+.+
T Consensus 71 l~~ 73 (82)
T d1fova_ 71 LDA 73 (82)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.0019 Score=43.17 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=41.5
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCc---HHHHHHcCCCcccEEEEEECCeEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEES---LAIAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~---~~~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
++.|+.++|+.|..+...|++. ++.|..+|++.. ..+.+..|..++|.++ .||+.+.
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~IG 66 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHIG 66 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEE--ECCEEEE
Confidence 5678899999999999998875 455556666543 3455667899999864 4886553
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.72 E-value=0.0034 Score=50.63 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=62.7
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC-------------------------cHHHHHHcC
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE-------------------------SLAIAKSEG 476 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~-------------------------~~~~~~~~~ 476 (543)
.++.+++.|| .+||+.|....+.|.+...++. ++.++.|..|. ...++++||
T Consensus 29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG 108 (186)
T d1n8ja_ 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 108 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence 3568889999 7899999999999988888773 57777776653 346899999
Q ss_pred CC----c--ccEEEEE-ECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 477 VR----T--VPTFKIY-KNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 477 v~----~--~Pt~~~~-~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
|. + .|+++++ ++|++....+ |.+.+++-+.|+.+
T Consensus 109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL 154 (186)
T d1n8ja_ 109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence 84 3 3444444 6898876543 33778888888754
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.72 E-value=0.0018 Score=51.50 Aligned_cols=83 Identities=7% Similarity=0.001 Sum_probs=53.3
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC----------------------cHHHHHHcCCC---
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE----------------------SLAIAKSEGVR--- 478 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~----------------------~~~~~~~~~v~--- 478 (543)
.++++++.|| +.||+.|....|.+.+...++ ++.++.|..+. ...++..+|+.
T Consensus 42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 120 (166)
T d1xvqa_ 42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIAD 120 (166)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCS
T ss_pred CCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeecc
Confidence 4568888888 568888999888887766554 55666665543 23467777764
Q ss_pred ------cccEEEEE-ECCeEEEEEcC--C----CHHHHHHHHH
Q 009096 479 ------TVPTFKIY-KNGEKLKEMIN--P----SHQFLEDSAN 508 (543)
Q Consensus 479 ------~~Pt~~~~-~~g~~~~~~~g--~----~~~~~~~~~~ 508 (543)
..|+++++ ++|+++....+ . +.+++.+.|+
T Consensus 121 ~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~ 163 (166)
T d1xvqa_ 121 GPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 163 (166)
T ss_dssp STTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred CcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence 13555555 69999876432 1 4455555544
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=96.63 E-value=0.0025 Score=48.53 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=72.6
Q ss_pred hhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCC--CcccEEEEEE-CCe
Q 009096 415 SLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGV--RTVPTFKIYK-NGE 490 (543)
Q Consensus 415 ~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v--~~~Pt~~~~~-~g~ 490 (543)
+.+.+......+.+.++.|+..- .....+...+.++++++.+ +.|+.+|.++.....+.||+ ...|+++++. ++.
T Consensus 12 ~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~~~~~ 90 (133)
T d2djka1 12 GPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKN 90 (133)
T ss_dssp CHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTC
T ss_pred ChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEEcCCC
Confidence 34566666667778888777654 4567788899999999977 99999999998888899998 4679998885 333
Q ss_pred EEEEE--cCC-CHHHHHHHHHhcC
Q 009096 491 KLKEM--INP-SHQFLEDSANLAP 511 (543)
Q Consensus 491 ~~~~~--~g~-~~~~~~~~~~~~~ 511 (543)
....+ .+. +.+.|.+||+.+.
T Consensus 91 ~~~~~~~~~~i~~~~i~~Fi~d~~ 114 (133)
T d2djka1 91 QKFPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp CBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred ceecCCccccCCHHHHHHHHHHHH
Confidence 33332 344 8999999999764
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=96.50 E-value=0.0025 Score=50.82 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
.+++++.|| ++||+.|..-.+.|.+...++. ++.++.|..|. ...+++.
T Consensus 27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ 106 (170)
T d2h01a1 27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS 106 (170)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence 467888888 8999999999888888887773 58888887662 2478999
Q ss_pred cCCC-----cccE-EEEEECCeEEEEEcCC-----CHHHHHHHHHhc
Q 009096 475 EGVR-----TVPT-FKIYKNGEKLKEMINP-----SHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~-----~~Pt-~~~~~~g~~~~~~~g~-----~~~~~~~~~~~~ 510 (543)
|||. ..++ +++-++|.+.....+. +.+++.+.|+.+
T Consensus 107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l 153 (170)
T d2h01a1 107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 153 (170)
T ss_dssp TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 9984 2345 4444699888765432 567788888765
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.0041 Score=49.26 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=53.0
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCCCeEEEEEeCcC-----------------------cHHHHHHcCCC---
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYPYVHFFKVDVEE-----------------------SLAIAKSEGVR--- 478 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~-----------------------~~~~~~~~~v~--- 478 (543)
++++++.|| +.||+.|....+.|.+...++.++.++.|.+|. ...++..||+.
T Consensus 42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (164)
T d1q98a_ 42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQT 121 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECS
T ss_pred CcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhceeccc
Confidence 567888888 568888999999999988888887777776652 24577778763
Q ss_pred ----cc--cEEEEE-ECCeEEEEEcC
Q 009096 479 ----TV--PTFKIY-KNGEKLKEMIN 497 (543)
Q Consensus 479 ----~~--Pt~~~~-~~g~~~~~~~g 497 (543)
++ |+++++ ++|+++....+
T Consensus 122 ~~~~g~~~Ra~fvID~~G~I~y~~~~ 147 (164)
T d1q98a_ 122 GPLAGLTSRAVIVLDEQNNVLHSQLV 147 (164)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred CccccCcccEEEEECCCCEEEEEEEC
Confidence 22 556656 59999876544
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0054 Score=44.61 Aligned_cols=95 Identities=8% Similarity=0.038 Sum_probs=70.3
Q ss_pred EeehhhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeE
Q 009096 412 EISSLEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEK 491 (543)
Q Consensus 412 ~~~~~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 491 (543)
.+.+....+..+..+..++|-|..+- -......+.+++..+.++.|+.+. ...++..+||.. |++++|++..+
T Consensus 4 ~l~~~~~~e~f~~~~~v~VVGfF~~~---~~~~~~~F~~~A~~~~d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~de 76 (110)
T d1bjxa_ 4 TLPDGAAAESLVESSEVAVIGFFKDV---ESDSAKQFLQAAEAIDDIPFGITS---NSDVFSKYQLDK-DGVVLFKKFDE 76 (110)
T ss_dssp ECCSHHHHHHHHHHSSEEEEEECTTT---TSHHHHHHHHHHHHCSSSCEEEEC---CSHHHHHTTCSS-CEEEEEESSSS
T ss_pred EcCCHHHHHHHhccCCeEEEEEEcCC---CchHHHHHHHHHHhCcCceEEEEC---CHHHHHHcCCCC-CeEEEeccCCc
Confidence 45667777788878888888887754 223445788888888888877654 446889999965 99999997644
Q ss_pred EE-EEcCC-CHHHHHHHHHhcCCC
Q 009096 492 LK-EMINP-SHQFLEDSANLAPSP 513 (543)
Q Consensus 492 ~~-~~~g~-~~~~~~~~~~~~~~~ 513 (543)
.. .+.|. +.+.|.+||....-|
T Consensus 77 ~~~~~~~~~~~~~l~~fi~~~~~P 100 (110)
T d1bjxa_ 77 GRNNFEGEVTKENLLDFIKHNQLP 100 (110)
T ss_dssp SBCCCCSCCCHHHHHHHHHHHSSC
T ss_pred cccccCCCCCHHHHHHHHHHcCcC
Confidence 33 34556 999999999976543
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0039 Score=46.61 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=72.1
Q ss_pred hhhhhhccCCCCceeeeeeCCCCccccchhHhHHHHHhhCCC-eEEEEEeCcCcHHHHHHcCCCc-ccEEEEEEC-CeEE
Q 009096 416 LEKFKAAISSPGVSLVHFKEASSEKCEEISPFVNLLCVRYPY-VHFFKVDVEESLAIAKSEGVRT-VPTFKIYKN-GEKL 492 (543)
Q Consensus 416 ~~~~~~~i~~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~-~~~~~~d~~~~~~~~~~~~v~~-~Pt~~~~~~-g~~~ 492 (543)
.+.+...+..+.+.++.|+.+- ..-..+.+.+.++++++.+ +.|+.+|.++...+.+.||+.. .|.+++... +...
T Consensus 7 ~~~~~~y~~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~~~k 85 (125)
T d2b5ea3 7 GSVFAQYVESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLK 85 (125)
T ss_dssp HHHHHHHHHTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEE
T ss_pred HHHHHHHHhcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecccCcc
Confidence 3555566667788888888754 2345688889999999987 9999999999888999999964 799888752 2223
Q ss_pred EEE-------------cCC-CHHHHHHHHHhcCC
Q 009096 493 KEM-------------INP-SHQFLEDSANLAPS 512 (543)
Q Consensus 493 ~~~-------------~g~-~~~~~~~~~~~~~~ 512 (543)
.+. .+. +.+.|.+|++.++.
T Consensus 86 y~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~ 119 (125)
T d2b5ea3 86 YGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK 119 (125)
T ss_dssp EECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence 332 244 99999999998654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.54 Score=43.47 Aligned_cols=314 Identities=10% Similarity=-0.063 Sum_probs=179.7
Q ss_pred CCccccccccCHHHHHHH---hhHHHhcCCHHHHHHHHHHHHhcCCcchhhHHhHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 009096 37 NNVKTSNVAVDAEEVKRA---GNEMYRKGNFVEALKLYDKAISMSPENAAYRSNRAATLTALGRLTEAVSDCEEAVRLDP 113 (543)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 113 (543)
+...+...|..|..-... -..+...+++++-+..| ...|.+....+..+.++...|+.++|...+..+....+
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 344556667766553332 34556778887655444 45678888888899999999999999988877655433
Q ss_pred CC------------------hhHHHHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHH
Q 009096 114 GY------------------NRAHQRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKT 175 (543)
Q Consensus 114 ~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (543)
.. +..+..........|++..|...+..+-. +... . ...+... ... ...
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~--~~~~---~--~~a~~~l---~~~---p~~ 200 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA--DYQT---I--ASAIISL---ANN---PNT 200 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG--GGHH---H--HHHHHHH---HHC---GGG
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh--hHHH---H--HHHHHHH---HhC---hHh
Confidence 22 23344555666667777777776654321 1100 0 1111110 000 111
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHH
Q 009096 176 VLRETDAAIAIGVDSSP-QLVACKAEAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSS 254 (543)
Q Consensus 176 A~~~~~~~l~~~p~~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 254 (543)
. .......+.... ......+..-....+.+.|...+.......+......... ....+......+..+.+...
T Consensus 201 ~----~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~a~~~ 274 (450)
T d1qsaa1 201 V----LTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQEL--RDIVAWRLMGNDVTDEQAKW 274 (450)
T ss_dssp H----HHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHH--HHHHHHTSCSTTCCHHHHHH
T ss_pred H----HHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHH--HHHHHHHHHHcCchHHHHHH
Confidence 1 111222222211 1122334444455678888888777655444443322222 11113344455667778777
Q ss_pred HHHHhhcCCCcHHHHHHHHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCChhHHhHHHHHHHHccCHHHHHHH
Q 009096 255 AEKAGLLDYSNVEIASVLTNVKMVVRARTRGNNLFSSRRYSEACSAYGEGLKYDSYNSILYCNRAICWSKMGLWENSIED 334 (543)
Q Consensus 255 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 334 (543)
+........+...... + .+. ....+++..+...+...-......+...+.+|..+..+|+.++|...
T Consensus 275 ~~~~~~~~~~~~~~~w-~-----------~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 275 RDDAIMRSQSTSLIER-R-----------VRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp HHHHHHTCCCHHHHHH-H-----------HHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhcccccchHHHHH-H-----------HHH-HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 7776655544433221 1 233 44567888888888765433334467788999999999999999999
Q ss_pred HHHHHhhCCC--------------------------C---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCChHHHHH
Q 009096 335 CNVALRIQPN--------------------------Y---TKALLRRAVSNEKLGRWSEAVRDYEALRRELPGDNEVAES 385 (543)
Q Consensus 335 ~~~al~~~p~--------------------------~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 385 (543)
|..+... ++ . ...-+..+..+...|+..+|...+..++... ++.-...
T Consensus 342 ~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~ 418 (450)
T d1qsaa1 342 LHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQ 418 (450)
T ss_dssp HHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred HHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHH
Confidence 9887642 11 0 0123466778889999999999988887543 3333334
Q ss_pred HHHH
Q 009096 386 LHNA 389 (543)
Q Consensus 386 l~~~ 389 (543)
+..+
T Consensus 419 la~l 422 (450)
T d1qsaa1 419 LARY 422 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.02 Score=47.33 Aligned_cols=85 Identities=7% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCc-------------------------------CcHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVE-------------------------------ESLAI 471 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~-------------------------------~~~~~ 471 (543)
++++++.|| ++||+.|....+.|.+...++. ++.++.|.+| ....+
T Consensus 27 ~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~v 106 (220)
T d1prxa_ 27 DSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNREL 106 (220)
T ss_dssp TSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHH
T ss_pred CCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccHH
Confidence 467788887 6899999998888888887774 4677766554 23579
Q ss_pred HHHcCCC------------cccEEEEE-ECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 472 AKSEGVR------------TVPTFKIY-KNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 472 ~~~~~v~------------~~Pt~~~~-~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
++.|||. .+++++++ .+|.+....+ |.+.+|+.+.|+.+
T Consensus 107 a~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al 163 (220)
T d1prxa_ 107 AILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 163 (220)
T ss_dssp HHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred HHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence 9999986 23455555 6998877654 34788888888854
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.80 E-value=0.2 Score=44.15 Aligned_cols=210 Identities=10% Similarity=-0.041 Sum_probs=105.8
Q ss_pred HHHHHHHHHhCCHHHHHHHhcCCCCCCChHHHhHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009096 120 QRLASLYFRLGQVENARHHLCFPGHHPDPNELLKLQSFEKHLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKA 199 (543)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a 199 (543)
...|..+...|.|+.|...|...-. +-....++...++++.|.....+. +....|....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3445556666666666666643321 222334455677788887776654 2356676667
Q ss_pred HHHHHccChhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhcCCCcHHHHHHHHhHHHHH
Q 009096 200 EAHLKLHQNEDADSCLSNMPKFEHYSPPSQVKFLVWLLKLMFNISELRFENAVSSAEKAGLLDYSNVEIASVLTNVKMVV 279 (543)
Q Consensus 200 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 279 (543)
..+....+..-|.- ........|+. . ......+...|.+++.+.+++.++...+.+......
T Consensus 77 ~~l~~~~e~~la~i-~~~~~~~~~d~---l------~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~-------- 138 (336)
T d1b89a_ 77 FACVDGKEFRLAQM-CGLHIVVHADE---L------EELINYYQDRGYFEELITMLEAALGLERAHMGMFTE-------- 138 (336)
T ss_dssp HHHHHTTCHHHHHH-TTTTTTTCHHH---H------HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH--------
T ss_pred HHHHhCcHHHHHHH-HHHHhhcCHHH---H------HHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHH--------
Confidence 77776666554422 22222223222 1 112456778889999999999888887777766432
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-hccCCC-------ChhHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 009096 280 RARTRGNNLFSSRRYSEACSAYGEG-LKYDSY-------NSILYCNRAICWSKMGLWENSIEDCNVALRIQPNYTKALLR 351 (543)
Q Consensus 280 ~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 351 (543)
++.++.+- +.++-++.++.. ...++. ....|-.+..+|.+.|++++|+...-. .|.+..-...
T Consensus 139 ----L~~lyak~-~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~----~~~~~~~~~~ 209 (336)
T d1b89a_ 139 ----LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN----HPTDAWKEGQ 209 (336)
T ss_dssp ----HHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH----STTTTCCHHH
T ss_pred ----HHHHHHHh-ChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH----cchhhhhHHH
Confidence 34444443 234444444332 111211 133455677778888888888765433 2222211222
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCC
Q 009096 352 RAVSNEKLGRWSEAVRDYEALRRELP 377 (543)
Q Consensus 352 la~~~~~~g~~~~A~~~~~~al~~~p 377 (543)
.-.++.+.++.+...+...-.++..|
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~~p 235 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEFKP 235 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHccCChHHHHHHHHHHHHcCH
Confidence 23334455555554444444454443
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.78 E-value=0.038 Score=38.97 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=64.7
Q ss_pred EeehhhhhhhccC-CCCceeeeeeCCCCccccchhHhHHHHHhhC-CCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECC
Q 009096 412 EISSLEKFKAAIS-SPGVSLVHFKEASSEKCEEISPFVNLLCVRY-PYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNG 489 (543)
Q Consensus 412 ~~~~~~~~~~~i~-~~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g 489 (543)
.+.+....+..+. .+..++|-|+.+--+ .....+.+++..+ +++.|+... ..++++++|| ..|++++|+.=
T Consensus 3 ~i~~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v-~~~~vvlfr~f 75 (102)
T d1a8ya2 3 LIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTL-KLNEIDFYEAF 75 (102)
T ss_dssp EECSHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCC-CTTCEEEECTT
T ss_pred eecCHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCC-CCCCEEEeeec
Confidence 3456667777776 456778877764322 2445677777776 568888654 7789999999 58999999732
Q ss_pred -eEEEEEcC-C-CHHHHHHHHHhcC
Q 009096 490 -EKLKEMIN-P-SHQFLEDSANLAP 511 (543)
Q Consensus 490 -~~~~~~~g-~-~~~~~~~~~~~~~ 511 (543)
+....+.| . +.+.|..||+...
T Consensus 76 de~~~~~~~~~~t~~~i~~Fi~~n~ 100 (102)
T d1a8ya2 76 MEEPVTIPDKPNSEEEIVNFVEEHR 100 (102)
T ss_dssp CSSEEECSSSSCCHHHHHHHHHHTC
T ss_pred CCCceecCCCCCCHHHHHHHHHHhc
Confidence 11233445 3 8999999998764
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.64 E-value=0.027 Score=46.54 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCc---------C---------cHHHHHHcCCCcccEEEEEE
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVE---------E---------SLAIAKSEGVRTVPTFKIYK 487 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~---------~---------~~~~~~~~~v~~~Pt~~~~~ 487 (543)
.+.++-.|.+.||..|-.....|++|.++ +++..+..-+| . .+..+..+|..++||=-++.
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv 83 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL 83 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence 45677789999999999999999999875 56444433332 1 13467778999988855666
Q ss_pred CCeEEEEEcCCCHHHHHHHHHhcCC
Q 009096 488 NGEKLKEMINPSHQFLEDSANLAPS 512 (543)
Q Consensus 488 ~g~~~~~~~g~~~~~~~~~~~~~~~ 512 (543)
||+. ..+|.+.+.+...|.....
T Consensus 84 nG~~--~~~gs~~~~~~~~i~~~~~ 106 (225)
T d2axoa1 84 NGRD--HVKGADVRGIYDRLDAFKR 106 (225)
T ss_dssp TTTE--EEETTCHHHHHHHHHHHHH
T ss_pred eCcc--cccccCHHHHHHHHHHHhh
Confidence 8874 4458888999998887653
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.016 Score=46.95 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHHH
Q 009096 426 PGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAKS 474 (543)
Q Consensus 426 ~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~~ 474 (543)
++++++.|| ..||+.|......|.+...++. ++.++.|..|. ...+++.
T Consensus 34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ 113 (197)
T d1qmva_ 34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED 113 (197)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence 567888888 8999999999988888888774 57777776653 3469999
Q ss_pred cCCC------cccEEEEE-ECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 475 EGVR------TVPTFKIY-KNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 475 ~~v~------~~Pt~~~~-~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
|||. ..|+++++ .+|++..... |.+.+++.+.|+.+
T Consensus 114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al 161 (197)
T d1qmva_ 114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence 9995 23444444 5998876533 33788888888765
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.039 Score=43.35 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=25.6
Q ss_pred CCCcccEEEEE-ECCeEEEEEcCC-CHH----HHHHHHHhcCC
Q 009096 476 GVRTVPTFKIY-KNGEKLKEMINP-SHQ----FLEDSANLAPS 512 (543)
Q Consensus 476 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~----~~~~~~~~~~~ 512 (543)
.|...|+++++ .+|+++.++.+. +++ +|.+.|++++.
T Consensus 126 ~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll~ 168 (169)
T d2b7ka1 126 LVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP 168 (169)
T ss_dssp CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCC
T ss_pred eeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 45567877666 499999988765 554 46677776653
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.65 E-value=0.052 Score=38.93 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=36.9
Q ss_pred CCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHH----HHHHcCCCcccEEEEEECCeEEE
Q 009096 436 ASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLA----IAKSEGVRTVPTFKIYKNGEKLK 493 (543)
Q Consensus 436 ~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~ 493 (543)
|.|+.|..+...|..+ ++.|..+|+++.++ +.+.-+-..+|.+++ +|+-+.
T Consensus 28 p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--~g~~IG 82 (109)
T d1wika_ 28 AKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--RGDLVG 82 (109)
T ss_dssp CCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--SSSEEE
T ss_pred CCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--CCEEEc
Confidence 7899999999888753 46677788877654 334457788898764 787554
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=92.90 E-value=0.15 Score=41.59 Aligned_cols=86 Identities=3% Similarity=0.008 Sum_probs=61.2
Q ss_pred CCCceeeeee-CCCCccccchhHhHHHHHhhCC--CeEEEEEeCcC----------------------------cHHHHH
Q 009096 425 SPGVSLVHFK-EASSEKCEEISPFVNLLCVRYP--YVHFFKVDVEE----------------------------SLAIAK 473 (543)
Q Consensus 425 ~~~~~lv~f~-~~~c~~c~~~~p~l~~l~~~~~--~~~~~~~d~~~----------------------------~~~~~~ 473 (543)
.++++++.|| ++||+.|..-...|.+...++. ++.++.+.+|. ...+++
T Consensus 29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~ 108 (219)
T d1xcca_ 29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN 108 (219)
T ss_dssp TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence 4677888888 7999999988888877777663 57777776652 346899
Q ss_pred HcCCCc----------cc--EEEEE-ECCeEEEEEc-----CCCHHHHHHHHHhc
Q 009096 474 SEGVRT----------VP--TFKIY-KNGEKLKEMI-----NPSHQFLEDSANLA 510 (543)
Q Consensus 474 ~~~v~~----------~P--t~~~~-~~g~~~~~~~-----g~~~~~~~~~~~~~ 510 (543)
.|||.. ++ +++++ .+|++..... |.+.+++.+.|+.+
T Consensus 109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL 163 (219)
T d1xcca_ 109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 163 (219)
T ss_dssp HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence 999831 22 44444 5898865432 44889999998854
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.22 E-value=3.9 Score=33.15 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-ccChhHHHHHhhcC
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAIGVDSSPQLVACKAEAHLK-LHQNEDADSCLSNM 218 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~ 218 (543)
++.++....+.++|++.+...+++++.++.....-...+..+|-. .|....+...+...
T Consensus 6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~i 65 (230)
T d2o02a1 6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSI 65 (230)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 556777888899999999999999999998877777777776653 35555665555543
|
| >d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: KaiB-like domain: Adaptive-response sensory-kinase SasA, N-terminal domain species: Synechococcus elongatus [TaxId: 32046]
Probab=89.23 E-value=2.3 Score=29.23 Aligned_cols=81 Identities=7% Similarity=0.024 Sum_probs=55.7
Q ss_pred ceeeeeeCCCCccccchhHhHHHHHhhC-CC--eEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEEEEEcCC-CHHHH
Q 009096 428 VSLVHFKEASSEKCEEISPFVNLLCVRY-PY--VHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKLKEMINP-SHQFL 503 (543)
Q Consensus 428 ~~lv~f~~~~c~~c~~~~p~l~~l~~~~-~~--~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~ 503 (543)
...+..+.+..+.....-..+..+.+++ .+ ..+--||+.+++++++.++|..+||++=..= .+..++.|. -.+++
T Consensus 12 ~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P-~P~q~l~Gs~i~~ql 90 (105)
T d1t4za_ 12 PLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGP-GSRQVLSGIDLTDQL 90 (105)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEES-SCCEEEESSCHHHHH
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCC-CcceeecChhHHHHH
Confidence 3444444444455554444566666665 44 7888899999999999999999999875532 366788887 56676
Q ss_pred HHHHHh
Q 009096 504 EDSANL 509 (543)
Q Consensus 504 ~~~~~~ 509 (543)
+.|.-+
T Consensus 91 ~~w~pr 96 (105)
T d1t4za_ 91 ANQLPQ 96 (105)
T ss_dssp HHHHHH
T ss_pred hhhhhH
Confidence 666543
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=87.18 E-value=0.12 Score=41.54 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.2
Q ss_pred CCceeeeeeCCCCccccchhHhHH---HHHhhCCC-eEEEEEeC
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVN---LLCVRYPY-VHFFKVDV 465 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~---~l~~~~~~-~~~~~~d~ 465 (543)
+.+.++.|+.-+||+|..+.|.+. ++.+.+|+ +.|..+-+
T Consensus 113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~ 156 (195)
T d1un2a_ 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 156 (195)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEEC
T ss_pred CCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEec
Confidence 567899999999999999999874 77778875 77766554
|
| >d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.02 E-value=0.89 Score=31.56 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=56.7
Q ss_pred CCceeeeeeCCCCccccchhHhHHHHHhhCCCeEEEEEeCcCcHHHHHHcCCCcccEEEEEECCeEE-EEEcCC-CHHHH
Q 009096 426 PGVSLVHFKEASSEKCEEISPFVNLLCVRYPYVHFFKVDVEESLAIAKSEGVRTVPTFKIYKNGEKL-KEMINP-SHQFL 503 (543)
Q Consensus 426 ~~~~lv~f~~~~c~~c~~~~p~l~~l~~~~~~~~~~~~d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~-~~~~~ 503 (543)
.+++.+..+.+-|+.|..+...+++++.--+.+.+..-+.+. ...|++.+..+|+.. -++.|. .=.|+
T Consensus 18 ~~~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~~~----------~r~Ps~~i~~~g~~~gI~F~GiP~GhEF 87 (102)
T d1hyua3 18 TKPVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNTLP----------VRKPSFLITNPGSQQGPRFAGSPLGHEF 87 (102)
T ss_dssp CSCEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTTSS----------SCSSEEEEECTTCCCSCEEESCCCGGGH
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEcCCCC----------CCCCeEEEecCCCEeeeEEecCCCcccH
Confidence 467777778888999999999999998877778776544332 346999999888653 467787 77778
Q ss_pred HHHHHhcC
Q 009096 504 EDSANLAP 511 (543)
Q Consensus 504 ~~~~~~~~ 511 (543)
..+|.-.+
T Consensus 88 ~Slilail 95 (102)
T d1hyua3 88 TSLVLALL 95 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.24 E-value=8.2 Score=31.25 Aligned_cols=58 Identities=3% Similarity=-0.036 Sum_probs=40.2
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-ccChhHHHHHhhc
Q 009096 160 HLNRCAESRKIGDWKTVLRETDAAIAI--GVDSSPQLVACKAEAHLK-LHQNEDADSCLSN 217 (543)
Q Consensus 160 ~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~ 217 (543)
++.++....+.++|++.+...+++++. +|.....=...+..+|-. .|....+...+..
T Consensus 7 lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~ 67 (236)
T d1o9da_ 7 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 67 (236)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 556677778889999999999999987 566666666666666543 3444555555544
|
| >d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: KaiB-like domain: Circadian oscillation regulator KaiB species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]
Probab=80.31 E-value=0.12 Score=34.71 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=42.1
Q ss_pred eeeeeCCCCccccchhHhHHHHHhhC-CC-eEEEEEeCcCcHHHHHHcCCCcccEEE
Q 009096 430 LVHFKEASSEKCEEISPFVNLLCVRY-PY-VHFFKVDVEESLAIAKSEGVRTVPTFK 484 (543)
Q Consensus 430 lv~f~~~~c~~c~~~~p~l~~l~~~~-~~-~~~~~~d~~~~~~~~~~~~v~~~Pt~~ 484 (543)
+..|-+...+.....-.-+.++.+++ ++ ..+--||+.+++++|+.++|..+||++
T Consensus 4 L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv 60 (90)
T d1r5pa_ 4 LKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS 60 (90)
T ss_dssp EEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred EEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence 44455656666666666677777665 44 888889999999999999999999954
|