Citrus Sinensis ID: 009103

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---

MGETAGHHPPPPPQAAPPSLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL

ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc

ccccccccccccccccccccccccccccccHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHEHEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcEEEcccccHHEEEEHHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHcccHHHccccccccccccccccccccccccccccccc

mgetaghhpppppqaappslglsrgpiwtpaeQLQQLQYcihsnppwpQALLLAFQHYIVMLGTTVLIsstlvplmggghgdkgRVIQSLLFMSGLNTLLQTLfgtrlptvmgpsaaftlpVLSIindyndgsftsehdRFRHTIRTIQGSLIVSSFINIVLGysgawgnlarffspivIVPFVCVVGLglfmrgfpllgncveiGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAgaynnvpeqtklscrtdrsyllssapwikvpypfqwgtpifraSHVFGMIGAALVTSAESTGTFIAasrfagatappahvlsrsiglqGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGkfgaffasiplpIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLgisipqyfaskttedghgpvrtgggwfndiwntifsspptVAMIVGTVLDntldardtvadrglpwwkpfqhrkgdsrndefysfplrineyiptrfl

mgetaghhpppppqAAPPSLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVadrglpwwkpfqhrkgdsrndefysfplrineyiptrfl

MGETAGHHpppppqaappSLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMiffsifgkfgaffasIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNiyilglslflgisiPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL

*************************PIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKG**RNDEFYSFPLRINEYIP****

****************************************IHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGL****************EFYSFPLRINEYIPTRFL

*******************LGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL

***************************WTP**QLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGLPWWKPFQHRKG***NDEFYSFPLRINEYIPTRFL

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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		543	2.2.26 [Sep-21-2011]
Q8GZD4		551	Nucleobase-ascorbate tran	yes	no	0.968	0.954	0.729	0.0
Q94C70		524	Nucleobase-ascorbate tran	no	no	0.939	0.973	0.590	0.0
Q9SHZ3		520	Nucleobase-ascorbate tran	no	no	0.939	0.980	0.579	1e-176
Q27GI3		532	Nucleobase-ascorbate tran	no	no	0.941	0.960	0.530	1e-157
Q0WPE9		538	Nucleobase-ascorbate tran	no	no	0.961	0.970	0.512	1e-153
Q8RWE9		528	Nucleobase-ascorbate tran	no	no	0.941	0.967	0.522	1e-148
Q8VZQ5		539	Nucleobase-ascorbate tran	no	no	0.935	0.942	0.504	1e-147
P93039		526	Nucleobase-ascorbate tran	no	no	0.937	0.967	0.524	1e-144
Q41760		527	Nucleobase-ascorbate tran	N/A	no	0.937	0.965	0.502	1e-142
O04472		541	Putative nucleobase-ascor	no	no	0.937	0.940	0.482	1e-140

>sp\|Q8GZD4\|NAT3_ARATH Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2	Back alignment and function desciption

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/529 (72%), Positives = 447/529 (84%), Gaps = 3/529 (0%)

Query: 18  PSLGLSR--GPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPL 75
           PS+ ++R  G  W PAEQL  LQYCIHSNP W + ++LAFQHYIVMLGTTVLI++TLV  
Sbjct: 23  PSMAMARNMGTTWPPAEQLHHLQYCIHSNPSWHETVVLAFQHYIVMLGTTVLIANTLVSP 82

Query: 76  MGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFT 135
           MGG  GDK RVIQ++LFMSG+NTLLQTL GTRLPTVMG S A+ LPVLSII DYN+G F 
Sbjct: 83  MGGDPGDKARVIQTILFMSGINTLLQTLIGTRLPTVMGVSFAYVLPVLSIIRDYNNGQFD 142

Query: 136 SEHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRG 195
           SE  RFRHT+RT+QGSLI+SSF+NI++GY  AWGNL R FSPI++VP V VV LGLF+RG
Sbjct: 143 SEKQRFRHTMRTVQGSLIISSFVNIIIGYGQAWGNLIRIFSPIIVVPVVSVVSLGLFLRG 202

Query: 196 FPLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGA 255
           FPLL NCVEIGLPML+LL+I QQYLK    +   I+ER+ALL C+ ++WAFAAILT +GA
Sbjct: 203 FPLLANCVEIGLPMLILLIITQQYLKHAFSRISMILERYALLVCLAIIWAFAAILTVSGA 262

Query: 256 YNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTG 315
           YNNV   TK SCRTDR++L+SSAPWI++PYPFQWGTPIF+ASHVFGM GAA+V SAESTG
Sbjct: 263 YNNVSTATKQSCRTDRAFLMSSAPWIRIPYPFQWGTPIFKASHVFGMFGAAIVASAESTG 322

Query: 316 TFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSR 375
            F AASR AGATAPPAHV+SRSIGLQGIG+L+EGIFGS+ G TASVENVGLLGLT IGSR
Sbjct: 323 VFFAASRLAGATAPPAHVVSRSIGLQGIGVLLEGIFGSITGNTASVENVGLLGLTRIGSR 382

Query: 376 RVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRN 435
           RVVQ+ST FMIFFSIFGKFGAFFASIPLPIFA +YC+LLGIV AVGI+FIQF + NSMRN
Sbjct: 383 RVVQVSTFFMIFFSIFGKFGAFFASIPLPIFAGVYCILLGIVVAVGISFIQFTDTNSMRN 442

Query: 436 IYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLD 495
           +Y++G+SLFL +SI QYF + T+  G+GPVRT GGWFNDI NTIF+S P VA I+ T+LD
Sbjct: 443 MYVIGVSLFLSLSIAQYFLANTSRAGYGPVRTAGGWFNDILNTIFASAPLVATILATILD 502

Query: 496 NTLDARDTVAD-RGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL 543
           NTL+AR    D RG+PWWKPFQHR GD RNDEFYS PLRINE +PTRFL
Sbjct: 503 NTLEARHASDDARGIPWWKPFQHRNGDGRNDEFYSMPLRINELMPTRFL 551

Arabidopsis thaliana (taxid: 3702)

>sp\|Q94C70\|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2	Back alignment and function description

>sp\|Q9SHZ3\|NAT1_ARATH Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2	Back alignment and function description

>sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2	Back alignment and function description

>sp\|Q8RWE9\|NAT5_ARATH Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1	Back alignment and function description

>sp\|Q8VZQ5\|NAT8_ARATH Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1	Back alignment and function description

>sp\|P93039\|NAT4_ARATH Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2	Back alignment and function description

>sp\|Q41760\|LPE1_MAIZE Nucleobase-ascorbate transporter LPE1 OS=Zea mays GN=LPE1 PE=1 SV=2	Back alignment and function description

>sp\|O04472\|NAT10_ARATH Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		543
356552166		548	PREDICTED: nucleobase-ascorbate transpor	0.966	0.958	0.801	0.0
356564217		548	PREDICTED: nucleobase-ascorbate transpor	1.0	0.990	0.786	0.0
255538430		548	purine permease, putative [Ricinus commu	0.998	0.989	0.788	0.0
449446963		548	PREDICTED: nucleobase-ascorbate transpor	0.998	0.989	0.749	0.0
357437955		549	Nucleobase-ascorbate transporter [Medica	1.0	0.989	0.774	0.0
388516839		549	unknown [Medicago truncatula]	1.0	0.989	0.768	0.0
449498678		544	PREDICTED: nucleobase-ascorbate transpor	0.990	0.988	0.744	0.0
225458495		545	PREDICTED: nucleobase-ascorbate transpor	0.965	0.961	0.769	0.0
15225319		551	nucleobase-ascorbate transporter 3 [Arab	0.968	0.954	0.729	0.0
27436380		551	putative transporter [Arabidopsis thalia	0.968	0.954	0.725	0.0

>gi\|356552166\|ref\|XP_003544440.1\| PREDICTED: nucleobase-ascorbate transporter 3-like [Glycine max]	Back alignment and taxonomy information

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/525 (80%), Positives = 460/525 (87%)

Query: 19  SLGLSRGPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGG 78
           +L LSRGP+W PAEQL QL YCIHSNP WP A+LL FQHYIVMLGTTVLI++TLVP MGG
Sbjct: 24  NLALSRGPVWHPAEQLSQLHYCIHSNPSWPVAILLGFQHYIVMLGTTVLIATTLVPAMGG 83

Query: 79  GHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEH 138
            HGDK RVIQSLLFMSGLNTLLQT FG+RLPTVMG S AF LPVLSIINDY D +F SEH
Sbjct: 84  DHGDKARVIQSLLFMSGLNTLLQTWFGSRLPTVMGGSFAFLLPVLSIINDYTDRTFPSEH 143

Query: 139 DRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGFPL 198
           +RF +TIRTIQGSLIVSSF+NI LG+S  WGNL R FSPI+IVP VCV GLGLF RGFPL
Sbjct: 144 ERFIYTIRTIQGSLIVSSFVNIFLGFSKTWGNLTRLFSPIIIVPLVCVAGLGLFARGFPL 203

Query: 199 LGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNN 258
           + NCV+IGLPML+LLVI QQYLKRLH  A  ++ERFALL CI V+WAFAAILT AGAYN 
Sbjct: 204 VANCVQIGLPMLILLVIIQQYLKRLHHAALQVLERFALLLCIAVIWAFAAILTVAGAYNT 263

Query: 259 VPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFI 318
              QT++SCRTDRSYL+SSAPWIKVPYPFQWGTPIFRASHVFGM+GAALV+SAESTG F 
Sbjct: 264 AKSQTQVSCRTDRSYLMSSAPWIKVPYPFQWGTPIFRASHVFGMMGAALVSSAESTGAFF 323

Query: 319 AASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVV 378
           AA+R +GAT PPAHVLSRSIG+QGIGML+EGIFGS+VGTT SVENVGLLGLTHIGSRRVV
Sbjct: 324 AAARLSGATPPPAHVLSRSIGMQGIGMLLEGIFGSIVGTTVSVENVGLLGLTHIGSRRVV 383

Query: 379 QISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYI 438
           QIS  FMIFFSIFGKFGAFFASIPLPIFAAIYCVL GIVAA GI+FIQFAN NS+RNIY+
Sbjct: 384 QISCGFMIFFSIFGKFGAFFASIPLPIFAAIYCVLFGIVAATGISFIQFANTNSIRNIYV 443

Query: 439 LGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTL 498
           LGL+LFL ISIPQYF   T  DGHGPVRTGGGWFNDI NTIFSS PTVA+IVGT++DNTL
Sbjct: 444 LGLTLFLAISIPQYFVMNTAPDGHGPVRTGGGWFNDILNTIFSSAPTVAIIVGTLVDNTL 503

Query: 499 DARDTVADRGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL 543
           + + T  DRGLPWW PFQ+RKGD RNDEFY  PLRINEY+PTRFL
Sbjct: 504 EGKQTAVDRGLPWWGPFQNRKGDVRNDEFYRLPLRINEYMPTRFL 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356564217\|ref\|XP_003550352.1\| PREDICTED: nucleobase-ascorbate transporter 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|255538430\|ref\|XP_002510280.1\| purine permease, putative [Ricinus communis] gi\|223550981\|gb\|EEF52467.1\| purine permease, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449446963\|ref\|XP_004141239.1\| PREDICTED: nucleobase-ascorbate transporter 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357437955\|ref\|XP_003589253.1\| Nucleobase-ascorbate transporter [Medicago truncatula] gi\|355478301\|gb\|AES59504.1\| Nucleobase-ascorbate transporter [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388516839\|gb\|AFK46481.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449498678\|ref\|XP_004160603.1\| PREDICTED: nucleobase-ascorbate transporter 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225458495\|ref\|XP_002282229.1\| PREDICTED: nucleobase-ascorbate transporter 3 [Vitis vinifera] gi\|302142380\|emb\|CBI19583.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|15225319|ref|NP_180219.1| nucleobase-ascorbate transporter 3 [Arabidopsis thaliana] gi|122064605|sp|Q8GZD4.2|NAT3_ARATH RecName: Full=Nucleobase-ascorbate transporter 3; Short=AtNAT3 gi|13877635|gb|AAK43895.1|AF370518_1 putative membrane transporter [Arabidopsis thaliana] gi|2739376|gb|AAC14499.1| putative membrane transporter [Arabidopsis thaliana] gi|31711970|gb|AAP68341.1| At2g26510 [Arabidopsis thaliana] gi|330252754|gb|AEC07848.1| nucleobase-ascorbate transporter 3 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|27436380\|gb\|AAO13361.1\| putative transporter [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		543
TAIR\|locus:2066190		551	PDE135 "pigment defective embr	0.966	0.952	0.685	7.6e-199
TAIR\|locus:2040874		524	AT2G34190 [Arabidopsis thalian	0.939	0.973	0.549	4e-154
TAIR\|locus:2060076		520	AT2G05760 [Arabidopsis thalian	0.939	0.980	0.536	1.4e-151
TAIR\|locus:2170783		532	AT5G62890 [Arabidopsis thalian	0.941	0.960	0.487	3e-133
TAIR\|locus:2158829		528	AT5G49990 [Arabidopsis thalian	0.941	0.967	0.479	5.7e-130
TAIR\|locus:2202700		538	NAT7 "nucleobase-ascorbate tra	0.948	0.957	0.473	7.3e-130
TAIR\|locus:2031085		526	AT1G49960 [Arabidopsis thalian	0.937	0.967	0.487	1.4e-128
TAIR\|locus:2194631		539	NAT8 "nucleobase-ascorbate tra	0.931	0.938	0.466	4.9e-124
TAIR\|locus:2034104		541	AT1G65550 [Arabidopsis thalian	0.930	0.933	0.442	2.7e-116
TAIR\|locus:2042036		709	NAT12 "nucleobase-ascorbate tr	0.425	0.325	0.370	7.1e-75

TAIR\|locus:2066190 PDE135 "pigment defective embryo 135" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
 Identities = 362/528 (68%), Positives = 418/528 (79%)

Query:    19 SLGLSR--GPIWTPAEQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLM 76
             S+ ++R  G  W PAEQL  LQYCIHSNP W + ++LAFQHYIVMLGTTVLI++TLV  M
Sbjct:    24 SMAMARNMGTTWPPAEQLHHLQYCIHSNPSWHETVVLAFQHYIVMLGTTVLIANTLVSPM 83

Query:    77 GGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTS 136
             GG  GDK RVIQ++LFMSG+NTLLQTL GTRLPTVMG S A+ LPVLSII DYN+G F S
Sbjct:    84 GGDPGDKARVIQTILFMSGINTLLQTLIGTRLPTVMGVSFAYVLPVLSIIRDYNNGQFDS 143

Query:   137 EHDRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGLFMRGF 196
             E  RFRHT+RT+QGSLI+SSF+NI++GY  AWGNL R FSPI++VP V VV LGLF+RGF
Sbjct:   144 EKQRFRHTMRTVQGSLIISSFVNIIIGYGQAWGNLIRIFSPIIVVPVVSVVSLGLFLRGF 203

Query:   197 PLLGNCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAY 256
             PLL NCVEIGLPML+LL+I QQYLK    +   I+ER+ALL C+ ++WAFAAILT +GAY
Sbjct:   204 PLLANCVEIGLPMLILLIITQQYLKHAFSRISMILERYALLVCLAIIWAFAAILTVSGAY 263

Query:   257 NNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGT 316
             NNV   TK SCRTDR++L+SSAPWI++PYPFQWGTPIF+ASHVFGM GAA+V SAESTG 
Sbjct:   264 NNVSTATKQSCRTDRAFLMSSAPWIRIPYPFQWGTPIFKASHVFGMFGAAIVASAESTGV 323

Query:   317 FIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRR 376
             F AASR AGATAPPAHV+SRSIGLQGIG+L+EGIFGS+ G TASVENVGLLGLT IGSRR
Sbjct:   324 FFAASRLAGATAPPAHVVSRSIGLQGIGVLLEGIFGSITGNTASVENVGLLGLTRIGSRR 383

Query:   377 VVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNX 436
             VVQ+ST FM               IPLPIFA +YC+LLGIV AVGI+FIQF + NSMRN 
Sbjct:   384 VVQVSTFFMIFFSIFGKFGAFFASIPLPIFAGVYCILLGIVVAVGISFIQFTDTNSMRNM 443

Query:   437 XXXXXXXXXXXXXPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDN 496
                           QYF + T+  G+GPVRT GGWFNDI NTIF+S P VA I+ T+LDN
Sbjct:   444 YVIGVSLFLSLSIAQYFLANTSRAGYGPVRTAGGWFNDILNTIFASAPLVATILATILDN 503

Query:   497 TLDARDTVAD-RGLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRFL 543
             TL+AR    D RG+PWWKPFQHR GD RNDEFYS PLRINE +PTRFL
Sbjct:   504 TLEARHASDDARGIPWWKPFQHRNGDGRNDEFYSMPLRINELMPTRFL 551

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2040874 AT2G34190 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060076 AT2G05760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170783 AT5G62890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2158829 AT5G49990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202700 NAT7 "nucleobase-ascorbate transporter 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031085 AT1G49960 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2194631 NAT8 "nucleobase-ascorbate transporter 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034104 AT1G65550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042036 NAT12 "nucleobase-ascorbate transporter 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41760	LPE1_MAIZE	No assigned EC number	0.5029	0.9373	0.9658	N/A	no
Q8GZD4	NAT3_ARATH	No assigned EC number	0.7296	0.9686	0.9546	yes	no
Q9Z2J0	S23A1_MOUSE	No assigned EC number	0.3173	0.9318	0.8363	yes	no
Q9UHI7	S23A1_HUMAN	No assigned EC number	0.3233	0.9134	0.8294	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.II.3007.1	annotation not avaliable (517 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.31020001	Predicted protein (123 aa)	•	0.484

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		543
pfam00860		389	pfam00860, Xan_ur_permease, Permease family	7e-57
COG2233		451	COG2233, UraA, Xanthine/uracil permeases [Nucleoti	3e-55
TIGR03173		406	TIGR03173, pbuX, xanthine permease	8e-43
TIGR00801		412	TIGR00801, ncs2, uracil-xanthine permease	4e-34
PRK10720		428	PRK10720, PRK10720, uracil transporter; Provisiona	1e-15
PRK11412		433	PRK11412, PRK11412, putative uracil/xanthine trans	1e-15
TIGR03616		429	TIGR03616, RutG, pyrimidine utilization transport	4e-14
COG0659		554	COG0659, SUL1, Sulfate permease and related transp	0.003

>gnl\|CDD\|216158 pfam00860, Xan_ur_permease, Permease family	Back alignment and domain information

 Score =  194 bits (496), Expect = 7e-57
 Identities = 115/425 (27%), Positives = 198/425 (46%), Gaps = 53/425 (12%)

Query: 48  PQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTL-FGT 106
            Q LLL  QH + M   T+++   +   +G G  D  ++I +    SG+ TLLQTL FG 
Sbjct: 1   GQLLLLGLQHLLAMFAATIVVPLLVGDALGLGAEDLAQLISATFLASGIGTLLQTLIFGI 60

Query: 107 RLPTVMGPS-AAFTLPVLSI-INDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGY 164
           RLP  +G S A  T  +++I   D+               +  + G+++V+  +  ++ +
Sbjct: 61  RLPIYLGSSFAFVTALMIAIGGADWGI------------ALAGLFGAVLVAGVLFTLISF 108

Query: 165 SGAWGNLARFFSPIVIVPFVCVVGLGL---FMRGFPLLGNCVE-----------IGLPML 210
           +G  G LAR F P+V  P V ++GL L    ++G        +           + + +L
Sbjct: 109 TGLRGRLARLFPPVVTGPVVLLIGLSLAPIAVKGAGGGWAIADGLTVGLLDLLGLAVVVL 168

Query: 211 VLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTD 270
            ++++   +LK           +  +L  I   W  A  +                   +
Sbjct: 169 AVILLLSVFLKGF-------FRQGPILIGIIAGWLLALFMG----------------IVN 205

Query: 271 RSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPP 330
            S  +  APW ++P+PF +GTP+F    +  ++  ALV   ESTG   A ++ +G    P
Sbjct: 206 FSPEVMDAPWFQLPHPFPFGTPLFNPGLILTVLAVALVAIVESTGDIRAVAKVSGRDLKP 265

Query: 331 AHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSI 390
              L R +   G+  L+ G+FG+   TT   EN+G++ LT + SRRV   +   +I   +
Sbjct: 266 KPDLRRGLLADGLATLLSGLFGAF-PTTTYAENIGVVALTKVYSRRVGVTAGVILILLGL 324

Query: 391 FGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNIYILGLSLFLGISIP 450
             KF A F+SIP P+   +  V+ G++A  G++ +   + +S RN+ I+ +SL LG+ I 
Sbjct: 325 IPKFAALFSSIPSPVLGGVMLVMFGMIAGSGVSNLITVDLDSARNLLIIAVSLVLGLGIS 384

Query: 451 QYFAS 455
                
Sbjct: 385 TVPEI 389

This family includes permeases for diverse substrates such as xanthine, uracil, and vitamin C. However many members of this family are functionally uncharacterized and may transport other substrates. Members of this family have ten predicted transmembrane helices. Length = 389

>gnl\|CDD\|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|234136 TIGR03173, pbuX, xanthine permease	Back alignment and domain information

>gnl\|CDD\|233133 TIGR00801, ncs2, uracil-xanthine permease	Back alignment and domain information

>gnl\|CDD\|236744 PRK10720, PRK10720, uracil transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|183124 PRK11412, PRK11412, putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|132655 TIGR03616, RutG, pyrimidine utilization transport protein G	Back alignment and domain information

>gnl\|CDD\|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		543
KOG1292		510	consensus Xanthine/uracil transporters [Nucleotide	100.0
COG2233		451	UraA Xanthine/uracil permeases [Nucleotide transpo	100.0
PRK11412		433	putative uracil/xanthine transporter; Provisional	100.0
TIGR03616		429	RutG pyrimidine utilization transport protein G. T	100.0
PRK10720		428	uracil transporter; Provisional	100.0
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	100.0
TIGR03173		406	pbuX xanthine permease. All the seed members of th	100.0
PF00860		389	Xan_ur_permease: Permease family; InterPro: IPR006	100.0
COG2252		436	Xanthine/uracil/vitamin C permease [Nucleotide tra	100.0
TIGR00843		395	benE benzoate transporter. The benzoate transporte	99.93
COG0659		554	SUL1 Sulfate permease and related transporters (MF	99.92
PF03594		378	BenE: Benzoate membrane transport protein; InterPr	99.88
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	99.86
PRK11660		568	putative transporter; Provisional	99.86
COG3135		402	BenE Uncharacterized protein involved in benzoate	99.83
PF00916		280	Sulfate_transp: Sulfate transporter family; InterP	99.53
KOG0236		665	consensus Sulfate/bicarbonate/oxalate exchanger SA	99.52
TIGR00834		900	ae anion exchange protein. They preferentially cat	98.54
KOG1172		876	consensus Na+-independent Cl/HCO3 exchanger AE1 an	98.51
PF11840		492	DUF3360: Protein of unknown function (DUF3360); In	97.67
PF00955		510	HCO3_cotransp: HCO3- transporter family Only parti	96.86

>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=5.8e-90  Score=715.56  Aligned_cols=500  Identities=55%  Similarity=1.001  Sum_probs=471.8

Q ss_pred             cceecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh-HHHHHHHHHHHHHHHHHHHHhcCCcceEeccc
Q 009103           37 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDK-GRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPS  115 (543)
Q Consensus        37 ~~y~~~~~pp~~~~~~~GlQh~l~m~~~~i~vPiila~a~Gl~~~~~-~~li~~tl~~sGI~Tllq~~~G~rlPiv~Gps  115 (543)
                      +.|+++|.|||...+++|+||++.|++.++++|.+++.+++.+++|. +.+||+++|++||.|++|++||.|||+++|+|
T Consensus         1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S   80 (510)
T KOG1292|consen    1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS   80 (510)
T ss_pred             CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence            36999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhcCCCCCCCcc----chhhccHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCccchHHHHHHHHHHH
Q 009103          116 AAFTLPVLSIINDYNDGSFTSEH----DRFRHTIRTIQGSLIVSSFINIVLGYSGAWGNLARFFSPIVIVPFVCVVGLGL  191 (543)
Q Consensus       116 f~~i~~~~~i~~~~g~~~~~~~~----~~~~~~~~~~~ga~lv~Gli~illg~~gl~~~l~~~~Pp~V~G~~l~lIGl~l  191 (543)
                      |+|+++..++.....+.+..+++    ++|...+++++||.++++++++++|++|+.+++.|++.|+.+.+.++++|+++
T Consensus        81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l  160 (510)
T KOG1292|consen   81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL  160 (510)
T ss_pred             eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence            99999999998765566644433    37999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccccchhhhHHHHHHHHHHHHHH--hhhhcc--cchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 009103          192 FMRGFPLLGNCVEIGLPMLVLLVICQQY--LKRLHP--KAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKLSC  267 (543)
Q Consensus       192 ~~~~~~~~~~~~~i~l~~l~l~i~l~~~--~~~~~~--~~~~~lr~~aiLigivvG~i~a~~lg~~~~~~~~~~~~~~~~  267 (543)
                      +..+.+.++.||.+++..+++++++++|  .++...  .+++.++++++++++.+.|++|.++...+.|+.++..++.++
T Consensus       161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~  240 (510)
T KOG1292|consen  161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC  240 (510)
T ss_pred             HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence            9999999999999999999999999999  433222  235678999999999999999999999999988777889999


Q ss_pred             ccCccccCCCCCccccCccccccccccchhHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCCCCCcchhhhchHHHH
Q 009103          268 RTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLV  347 (543)
Q Consensus       268 ~vd~~~~v~~a~~~~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~eslg~~~av~~~~~~~~~~~~~~~r~l~~dGl~~il  347 (543)
                      |+|-+..++++||+.+|+|++||.|+||.+....++...++.++||+|++.+++|.+.++.++++.+|||+..||+++++
T Consensus       241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL  320 (510)
T KOG1292|consen  241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLL  320 (510)
T ss_pred             cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHH
Confidence            99998878899999999999999999999999999999999999999999999999998888889999999999999999


Q ss_pred             hhhcCCCCccccccchhhHHhhhccCcchHHHHHHHHHHHHHHhhhHHHHHHhCCchhHHHHHHHHHHHHHHHHhHhHhh
Q 009103          348 EGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQF  427 (543)
Q Consensus       348 sglfG~~~~tt~s~en~G~i~~Tgv~SR~~~~~ag~~li~l~~~pk~~~ll~~IP~~Vlgg~li~~fg~i~~~Gi~~l~~  427 (543)
                      +|+||+..++|.++||+|+++.||+.||++.+++|.++++++++.||++++++||.|++||++++.|+++...|+++++.
T Consensus       321 ~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf  400 (510)
T KOG1292|consen  321 AGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQF  400 (510)
T ss_pred             HHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            99999999998888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccchhhhhHHHhhhhhhHhhhhccccCCCCCccccCccccchhhHhccchhHHHHHHHHHHhhhcCCCCCcccc
Q 009103          428 ANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADR  507 (543)
Q Consensus       428 ~~~~~~rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~lp~~l~~~l~~gi~~g~l~aiiLn~~~~~~~~~~~~  507 (543)
                      +|+|+.||.+|+|+|+++|+.+|++|+++     .+|++|..+|++++++.++++.+.+|+++|++||++.++. +||||
T Consensus       401 ~dlns~RNl~IlG~Sif~gLsip~yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~ga-tr~~R  474 (510)
T KOG1292|consen  401 VDLNSSRNLFILGFSIFLGLSIPQYFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPGA-TREQR  474 (510)
T ss_pred             eccccccchhhhhHHHHHhccHHHHHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCCC-ChHhc
Confidence            99999999999999999999999999985     4579999999999999999999999999999999999954 89999


Q ss_pred             CCCcccccCCCCCCCCCCcccCCCccccccCCCCC
Q 009103          508 GLPWWKPFQHRKGDSRNDEFYSFPLRINEYIPTRF  542 (543)
Q Consensus       508 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (543)
                      |++||+++++.+.|.|+||+|+||+++||+||...
T Consensus       475 G~~~w~~~~~~~~d~~~~e~Y~lP~~~n~~f~~~~  509 (510)
T KOG1292|consen  475 GLRWWDKFETFNGDVRNEEFYSLPFNLNRFFPRIP  509 (510)
T ss_pred             CCcchhccccccCCccccccccCcHHHHhhcccCC
Confidence            99999999999999999999999999999999753

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK11412 putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>TIGR03616 RutG pyrimidine utilization transport protein G	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

>TIGR03173 pbuX xanthine permease	Back alignment and domain information

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []	Back alignment and domain information

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related	Back alignment and domain information

>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00834 ae anion exchange protein	Back alignment and domain information

>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		543
3qe7_A		429	Crystal Structure Of Uracil Transporter--Uraa Lengt		3e-05

>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa Length = 429

Back alignment and structure

Iteration: 1

Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%) Query: 277 SAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSR 336 +A W +P + TP F + ++ AALV AE G + + L R Sbjct: 209 NAHWFALPTLY---TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHR 265 Query: 337 SIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXX 396 S+ G+ ++ G FGS TT EN+G++ +T + S V+ + F Sbjct: 266 SMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAA 324 Query: 397 XXXXIPLPIFAAIYCVLLGIVAAVGI 422 IPLP+ + +L G++ A GI Sbjct: 325 AIQMIPLPVMGGVSLLLYGVIGASGI 350

PyMOL of 3qe7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		543
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	3e-45

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli} Length = 429	Back alignment and structure

 Score =  163 bits (416), Expect = 3e-45
 Identities = 94/425 (22%), Positives = 161/425 (37%), Gaps = 71/425 (16%)

Query: 41  IHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLL 100
           +   PP  Q + L+ QH   M G TVL     VP++   +        ++L  +G+ TLL
Sbjct: 8   VSERPPLLQTIPLSLQHLFAMFGATVL-----VPVLFHIN------PATVLLFNGIGTLL 56

Query: 101 QTL-FGTRLPTVMGPSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFIN 159
                  ++P  +G S AF  PVL ++                       G  I+   + 
Sbjct: 57  YLFICKGKIPAYLGSSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLF 101

Query: 160 IVLG---YSGAWGNLARFFSPIVIVPFVCVVGLGL---------FMRGFPLLGNCVEIGL 207
            ++         G L   F P  +   V V+GL L          +       +   I +
Sbjct: 102 CLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIII 161

Query: 208 PMLVLLVI--CQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNVPEQTKL 265
            +  L V        +         +    +L  + V +A +  +   G  +  P     
Sbjct: 162 SITTLAVTVLGSVLFRG-------FLAIIPILIGVLVGYALSFAM---GIVDTTP----- 206

Query: 266 SCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAG 325
                    + +A W  +P  +   TP F    +  ++ AALV  AE  G  +  +    
Sbjct: 207 ---------IINAHWFALPTLY---TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVK 254

Query: 326 ATAPPAHVLSRSIGLQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFM 385
                   L RS+   G+  ++ G FGS   TT   EN+G++ +T + S  V+  +  F 
Sbjct: 255 KDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFA 313

Query: 386 IFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAAVGITFIQFA--NNNSMRNIYILGLSL 443
           I  S  GK  A    IPLP+   +  +L G++ A GI  +  +  + N  +N+ +  + L
Sbjct: 314 ILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVIL 373

Query: 444 FLGIS 448
            +G+S
Sbjct: 374 IIGVS 378

PyMOL of 3qe7

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		543
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	100.0

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=8.7e-69  Score=573.37  Aligned_cols=391  Identities=25%  Similarity=0.404  Sum_probs=349.0

Q ss_pred             cccceecCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh-cCCcceEec
Q 009103           35 QQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLF-GTRLPTVMG  113 (543)
Q Consensus        35 ~~~~y~~~~~pp~~~~~~~GlQh~l~m~~~~i~vPiila~a~Gl~~~~~~~li~~tl~~sGI~Tllq~~~-G~rlPiv~G  113 (543)
                      .|+.|++|||+|+++++++|+||+++|+++++++|+++    |+|+       +++++++|++|++|+++ |+|+|.++|
T Consensus         2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G   70 (429)
T 3qe7_A            2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG   70 (429)
T ss_dssp             --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred             CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence            46789999999999999999999999999999999997    7886       48999999999999987 899999999


Q ss_pred             cchhhHHHHHHHHhhcCCCCCCCccchhhccHHHHHHHHHHHHHHHHHHhhh--hhH-HHHhhhcCccchHHHHHHHHHH
Q 009103          114 PSAAFTLPVLSIINDYNDGSFTSEHDRFRHTIRTIQGSLIVSSFINIVLGYS--GAW-GNLARFFSPIVIVPFVCVVGLG  190 (543)
Q Consensus       114 psf~~i~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~ga~lv~Gli~illg~~--gl~-~~l~~~~Pp~V~G~~l~lIGl~  190 (543)
                      ++|+|++++..+.+               ++|++++|+++++|+++++++++  +++ +|++|+|||+|+|.++++||++
T Consensus        71 ~sfafi~~~~~i~~---------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~  135 (429)
T 3qe7_A           71 SSFAFISPVLLLLP---------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLE  135 (429)
T ss_dssp             ECGGGHHHHHHHGG---------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHh---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHH
Confidence            99999998877653               35999999999999999999987  554 7999999999999999999999


Q ss_pred             HHHhhhcccc-----------chhhhHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 009103          191 LFMRGFPLLG-----------NCVEIGLPMLVLLVICQQYLKRLHPKAHFIVERFALLFCIGVVWAFAAILTAAGAYNNV  259 (543)
Q Consensus       191 l~~~~~~~~~-----------~~~~i~l~~l~l~i~l~~~~~~~~~~~~~~lr~~aiLigivvG~i~a~~lg~~~~~~~~  259 (543)
                      +++.++++.+           .++.+++.+++++++++++.|       +++|++++|+|+++||++++.+|..      
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~~------  202 (429)
T 3qe7_A          136 LAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGIV------  202 (429)
T ss_dssp             HHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcCC------
Confidence            9998876532           257788888888877766554       4578999999999999999999853      


Q ss_pred             CcccccccccCccccCCCCCccccCccccccccccchhHHHHHHHHHHHHHHHhHhHHHHHHhhhCCCCCCCCCCCcchh
Q 009103          260 PEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIG  339 (543)
Q Consensus       260 ~~~~~~~~~vd~~~~v~~a~~~~~P~~~~fg~P~f~~~~i~~~~~~~lv~~~eslg~~~av~~~~~~~~~~~~~~~r~l~  339 (543)
                                |++. +.+++|+++|.   |+.|+||++++..++++++++++|++|++.++++.++++.+++++.||++.
T Consensus       203 ----------d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~  268 (429)
T 3qe7_A          203 ----------DTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF  268 (429)
T ss_dssp             ----------TSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHH
T ss_pred             ----------Cccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHH
Confidence                      4442 56688999995   567899999999999999999999999999999999866556789999999


Q ss_pred             hhchHHHHhhhcCCCCccccccchhhHHhhhccCcchHHHHHHHHHHHHHHhhhHHHHHHhCCchhHHHHHHHHHHHHHH
Q 009103          340 LQGIGMLVEGIFGSVVGTTASVENVGLLGLTHIGSRRVVQISTAFMIFFSIFGKFGAFFASIPLPIFAAIYCVLLGIVAA  419 (543)
Q Consensus       340 ~dGl~~ilsglfG~~~~tt~s~en~G~i~~Tgv~SR~~~~~ag~~li~l~~~pk~~~ll~~IP~~Vlgg~li~~fg~i~~  419 (543)
                      +||++|+++|+||++|.|+|+ ||+|++..||++||++.+.+|+++++++++||++++++.||.||+||+++++||++..
T Consensus       269 adGla~i~~glfGg~p~Tt~~-en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~  347 (429)
T 3qe7_A          269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGA  347 (429)
T ss_dssp             HHHHHHHHHHHHTCCCEEECH-HHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcchHH-HhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhH--hhccCCCcccchhhhhHHHhhhhhhHhhhhccccCCCCCccccCccccchhhHhccchhHHHHHHHHHHhhh
Q 009103          420 VGITFI--QFANNNSMRNIYILGLSLFLGISIPQYFASKTTEDGHGPVRTGGGWFNDIWNTIFSSPPTVAMIVGTVLDNT  497 (543)
Q Consensus       420 ~Gi~~l--~~~~~~~~rn~~Ivg~sl~~Gl~~P~~~~~~~~~~~~~~~~~~~~~lp~~l~~~l~~gi~~g~l~aiiLn~~  497 (543)
                      +|+|++  +++|++++||.+|+|+++.+|++.-.                    +|  ++.+..||+++|++++++||++
T Consensus       348 ~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~  405 (429)
T 3qe7_A          348 SGIRVLIESKVDYNKAQNLILTSVILIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLI  405 (429)
T ss_dssp             HHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHH
Confidence            999999  89999988999999999999997421                    22  3456789999999999999999


Q ss_pred             cCCC
Q 009103          498 LDAR  501 (543)
Q Consensus       498 ~~~~  501 (543)
                      +|++
T Consensus       406 l~~~  409 (429)
T 3qe7_A          406 FKLI  409 (429)
T ss_dssp             HTCC
T ss_pred             hcCc
Confidence            9964

PyMOL of 3qe7

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00