Citrus Sinensis ID: 009110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
Protein Sequence
MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEcccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEcccccccccEEEccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHccccccHHHHHHHHcccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccccccccEEEEccccccccccHHHHHHHHccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEcccEEEccEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEEcccccccccccccccccccccccccEEEEccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtcsstmqLSQELNIYnkfgcsnlyttgkgrLVHINLSSLAMRRDAWGLNLLshlcgplnpistkcNVFICRSvlapggidipVLKSAAAAVLTRsydtlrgnpviLRLIPAAALVAFAAWGLVPLVRLGRTiflnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICreldplvlpsetsqgVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTeandadstdarnmgfnfaGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMihatqpfviNEWIQTKIQGYEVSGtvehvgwwsptiirgddreavhipnhkfTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFleninpesqslNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHrarmatpirtvqkiysepdlenipfadtifthsraaanrpflliepsykissddkIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Flexible Loop (DISEMBL)
MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLnrtdgswkrsRTHYILTSYLQPLLLWTGVTLICRELDPLVlpsetsqgvKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLeninpesqslnILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLliepsykissddkIKASTRaarneekirrlnqpqnlilrhihrldwyqllttkrarqy
Low Complexity Region (SEG)
MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPaaalvafaaWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWltagglgtvlltlagREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered region (IsUnstruct)
***********ELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSY***************************QNLILRHIHRLDWYQLLTT******
Disordered Region (DISOPRED)
********LSQELNIYNKFGC**********LVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV***********************************************************************IHRLDWYQLLTTK*****
Disordered Region (DISEMBL)
********LSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Disordered Region (DISPRO)
*TCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKIS*******************RLNQPQNLILRHIHRLDWYQLLTTKRARQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQPQNLILRHIHRLDWYQLLTTKRARQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	543	2.2.26 [Sep-21-2011]
Q8L7W1	678	Mechanosensitive ion chan	yes	no	0.902	0.722	0.654	0.0
Q56X46	673	Mechanosensitive ion chan	no	no	0.924	0.745	0.626	0.0
P0AEB5	343	MscS family inner membran	N/A	no	0.418	0.661	0.321	4e-27
P0AEB6	343	MscS family inner membran	N/A	no	0.418	0.661	0.321	4e-27
O66994	368	Uncharacterized MscS fami	yes	no	0.430	0.635	0.268	7e-16
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.405	0.353	0.265	6e-15
O25170	623	Uncharacterized MscS fami	yes	no	0.405	0.353	0.265	8e-15
Q58543	361	Large-conductance mechano	yes	no	0.298	0.448	0.284	1e-09
Q8VZL4	497	Mechanosensitive ion chan	no	no	0.384	0.420	0.241	4e-09
O07594	371	Uncharacterized MscS fami	yes	no	0.388	0.568	0.206	7e-09

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/501 (65%), Positives = 403/501 (80%), Gaps = 11/501 (2%)

Query: 7   MQLSQELNIYNKFGCSNLYTTGKGR----LVHINLSSLAMRRDAWGLNLLSHLCGPLNPI 62
           + LS +LN++     S  + +  G+    L    LSS A R+D W L LL  L G + P+
Sbjct: 8   LPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPV 67

Query: 63  STKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALVAFAAW 121
           S++CN F+CRS L+PG G + P+LKS A  + TR YD L GNP +++LIPA  ++AFA W
Sbjct: 68  SSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALGGNPHLVKLIPAVGILAFATW 126

Query: 122 GLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET 180
           GL PL+RL RT +F    D + ++S T YI+ SYLQPLLLW+G  L+CR LDP+VLPS  
Sbjct: 127 GLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSA 186

Query: 181 SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY 240
            Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N+    D RNMGF+FAGKAVY
Sbjct: 187 GQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNP--ADTRNMGFSFAGKAVY 244

Query: 241 TAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINE 300
           TA WVAA SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREI TNFLSS+MIHAT+PFV+NE
Sbjct: 245 TAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNE 304

Query: 301 WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY 360
           WIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+F+VN+VRNL+QKTHWRIKT+
Sbjct: 305 WIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTH 364

Query: 361 LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS 420
           LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE+I+PE+Q+L IL+SCFVKTS
Sbjct: 365 LAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTS 424

Query: 421 RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA 480
           RFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E +++   F+D +F  ++AA 
Sbjct: 425 RFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF--NQAAM 482

Query: 481 NRPFLLIEPSYKISSDDKIKA 501
           NR ++LIEPSYKI+SDD  K+
Sbjct: 483 NRRYMLIEPSYKINSDDNSKS 503

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/512 (62%), Positives = 396/512 (77%), Gaps = 10/512 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLSSLAM-----RRDAWGLNLLSHL 55
           M    T+QLS  L +       N   +   R +HI+   L++     +     + L ++L
Sbjct: 1   MALYGTLQLSHSLGLCRNQRFCNPENSAMRRRLHISNGPLSLGVPLGQHGFSNILLSNYL 60

Query: 56  CGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 115
             P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+PA AL
Sbjct: 61  RRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLVPAVAL 119

Query: 116 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
           + F+ WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR LDP+V
Sbjct: 120 LVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVV 179

Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
           LP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E   ++ +D RNMGF FA
Sbjct: 180 LPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSET--SNPSDTRNMGFQFA 237

Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 295
           GKA+Y+AVWVAAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI TNFLSSVMIHAT+P
Sbjct: 238 GKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRP 297

Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
           FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+QKTHW
Sbjct: 298 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHW 357

Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
           RIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+IL+SC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISC 417

Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 475
           FVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF ++++  
Sbjct: 418 FVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY-- 475

Query: 476 SRAAANRPFLLIEPSYKISSDDKIKASTRAAR 507
               + RP +LIEP+YKI+ +DK K+  RAA+
Sbjct: 476 GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 210 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 269
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 270 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 329
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 330 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 389
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 390 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 448
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 449 TPIRTV 454
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 19/246 (7%)

Query: 210 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 269
           QQI+K        D T AR M      + +   + V  V L+ E  G S    LT GG+G
Sbjct: 104 QQIKK------GRDITSARIMS-----RIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIG 152

Query: 270 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 329
            + + +AG++I +NF S +M++  +PF I +WI++  +  E  GTV  +GW    I   D
Sbjct: 153 GLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFD 210

Query: 330 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVE 389
           +R  +++PN  F+   V N  + T+ RI T + + + D  KV  IV  +R++L  +P ++
Sbjct: 211 NR-PLYVPNSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAID 269

Query: 390 QQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 448
           Q    R+  L   N     SLNI+V CF KT+ + E+L  ++ + L ++ ++  H A  A
Sbjct: 270 Q----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFA 325

Query: 449 TPIRTV 454
            P +T+
Sbjct: 326 FPSQTL 331

Escherichia coli O157:H7 (taxid: 83334)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 12/246 (4%)

Query: 210 QQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLG 269
            +I +F  +    D   A  +G +F  K +   V V   +  ++  G +    L + GL 
Sbjct: 126 NKIVEFFVKVGGKDF--AEEVG-DFILKILKAFVVVIVGASLLQEWGVNIGAILASVGLL 182

Query: 270 TVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGD 329
            + ++LA ++ F N LS ++I   +P  + E ++ K    +  G+VE +G  S T IR  
Sbjct: 183 GLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK----DFMGSVEDIGLRS-TKIRTF 237

Query: 330 DREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV 388
           D+  V IPN     N V N +++   R++ Y+ + +     ++ +I+ ++R++L ++P V
Sbjct: 238 DKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKREQLENILKEIRELLKEHPGV 297

Query: 389 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA 448
            +      V+ EN      SLNIL+  +  T+ +EEYL + E I L ++ ++  + +  A
Sbjct: 298 AKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKIIEDINLKIMEIVEKNGSSFA 354

Query: 449 TPIRTV 454
            P R+V
Sbjct: 355 FPSRSV 360

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 233 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 292
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 293 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 351
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 352 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 402
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDI 537

Query: 403 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 444
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 445 ARMATPIRTVQKIYSE 460
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 36/256 (14%)

Query: 233 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHA 292
           N   K VY  +++ A+   ++ LGF+    + + G+G + + LA +++  NF +SV++  
Sbjct: 363 NLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLL 422

Query: 293 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS-Q 351
              F   +WI   + G EV GTV  +G    T IR  D   + +PN +     +RN S +
Sbjct: 423 DNSFSQGDWI---VCG-EVEGTVVEMG-LRRTTIRAFDNALLSVPNSELAGKPIRNWSRR 477

Query: 352 KTHWRIKTYLAISHLDVHKVNSI-VADMRKVLAKNPQV--------EQQRLHRRVFLENI 402
           K   RIK  + +++        + V D++++L  +P++        +    +R +F ++I
Sbjct: 478 KVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNVSDYRYMFKKDI 537

Query: 403 ------------------NPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHR 444
                                  S+NILV CF KT  +EE+L VKE ++L ++ ++  H 
Sbjct: 538 VSIDDFLGYKNNLFVFLDQFADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHH 597

Query: 445 ARMATPIRTVQKIYSE 460
              A P    Q +Y E
Sbjct: 598 LSFAFP---SQSLYVE 610

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 10/172 (5%)

Query: 255 LGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGT 314
           LG+  +  L   G+G + + LA + + +N ++ ++I   +PF I  WI T   G   SG 
Sbjct: 161 LGYDIKTLLAGLGIGGLAVALASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGI 216

Query: 315 VEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNS 373
           VE +G  S T IR  D   + +PN K    +++N+  K  W++ T + +++   V K+  
Sbjct: 217 VEDIGIRS-TKIRATDNSIIVVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRK 275

Query: 374 IVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 425
               ++ +L ++P VE + +   V+ +       SLNI V  ++K SR+  Y
Sbjct: 276 AEEIIKNILLEHPNVEDEPI--TVYFKEFG--DWSLNIQVVYYIKNSRYNGY 323

Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 19/228 (8%)

Query: 233 NFAG---KAVYTAVWVAAVSLFM-------ELLGFSTQRWLTAGGLGTVLLTLAGREIFT 282
           +F G   + V T   V++V LF        E  G + Q  LT GG+G V    A R+I  
Sbjct: 271 SFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDILG 330

Query: 283 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 342
           N LS + +  ++PF + +     I+   V G V  +G  + +++   ++  V +PN  F+
Sbjct: 331 NVLSGLSMQFSRPFSMGD----TIKAGSVEGQVIEMGLTTTSLLNA-EKFPVLVPNSLFS 385

Query: 343 VNVVRNLSQKTHWR-IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 401
             V+ N S +  WR I + + +   D+  +  I  +++++L  N +V   +     +L  
Sbjct: 386 SQVIVNKS-RAQWRAIASKIPLQIDDLDMIPQISNEIKEMLRSNTKVFLGKEAPHCYLSR 444

Query: 402 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMAT 449
           +  E     + + C +     EE    ++ +LL+ + +I  H   + T
Sbjct: 445 V--EKSFAELTIGCNLIRMGKEELYNTQQEVLLEAVKIIKKHGVSLGT 490

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 103/223 (46%), Gaps = 12/223 (5%)

Query: 234 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 293
           F  K +   +   +VS+  +   +    ++   GLG +   LA ++  +NF   ++I   
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195

Query: 294 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 353
           +PF I +W++T      V+G+VE + + S T  R      V +PN   ++  + N ++ T
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250

Query: 354 HWRIKTYLAISHLD-VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQS-LNI 411
             +I   + +S+   +  +   +  +R +L     +E + +   + + N +  + S  N+
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTML-----LEHEGVDNEIIMVNFDTFADSYYNL 305

Query: 412 LVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 454
             + + KT+ + E L ++E I   ++ ++     + A P + V
Sbjct: 306 FFNFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYPGQMV 348

May play a role in resistance to osmotic downshock.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
255545964	705	conserved hypothetical protein [Ricinus	0.935	0.720	0.745	0.0
224067078	628	predicted protein [Populus trichocarpa]	0.858	0.742	0.791	0.0
225459093	709	PREDICTED: uncharacterized protein LOC10	0.935	0.716	0.739	0.0
356515716	682	PREDICTED: uncharacterized protein LOC10	0.946	0.753	0.717	0.0
449469783	704	PREDICTED: mechanosensitive ion channel	0.944	0.728	0.712	0.0
356508025	681	PREDICTED: uncharacterized protein LOC10	0.946	0.754	0.708	0.0
302142063	514	unnamed protein product [Vitis vinifera]	0.920	0.972	0.743	0.0
116268423	705	expressed protein [Prunus persica]	0.850	0.655	0.781	0.0
357465255	716	MscS family inner membrane protein ynaI	0.941	0.713	0.682	0.0
449508955	550	PREDICTED: mechanosensitive ion channel	0.867	0.856	0.75	0.0

>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis]

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/519 (74%), Positives = 454/519 (87%), Gaps = 11/519 (2%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTT--GKGR----LVHINLSSLAMRRDAWGLNLLSH 54
           MTC+ ++QLSQEL IY   GC +   T  GKG+    L ++ LSS  +R+DAW L+ LS 
Sbjct: 1   MTCTGSIQLSQELKIYTSRGCGSQQNTVLGKGKSRLFLANVTLSSHGLRQDAWTLHFLSS 60

Query: 55  LCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAA 113
           +  P+ P  ++CNV +C+S+L + GG +IP++KSAA  VLTRSY+ L G+P++L+LIPA 
Sbjct: 61  MHQPIRPAPSRCNVLVCQSLLTSQGGTEIPLVKSAAV-VLTRSYNALSGSPLVLKLIPAI 119

Query: 114 ALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDP 173
           +++AFA+WGL PL+RLGR IFL+ +D +WK+S THY+LTSYLQPLLLWTG  L+CR LDP
Sbjct: 120 SIIAFASWGLGPLLRLGRIIFLHGSDNNWKKSSTHYVLTSYLQPLLLWTGAILVCRALDP 179

Query: 174 LVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFN 233
           +VL SE +Q VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF TE ND  S+DARNMGF+
Sbjct: 180 VVLQSEANQAVKQRLLNFVRSLSTVMAFAYCLSSLIQQAQKFFTEMND--SSDARNMGFS 237

Query: 234 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 293
           FAGKAVY+AVW+AAVSLFMELLGFSTQ+WLTAGGLGTVL+TLAGREI TNFLSSVMIHAT
Sbjct: 238 FAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHAT 297

Query: 294 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 353
           +PFV+NEWIQTKI+GYEVSGTVEHVGWWSPT+IRGDDREAVHIPNHKFTVNVVRNLSQKT
Sbjct: 298 RPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGDDREAVHIPNHKFTVNVVRNLSQKT 357

Query: 354 HWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILV 413
           HWRIKT+LAISHLDV+KVN+IVADMRKVLAKNPQVEQQRLHRRVFL+NINPE+Q+L ILV
Sbjct: 358 HWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILV 417

Query: 414 SCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIF 473
           SCFVKTS FEEYLCVKEA+LLDLL V+SHHRAR+ATPIRTVQKIY+E DL+N+PFADTIF
Sbjct: 418 SCFVKTSHFEEYLCVKEAVLLDLLRVLSHHRARLATPIRTVQKIYNEADLDNVPFADTIF 477

Query: 474 THSRAAANRPFLLIEPSYKISSDDKIKASTRA-ARNEEK 511
             SRAA NRP LLIEPSYKI+ DDK KAST++ + NEEK
Sbjct: 478 ARSRAATNRPLLLIEPSYKINGDDKTKASTQSVSTNEEK 516

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067078|ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1| predicted protein [Populus trichocarpa]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/471 (79%), Positives = 426/471 (90%), Gaps = 5/471 (1%)

Query: 43  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLR 101
           R D WGL+ L+   GP +P+ ++CNVF+CRSVL PGG  +IPVLKSAA A  TRSYD LR
Sbjct: 1   RLDPWGLHFLNSTRGPPSPVPSRCNVFLCRSVLTPGGGNEIPVLKSAALA-FTRSYDALR 59

Query: 102 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 161
           G+ ++L+LIPA  ++ FAAWGL PL+ LGRTIFL+++D SWK+S THY++TSYLQPLLLW
Sbjct: 60  GSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKSSTHYVVTSYLQPLLLW 119

Query: 162 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 221
           TG TLICR LDP+VL SE SQ VKQR+LNFVRSLSTV+AFAYCLSSLIQQ QKF+TE N+
Sbjct: 120 TGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVVAFAYCLSSLIQQAQKFITETNE 179

Query: 222 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 281
             S+DARNMGF+FAGKAVYTAVW+AAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 180 --SSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 237

Query: 282 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 341
           TNFLSS+MIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 238 TNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 297

Query: 342 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 401
           +V++VRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKNPQ+EQQRLHRRVFL+N
Sbjct: 298 SVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQIEQQRLHRRVFLDN 357

Query: 402 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 461
           INPE+Q+L ILVSCFVKTS FEEYLCVKEA+LLDLL VISHHRAR+ATPIRTVQKIYSE 
Sbjct: 358 INPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQKIYSEA 417

Query: 462 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEK 511
           DLEN+PF+D+IFT S A AN P LLIEPSYKI+S+DK+KAS R+ R NEEK
Sbjct: 418 DLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKASNRSLRANEEK 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/519 (73%), Positives = 441/519 (84%), Gaps = 11/519 (2%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSN----LYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLC 56
           M  + +MQLS+EL I N+ G SN    +    +  L+ I LSS A R+DA  L+LL+ + 
Sbjct: 1   MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMR 60

Query: 57  GPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 115
           G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LRG P++L+L+PA ++
Sbjct: 61  GSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALRGRPLVLQLVPAVSI 119

Query: 116 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
           VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW G  LICR LDP++
Sbjct: 120 VAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPII 179

Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
           LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND  S+DAR MGF FA
Sbjct: 180 LPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND--SSDARTMGFQFA 237

Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 295
           GKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
           FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW
Sbjct: 298 FVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357

Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
           RIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ I+PE+Q+L ILVSC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSC 417

Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPD--LENIPFADTIF 473
           FVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  D  +ENIPFAD IF
Sbjct: 418 FVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIF 477

Query: 474 THSRAAANRPFLLIEPSYKISSDDKIKASTRAA-RNEEK 511
           T S AAANRP LLIEPSYK++ DDK KAST +A +NEEK
Sbjct: 478 TRSSAAANRPLLLIEPSYKMNGDDKTKASTGSACQNEEK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515716|ref|XP_003526544.1| PREDICTED: uncharacterized protein LOC100777815 [Glycine max]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/523 (71%), Positives = 440/523 (84%), Gaps = 9/523 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFG-CS---NLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLC 56
           M C  + QLS ++ + +  G CS   N    G+  LV INLS   +++D+   +LLS L 
Sbjct: 1   MVCPGSTQLSHDVRLNSNIGFCSFHHNRMGVGRLHLVTINLSPSNLKQDSSAFHLLSRLH 60

Query: 57  GPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALV 116
            P+  + ++CNVFICRSVL PGG     L  +A+ +LTRSYD L+GNP+ L+LIPA  ++
Sbjct: 61  APIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVILTRSYDALQGNPIFLQLIPAIGII 120

Query: 117 AFAAWGLVPLVRLGRTIFLN-RTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
           AFA  GL PL+RL R +FL   TD SWK+S +  I+TSY+QPLLLWTG  L+CR LDPLV
Sbjct: 121 AFAVCGLEPLLRLSRVLFLQVSTDISWKKSSSQSIMTSYIQPLLLWTGAMLVCRALDPLV 180

Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
           LPSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E ND  S+ ARNMG +FA
Sbjct: 181 LPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGND--SSGARNMGLDFA 238

Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 295
           GKAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREIFTNFLSS+MIHAT+P
Sbjct: 239 GKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRP 298

Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
           F++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK+HW
Sbjct: 299 FIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHW 358

Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
           RIK+Y+AISHLDV+KVN+IVADMRKVL+KNPQVEQQ+LHRRVFLEN+NPE+Q+L IL+SC
Sbjct: 359 RIKSYIAISHLDVNKVNNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISC 418

Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 475
           FVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE D ENIPF DTIFT 
Sbjct: 419 FVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTR 478

Query: 476 SRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 517
           SR AANRPFLLIEP YK++ +DK+KASTR+ R NEEK  ++++
Sbjct: 479 SR-AANRPFLLIEPPYKVNGEDKVKASTRSTRANEEKDSKIDE 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/522 (71%), Positives = 438/522 (83%), Gaps = 9/522 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSNLYTTGKGR----LVHINLSSLAMRRDAWGLNLLSHLC 56
           M    + Q S +L I +  GC+ L+ + KG+    LV I  +SL +R +   L LL  + 
Sbjct: 1   MVHPGSTQFSHKLGIQSVHGCNKLHISVKGKARLHLVTIVPTSLGLRHNPGSLQLLRSVS 60

Query: 57  GPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 115
            P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D LR NP++L+LIPAA +
Sbjct: 61  RPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDALRSNPLLLKLIPAACV 119

Query: 116 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
           +AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLLWTG TLICR LDP+V
Sbjct: 120 IAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVV 179

Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
           LPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+ND    DARNMGF+FA
Sbjct: 180 LPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESNDPG--DARNMGFDFA 237

Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 295
           GKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
           FV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTV++VRNL+QKTHW
Sbjct: 298 FVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHW 357

Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
           RIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+N+NPE+Q+L I+VSC
Sbjct: 358 RIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSC 417

Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 475
           FVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E DLEN+PF++T+++ 
Sbjct: 418 FVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSR 477

Query: 476 SRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 517
           S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 478 S-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/522 (70%), Positives = 437/522 (83%), Gaps = 8/522 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFG-CS---NLYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLC 56
           M C  + +LS ++  Y+  G CS   N    G+  LV +NLS  ++++D+  L+LLS   
Sbjct: 1   MVCPGSTKLSHDVRFYSNTGFCSFHHNRMGVGRLHLVTLNLSPCSLKQDSSALHLLSRPH 60

Query: 57  GPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAALV 116
            P+  + ++CNVFIC+SVL PGG     L  +A+ +LTRSYD L+GNP  L+LIPA  ++
Sbjct: 61  APIRHVPSRCNVFICQSVLIPGGGSGTPLMKSASVILTRSYDALQGNPTFLQLIPAIGII 120

Query: 117 AFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVL 176
           AFA  GL PL+RL R +FL  TD SWK+S + YI+TSY QPLLLWTG  L+CR LDPLVL
Sbjct: 121 AFAVCGLEPLLRLSRVLFLQSTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVL 180

Query: 177 PSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAG 236
           PSE+SQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  E ND  S+ ARNMG +FAG
Sbjct: 181 PSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGND--SSGARNMGLDFAG 238

Query: 237 KAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPF 296
           KAVYTAVWVAAVSLFMELLGFSTQ+W+TAGGLGTVLLTLAGREIFTNFLSS+MIHAT+PF
Sbjct: 239 KAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPF 298

Query: 297 VINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR 356
           ++NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK+HWR
Sbjct: 299 IVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHWR 358

Query: 357 IKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCF 416
           IK+Y+AISHLDV+K+N+IVADMRKVL+KNPQVEQQ+LHRRVFLEN+NPE+Q+L IL+SCF
Sbjct: 359 IKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCF 418

Query: 417 VKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHS 476
           VKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSE D ENIPF DTIFT S
Sbjct: 419 VKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRS 478

Query: 477 RAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQ 517
            +A NRPFLLIEP YK++ +DK K STR+ R +EEK  R+++
Sbjct: 479 -SAGNRPFLLIEPLYKVNGEDKTKPSTRSTRASEEKDFRIDE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142063|emb|CBI19266.3| unnamed protein product [Vitis vinifera]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/510 (74%), Positives = 434/510 (85%), Gaps = 10/510 (1%)

Query: 1   MTCSSTMQLSQELNIYNKFGCSN----LYTTGKGRLVHINLSSLAMRRDAWGLNLLSHLC 56
           M  + +MQLS+EL I N+ G SN    +    +  L+ I LSS A R+DA  L+LL+ + 
Sbjct: 1   MALAGSMQLSRELGIQNRHGYSNQPKIMMAKDRLHLLSITLSSHASRQDALSLHLLNSMR 60

Query: 57  GPLNPISTKCNVFICRSVLAPGGI-DIPVLKSAAAAVLTRSYDTLRGNPVILRLIPAAAL 115
           G + P+S++C  F+CRS LAPGG  +I VLKSAA  VLTRS + LRG P++L+L+PA ++
Sbjct: 61  GSITPVSSRCEFFLCRSFLAPGGGNEISVLKSAAL-VLTRSCNALRGRPLVLQLVPAVSI 119

Query: 116 VAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
           VAFAAWGL PL+RL R +FLN+TD SWK+S T+Y+LT YLQPLLLW G  LICR LDP++
Sbjct: 120 VAFAAWGLGPLMRLSRNLFLNKTDSSWKKSSTYYVLTYYLQPLLLWIGAMLICRALDPII 179

Query: 176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
           LPS+ SQ VKQR+L F+RSLSTVLA AYCLSSLIQQ+Q F  E ND  S+DAR MGF FA
Sbjct: 180 LPSKESQAVKQRLLIFIRSLSTVLASAYCLSSLIQQVQNFFMENND--SSDARTMGFQFA 237

Query: 236 GKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQP 295
           GKAVYTA+WVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT+P
Sbjct: 238 GKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRP 297

Query: 296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
           FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW
Sbjct: 298 FVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 357

Query: 356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
           RIKT+LAISHLDV+K+N+IVADMRKVLAKNPQVEQQRLHRRVFL+ I+PE+Q+L ILVSC
Sbjct: 358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSC 417

Query: 416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPD--LENIPFADTIF 473
           FVKT RFEEYLCVKEAILLDLL VISHH+AR+ATPIRTVQK YS  D  +ENIPFAD IF
Sbjct: 418 FVKTPRFEEYLCVKEAILLDLLRVISHHQARLATPIRTVQKEYSMADMEMENIPFADPIF 477

Query: 474 THSRAAANRPFLLIEPSYKISSDDKIKAST 503
           T S AAANRP LLIEPSYK++ DDK KAST
Sbjct: 478 TRSSAAANRPLLLIEPSYKMNGDDKTKAST 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116268423|gb|ABJ96380.1| expressed protein [Prunus persica]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/480 (78%), Positives = 423/480 (88%), Gaps = 18/480 (3%)

Query: 43  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVLAPGGID-IPVLKSAAAAVLTRSYDTLR 101
           R+ A  LNLLS + GP+ P+S++CNVF+CRSVL PGG + +P+LKSAA  VLTRSYD LR
Sbjct: 27  RQGACSLNLLSSVRGPIGPVSSRCNVFLCRSVLVPGGGNGVPLLKSAAV-VLTRSYDALR 85

Query: 102 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 161
           G+PV+L+LIPA A++AFA WGL PL+RLGR IFL R D +W +SR+HY++ SYL+PLLLW
Sbjct: 86  GSPVLLKLIPAVAIIAFAVWGLGPLLRLGRIIFLQRNDSTWNKSRSHYVMNSYLRPLLLW 145

Query: 162 TGVTLIC-------------RELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSL 208
           TG TL+C             R LDP+VLPSE SQ VKQR++NFV+SLSTVLAFAYCLSSL
Sbjct: 146 TGATLMCSHFICANCCKVYFRALDPVVLPSEASQAVKQRLINFVQSLSTVLAFAYCLSSL 205

Query: 209 IQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL 268
            QQ QKF TE   +D +D+RNMGFNFAGKAVY+AVWVAAVSLFMELLGFSTQ+WLTAGGL
Sbjct: 206 NQQAQKFFTET--SDPSDSRNMGFNFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGL 263

Query: 269 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRG 328
           GTVLLTLAGREIFTNFLSSVMIHAT+PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG
Sbjct: 264 GTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRG 323

Query: 329 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQV 388
           DDREAVHIPNHKFTVNVVRNLSQKTHWRIKT+LAISHLDV K+N+IVADMRKVLAKN QV
Sbjct: 324 DDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVIKINTIVADMRKVLAKNSQV 383

Query: 389 EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK-EAILLDLLHVISHHRARM 447
           EQQRLHRRVFL+NINP++Q+L ILVSCFVKTS FEEYLCVK EAILLDLL V+SHHRAR+
Sbjct: 384 EQQRLHRRVFLDNINPDNQALMILVSCFVKTSHFEEYLCVKEEAILLDLLRVVSHHRARL 443

Query: 448 ATPIRTVQKIYSEPDLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAAR 507
           ATPIRTVQK YSE DLEN+PFADTIFTHSRA+ NRP+LLIEPSYKISSDDK KAS+R  R
Sbjct: 444 ATPIRTVQKYYSEADLENVPFADTIFTHSRASNNRPYLLIEPSYKISSDDKSKASSRPTR 503

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465255|ref|XP_003602909.1| MscS family inner membrane protein ynaI [Medicago truncatula] gi|355491957|gb|AES73160.1| MscS family inner membrane protein ynaI [Medicago truncatula]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/526 (68%), Positives = 431/526 (81%), Gaps = 15/526 (2%)

Query: 1   MTCSSTMQLSQEL------NIYNKFGCSNLYTTGKGRLVHINLSSLAMRRDAWGLNLLSH 54
           M    +MQ S+++      N    F   N    G+  LV  NL    +++D+   +LL  
Sbjct: 12  MAYPGSMQFSRDVRLKTSNNGPRSFQHHNPARVGRLHLVTTNLLPRTLKQDSLSHHLLRI 71

Query: 55  LCGPLNPISTKCNVFICRSVLAPGGIDI-PVLKSAAAAVLTRSYDTLRGNPVILRLIPAA 113
              P     ++C+VF+CRS + PGG      L  +A+ +LTRSYD+L G+P++LRLIPA 
Sbjct: 72  RHAP-----SRCSVFVCRSAILPGGGGSGTALIKSASVLLTRSYDSLLGSPILLRLIPAL 126

Query: 114 ALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDP 173
            ++AFA +G+ PL+RL R +F  RTD SWK+S + Y++TSY QPLLLWTG  LICR LDP
Sbjct: 127 GIIAFAVYGIEPLLRLSRILFFQRTDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDP 186

Query: 174 LVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFN 233
           ++LPS+TSQ VKQR+LNFVRSLSTV++FAYCLSSLIQQ QKF  +AN+  S+DARNMG +
Sbjct: 187 IILPSQTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLDANE--SSDARNMGLD 244

Query: 234 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT 293
           FAGKA+YTAVWVAAVSLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIFTNFLSS+MIH T
Sbjct: 245 FAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHTT 304

Query: 294 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT 353
           +PFV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNL+QK+
Sbjct: 305 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKS 364

Query: 354 HWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILV 413
           HWRIK+Y++ISHLDV+K+N+IVADMRKVLAKNPQVEQQ+LHRRVFLE+INPE+ +L IL+
Sbjct: 365 HWRIKSYISISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLEDINPENTALKILI 424

Query: 414 SCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIF 473
           SCFVKTS FEEYLCVKEAILLDLL V+SHHRAR+ATPIRTVQKIYSEP  ENIPF D+IF
Sbjct: 425 SCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPASENIPFGDSIF 484

Query: 474 THSRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQP 518
           T SRAA NRPFLLIEP YK++ +DK K STR+ R NEEK  ++++P
Sbjct: 485 TRSRAAVNRPFLLIEPPYKVNGEDKAKPSTRSTRGNEEKDAKVDEP 530

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449508955|ref|XP_004163453.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/476 (75%), Positives = 414/476 (86%), Gaps = 5/476 (1%)

Query: 43  RRDAWGLNLLSHLCGPLNPISTKCNVFICRSVL-APGGIDIPVLKSAAAAVLTRSYDTLR 101
           R +   L LL  +  P+ P+S++ NVF+CRSVL + GG    VLKSAA  VLTRS D LR
Sbjct: 22  RHNPGSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLKSAAV-VLTRSCDALR 80

Query: 102 GNPVILRLIPAAALVAFAAWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLW 161
            NP++L+LIPAA ++AFAAWG+ PL+RLGR +FL+  DGSWK+S T+Y+ TSY+QPLLLW
Sbjct: 81  SNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLW 140

Query: 162 TGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEAND 221
           TG TLICR LDP+VLPS  SQ VKQR+LNFVRSLSTVLAFAYCLSSLIQQ+QKF  E+ND
Sbjct: 141 TGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCLSSLIQQVQKFAYESND 200

Query: 222 ADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIF 281
               DARNMGF+FAGKAVYTAVW+AA+SLFMELLGFSTQ+WLTAGGLGTVLLTLAGREIF
Sbjct: 201 PG--DARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIF 258

Query: 282 TNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 341
           TNFLSSVMIHAT+PFV+NEWIQTKI GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF
Sbjct: 259 TNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKF 318

Query: 342 TVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLEN 401
           TV++VRNL+QKTHWRIKT+LAISHLDV+K+N IVADMRKVL+KNPQVEQQRLHRR+FL+N
Sbjct: 319 TVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDN 378

Query: 402 INPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEP 461
           +NPE+Q+L I+VSCFVKTSRFEEYLCVKEAILLDLL VISHHRAR+ATPIRTVQKIY E 
Sbjct: 379 VNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEA 438

Query: 462 DLENIPFADTIFTHSRAAANRPFLLIEPSYKISSDDKIKASTRAARNEEKIRRLNQ 517
           DLEN+PF++T+++ S  A NRP LLIEPSYK++ DDK K S+R  R+  + +   Q
Sbjct: 439 DLENVPFSETMYSRS-GATNRPLLLIEPSYKVNGDDKTKVSSRPTRSSTEEKEAKQ 493

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
TAIR|locus:2015297	678	MSL3 "MSCS-like 3" [Arabidopsi	0.902	0.722	0.620	3e-165
TAIR|locus:2142414	673	MSL2 "MSCS-like 2" [Arabidopsi	0.948	0.765	0.587	1.4e-158
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.467	0.740	0.279	2.9e-22
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.388	0.550	0.242	8.9e-16
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.388	0.550	0.242	8.9e-16
TIGR_CMR|CJE_0289	627	CJE_0289 "mechanosensitive ion	0.344	0.298	0.223	0.00048

TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
 Identities = 311/501 (62%), Positives = 383/501 (76%)

Query:     7 MQLSQELNIYNKFGCSNLYTT--GKGR--LVHINLSSLAMRRDAWGLNLLSHLCGPLNPI 62
             + LS +LN++     S  + +  GK R  L    LSS A R+D W L LL  L G + P+
Sbjct:     8 LPLSHDLNVHKIHEASGFHNSAAGKNRVYLTRTGLSSCATRQDVWSLQLLESLSGSIVPV 67

Query:    63 STKCNVFICRSVLAPG-GIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPXXXXXXXXXW 121
             S++CN F+CRS L+PG G + P+LKS A  + TR YD L GNP +++LIP         W
Sbjct:    68 SSRCNAFVCRSALSPGNGNEGPILKSTAV-IFTRVYDALGGNPHLVKLIPAVGILAFATW 126

Query:   122 GLVPLVRLGRT-IFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSET 180
             GL PL+RL RT +F    D + ++S T YI+ SYLQPLLLW+G  L+CR LDP+VLPS  
Sbjct:   127 GLRPLLRLARTTLFEKGNDANSQKSSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSA 186

Query:   181 SQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVY 240
              Q +KQR+L F RS+STVLAF+ CLSSL+QQ+QKF  E N+    D RNMGF+FAGKAVY
Sbjct:   187 GQAIKQRLLIFARSISTVLAFSCCLSSLLQQVQKFFMETNNP--ADTRNMGFSFAGKAVY 244

Query:   241 TAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINE 300
             TA WVAA SLFMELLGFSTQ+W               REI TNFLSS+MIHAT+PFV+NE
Sbjct:   245 TAAWVAAASLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNE 304

Query:   301 WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTY 360
             WIQTKI GYEVSGTVE VGWWSPTIIRGDDREAVHIPNH+F+VN+VRNL+QKTHWRIKT+
Sbjct:   305 WIQTKIGGYEVSGTVEQVGWWSPTIIRGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTH 364

Query:   361 LAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS 420
             LAISHLDV K+N+IVADMRKVL+KNPQ+EQQ++HRRVFLE+I+PE+Q+L IL+SCFVKTS
Sbjct:   365 LAISHLDVSKINNIVADMRKVLSKNPQIEQQKIHRRVFLEDIDPENQALRILISCFVKTS 424

Query:   421 RFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTHSRAAA 480
             RFEEYLCVKEA+LLDLL VI HH AR+ATPIRTVQ++ +E +++   F+D +F  ++AA 
Sbjct:   425 RFEEYLCVKEAVLLDLLTVIRHHGARLATPIRTVQRMRNEAEVDTAGFSDIVF--NQAAM 482

Query:   481 NRPFLLIEPSYKISSDDKIKA 501
             NR ++LIEPSYKI+SDD  K+
Sbjct:   483 NRRYMLIEPSYKINSDDNSKS 503

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0010020 "chloroplast fission" evidence=IGI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
 Identities = 309/526 (58%), Positives = 383/526 (72%)

Query:     1 MTCSSTMQLSQELNIYNKFGCSNLYTTGKGRLVHINLS--SLAMRRDAWGLN--LLS-HL 55
             M    T+QLS  L +       N   +   R +HI+    SL +     G +  LLS +L
Sbjct:     1 MALYGTLQLSHSLGLCRNQRFCNPENSAMRRRLHISNGPLSLGVPLGQHGFSNILLSNYL 60

Query:    56 CGPLNPISTKCNVFICRSVLAPGGIDIPVLKSAAAAVLTRSYDTLRGNPVILRLIPXXXX 115
               P+  +  +   F C S  A G    P +K A   VLT+S+  ++  P + +L+P    
Sbjct:    61 RRPICSVPCRTTAFRCHSFSASGKAIEPAVK-AVTVVLTKSHGLMQQFPFVYKLVPAVAL 119

Query:   116 XXXXXWGLVPLVRLGRTIFLNRTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLV 175
                  WGLVP  R GR I LN+ D  WK+S T++++TSY+QPLLLW G   ICR LDP+V
Sbjct:   120 LVFSLWGLVPFARQGRNILLNKNDNGWKKSGTYHVMTSYVQPLLLWLGALFICRALDPVV 179

Query:   176 LPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFA 235
             LP+E S+ VK R+LNFVRSLSTVLAFAYCLSSLIQQ QK  +E ++   +D RNMGF FA
Sbjct:   180 LPTEASKIVKDRLLNFVRSLSTVLAFAYCLSSLIQQTQKLFSETSNP--SDTRNMGFQFA 237

Query:   236 GKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
             GKA+Y+AVWVAAVSLFMELLGFSTQ+W               REI TNFLSSVMIHAT+P
Sbjct:   238 GKALYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRP 297

Query:   296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
             FV+NEWIQTKI+GYEVSGTVEHVGWWSPTIIRG+DREA+HIPNHKFTVNVVRNL+QKTHW
Sbjct:   298 FVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLTQKTHW 357

Query:   356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
             RIKT+LAISHLDV+K+N+IVADMRKVLAKNP VEQQRLHRRVFLEN+ PE+Q+L+IL+SC
Sbjct:   358 RIKTHLAISHLDVNKINNIVADMRKVLAKNPMVEQQRLHRRVFLENVIPENQALSILISC 417

Query:   416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYSEPDLENIPFADTIFTH 475
             FVKTS  EEYL VKEAILLDLL VISHHRAR+ATPIRT++K+Y+E D+EN PF ++++  
Sbjct:   418 FVKTSHHEEYLGVKEAILLDLLRVISHHRARLATPIRTIRKMYTETDVENTPFGESMY-- 475

Query:   476 SRAAANRPFLLIEPSYKISSDDKIKASTRAAR-NEEKIRRLNQPQN 520
                 + RP +LIEP+YKI+ +DK K+  RAA+   E+  + + P++
Sbjct:   476 GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAKPTAEQENKGSNPKS 521

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IGI

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 265 (98.3 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 75/268 (27%), Positives = 128/268 (47%)

Query:   188 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAA 247
             V++F+ +    +     L  LI Q +K   +    D T AR M      + +   + V  
Sbjct:    77 VIDFICTSLIAVILTIKLFLLINQFEKQQIKKG-RDITSARIMS-----RIIKITIIVVL 130

Query:   248 VSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQPFVINEWIQTKIQ 307
             V L+ E  G S                   ++I +NF S +M++  +PF I +WI++  +
Sbjct:   131 VLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRSPDR 190

Query:   308 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLD 367
               E  GTV  +GW    I   D+R  +++PN  F+   V N  + T+ RI T + + + D
Sbjct:   191 NIE--GTVAEIGWRITKITTFDNRP-LYVPNSLFSSISVENPGRMTNRRITTTIGLRYED 247

Query:   368 VHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINP-ESQSLNILVSCFVKTSRFEEYL 426
               KV  IV  +R++L  +P ++Q    R+  L   N     SLNI+V CF KT+ + E+L
Sbjct:   248 AAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWAEWL 303

Query:   427 CVKEAILLDLLHVISHHRARMATPIRTV 454
               ++ + L ++ ++  H A  A P +T+
Sbjct:   304 AAQQDVYLKIIDIVQSHGADFAFPSQTL 331

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 8.9e-16, P = 8.9e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   238 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 454
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 223 (83.6 bits), Expect = 8.9e-16, P = 8.9e-16
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query:   238 AVYTAVWVAAVSLFMEL--LGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHATQP 295
             A  T V + A  L M L  +G                     ++   NF   +MI+  +P
Sbjct:   136 AQLTRVVIIAFVLLMLLQTIGIKISALLAFGGVGVAVIGFAAKDTLGNFFGGMMIYWDRP 195

Query:   296 FVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHW 355
             F + +WI++  +  ++ GTVE++GW   T IR  D+ ++++PN   +   V N S+ T+ 
Sbjct:   196 FSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVPNGILSNVAVENPSRMTNR 252

Query:   356 RIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSC 415
             R+K  + + + D  K+  +   + ++L  +P+++   + + +F+        SLN++V  
Sbjct:   253 RLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTLFVNLFEFAPSSLNMMVYT 309

Query:   416 FVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTV 454
             F KT+ + ++  +++ I+L ++++I+ + A  A P +T+
Sbjct:   310 FTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TIGR_CMR|CJE_0289 CJE_0289 "mechanosensitive ion channel family protein" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 115 (45.5 bits), Expect = 0.00048, Sum P(2) = 0.00047
 Identities = 45/201 (22%), Positives = 81/201 (40%)

Query:   233 NFAGKAVYTAVWVAAVSLFMELLGFSTQRWXXXXXXXXXXXXXXXREIFTNFLSSVMIHA 292
             N   K +Y  + + A+   +  LGF+                   ++I  NF +S+++  
Sbjct:   368 NLIIKILYFVIIIIALLYILAQLGFNISAIIASLGIGGLAVALAAKDIIANFFASILLLF 427

Query:   293 TQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQK 352
                F   +W++  + G E  GTV   G    T IR  D   V +PN       ++N S++
Sbjct:   428 DNSFNQGDWVE--VSGIE--GTVVETGL-RKTTIRTFDNCLVFLPNSTIMGANIKNWSKR 482

Query:   353 THWR-IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQV---EQQRL----HRRVFLENIN 403
                R ++ YL + +     K+   V D+R+ L  +  V   E   L    H   + +N+ 
Sbjct:   483 RMGRHVRMYLGVGYDATPEKLEQCVKDLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLV 542

Query:   404 PESQSLNILVSCFVKTSRFEE 424
               +       +C+V  S F +
Sbjct:   543 SINDLEGYKNACYVALSEFAD 563

GO:0005216 "ion channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W1	MSL3_ARATH	No assigned EC number	0.6546	0.9023	0.7227	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1196.1 hypothetical protein (589 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	543
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	1e-22
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	9e-17

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 95.7 bits (239), Expect = 1e-22
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 10/197 (5%)

Query: 239 VYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVI 298
           +   + V  + + +  LG +    L   G   + L  A +++ +N +S ++I   +PF I
Sbjct: 2   LKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKI 61

Query: 299 NEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIK 358
            +WI+      +V GTVE +G  S T IR  D   V IPN K   + + NLS+    R++
Sbjct: 62  GDWIEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVE 116

Query: 359 TYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFV 417
             + +++  D  K+  ++  +++   ++P V  +     V          SLN  V  +V
Sbjct: 117 VSIGVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEFGDS--SLNFEVRVWV 173

Query: 418 KTSRFEEYLCVKEAILL 434
           KT    EY  V+  + L
Sbjct: 174 KT-LPGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 81.1 bits (200), Expect = 9e-17
 Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 14/269 (5%)

Query: 188 VLNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGF-NFAGKAVYTAVWVA 246
           +   +  L  +L     ++ L++ + + L          AR      F    +   + V 
Sbjct: 39  LRKLLLLLLILLIAFLLIAYLVKLLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVV 98

Query: 247 AVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKI 306
           A+ + + +LG      L   G   + + LA +++ +N ++ + +   +PF + +WI+   
Sbjct: 99  ALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI-- 156

Query: 307 QGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAIS-H 365
            G  V GTVE +G  S T IR  D   V IPN K     V N S++   R++  + ++  
Sbjct: 157 -GSGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYD 214

Query: 366 LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEY 425
            D+ K   I   +++VL + P+V +      + +  +      +NI V  +      E+ 
Sbjct: 215 SDLEKALKI---LKEVLEELPEVLKIEPEPVIGVSELG--DSGINIRVRFWTNP---EDL 266

Query: 426 LCVKEAILLDLLHVISHHRARMATPIRTV 454
             V+  + L +   +      +  P ++V
Sbjct: 267 WSVQRELNLRIKEALEEAGIEIPYPQQSV 295

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	543
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.82

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=3.6e-45  Score=372.43  Aligned_cols=250  Identities=18%  Similarity=0.259  Sum_probs=224.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 009110          189 LNFVRSLSTVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  268 (543)
Q Consensus       189 ~~~i~~l~~il~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi  268 (543)
                      ++++.++ ++++++|++.++++...+....+.+.     +.+..+++.+++++++++++++++|..+|++.++++|++|+
T Consensus        29 ~~i~~al-~il~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~  102 (286)
T PRK10334         29 VNIVAAL-AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3444444 45577889999888776655444331     22346788999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEE
Q 009110          269 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  348 (543)
Q Consensus       269 ~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N  348 (543)
                      +|+++|||+|++++|++||++|+++|||++||||++    +|.+|+|++|++|+ |++|++||+.++|||+.+.++.|+|
T Consensus       103 ~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N  177 (286)
T PRK10334        103 AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIIN  177 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEE
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             ccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHH
Q 009110          349 LSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLC  427 (543)
Q Consensus       349 ~sr~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~  427 (543)
                      ||+.+.+|+++.++++| +|+++++++   ++++++++|.+.++|. |.+.+.+++  |+++++++++|+++.   ++++
T Consensus       178 ~s~~~~rr~~~~v~V~y~~d~~~~~~i---l~~~~~~~~~vl~~p~-p~v~~~~~~--dssi~~~v~~wv~~~---~~~~  248 (286)
T PRK10334        178 FSREPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQN  248 (286)
T ss_pred             cCCCCeEEEEEEEEecCCCCHHHHHHH---HHHHHHhCCceecCCC-CEEEEEeee--CceEEEEEEEEEecc---hhHH
Confidence            99988899999999999 799999998   8899999999988764 799999999  899999999999985   4678


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCCceEEEEec
Q 009110          428 VKEAILLDLLHVISHHRARMATPIRTVQKIY  458 (543)
Q Consensus       428 ir~~i~~~i~~~l~~~gI~ia~P~~~v~~~~  458 (543)
                      ++++++++++++|+++||++|||+++++...
T Consensus       249 ~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~  279 (286)
T PRK10334        249 VYWDVLERIKREFDAAGISFPYPQMDVNFKR  279 (286)
T ss_pred             HHHHHHHHHHHHHHHCCCcCCCCCeEEEecc
Confidence            9999999999999999999999999998865

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=2.2e-42  Score=384.22  Aligned_cols=298  Identities=13%  Similarity=0.152  Sum_probs=230.0

Q ss_pred             cccccccccchHHHHHHhHHHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 009110          137 RTDGSWKRSRTHYILTSYLQPLLLWTGVTLICRELDPLVLPSETSQGVKQRVLNFVRSLSTVLAFAYCLSSLIQQ-IQKF  215 (543)
Q Consensus       137 r~~~~~~~s~~~~il~~~~~Pl~l~l~~i~i~~al~~~~l~~~~~~~v~~~l~~~i~~l~~il~~~~~l~~~i~~-~~~~  215 (543)
                      |+.+.|++    .+++.++ |+.+++.+++++.++..+.++..........+...+..++++++++++.+.+.+. +.++
T Consensus       417 ~r~~~~~~----~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~  491 (741)
T PRK11465        417 KRLNGWLS----AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENR  491 (741)
T ss_pred             HHHhhhhH----HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566764    5666666 9888887777777776544432110001112222222333333333333333332 2333


Q ss_pred             HHhhc--cCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhchhhhhhhhhheeeeec
Q 009110          216 LTEAN--DADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHAT  293 (543)
Q Consensus       216 ~~~~~--~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~  293 (543)
                      +.++.  +..++....+..+++++++++++++++++++|+.+|+++++++|++|++|+++|||+|++++|++||++|+++
T Consensus       492 l~~~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e  571 (741)
T PRK11465        492 LASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFE  571 (741)
T ss_pred             HhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            32221  1112234457889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCCceEEEEEEEecc-CCHHHHH
Q 009110          294 QPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVN  372 (543)
Q Consensus       294 rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~v~y-td~e~v~  372 (543)
                      |||++||||++    +|++|+||+|++|+ |++|++||+.++|||+++.+  ++||||. ..+..++++|+| +|+|+++
T Consensus       572 ~pf~vGD~I~v----~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~  643 (741)
T PRK11465        572 NGMNTGDLVTI----GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKAN  643 (741)
T ss_pred             CCcCCCCEEEE----CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHH
Confidence            99999999999    78999999999999 99999999999999999974  9999986 557788999999 8999999


Q ss_pred             HHHHHHHHHHHcCCCc----cccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccC
Q 009110          373 SIVADMRKVLAKNPQV----EQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMA  448 (543)
Q Consensus       373 ~l~~~l~e~l~~~p~i----~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia  448 (543)
                      ++++++.+.+.++|++    .+++  +.+.+.+++  |+++++++++|+++   .++|++++++++++++.|+++||++|
T Consensus       644 ~iL~ev~~el~~dpe~~~~il~~p--~~vgV~~lg--dSsi~lrvr~~t~p---~~qw~v~rel~~~IK~~Fde~GIeIP  716 (741)
T PRK11465        644 QALKDAVAELMENEEIRGLIIGEP--NFAGIVGLT--NTAFTLRVSFTTLP---LKQWTVRFALDSQVKKHFDLAGVRAP  716 (741)
T ss_pred             HHHHHHHHHhhcCccccccccCCC--CeEEEEEec--CceEEEEEEEEECc---chHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            9988877777777764    3333  357889998  88999999999976   56899999999999999999999987


Q ss_pred             CCceEE
Q 009110          449 TPIRTV  454 (543)
Q Consensus       449 ~P~~~v  454 (543)
                      +|+..+
T Consensus       717 ~~tv~v  722 (741)
T PRK11465        717 VQTYQV  722 (741)
T ss_pred             CCceEe
Confidence            666554

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-40  Score=382.19  Aligned_cols=253  Identities=19%  Similarity=0.208  Sum_probs=223.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Q 009110          188 VLNFVRSLSTVLAFAYCLSSLIQQIQKFL-TEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAG  266 (543)
Q Consensus       188 l~~~i~~l~~il~~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~  266 (543)
                      +.+++.++ ++++++|++.+.+..+.+.+ .++.+.++     .....+.+++++++++++++++++.+|++.+++.+.+
T Consensus       836 l~~Ll~al-lIl~i~~~l~r~l~~ll~~~~~~rl~l~~-----~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~  909 (1113)
T PRK11281        836 LGNLLFAL-IILVVTYVLVRNLPGLLEVLVLSRLNLRQ-----GTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLV  909 (1113)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            34445444 45577888888888765433 33322111     1246678999999999999999999999999999999


Q ss_pred             HHHHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeE
Q 009110          267 GLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVV  346 (543)
Q Consensus       267 Gi~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I  346 (543)
                      |++|+++|||+|++++||+||++|+++|||+|||+|++    +|.+|+|++|++|+ |+++++||+.++|||+.+.++.|
T Consensus       910 gaLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~I  984 (1113)
T PRK11281        910 AALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERL  984 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCce
Confidence            99999999999999999999999999999999999999    78999999999999 99999999999999999999999


Q ss_pred             EEccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhh
Q 009110          347 RNLSQKTH-WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEE  424 (543)
Q Consensus       347 ~N~sr~~~-~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~  424 (543)
                      +|||.++. +|+.++++|+| +|+++++++   +.++++++|.+.++|. |.|++.++|  |+++++++++|+++.  .+
T Consensus       985 iN~S~~~~~~Rv~i~vgV~Y~sDi~~v~~i---L~eaa~~~p~Vl~~P~-P~V~~~~fg--dssi~~~lr~wv~~~--~~ 1056 (1113)
T PRK11281        985 INWSLSDTVTRVVIKVGVAYGSDLEKVREL---LLQAATENPRVMKEPE-PQVFFLNFG--ASTLDHELRLYVREL--GD 1056 (1113)
T ss_pred             EeCCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHcCcccccCCC-CEEEEEecc--CceEEEEEEEEEcCH--hh
Confidence            99999874 78999999999 899999998   8899999999998875 799999999  899999999999864  57


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009110          425 YLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  459 (543)
Q Consensus       425 ~~~ir~~i~~~i~~~l~~~gI~ia~P~~~v~~~~~  459 (543)
                      ++.++++++.+|++.|+++||++|||++++++...
T Consensus      1057 ~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~ 1091 (1113)
T PRK11281       1057 RSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQ 1091 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCC
Confidence            89999999999999999999999999999998764

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=374.97  Aligned_cols=251  Identities=16%  Similarity=0.149  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 009110          190 NFVRSLSTVLAFAYCLSSLIQQIQK-FLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGL  268 (543)
Q Consensus       190 ~~i~~l~~il~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi  268 (543)
                      +++.++ ++++++|++.+.+..+.+ .+.++.+.++     ....++.+++++++++++++++++.+|++.+++.+.+|+
T Consensus       835 ~ll~Al-lIliv~~~l~r~l~~lle~~l~~~~~l~~-----~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga  908 (1109)
T PRK10929        835 SVLIAI-LVFIITTQLVRNLPALLELALLQHLDLTP-----GTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA  908 (1109)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            344444 455677777777777654 3434433222     235778999999999999999999999999999999999


Q ss_pred             HHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEE
Q 009110          269 GTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRN  348 (543)
Q Consensus       269 ~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N  348 (543)
                      +|+++|||+|++++||+||++|+++|||++||+|++    +|.+|+|++|++|+ |+++++||+.++|||+.+.++.|+|
T Consensus       909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN  983 (1109)
T PRK10929        909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN  983 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             ccCCCc-eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHH
Q 009110          349 LSQKTH-WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYL  426 (543)
Q Consensus       349 ~sr~~~-~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~  426 (543)
                      ||+++. +|+.+.++|+| +|+++++++   +.++++++|.+.++|. |.|++.+++  ++++++++++|++..  .+++
T Consensus       984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~i---L~eaa~~~~~VL~~P~-P~V~~~~fg--dssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929        984 WSLSDSVTRVVLTIPAPADANSEEVTEI---LLTAARRCSLVLDNPA-PEVFLVDLQ--QGIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred             cCCCCcceEEEEEEEeCCCCCHHHHHHH---HHHHHHhCccccCCCC-CEEEEEecC--CCceEEEEEEEEcCh--hhHH
Confidence            999875 79999999999 899999999   8899999999988775 799999998  789999999999753  5789


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009110          427 CVKEAILLDLLHVISHHRARMATPIRTVQKIYS  459 (543)
Q Consensus       427 ~ir~~i~~~i~~~l~~~gI~ia~P~~~v~~~~~  459 (543)
                      .++++++.+|++.|+++||++|||++++|+...
T Consensus      1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~ 1088 (1109)
T PRK10929       1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLESL 1088 (1109)
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecC
Confidence            999999999999999999999999999998864

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.2e-36  Score=332.19  Aligned_cols=244  Identities=20%  Similarity=0.221  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q 009110          197 TVLAFAYCLSSLIQQIQ-KFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTL  275 (543)
Q Consensus       197 ~il~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgf  275 (543)
                      +++++++++.+.+.... ..+..+.+.+.+.     -..+.+++.+.+..+++++.++..|+|.+++-..+|+.|+++||
T Consensus       566 l~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~-----r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGF  640 (835)
T COG3264         566 LLFLITYVLTRNLPGWLEVRVLQRLDLDAGT-----RYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGF  640 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcch-----HHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhch
Confidence            44566777777777764 4677776644433     35688899999999999999999999999999999999999999


Q ss_pred             hchhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCC-c
Q 009110          276 AGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKT-H  354 (543)
Q Consensus       276 Aaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~-~  354 (543)
                      +.|++++||+||++|+++|||||||||++    |+.+|+|.+|+.|+ |.|+++||+-++|||+.|.++.|.|||.++ .
T Consensus       641 GLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~  715 (835)
T COG3264         641 GLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINWSLRDTT  715 (835)
T ss_pred             hHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeeeeccCce
Confidence            99999999999999999999999999999    88999999999999 999999999999999999999999999987 6


Q ss_pred             eEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHH
Q 009110          355 WRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAIL  433 (543)
Q Consensus       355 ~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~  433 (543)
                      .|+++.++++| +|+++++++   +-|+.++||.+.++|. |.|++.+|+  ++++++++++|+.....  ...++++++
T Consensus       716 ~R~~i~v~vay~sD~~~V~~~---Ll~~A~~~p~Vl~~P~-P~v~f~~fg--~s~L~fELr~~v~~~~~--~~~~~~~l~  787 (835)
T COG3264         716 TRLVIPVGVAYGSDPELVREL---LLEAAREHPRVLKDPA-PEVFFTAFG--ASSLDFELRVYVAELGD--RMPVRSELN  787 (835)
T ss_pred             EEEEEEecccCCCCHHHHHHH---HHHHHHhCCCccCCCC-CeeEeeccc--ccceeEEEEEEeecccc--ccchHHHHH
Confidence            89999999999 899999999   9999999999999986 799999999  89999999999998753  445999999


Q ss_pred             HHHHHHHHHCCCccCCCceEEEEec
Q 009110          434 LDLLHVISHHRARMATPIRTVQKIY  458 (543)
Q Consensus       434 ~~i~~~l~~~gI~ia~P~~~v~~~~  458 (543)
                      ..|.+.|+||||++|||++++++..
T Consensus       788 ~~I~~~fre~gI~ipfpq~~v~l~~  812 (835)
T COG3264         788 RAILDRFRENGIEIPFPQREVRLKN  812 (835)
T ss_pred             HHHHHHHHHcCCCCCCchHheEecC
Confidence            9999999999999999999999987

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=1.3e-36  Score=295.43  Aligned_cols=203  Identities=24%  Similarity=0.419  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEE
Q 009110          237 KAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVE  316 (543)
Q Consensus       237 ~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~Ve  316 (543)
                      +++.+++++++++.++..+|.+.+++++++|++|+++|||+|++++|++||++|++++||++||||++    ++..|+|+
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~   77 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE   77 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999    78999999


Q ss_pred             EEcceeEEEEEeCCCcEEEEeCcccccCeEEEccC-CCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 009110          317 HVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQ-KTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLH  394 (543)
Q Consensus       317 eIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr-~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~  394 (543)
                      +|+|++ |++|++||+.++|||+++.+++|.|+|+ ++.++..+.+.++| +|.++++++.+++.+.++++|.+...+ .
T Consensus        78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~  155 (206)
T PF00924_consen   78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E  155 (206)
T ss_dssp             EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred             hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence            999999 9999999999999999999999999999 77899999999999 798999999999999999999887754 3


Q ss_pred             cEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 009110          395 RRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARM  447 (543)
Q Consensus       395 p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~i  447 (543)
                      |.+.+..++  ++++.++++|+++..++.+++++|++++.++++.+++|||+|
T Consensus       156 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~  206 (206)
T PF00924_consen  156 PRVVVDEIG--DSSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI  206 (206)
T ss_dssp             EEEEEEEE---SSSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CeEEEcccc--CCceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            688899988  789999999999997888999999999999999999999985

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.2e-34  Score=294.12  Aligned_cols=208  Identities=23%  Similarity=0.392  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeecCc-ceE
Q 009110          234 FAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGY-EVS  312 (543)
Q Consensus       234 ~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~-~~~  312 (543)
                      ++.++.++++++++++.++..+|++.+++++++|++|+++|||+|++++|+++|+++++++||++||||++    + +.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~~~~~  161 (316)
T COG0668          86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----GSGVE  161 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----CCCce
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999    7 699


Q ss_pred             EEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccc-
Q 009110          313 GTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQ-  390 (543)
Q Consensus       313 G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~-  390 (543)
                      |+|++|++++ |++|++||+.+++|||.+.++.|+|+|++..+++.+.++++| +|.++++++   +++.++..+.... 
T Consensus       162 G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~~~~~  237 (316)
T COG0668         162 GTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPEVLKI  237 (316)
T ss_pred             EEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhccccccc
Confidence            9999999999 999999999999999999999999999998888999999999 899999999   5555555555542 


Q ss_pred             cccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEE
Q 009110          391 QRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQ  455 (543)
Q Consensus       391 ~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~v~  455 (543)
                      ++ +|.+++.+++  ++++++.+++|+++.+   ++..+++++..+++.++++||++|+|++.++
T Consensus       238 ~~-~~~v~~~~~~--~~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~  296 (316)
T COG0668         238 EP-EPVIGVSELG--DSGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL  296 (316)
T ss_pred             CC-CcEEEEeecc--CCceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence            44 3689999999  8899999999999854   8999999999999999999999999999997

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=6.1e-20  Score=203.62  Aligned_cols=222  Identities=16%  Similarity=0.190  Sum_probs=192.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhchhhhhhhhhhe-eeeecCCccCCcEEEEeecC
Q 009110          230 MGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSV-MIHATQPFVINEWIQTKIQG  308 (543)
Q Consensus       230 ~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfAaq~~l~N~~aGi-~I~~~rpfrVGD~I~i~i~g  308 (543)
                      +.++-+.+++.+++.++++++.+-.+|++.+.+++..+..-+++.|.+.+++++++.++ +++..+||++||+|.+    
T Consensus       478 taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----  553 (714)
T KOG4629|consen  478 TAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----  553 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----
Confidence            56888899999999999999999999999999999988888999999999999999875 5777899999999999    


Q ss_pred             cceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCC
Q 009110          309 YEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQ  387 (543)
Q Consensus       309 ~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~  387 (543)
                      +|+.-.|||+++.+ |....+||+.+++||+.+.+++|.|+.|++.+...+++.++. |+.+|++.+.+.+.++++++|+
T Consensus       554 Dg~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~  632 (714)
T KOG4629|consen  554 DGVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPD  632 (714)
T ss_pred             eceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCcc
Confidence            67999999999999 999999999999999999999999999999999999999999 8999999999999999999998


Q ss_pred             ccccccccEEEEEeeCCC-CCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEec
Q 009110          388 VEQQRLHRRVFLENINPE-SQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIY  458 (543)
Q Consensus       388 i~~~~~~p~v~v~~~~~~-~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~v~~~~  458 (543)
                      .....  +.+.+.++.+. +-.+.+.+..+.+.+|..++|..|.++...+.+.+++.||+.-++++++.+.+
T Consensus       633 ~~~p~--~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~  702 (714)
T KOG4629|consen  633 DYYPD--LMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDINLKN  702 (714)
T ss_pred             ccccc--hhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchhhhc
Confidence            66322  35667666532 23445555666667788899999999999999999999999866666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	543
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	6e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 22/240 (9%)

Query: 198 VLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGF 257
           ++     ++ +I      L  +   D+T A     +F    V   +    +   +  +G 
Sbjct: 37  IIIVGLIIARMISNAVNRLMISRKIDATVA-----DFLSALVRYGIIAFTLIAALGRVGV 91

Query: 258 STQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEH 317
            T   +   G   +++ LA +   +N  + V++   +PF   E++   + G  V+GTV  
Sbjct: 92  QTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVD--LGG--VAGTVLS 147

Query: 318 VGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVA 376
           V  +S T +R  D + + IPN K     + N S++   R +  + +++  D+ +V  I  
Sbjct: 148 VQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI-- 204

Query: 377 DMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTS-----RFEEYLCVKEA 431
            +  ++    ++ + R    V L  +   S S+N +V  +  +       ++    +K  
Sbjct: 205 -LTNIIQSEDRILKDREM-TVRLNELG-AS-SINFVVRVWSNSGDLQNVYWDVLERIKRE 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 9e-09
 Identities = 76/487 (15%), Positives = 154/487 (31%), Gaps = 169/487 (34%)

Query: 115 LVAFAAWGLVPLVRLGRTIFLNRTDGSW---KRSRTHYILTSYLQPLLLWTGVTLICREL 171
           +            ++   IF       W   K   +   +   LQ L           ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKL---------LYQI 209

Query: 172 DP-LVLPSETSQGVKQRVLNFVRSLSTVLA---FAYCLSSLIQQIQKFLTEANDADSTDA 227
           DP     S+ S  +K R+ +    L  +L    +  CL  L+      L    +A + +A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LV------LLNVQNAKAWNA 261

Query: 228 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSS 287
               FN + K                                 +LLT   +++ T+FLS+
Sbjct: 262 ----FNLSCK---------------------------------ILLTTRFKQV-TDFLSA 283

Query: 288 ------VMIHATQPFVINE-------WIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAV 334
                  + H +     +E       ++  + Q               P       RE +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------------LP-------REVL 323

Query: 335 HIPNHKFTVNVVRNLSQKTHWRIKTYLAISHLDVHKVNSIVADMRKVLAKNPQVEQQRLH 394
               +   ++++    +        +    H++  K+ +I+     VL   P  E +++ 
Sbjct: 324 TT--NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVL--EPA-EYRKMF 375

Query: 395 RR--VFLENINPESQSLNIL------------VSCFVKTS----RFEEYLCVKEAILLDL 436
            R  VF  + +  +  L+++            V+   K S    + +E      +I L+L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 437 L----HVISHHRARMATPIRTVQKIYSEP---DLENI--PFADT-IFTHSRAAANRPFLL 486
                +  + HR         V   Y+ P   D +++  P+ D   ++H           
Sbjct: 436 KVKLENEYALHR-------SIVDH-YNIPKTFDSDDLIPPYLDQYFYSH----------- 476

Query: 487 IEPSY---KISSDDKIKASTRAARN----EEKIRRLNQPQNL---ILRHIHRLDWYQLLT 536
           I   +    I   +++        +    E+KIR  +   N    IL  + +L +Y+   
Sbjct: 477 I--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 537 TKRARQY 543
                +Y
Sbjct: 535 CDNDPKY 541

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	543
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	80.32

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=7.3e-45  Score=370.09  Aligned_cols=243  Identities=18%  Similarity=0.250  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 009110          197 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  276 (543)
Q Consensus       197 ~il~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfA  276 (543)
                      ++++++|++.+++..+.+.+.++.+     .+.+..+++.+++++++++++++++|+.+|+++++++|++|++|+++|||
T Consensus        36 ~i~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a  110 (286)
T 2vv5_A           36 AIIIVGLIIARMISNAVNRLMISRK-----IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA  110 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence            4557788888888776655444433     12345788999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCCceE
Q 009110          277 GREIFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWR  356 (543)
Q Consensus       277 aq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~~~r  356 (543)
                      +|++++|++||++|+++|||++||||++    +|.+|+|++|++++ |++|++||+.++|||+.+.+++|+|||+++.++
T Consensus       111 ~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r  185 (286)
T 2vv5_A          111 LQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSREPVRR  185 (286)
T ss_dssp             HTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSSSSEEE
T ss_pred             HHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCCCCcEE
Confidence            9999999999999999999999999998    78999999999999 999999999999999999999999999998889


Q ss_pred             EEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHH
Q 009110          357 IKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLD  435 (543)
Q Consensus       357 i~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~  435 (543)
                      ++++++++| +|+++++++   ++++++++|.+.+++. |.+.+.+++  ++++++++++|+++.   +++++|++++++
T Consensus       186 ~~~~v~v~y~~d~~~v~~~---l~~~~~~~~~vl~~p~-p~v~v~~~~--~~~i~~~v~~~~~~~---~~~~~~~~l~~~  256 (286)
T 2vv5_A          186 NEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVYWDVLER  256 (286)
T ss_dssp             EEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCHHHHHHH---HHHHHHhCcccccCCC-CEEEEEEec--CCeEEEEEEEEEccc---hHHHHHHHHHHH
Confidence            999999999 899999988   8899999999887764 799999998  789999999999974   578999999999


Q ss_pred             HHHHHHHCCCccCCCceEEEEec
Q 009110          436 LLHVISHHRARMATPIRTVQKIY  458 (543)
Q Consensus       436 i~~~l~~~gI~ia~P~~~v~~~~  458 (543)
                      +++.|+++||++|||+++++...
T Consensus       257 i~~~~~~~gI~ip~P~~~v~~~~  279 (286)
T 2vv5_A          257 IKREFDAAGISFPYPQMDVNFKR  279 (286)
T ss_dssp             HHHHHHHHTCCCCCCEEEEEEEC
T ss_pred             HHHHHHHCCCcCCCCceEEEecc
Confidence            99999999999999999999865

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=1.1e-42  Score=353.99  Aligned_cols=217  Identities=17%  Similarity=0.263  Sum_probs=192.9

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhchhhhhhhhhheeeeecCCccCCcEEEEeec
Q 009110          228 RNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATQPFVINEWIQTKIQ  307 (543)
Q Consensus       228 ~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfAaq~~l~N~~aGi~I~~~rpfrVGD~I~i~i~  307 (543)
                      ..++.+++++++++++++++++++|+.+|++.++++|++|++|+++|||+|++++|++||++|+++|||++||||++   
T Consensus        61 ~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i---  137 (285)
T 3udc_A           61 IDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI---  137 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE---
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             CcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEccCCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHH-cC
Q 009110          308 GYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLA-KN  385 (543)
Q Consensus       308 g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~sr~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~-~~  385 (543)
                       +|.+|+|++|++++ |++|++||+.++|||+.+  +.++|||++. .+..++++++| +|.++++++++++.+.+. .+
T Consensus       138 -~~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~  212 (285)
T 3udc_A          138 -NGISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSR  212 (285)
T ss_dssp             -TTEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcc
Confidence             78999999999999 999999999999999999  4699999865 45568999999 899999988665544443 34


Q ss_pred             CCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHHHHHHHHHHHHHHHCCCccCCCceEEEEecC
Q 009110          386 PQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVKEAILLDLLHVISHHRARMATPIRTVQKIYS  459 (543)
Q Consensus       386 p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir~~i~~~i~~~l~~~gI~ia~P~~~v~~~~~  459 (543)
                      +...+++  |.+.+.+++  |+++++++++|+++.   +++++|+++++++++.|+++||++|||+|++|+...
T Consensus       213 ~~~~~~~--~~v~~~~~~--~s~i~~~v~~~~~~~---~~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~~  279 (285)
T 3udc_A          213 DDLIEGP--TVLGITDMQ--DSKLVIMVYAKTQPM---QKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKRV  279 (285)
T ss_dssp             SSBSSCC--EEEEEEEEE--TTEEEEEEEEEESTT---CHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEEC
T ss_pred             cccccCc--ccccccccC--CCEEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCcC
Confidence            4433333  578899999  889999999999864   578999999999999999999999999999999763

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.32  E-value=1.9  Score=32.46  Aligned_cols=46  Identities=13%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             CCccCCcEEEEeecC--cceEEEEEEEcceeEEEEEeC---CCcEEEEeCccc
Q 009110          294 QPFVINEWIQTKIQG--YEVSGTVEHVGWWSPTIIRGD---DREAVHIPNHKF  341 (543)
Q Consensus       294 rpfrVGD~I~i~i~g--~~~~G~VeeIgl~sTT~ir~~---d~~~v~IPNs~l  341 (543)
                      -.|.+||.|+| ++|  .|..|.|+++.--. .++.-.   =.+.+-+|++++
T Consensus         6 ~~f~~GD~V~V-~~Gpf~g~~G~V~evd~e~-v~V~v~~fg~~tpvel~~~qv   56 (59)
T 2e6z_A            6 SGFQPGDNVEV-CEGELINLQGKILSVDGNK-ITIMPKHEDLKDMLEFPAQEL   56 (59)
T ss_dssp             SSCCTTSEEEE-CSSTTTTCEEEECCCBTTE-EEEEECCSSCCSCEEEETTTE
T ss_pred             ccCCCCCEEEE-eecCCCCCEEEEEEEeCCE-EEEEEEecCCCceEEEcHHHE
Confidence            36999999999 454  36899999998643 444431   134566666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	543
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	2e-11

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 283 NFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFT 342
           N  + V++   +PF   E++        V+GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 343 VNVVRNLS 350
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	543
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.79
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.64
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.85

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.5e-20  Score=147.83  Aligned_cols=66  Identities=30%  Similarity=0.451  Sum_probs=64.3

Q ss_pred             hhhhhhhheeeeecCCccCCcEEEEeecCcceEEEEEEEcceeEEEEEeCCCcEEEEeCcccccCeEEEcc
Q 009110          280 IFTNFLSSVMIHATQPFVINEWIQTKIQGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLS  350 (543)
Q Consensus       280 ~l~N~~aGi~I~~~rpfrVGD~I~i~i~g~~~~G~VeeIgl~sTT~ir~~d~~~v~IPNs~l~~~~I~N~s  350 (543)
                      +++|++||++|+++|||++||||++    ++..|+|++|+|++ |++|++||+.++|||+++.+++|+|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            7899999999999999999999998    78999999999999 999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.3e-15  Score=128.54  Aligned_cols=99  Identities=14%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             CCCceEEEEEEEecc-CCHHHHHHHHHHHHHHHHcCCCccccccccEEEEEeeCCCCCeEEEEEEEEEecCChhhHHHHH
Q 009110          351 QKTHWRIKTYLAISH-LDVHKVNSIVADMRKVLAKNPQVEQQRLHRRVFLENINPESQSLNILVSCFVKTSRFEEYLCVK  429 (543)
Q Consensus       351 r~~~~ri~~~l~v~y-td~e~v~~l~~~l~e~l~~~p~i~~~~~~p~v~v~~~~~~~~~l~i~V~~~v~~~~~~~~~~ir  429 (543)
                      |++.+|+.+.++|+| +|+++++++   +.++++++|.+.+++. |.|.+.+++  ++++++++++|+++.   +++.++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~i---l~~~~~~~~~v~~~p~-p~v~~~~~~--~s~i~~~v~~w~~~~---~~~~~~   71 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQI---LTNIIQSEDRILKDRE-MTVRLNELG--ASSINFVVRVWSNSG---DLQNVY   71 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHHH---HHHHHHHCTTBCTTSC-EEEEEEEEC--SSSEEEEEEEEEETT---THHHHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHHH---HHHHHHhChhhhcccC-chhhcccCC--CceEEEEEEEEecch---HHHHHH
Confidence            567899999999999 899999999   8899999999998875 799999999  889999999999985   468999


Q ss_pred             HHHHHHHHHHHHHCCCccCCCceEEEEec
Q 009110          430 EAILLDLLHVISHHRARMATPIRTVQKIY  458 (543)
Q Consensus       430 ~~i~~~i~~~l~~~gI~ia~P~~~v~~~~  458 (543)
                      ++++.+++++|+++||++|||+|++++..
T Consensus        72 ~~l~~~I~~~l~~~gI~ip~P~~~v~~~~  100 (101)
T d2vv5a2          72 WDVLERIKREFDAAGISFPYPQMDVNFKR  100 (101)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCcCCCCcEEEEEec
Confidence            99999999999999999999999999863

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=5.8e-09  Score=84.60  Aligned_cols=77  Identities=12%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Q 009110          197 TVLAFAYCLSSLIQQIQKFLTEANDADSTDARNMGFNFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLA  276 (543)
Q Consensus       197 ~il~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~~~iv~vi~~~~~L~~lgi~~~~lla~~Gi~glalgfA  276 (543)
                      .++.++|.+.++++...+...++.+.     +++..+++.+++++.+++++++.+|+.+|+|++++++++|++|+++|||
T Consensus        10 ~il~i~~~i~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa   84 (86)
T d2vv5a3          10 AIIIVGLIIARMISNAVNRLMISRKI-----DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLA   84 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            45577888888888876655555432     2345788999999999999999999999999999999999999999999


Q ss_pred             ch
Q 009110          277 GR  278 (543)
Q Consensus       277 aq  278 (543)
                      +|
T Consensus        85 ~Q   86 (86)
T d2vv5a3          85 LQ   86 (86)
T ss_dssp             HT
T ss_pred             cC
Confidence            98