Citrus Sinensis ID: 009115

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
MKPQSTMIVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSWKKKRNA
cccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEccccccEEEEccccEEEEEccccHHHHHHHHHHccccEEEccccccccccccccccccHHHHHHHHcccccEEEEEEEEEEccEEEEccccccccEEEEccccccccEEEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccHHHHHccccccccccccEEccccccccccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcc
cccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHccccccccHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccc
mkpqstmivPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQnlrfstpatpkplviitPIHVSHIQAAIKCSQkygmqirvrsgghdyeglsfrtsynspfVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIaekspnlafpagscpsvgtgghisggGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAirggggasFGVIVAWKIKlvdvpstvtvftvrrpwDQIATKLVHRWQHVAHKLPEDLFIMVFLRSlssgtegnRTMEAIFQSLFLGGVEKLLPLMQerfpelglvkedcneTSWIQSIMIFNGFESGESLDILLQRTnysdrrafkaksdyvrepmpgiaLEGIYERLSKVEAEAAQLFfvpyggkmseisksaipfphragniyeIGHLVLWAEDGIDASQRHINWIRELYSYmtpyvsknpraayinyrdldigtnnegytsykEASVWGKKYFNHNFDRLVHvktsvdpdnffrneqsipplsswkkkrna
mkpqstmiVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRrafkaksdyvrepmpgIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTsvdpdnffrneqsipplsswkkkrna
MKPQSTMIVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVgtgghisgggwgILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSWKKKRNA
*******IVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDP**F*******************
******M*VPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQS*************
********VPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPP**********
**PQSTMIVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKPQSTMIVPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSWKKKRNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.959 0.955 0.512 1e-153
A6P6W1545 Cannabidiolic acid syntha N/A no 0.959 0.955 0.514 1e-152
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.959 0.955 0.510 1e-150
A6P6V9544 Cannabidiolic acid syntha N/A no 0.931 0.930 0.518 1e-149
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.959 0.955 0.500 1e-149
Q9SVG4570 Reticuline oxidase-like p no no 0.922 0.878 0.463 1e-122
P93479535 Reticuline oxidase OS=Pap N/A no 0.935 0.949 0.420 1e-101
P30986538 Reticuline oxidase OS=Esc N/A no 0.941 0.949 0.417 1e-100
O06997447 Uncharacterized FAD-linke yes no 0.755 0.917 0.281 3e-28
Q796Y5451 Uncharacterized FAD-linke no no 0.744 0.895 0.270 2e-24
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  540 bits (1392), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/535 (51%), Positives = 381/535 (71%), Gaps = 14/535 (2%)

Query: 9   VPSTLALLLSFQLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQN 68
           V   +   LSF +  + A+  E+FL+C S +   + + +K++YTQ++  Y S+L  T+QN
Sbjct: 11  VCKIIFFFLSFNIQISIANPQENFLKCFSQYIPTNVTNAKLVYTQHDQFYMSILNSTIQN 70

Query: 69  LRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFV 128
           LRF++  TPKPLVIITP++VSHIQ  I CS+K G+QIR RSGGHD EG+S+ +    PFV
Sbjct: 71  LRFTSDTTPKPLVIITPLNVSHIQGTILCSKKVGLQIRTRSGGHDAEGMSYISQ--VPFV 128

Query: 129 IIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGG 188
           I+D+ N+ S+ IDV ++TAWV+ GATLG++YY I E + NL+FPAG CP+VG GGH SGG
Sbjct: 129 IVDLRNMHSVKIDVHSQTAWVEAGATLGEVYYWINENNENLSFPAGYCPTVGAGGHFSGG 188

Query: 189 GWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKL 248
           G+G L+R YGLAADNI+DA +++V G+ LDRKSMGEDLFWAIRGGGG +FG+I AWKI+L
Sbjct: 189 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIRL 248

Query: 249 VDVPSTVTVFTVRRPWD-QIATKLVHRWQHVAHKLPED--LFIMVFLRSLSSGTEGNR-T 304
           V VPS  T+F+V++  +     KLV++WQ++A+   ++  LF     R+++     N+ T
Sbjct: 249 VAVPSMSTIFSVKKNMEIHELVKLVNKWQNIAYMYEKELLLFTHFITRNITDNQGKNKTT 308

Query: 305 MEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESL----D 360
           + + F S+F GGV+ L+ LM + FPELG+ K DC + SWI +I+ ++G  +  +     +
Sbjct: 309 IHSYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKQLSWIDTIIFYSGVVNYNTTYFKKE 368

Query: 361 ILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEIS 420
           ILL R+    + AF  K DYV++P+P  A+  I E+L + +       F PYGG M EIS
Sbjct: 369 ILLDRSG-GRKAAFSIKLDYVKKPIPETAMVTILEKLYEEDVGVGMFVFYPYGGIMDEIS 427

Query: 421 KSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYR 480
           +SAIPFPHRAG +YEI ++  W +   + +++HINWIR +Y++ TPYVS+NPR AY+NYR
Sbjct: 428 ESAIPFPHRAGIMYEIWYIASWEKQ--EDNEKHINWIRNVYNFTTPYVSQNPRMAYLNYR 485

Query: 481 DLDIG-TNNEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL 534
           DLD+G TN E   +Y +A +WG+KYF  NF+RLV VKT VDPDNFFRNEQSIPPL
Sbjct: 486 DLDLGKTNFESPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPDNFFRNEQSIPPL 540
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
224115242527 predicted protein [Populus trichocarpa] 0.939 0.967 0.673 0.0
224122378535 predicted protein [Populus trichocarpa] 0.939 0.953 0.666 0.0
224110866533 predicted protein [Populus trichocarpa] 0.981 1.0 0.629 0.0
224108834533 predicted protein [Populus trichocarpa] 0.981 1.0 0.627 0.0
224103509531 predicted protein [Populus trichocarpa] 0.937 0.958 0.649 0.0
224108830533 predicted protein [Populus trichocarpa] 0.981 1.0 0.625 0.0
224122386533 predicted protein [Populus trichocarpa] 0.941 0.958 0.640 0.0
224122382534 predicted protein [Populus trichocarpa] 0.942 0.958 0.635 0.0
224061593531 predicted protein [Populus trichocarpa] 0.937 0.958 0.635 0.0
224117896532 predicted protein [Populus trichocarpa] 0.977 0.998 0.620 0.0
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/518 (67%), Positives = 428/518 (82%), Gaps = 8/518 (1%)

Query: 23  AAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVI 82
             +A THESFLQCL   S+NS SISK+IYT  NSSYSS+L+ ++QNLRF+T +TPKPLVI
Sbjct: 15  VTSAHTHESFLQCLD--SQNSHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVI 72

Query: 83  ITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDV 142
           +TP ++SHIQAAI CSQK+GMQIR+RSGGHDYEGLS+ ++++  FV+ID+INL +I+++ 
Sbjct: 73  VTPTNISHIQAAIICSQKHGMQIRIRSGGHDYEGLSYVSTFS--FVVIDLINLRTINVNA 130

Query: 143 ENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAAD 202
           ENKTAWVQ G T+G++YYRIAEKS  LAFPA  CP+VG GGH SGGG+G+L+RKYGLAAD
Sbjct: 131 ENKTAWVQSGVTIGEVYYRIAEKSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAAD 190

Query: 203 NIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRR 262
           +I+DA+++DV+GR LDR+SMGEDLFWAIRGGGG +FGV++AWKI LV  P TVTVF V+R
Sbjct: 191 HIIDAQLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQR 250

Query: 263 PWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEG--NRTMEAIFQSLFLGGVEKL 320
             +Q A+KLVHRWQ VA KL EDLFI + L  ++S  EG  N T++A F SLFLGG+++L
Sbjct: 251 TLEQNASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRL 310

Query: 321 LPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGESLDILLQRTNYSDRRAFKAKSDY 380
           LPL+Q+ FPELGLVKEDC E SWIQS++ F+GF S  SLD+LL RT  S RR FKAKSDY
Sbjct: 311 LPLIQDSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTP-STRRNFKAKSDY 369

Query: 381 VREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIGHLV 440
           V+EP+P + LEGI+ER    +     L F PYGGKMSEIS+S+IPFPHRAGNIY+I HL+
Sbjct: 370 VKEPIPELGLEGIWERFFDKDINTPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLI 429

Query: 441 LWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNE-GYTSYKEASV 499
            W E+GI A++RHI+WIR LYSY+ PYVSK PRAAY+NYRDLDIG NN  G TSY++AS+
Sbjct: 430 YWDEEGIVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASI 489

Query: 500 WGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSW 537
           WG KYF +NFDRLV VKT+VDP NFFRNEQSIPPLSSW
Sbjct: 490 WGLKYFKNNFDRLVRVKTAVDPANFFRNEQSIPPLSSW 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061593|ref|XP_002300557.1| predicted protein [Populus trichocarpa] gi|222847815|gb|EEE85362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117896|ref|XP_002317695.1| predicted protein [Populus trichocarpa] gi|222860760|gb|EEE98307.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.950 0.969 0.507 1.1e-140
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.928 0.945 0.490 8.3e-138
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.972 0.975 0.485 1.1e-137
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.937 0.965 0.486 3.7e-135
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.942 0.962 0.483 9.8e-135
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.955 0.966 0.476 8.8e-134
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.930 0.943 0.488 8.8e-134
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.939 0.955 0.478 3.1e-131
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.972 0.974 0.469 3.9e-131
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.909 0.932 0.488 6.4e-131
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
 Identities = 271/534 (50%), Positives = 374/534 (70%)

Query:     5 STMIVPSTLALLLSF-QLIAAAADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLE 63
             S +I  +T  LLLS    ++A      SFLQCLSL   +S  +SKVI+T  ++S+SSVL 
Sbjct:     9 SVLIFFTTSTLLLSIPHPVSANRSNQSSFLQCLSLQLNDSNIVSKVIHTPNDTSFSSVLA 68

Query:    64 LTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSY 123
              ++QN RFS P  PKP++I+TP+  S +Q+A+KC++++G+ IR RSGGHDYEGLS+ T  
Sbjct:    69 SSIQNQRFSAPDVPKPVLILTPVQPSDVQSAVKCARRFGIHIRTRSGGHDYEGLSYVT-- 126

Query:   124 NSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXX 183
             + PFVI+D+ NL SI++DV+N++ WVQ GAT+G+LYY I +K+  LAFPAG CP+V    
Sbjct:   127 HKPFVILDLRNLRSITVDVDNRSVWVQTGATIGELYYEIGKKNRTLAFPAGVCPTVGVGG 186

Query:   184 XXXXXXXXILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVA 243
                      LLRK+GLAAD+++DAR++D +GR L+R+ MGED FWAIRGGGG+SF V+++
Sbjct:   187 HFSGGGYGTLLRKHGLAADHVIDARVVDARGRILERREMGEDFFWAIRGGGGSSFCVVLS 246

Query:   244 WKIKLVDVPSTVTVFTVRRPWDQIATKLVHRWQHVAHKLPEDLFIMVFLRSLSSGTEGNR 303
             WKI L++VPSTVTVF V +  +Q A K++HRWQ VA K+ +DLFI V L+   +      
Sbjct:   247 WKIGLINVPSTVTVFNVTKFSEQSALKIIHRWQFVADKVSDDLFIRVMLQRYKN------ 300

Query:   304 TMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGES-LDIL 362
              + A F  L+LG V+ LL ++ + FPELGL ++DC E SWI+S++ F   E GE  +++L
Sbjct:   301 MVRASFPGLYLGSVKNLLKMVNKEFPELGLEEDDCTEMSWIESVIWFA--ELGEEPINVL 358

Query:   363 LQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKS 422
              +RT  S   AFKAKSD+V+EPMP  A+  ++ RL + EAE AQL F P+GGKMSEI+  
Sbjct:   359 TKRTRAS--LAFKAKSDFVQEPMPKTAISKLWRRLQEPEAEHAQLIFTPFGGKMSEIADY 416

Query:   423 AIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDL 482
               PFPHR GNIYEI +L  W   G D  ++++ W+  +Y  M+ +V+K+PR AYIN RDL
Sbjct:   417 ETPFPHRKGNIYEIQYLNYWR--G-DVKEKYMRWVERVYDDMSEFVAKSPRGAYINLRDL 473

Query:   483 DIGTN-NEGYTSYKEASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLS 535
             D+G       + Y+E   WG KYF +NF+RLV VKTSVDP +FF +EQSIPP +
Sbjct:   474 DLGMYVGVKRSKYEEGKSWGVKYFKNNFERLVRVKTSVDPSDFFCDEQSIPPFT 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.51020.95940.9559N/Ano
A6P6W0CASL1_CANSANo assigned EC number0.51210.95940.9559N/Ano
A6P6W1CASL2_CANSANo assigned EC number0.51400.95940.9559N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.50090.95940.9559N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.51820.93180.9301N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-29
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-25
pfam0803145 pfam08031, BBE, Berberine and berberine like 5e-18
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 2e-04
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  113 bits (284), Expect = 1e-29
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 79  PLVIITPIHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI 138
           P  ++ P     + A ++ + + G+ + VR GG    G +      +  V++D+  L+ I
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDA----VLTGGVVLDLSRLNGI 56

Query: 139 -SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKY 197
             ID E+ TA V+ G TLG L   +A K   L    GS      GG I+  G G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 198 GLAADNIVDARMIDVQGRFLD 218
           GL  DN++   ++   G  + 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.89
KOG1232511 consensus Proteins containing the FAD binding doma 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.84
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.79
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.69
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.69
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.62
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.61
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.56
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.4
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.04
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.33
PRK09799258 putative oxidoreductase; Provisional 95.01
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.94
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 93.64
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 92.78
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.49
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.84
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.43
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 86.13
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 85.41
PLN00107257 FAD-dependent oxidoreductase; Provisional 84.5
PLN00192 1344 aldehyde oxidase 81.69
PLN02906 1319 xanthine dehydrogenase 81.68
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 80.29
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-39  Score=344.84  Aligned_cols=209  Identities=20%  Similarity=0.252  Sum_probs=179.8

Q ss_pred             CCCCcHHHHHhhhccccCCCCCCCCceEEEEcCCHHHHHHHHHHHH--HcCCeEEEeeCCCCCCCCCcccCCCCCeEEEE
Q 009115           54 YNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQ--KYGMQIRVRSGGHDYEGLSFRTSYNSPFVIID  131 (543)
Q Consensus        54 ~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~~~givId  131 (543)
                      +...++.+.      ..|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+    |++||
T Consensus        46 d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~----GivId  115 (525)
T PLN02441         46 DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG----GVVVD  115 (525)
T ss_pred             CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC----eEEEE
Confidence            445555543      2488878889999999999999999999997  67999999999999999887765    89999


Q ss_pred             eccCcc------E-EEeCCCCEEEEeCCCcHHHHHHHHHHhCCCCee-cCCCCCCccccccCcCCCCCCCccccCchhhh
Q 009115          132 MINLSS------I-SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAF-PAGSCPSVGTGGHISGGGWGILLRKYGLAADN  203 (543)
Q Consensus       132 l~~~~~------i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~-~~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~  203 (543)
                      |++||+      + ++|.+..+|+|++|++|.+|.+++.++|  +.. ..+....+++||.+++||+|..+.+||..+|+
T Consensus       116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~  193 (525)
T PLN02441        116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISN  193 (525)
T ss_pred             CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHh
Confidence            999999      4 8889999999999999999999999986  433 23555678999999999999999999999999


Q ss_pred             eeeEEEEeeCCcEee-ccCCCccchhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCchHHHHHHHHHH
Q 009115          204 IVDARMIDVQGRFLD-RKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWDQIATKLVHRW  275 (543)
Q Consensus       204 v~~~~vV~~~G~~~~-~~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~~~~~~~~~~~  275 (543)
                      |+++|||+++|++++ ++.+|+|||||++|| +|+|||||+++||++|+|+.+..+.+.|...+.+.+.++.+
T Consensus       194 Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l  265 (525)
T PLN02441        194 VLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL  265 (525)
T ss_pred             EEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence            999999999999999 888899999999999 58999999999999999997767677776544444334333

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-151
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-131
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-124
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-102
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-102
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-102
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-101
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-100
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-100
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-100
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 3e-20
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-19
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 1e-18
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-17
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-16
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-15
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-15
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 3e-15
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 260/518 (50%), Positives = 360/518 (69%), Gaps = 14/518 (2%)
Query: 26  ADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITP 85
           A+  E+FL+C S H  N+ +  K++YTQ++  Y S+L  T+QNLRF +  TPKPLVI+TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 86  IHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENK 145
            + SHIQA I CS+K G+QIR RSGGHD EG+S+ +    PFV++D+ N+ SI IDV ++
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQ 118
Query: 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVXXXXXXXXXXXXILLRKYGLAADNIV 205
           TAWV+ GATLG++YY I EK+ NL+FP G CP+V             L+R YGLAADNI+
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178
Query: 206 DARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWD 265
           DA +++V G+ LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VPS  T+F+V++  +
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238
Query: 266 -QIATKLVHRWQHVAHKLPEDLFIMVFL--RSLSSGTEGNR-TMEAIFQSLFLGGVEKLL 321
                KL ++WQ++A+K  +DL +M     ++++     N+ T+   F S+F GGV+ L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298
Query: 322 PLMQERFPELGLVKEDCNETSWIQSIMIFNG---FESGE-SLDILLQRTNYSDRRAFKAK 377
            LM + FPELG+ K DC E SWI + + ++G   F +     +ILL R+    + AF  K
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS-AGKKTAFSIK 357
Query: 378 SDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIG 437
            DYV++P+P  A+  I E+L + +  A      PYGG M EIS+SAIPFPHRAG +YE+ 
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 438 HLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIG-TNNEGYTSYKE 496
           +   W +   + +++HINW+R +Y++ TPYVS+NPR AY+NYRDLD+G TN+    +Y +
Sbjct: 418 YTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ 475
Query: 497 ASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPL 534
           A +WG+KYF  NF+RLV VKT VDP+NFFRNEQSIPPL
Sbjct: 476 ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-179
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-178
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-176
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-176
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-175
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-169
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-125
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-48
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-39
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-22
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-18
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 4e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-13
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-06
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-05
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 4e-04
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 7e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  614 bits (1585), Expect = 0.0
 Identities = 266/520 (51%), Positives = 362/520 (69%), Gaps = 14/520 (2%)

Query: 26  ADTHESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITP 85
           A+  E+FL+C S H  N+ +  K++YTQ++  Y S+L  T+QNLRF +  TPKPLVI+TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 86  IHVSHIQAAIKCSQKYGMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENK 145
            + SHIQA I CS+K G+QIR RSGGHD EG+S+      PFV++D+ N+ SI IDV ++
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSY--ISQVPFVVVDLRNMHSIKIDVHSQ 118

Query: 146 TAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISGGGWGILLRKYGLAADNIV 205
           TAWV+ GATLG++YY I EK+ NL+FP G CP+VG GGH SGGG+G L+R YGLAADNI+
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178

Query: 206 DARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWD 265
           DA +++V G+ LDRKSMGEDLFWAIRGGGG +FG+I AWKIKLV VPS  T+F+V++  +
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238

Query: 266 -QIATKLVHRWQHVAHKLPEDLFIMVFLRSL---SSGTEGNRTMEAIFQSLFLGGVEKLL 321
                KL ++WQ++A+K  +DL +M    +     +  +   T+   F S+F GGV+ L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298

Query: 322 PLMQERFPELGLVKEDCNETSWIQSIMIFNGFESGES----LDILLQRTNYSDRRAFKAK 377
            LM + FPELG+ K DC E SWI + + ++G  +  +     +ILL R+    + AF  K
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRS-AGKKTAFSIK 357

Query: 378 SDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEISKSAIPFPHRAGNIYEIG 437
            DYV++P+P  A+  I E+L + +  A      PYGG M EIS+SAIPFPHRAG +YE+ 
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417

Query: 438 HLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIGTNNE-GYTSYKE 496
           +   W +   +   +HINW+R +Y++ TPYVS+NPR AY+NYRDLD+G  N     +Y +
Sbjct: 418 YTASWEKQEDNE--KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ 475

Query: 497 ASVWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSS 536
           A +WG+KYF  NF+RLV VKT VDP+NFFRNEQSIPPL  
Sbjct: 476 ARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP 515
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.85
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.18
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.48
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.14
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 94.4
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 94.12
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.97
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.57
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3.4e-90  Score=743.07  Aligned_cols=506  Identities=53%  Similarity=0.968  Sum_probs=433.6

Q ss_pred             CcccHHHhhcccCCCCCcccceEEcCCCCCcHHHHHhhhccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHHcCCeEEE
Q 009115           28 THESFLQCLSLHSENSTSISKVIYTQYNSSYSSVLELTLQNLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKYGMQIRV  107 (543)
Q Consensus        28 ~~~~~~~c~~~~~~~~~~~~~~v~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~~~~v~~  107 (543)
                      +.++|.+||+........+++.|++|+++.|++++.++.+|.||+......|.+||+|+|++||+++|++|+++++||.+
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            45789999998876667889999999999999998888899999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCCCCcccCCCCCeEEEEeccCccEEEeCCCCEEEEeCCCcHHHHHHHHHHhCCCCeecCCCCCCccccccCcC
Q 009115          108 RSGGHDYEGLSFRTSYNSPFVIIDMINLSSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHISG  187 (543)
Q Consensus       108 ~ggGh~~~g~~~~~~~~~~givIdl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~g  187 (543)
                      |||||++.|.+...+  .++++|||++||+|++|++.++|+||+|+++++|+++|.++|.++.+++|.|++|||||+++|
T Consensus        83 rggGh~~~g~~~~~~--~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCCS--SSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCCC--CCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            999999998774322  249999999999999999999999999999999999999998789999999999999999999


Q ss_pred             CCCCCCccccCchhhheeeEEEEeeCCcEeeccCCCccchhheeccCCCCeEEEEEEEEEEEecCCeEEEEEEEcCch-H
Q 009115          188 GGWGILLRKYGLAADNIVDARMIDVQGRFLDRKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDVPSTVTVFTVRRPWD-Q  266 (543)
Q Consensus       188 gg~G~~~~~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~~~~~~~~~~~~~~~-~  266 (543)
                      ||+|+++++||+++|+|+++|||++||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..|.+.+.++ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999844468999999999866899999999999999999888888877654 5


Q ss_pred             HHHHHHHHHHHhhhcCCCCceEEEEEeecCCC---CCCCcceEEEEEEEEeCCccCcHhHHhhhccccCCccccccccch
Q 009115          267 IATKLVHRWQHVAHKLPEDLFIMVFLRSLSSG---TEGNRTMEAIFQSLFLGGVEKLLPLMQERFPELGLVKEDCNETSW  343 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~---~~g~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~  343 (543)
                      ++.+++.+||++.+++|+++++.+.+...++.   ..+...+.+.+.++|+|+.+++.+.|.+.|++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            57889999999999999999999888753221   112233467888999999999998898888888776677889999


Q ss_pred             HHHHHHhhcCCCC-Cc---hhHhhhccCCcccccceeecccccCCCCHHHHHHHHHHHhccCccceeEEEEecCCccCCC
Q 009115          344 IQSIMIFNGFESG-ES---LDILLQRTNYSDRRAFKAKSDYVREPMPGIALEGIYERLSKVEAEAAQLFFVPYGGKMSEI  419 (543)
Q Consensus       344 ~~~~~~~~~~~~~-~~---~~~~~~r~~~~~~~~~~~~s~~~~~~l~~~~i~~~~~~~~~~~p~~~~i~~~~~GGav~~v  419 (543)
                      ++.+.+++++..+ .+   ++.+.++... ...+||.||+|+.+++++++++.+++.+.+.....+.+.++++||+++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v  399 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAG-KKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI  399 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCS-CCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTS
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcC-cccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCC
Confidence            9988887755432 22   4445555333 34567899999998999999999999887632225788999999999999


Q ss_pred             CCCCCCCcccCCCeEEEEEEEeecCCCcchhHHHHHHHHHHHHhcccccCCCCCceeccccCCCcC-CCCCCCcchhhhh
Q 009115          420 SKSAIPFPHRAGNIYEIGHLVLWAEDGIDASQRHINWIRELYSYMTPYVSKNPRAAYINYRDLDIG-TNNEGYTSYKEAS  498 (543)
Q Consensus       420 ~~~ataf~~R~~~~~~v~~~~~W~d~~~~~~~~~~~wi~~~~~~l~p~~~~~~~g~YvNy~d~dl~-~~~~~~~~~~~~~  498 (543)
                      +.++|||+||++.+|.+++.+.|.++  +.+++..+|++++++.|.|+.++.++++|+||.|.|++ .+..++++|+.++
T Consensus       400 ~~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~  477 (518)
T 3vte_A          400 SESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR  477 (518)
T ss_dssp             CTTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHH
T ss_pred             CCCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhh
Confidence            99999999998558999999999765  45678899999999999999765567899999998876 3223456777888


Q ss_pred             hhhhhhhhhhHHHHHHhhhccCCCCCccCCCCCCCCcccc
Q 009115          499 VWGKKYFNHNFDRLVHVKTSVDPDNFFRNEQSIPPLSSWK  538 (543)
Q Consensus       499 ~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI~~~~~~~  538 (543)
                      .|++.|||+||+||++||+||||+|||+++|||||+++|+
T Consensus       478 ~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~~~  517 (518)
T 3vte_A          478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH  517 (518)
T ss_dssp             HHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCTTC
T ss_pred             hHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999998864
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 543
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-16
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-15
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.1 bits (186), Expect = 1e-16
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 71  FSTPATPKPLVIITPIHVSHIQAAIKCSQK---YGMQIRVRSGGHDYEGLSFRT-SYNSP 126
           F    +  P  ++ P     + A +  +     +   I  R  GH   G +F        
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 127 FVIIDMINL-SSISIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFPAGSCPSVGTGGHI 185
              +        I++  + +            +       +  +A  + +     T G  
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRAS--LARGVAPRSWTDYLYLTVGGT 139

Query: 186 S-GGGWGILLRKYGLAADNIVDARMIDVQGRFLD-RKSMGEDLFWAIRGGGGASFGVIVA 243
               G      ++G    N+++  +I   G  +   K +  DLF A+ GG G  FGVI  
Sbjct: 140 LSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITR 198

Query: 244 WKIKLV 249
            +I + 
Sbjct: 199 ARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.84
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.82
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.08
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 94.01
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.5
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.22
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.17
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.54
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 85.64
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 83.89
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 80.14
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.7e-37  Score=293.19  Aligned_cols=177  Identities=19%  Similarity=0.287  Sum_probs=161.0

Q ss_pred             cccCCCCCCCCceEEEEcCCHHHHHHHHHHHHHc---CCeEEEeeCCCCCCCCCcccCCCCCeEEEEeccCccE------
Q 009115           68 NLRFSTPATPKPLVIITPIHVSHIQAAIKCSQKY---GMQIRVRSGGHDYEGLSFRTSYNSPFVIIDMINLSSI------  138 (543)
Q Consensus        68 n~r~~~~~~~~p~~vv~P~~~~dv~~~v~~a~~~---~~~v~~~ggGh~~~g~~~~~~~~~~givIdl~~~~~i------  138 (543)
                      ...|+......|.+|++|+|++||+++|++|+++   ++||++||+||++.|.+...+    +++|||++||+|      
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~----~ividl~~l~~i~~~~~~   94 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG----GVVVNMASLGDAAAPPRI   94 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT----SEEEEGGGGGCSSSSCSE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC----CEeeeccccceeeeceeE
Confidence            3457766778999999999999999999999997   699999999999998887655    899999999985      


Q ss_pred             EEeCCCCEEEEeCCCcHHHHHHHHHHhCCCCeec-CCCCCCccccccCcCCCCCCCccccCchhhheeeEEEEeeCCcEe
Q 009115          139 SIDVENKTAWVQVGATLGQLYYRIAEKSPNLAFP-AGSCPSVGTGGHISGGGWGILLRKYGLAADNIVDARMIDVQGRFL  217 (543)
Q Consensus       139 ~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~G~~~~~~G~~~d~v~~~~vV~~~G~~~  217 (543)
                      ++|++..+++||+|+++.+|.++|.++|  +.++ .+....++|||++++||+|..+++||..+|+|+++|+|++||+++
T Consensus        95 ~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          95 NVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             EECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             EEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            6899999999999999999999999986  4444 455577899999999999999999999999999999999999999


Q ss_pred             e-ccCCCccchhheeccCCCCeEEEEEEEEEEEec
Q 009115          218 D-RKSMGEDLFWAIRGGGGASFGVIVAWKIKLVDV  251 (543)
Q Consensus       218 ~-~~~~~~dl~~a~rG~g~g~~Givt~~~lk~~p~  251 (543)
                      + ++.+|+||||++||| +|+|||||+++||++|+
T Consensus       173 ~~s~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         173 TCSKQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEESSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             EECCCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            9 888899999999999 58999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure